<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:03:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541970" ref_strand="+" ref_description="SGN-E541970 [TUS-63-A14]">
      <seq>cagaaattaggggagaatcatcatcattcaacaacagctaaaaccctagattgagaaattgaagtattgaaaacctttatttgatctataacaacaatgccgcaagtgaagatcgtcgccaggaatttcatggacatggtggcttcattgcctgtcatgaaactcgacatgctttacgacaattcctttatctgtgaagccattcttagatcgttacctcccttagcgaagaagtatgtgctgcaaatgttgtatatagacataccaattacagccaagtcgatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgatagattgatacagctgagagtaatgacagaaacatttgacaggaaaaaggaagccatgtatcaactaaacccaaaatttcaatttaatcttcagaagcatatagtctatggtggagtcttaccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagaggcatatgctgtcgaacaatgggagtgctttctgctgaaccttataagctccagtgaagctggaaagaccacaaacataagctcttcgatgatgaaaatcttccagcgtggacttttaagtcagagagacgatagagaacctccaaggttgactgaaagtgggttccaattnnctgctatggacacaaatgcacagctttggtacatcatcagggagtacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="4549" stop="7969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4849" g_stop="5057" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5058" i_stop="5529" i_length="472">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5530" g_stop="5697" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="377" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5698" i_stop="6363" i_length="666">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6364" g_stop="6432" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="446" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6433" i_stop="7000" i_length="568">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7001" g_stop="7094" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="540" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7095" i_stop="7262" i_length="168">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7263" g_stop="7363" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="641" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7364" i_stop="7494" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7495" g_stop="7543" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="691" r_length="50" r_score="0.918"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7544" i_stop="7621" i_length="78">
            <donor d_prob="0.967" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7622" g_stop="7669" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="738" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E541970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4849" e_stop="5057"/>
          <exon e_start="5530" e_stop="5697"/>
          <exon e_start="6364" e_stop="6432"/>
          <exon e_start="7001" e_stop="7094"/>
          <exon e_start="7263" e_stop="7363"/>
          <exon e_start="7495" e_stop="7543"/>
          <exon e_start="7622" e_stop="7669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAGGTATTCTAAAAATCCCCAATTTGATCGAATGTTAAGAGTTTTTCTTGCTGCACAACCAGTTATAGGATTAATTTCTGCTTGTAAAAATGGATGTAATTTCACCATTTTAGCATATAGTGATATGTACTGTGTACATTTGGATGCAAAAGTTGTTTACTTTGTCTTTAAGATTATTATTATGGAGAAATGAACTTCAAGCTATAGTCATAGATGGATGAAGTTAATCAGCAGCAAGTGCTGTGCTGACACAAGTATAAACATACACAAGCACAAATTTTTTAATGTTTGACTGTTTTTATAGAAAGTATTTGGAGTATATTTTTTTTTGTATCCATGGCAACAAGAGATTGATTAATTCACTAGTACTTAGCACTCACTGTATTCACCTCGAGCTATATCAAGGGAATTCACTTTTGGTGATACTATTTTGAAACATGTTATATTATGTGCTTAATTTGTTCATTTCTGCTAGATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAGGTTATTGAGCAGATTCTTCTCTCTTGATAGCTGCTATATTTTTGTCTTGAATAACGCTGACCTATAACAACATTTGACACTTAAATTTTTATTTGGTTGTTATAAGCAAAAAAGAGATGCAAAAAATCTAATTTTTAATGTGAGAAAAGAGGATAAACTTGTTAAATTTAAAATCTCAGAAGTAATCATATTTCAGCAATTCAAAATTAAATAATGCTTGTACATTATCAATGAATTTTGACCCTTACAAGATGGAGTTTTTATCTCTAATGGAATACAAAGTCACTGCCTGTTGTTAAATTTCCTCCTCAACCGGAGGCGGATGCTATATAGAGGTCTGTATTTACTTTTCCCGCTTGATCCTATCTGGTTGTCATGTTTTTCACTTAGCACTTTAAATACACATGAGCAAAGTTAGAACTTTGGTCAAAATAAGCAAAAGCATGATTAAAGGGAATATCTTGAATTGTTAATGCTTGATCTTTCTTTTGTTTTTTCCTTTTAAGTTTTGCTCTTTATAAGCATTATAGAAGTTTTAGGTAGTAGAAATCATGTCTCAACTATTGGAATGACGAAATCTGGTCAGGGTGATCCACAATATCTTTGCATGTTGTTATAGTCAGTTTTTGATTGTTGAACGTTGCCATTCTCTTTGATTTCTTACAGGAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGGGTAAGCTTTATTATCTTATTTATGTTATTTTCTCTGTAGGTGTTAATGATCACTACTGGCCAGCCCTCTCTGAGATGGGTGATCTAAAAATGAAAGTACATGTACAGTTAGTAGAAGTACTAGTCAATGACATTTGGCGTCTAGACACCAGATTCATGGCCTATTAATCCCCGTCTCGAAGGAACGATTTCTTTACTCATTTGCATATTTGAATAAAGTTGGCCCAAATTGAGTTGAGTTAATATAGAGAATTGATGTAGGTGACTGCAACTAGTTTGGGATTGATCGATTGAGGCATAATTATTATTATTGTTGTTGTAGGTATATTCACACTTGTGTATATGTTCCATTTTATTCATCCTATATGACTTCTTGATTTGTCTTGCTAAATTTCTAATTGGGCTCAAGTTCAGAATTTGACCCTGATACATTTGACCCTCAGTTGACCTATAAGATGCTAAACTTGATACAGTAACTTGTTGTGGTAATACTTCTACATGATGCTGAAATATCTGTCTTAACCTTGGTCTTGTAATTGCACTATAATATGTGATTTCAATTACTGTAGTGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAGGTATGACTTGCATTTTGTTAGTAGTTCTTATCCGTTGATTTTCCAGGAGCGTTCAGAATGTGTAATAATATGTTGTGAGACAATCTGCTTTTCTTTCGGTCTTGATCAAACTGCAGCCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAGGTACGTCCACCTCAGTGTTATGGATATATATTTACTCGCAGAAAACATATGTATAGTTCTTTGTCCTCATGTGTATTTATGATTTTGTAATAATCGATATAATCTCCATGAGTTCATGCCTTCTTAAGCAGAGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCT-TGGTACGATTTACTGAATTATCTGAATCAATTAGTGTTCTTTTTTGTTGGGAAATTGTATTGACTGGTGGCATATTACAGCTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATA</genome_strand>
        <mrna_strand>CAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG........................................................................................................................................................................TGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAG...................................................................................................................................AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTNNCTG..............................................................................CT-ATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300823" ref_strand="+" ref_description="SGN-E300823 [cLEW-8-K8]">
      <seq>agaaattaggggagaatcatcatcattcaacaacagctaaaaccctagattgagaaattgaagtattgaaaacctttatttgatctataacaacaatgccgcaagtgaagatcgtcgccaggaatttcatggacatggtggcttcattgcctgtcatgaaactcgacatgctttacgacaattcctttatctgtgaagccattcttagatcgttacctcccttagcgaagaagtatgtgctgcaaatgttgtatatagacataccaattacagccaagtcgatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgatagattgatacagctgagagtaatgacagaaacatttgacaggaaaaaggaagccatgtatcaactaaacccaaaatttcaatttaatcttcagaagcatatagtctatggtggagtcttaccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagaggcatatgctgtcgaacaatgggagtgctttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="4550" stop="7398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4850" g_stop="5057" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5058" i_stop="5529" i_length="472">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5530" g_stop="5697" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="376" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5698" i_stop="6363" i_length="666">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6364" g_stop="6432" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="445" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6433" i_stop="7000" i_length="568">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7001" g_stop="7094" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="539" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7095" i_stop="7262" i_length="168">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7263" g_stop="7270" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="547" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E300823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4850" e_stop="5057"/>
          <exon e_start="5530" e_stop="5697"/>
          <exon e_start="6364" e_stop="6432"/>
          <exon e_start="7001" e_stop="7094"/>
          <exon e_start="7263" e_stop="7270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAGGTATTCTAAAAATCCCCAATTTGATCGAATGTTAAGAGTTTTTCTTGCTGCACAACCAGTTATAGGATTAATTTCTGCTTGTAAAAATGGATGTAATTTCACCATTTTAGCATATAGTGATATGTACTGTGTACATTTGGATGCAAAAGTTGTTTACTTTGTCTTTAAGATTATTATTATGGAGAAATGAACTTCAAGCTATAGTCATAGATGGATGAAGTTAATCAGCAGCAAGTGCTGTGCTGACACAAGTATAAACATACACAAGCACAAATTTTTTAATGTTTGACTGTTTTTATAGAAAGTATTTGGAGTATATTTTTTTTTGTATCCATGGCAACAAGAGATTGATTAATTCACTAGTACTTAGCACTCACTGTATTCACCTCGAGCTATATCAAGGGAATTCACTTTTGGTGATACTATTTTGAAACATGTTATATTATGTGCTTAATTTGTTCATTTCTGCTAGATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAGGTTATTGAGCAGATTCTTCTCTCTTGATAGCTGCTATATTTTTGTCTTGAATAACGCTGACCTATAACAACATTTGACACTTAAATTTTTATTTGGTTGTTATAAGCAAAAAAGAGATGCAAAAAATCTAATTTTTAATGTGAGAAAAGAGGATAAACTTGTTAAATTTAAAATCTCAGAAGTAATCATATTTCAGCAATTCAAAATTAAATAATGCTTGTACATTATCAATGAATTTTGACCCTTACAAGATGGAGTTTTTATCTCTAATGGAATACAAAGTCACTGCCTGTTGTTAAATTTCCTCCTCAACCGGAGGCGGATGCTATATAGAGGTCTGTATTTACTTTTCCCGCTTGATCCTATCTGGTTGTCATGTTTTTCACTTAGCACTTTAAATACACATGAGCAAAGTTAGAACTTTGGTCAAAATAAGCAAAAGCATGATTAAAGGGAATATCTTGAATTGTTAATGCTTGATCTTTCTTTTGTTTTTTCCTTTTAAGTTTTGCTCTTTATAAGCATTATAGAAGTTTTAGGTAGTAGAAATCATGTCTCAACTATTGGAATGACGAAATCTGGTCAGGGTGATCCACAATATCTTTGCATGTTGTTATAGTCAGTTTTTGATTGTTGAACGTTGCCATTCTCTTTGATTTCTTACAGGAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGGGTAAGCTTTATTATCTTATTTATGTTATTTTCTCTGTAGGTGTTAATGATCACTACTGGCCAGCCCTCTCTGAGATGGGTGATCTAAAAATGAAAGTACATGTACAGTTAGTAGAAGTACTAGTCAATGACATTTGGCGTCTAGACACCAGATTCATGGCCTATTAATCCCCGTCTCGAAGGAACGATTTCTTTACTCATTTGCATATTTGAATAAAGTTGGCCCAAATTGAGTTGAGTTAATATAGAGAATTGATGTAGGTGACTGCAACTAGTTTGGGATTGATCGATTGAGGCATAATTATTATTATTGTTGTTGTAGGTATATTCACACTTGTGTATATGTTCCATTTTATTCATCCTATATGACTTCTTGATTTGTCTTGCTAAATTTCTAATTGGGCTCAAGTTCAGAATTTGACCCTGATACATTTGACCCTCAGTTGACCTATAAGATGCTAAACTTGATACAGTAACTTGTTGTGGTAATACTTCTACATGATGCTGAAATATCTGTCTTAACCTTGGTCTTGTAATTGCACTATAATATGTGATTTCAATTACTGTAGTGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAGGTATGACTTGCATTTTGTTAGTAGTTCTTATCCGTTGATTTTCCAGGAGCGTTCAGAATGTGTAATAATATGTTGTGAGACAATCTGCTTTTCTTTCGGTCTTGATCAAACTGCAGCCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCT</genome_strand>
        <mrna_strand>AGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG........................................................................................................................................................................TGCTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747305" ref_strand="+" ref_description="SGN-E747305 [GI|47104657]">
      <seq>aattaggggagaatcatcatcattcaacaacagctaaaaccctagattgagaaattgaagtattgaaaacctttatttgatctataacaacaatgccgcaagtgaagatcgtcgccaggaatttcatggacatggtggcttcattgcctgtcatgaaactcgacatgctttacgacaattcctttatctgtgaagccattcttagatcgttacctcccttagcgaagaagtatgtgctgcaaatgttgtatatagacataccaattacagccaagtcgatggaggagtgggtgcttccagatggattctcaaagcataaagttgccattgatagattgatacagctgagagtaatgacagaaacatttgacaggaaaaaggaagccatgtatcaactaaacccaaaatttcaatttaatcttcagaagcatatagtctatggtggagtcttaccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagaggcatatgctgtcgaacaatgggagtgctttctgctgaaccttataagctccagtgaagctggaaagaccacaaacataagctcttcgatgatgaaaatcttccagcgtggacttttaagtcagagagacgatagagaacctccaaggttgactgaaagtgggttccaattcttgctaatggacacaaatgcacagctttggtacatcatcagggagtacataacaaatgctgaggagcgaggagtggattcagcagatcttattgcatttcttttggagctaagctttcatgttactggcaaggcatacaatacaaacacaataactgatctccagagaagtataattaaggacctttcagatttgggattggtcaagctgcagcagggaaggaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccagcttccaaatctcattgttggtgctattaataaagagagtttatataaagcttttcaaaacggcattacttctgagcagatagtttctttccttcagcagaatgcacatcctagggttgccgagagaataccatctgtgccggagaatgttactgatcagattagattgtgggaatctgatctgaatcgggttgagatgacgccagcccacttctacgatgaattcccttctaaagatgtctttgaggctgcctgtgattttgccagagaatatggaggattactgtgggaggactctaagcgcatgcgtctcgttgttaaagctgatattttagccgagatgaaggaatttcttcgtcgtcaaaagcaataactcttctttgcatactgtcttcatttaaatgaagggtttcatcagttatgtccatctatatatttattcccaacttaacttgtacatgaattttgttgtgggtgtattgtatttcattgtgcttcgatttccttctttcgacaccttgtgatgttgtactaataatgggactacaaatcatcgtcaaaactattgatagcctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="4553" stop="98941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4853" g_stop="5057" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5058" i_stop="5529" i_length="472">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5530" g_stop="5697" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="373" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5698" i_stop="6363" i_length="666">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6364" g_stop="6432" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="442" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6433" i_stop="7000" i_length="568">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7001" g_stop="7094" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="536" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7095" i_stop="7262" i_length="168">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7263" g_stop="7363" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="637" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7364" i_stop="7494" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7495" g_stop="7543" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="686" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7544" i_stop="7621" i_length="78">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="7622" g_stop="7681" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="746" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="7682" i_stop="8357" i_length="676">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="8358" g_stop="8426" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="815" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="8427" i_stop="8737" i_length="311">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="8738" g_stop="8821" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="899" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="8822" i_stop="8916" i_length="95">
            <donor d_prob="0.434" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="8917" g_stop="9000" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="900" r_stop="983" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="9001" i_stop="9339" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="9340" g_stop="9425" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="984" r_stop="1069" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="9426" i_stop="9773" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="9774" g_stop="9864" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1070" r_stop="1160" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="9865" i_stop="10619" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="10620" g_stop="10700" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1161" r_stop="1241" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="10701" i_stop="10951" i_length="251">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="10952" g_stop="11026" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1242" r_stop="1316" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="11027" i_stop="11121" i_length="95">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="11122" g_stop="11467" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1317" r_stop="1662" r_length="346" r_score="0.997"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="11468" i_stop="11907" i_length="440">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="11908" g_stop="11923" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1663" r_stop="1678" r_length="16" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E747305" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4853" e_stop="5057"/>
          <exon e_start="5530" e_stop="5697"/>
          <exon e_start="6364" e_stop="6432"/>
          <exon e_start="7001" e_stop="7094"/>
          <exon e_start="7263" e_stop="7363"/>
          <exon e_start="7495" e_stop="7543"/>
          <exon e_start="7622" e_stop="7681"/>
          <exon e_start="8358" e_stop="8426"/>
          <exon e_start="8738" e_stop="8821"/>
          <exon e_start="8917" e_stop="9000"/>
          <exon e_start="9340" e_stop="9425"/>
          <exon e_start="9774" e_stop="9864"/>
          <exon e_start="10620" e_stop="10700"/>
          <exon e_start="10952" e_stop="11026"/>
          <exon e_start="11122" e_stop="11467"/>
          <exon e_start="11908" e_stop="11923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAGGTATTCTAAAAATCCCCAATTTGATCGAATGTTAAGAGTTTTTCTTGCTGCACAACCAGTTATAGGATTAATTTCTGCTTGTAAAAATGGATGTAATTTCACCATTTTAGCATATAGTGATATGTACTGTGTACATTTGGATGCAAAAGTTGTTTACTTTGTCTTTAAGATTATTATTATGGAGAAATGAACTTCAAGCTATAGTCATAGATGGATGAAGTTAATCAGCAGCAAGTGCTGTGCTGACACAAGTATAAACATACACAAGCACAAATTTTTTAATGTTTGACTGTTTTTATAGAAAGTATTTGGAGTATATTTTTTTTTGTATCCATGGCAACAAGAGATTGATTAATTCACTAGTACTTAGCACTCACTGTATTCACCTCGAGCTATATCAAGGGAATTCACTTTTGGTGATACTATTTTGAAACATGTTATATTATGTGCTTAATTTGTTCATTTCTGCTAGATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAGGTTATTGAGCAGATTCTTCTCTCTTGATAGCTGCTATATTTTTGTCTTGAATAACGCTGACCTATAACAACATTTGACACTTAAATTTTTATTTGGTTGTTATAAGCAAAAAAGAGATGCAAAAAATCTAATTTTTAATGTGAGAAAAGAGGATAAACTTGTTAAATTTAAAATCTCAGAAGTAATCATATTTCAGCAATTCAAAATTAAATAATGCTTGTACATTATCAATGAATTTTGACCCTTACAAGATGGAGTTTTTATCTCTAATGGAATACAAAGTCACTGCCTGTTGTTAAATTTCCTCCTCAACCGGAGGCGGATGCTATATAGAGGTCTGTATTTACTTTTCCCGCTTGATCCTATCTGGTTGTCATGTTTTTCACTTAGCACTTTAAATACACATGAGCAAAGTTAGAACTTTGGTCAAAATAAGCAAAAGCATGATTAAAGGGAATATCTTGAATTGTTAATGCTTGATCTTTCTTTTGTTTTTTCCTTTTAAGTTTTGCTCTTTATAAGCATTATAGAAGTTTTAGGTAGTAGAAATCATGTCTCAACTATTGGAATGACGAAATCTGGTCAGGGTGATCCACAATATCTTTGCATGTTGTTATAGTCAGTTTTTGATTGTTGAACGTTGCCATTCTCTTTGATTTCTTACAGGAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGGGTAAGCTTTATTATCTTATTTATGTTATTTTCTCTGTAGGTGTTAATGATCACTACTGGCCAGCCCTCTCTGAGATGGGTGATCTAAAAATGAAAGTACATGTACAGTTAGTAGAAGTACTAGTCAATGACATTTGGCGTCTAGACACCAGATTCATGGCCTATTAATCCCCGTCTCGAAGGAACGATTTCTTTACTCATTTGCATATTTGAATAAAGTTGGCCCAAATTGAGTTGAGTTAATATAGAGAATTGATGTAGGTGACTGCAACTAGTTTGGGATTGATCGATTGAGGCATAATTATTATTATTGTTGTTGTAGGTATATTCACACTTGTGTATATGTTCCATTTTATTCATCCTATATGACTTCTTGATTTGTCTTGCTAAATTTCTAATTGGGCTCAAGTTCAGAATTTGACCCTGATACATTTGACCCTCAGTTGACCTATAAGATGCTAAACTTGATACAGTAACTTGTTGTGGTAATACTTCTACATGATGCTGAAATATCTGTCTTAACCTTGGTCTTGTAATTGCACTATAATATGTGATTTCAATTACTGTAGTGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAGGTATGACTTGCATTTTGTTAGTAGTTCTTATCCGTTGATTTTCCAGGAGCGTTCAGAATGTGTAATAATATGTTGTGAGACAATCTGCTTTTCTTTCGGTCTTGATCAAACTGCAGCCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAGGTACGTCCACCTCAGTGTTATGGATATATATTTACTCGCAGAAAACATATGTATAGTTCTTTGTCCTCATGTGTATTTATGATTTTGTAATAATCGATATAATCTCCATGAGTTCATGCCTTCTTAAGCAGAGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTGGTACGATTTACTGAATTATCTGAATCAATTAGTGTTCTTTTTTGTTGGGAAATTGTATTGACTGGTGGCATATTACAGCTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAGGTATTGCTGACCACCTCCTTCTCTCCCTGCATGTGTGTGTATGTGTGTCTCAAGCTCCATTGGTTCATTGGGTGGTGTTGTAATTCAGTTACATTTGACATTTGCTTATCCCTCACTTTTGCGGCTAGTCTTCTGATAGACTTTGGAGATAGGTAGGGAGGAATTTTCAGAGATGCAGCTTCGGCCTTTGTAGAGCTTGCTATAATTATATCACCTACTCTGCCTCTCTAAGGTCGTCAAAGCGAAAGCATTCCCAAGCCTGAATAGAGGAAGAGAGTTGAGGGAAACCGGTGGCGAATGTAGCAATAGTCAAACTATTTTGAATACTGAAAAAATGTGCAGATTGGATACAGGCGTTTCATACAAGATCATATAGCTAACCCCAATTAGTTTGGGGATTGGAACCTAGTTGAGTTGAGCTTATTAGTTCCACCTTAGATTTTATCGTTGCTGATAACATATTTTAGGCACTTTTTCCTTGTTTCCTTACCTCTTTAAATTAGTTAATACAAGCAAGAATCAAGAAGATATTCTTTCTTTGATTTAAGATTTTGGTTGAGAAGATATTGTGCCTATGACCATTATTTGGATTGTCTAGTATGGACTTCTATTTGTATAACTTTTGGACAATTTAATGATATTAAATGATTACTCTGTATTTTTCATATTAATGCAGGAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAGGTATTATTAGACAGTTCTAGAGCTTCTTGAATTAAGTTTGTCCTGGAGCTGTAGTAATGATACCATCTTTTGAACTCTAAATGCTTGAATTTTAGTTAGTTCTGGTTCTGGAGCACTCAGATGTTTGGTTGAAAAGTGGTGAATTTGTTTTTGCAGAAAGTTTTGTACTTTGACTTTAAAAAACAATATTTGAAAAACTGAAAAATATTGTGACGAAGTCTTTCAACCATTTTCCCAACCACACAGTTGTAATCTTCATTTCTTCAGTATGCTCAAGTTTCGTATGTTTGTTGAATTTTCTTCTGATATAGGCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAGGCAAGTTTCAGCTGCTATTTATTTATTGACCAGCATTGTCTTGTATCAGAGACAACTAACTAAAAAACTATCTAATAAAGCAACTGTATATGGAGTGCTTGCTATATTTGTTGAAGATTTTTTTTTTGATGATGTGTGGAATGCTTATATTTGTATAAAAGCAAAACGTTGACAAAGATTGATGATGTGGGACATTTTTGTTGGAAGTTCTTAGTAATTCTTCATCAGCTACTTATTGTGGTCTAATTGATAGATGTTGATTAATTGCACTCCTCTCAGAAAAGGTCCTTCTATAGTTTTGTTTCTGGTCCTTTAATCTACTTATCATGTTTAATAGTAGTTACACACCTTTCAAAATTAGCACACCCTTGAATGCATTAATGGAATTAGTGAGCCTATTGTGCTTCTGGTGCCAAAGTTCTTACTGCAGTACCGCACTTAAATATTTTGTATGAAGTAGAAAGAGTTAAATATGACATAATGGAAACTGTTGCTTGAGTTGTCTGGACTGGTTATATTTGAGTTCCAGTTATCCTATCCTTAGTTGTCAAAATACATTGACTTAGATGTCATGGTCCCCCCAAAAAGGAACAATCTGTCATATGGTGATTCGTCAGTCAAAAATGTTTCAAGTGATACTATGAAGTATTCTGTACGGATGTAATTATACAACACAAATGAGCAGCTACTCTACAATTTATTTTGCTTGTAGTTAAGTTTTGACTGCTGTTGTGATTTGAATGCATGGATTGCAGATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAGGTTCCTTCACTATTTCTCATAGCGTTGAAACTGAAAGATAGCTTTAGAAACCAAATATTACTCTAACTGCACCACATTTAATTGACACTCCTGTAGAATTTGTTCTTGACTAGGCACACGTTGCCAAAATTATGGCGGACCAAAGTCTATTCAAACAATCCATTGACAGAGATATAACTTATGAAAAGATTTATTGGAAAATAAGTTCTTGTCCAACTAACTTATTCAACTGCCACTTTCTCATGCCACAGATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAAGTGGGTATCAAGCACCATGTTATTTGCATTGCAACCTAAACTTCGCTTTTTAATATGTTTGTTTGCGTAACATGATTGTGGTTGCTTACTTTTAGGATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGATAGCCTAAAAGAGCCTTGTCAATCTGTTTGGGTTTACACAAACATAATATTATGTATTGCTATGACTATGATCTTTTATCTTTTCCAACTAGTTGTGGATATAAACATAATATCTACATAGAATCATTTTGTCAATTATACATCCCCATCTCTACTTTAAAATCTTGGGATGTTGTTATCATGAAAAATTTAAATTAGATTGTTCTTATCCTTGACCACATCTTTGGACAAAGATCCATTTTGGGTTTATATAAGCAAATCAAGCAACTCATAATTCAGTAGGTCCTCCAAAAATAAGCTCTTTCTTGGAAATTTCTTCTGAGCCTATCTGGGGAAATTTTTGCATATCTAGGCATGTCACCATCACTATTATTTCTTTTAAAAAAATCAACAATCTAAACAGTTATAAATCACATCAATATGCTTTCTAATGAACTCTTCCAAGCACCCTTAAAAACATAACAACAA</genome_strand>
        <mrna_strand>AATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG........................................................................................................................................................................TGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAG...................................................................................................................................AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTG..............................................................................CTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAG.......................................................................................................................................................................................................................................................................................................................GCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG...............................................................................................GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG...........................................................................................................................................................................................................................................................ATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAA...............................................................................................GATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGATAGCCTAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328430" ref_strand="+" ref_description="SGN-E328430 [cTOC-21-P17]">
      <seq>tttaatcttcagaagcatatagtctatggtggagtcttaccaagggaaccaatgccttctaatatcactgtgaggcttcctagcttggaggagttagaggcatatgctgtcgaacaatgggagtgctttctgctgaaccttataagctccagtgaagctggaaagaccacaaacataagctcttcgatgatgaaaatcttccagcgtggacttttaagtcagagagacgatagagaacctccaaggttgactgaaagtgggttccaattcttgctaatggacacaaatgcacagctttggtacatcatcagggagtacataacaaatgctgaggagcgaggagtggattcagcagatcttattgcatttcttttggagctaagctttcatgttactggcaaggcatacaatacaaacacaataactgatctccagagaagtataattaaggacctttcagatttgggattggtcaagctgcagcagggaaggaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccagcttcccaatctcattgttggtgctattaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="6104" stop="10118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6404" g_stop="6432" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6433" i_stop="7000" i_length="568">
            <donor d_prob="0.970" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7001" g_stop="7094" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="123" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7095" i_stop="7262" i_length="168">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.802" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7263" g_stop="7363" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="224" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7364" i_stop="7494" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7495" g_stop="7543" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="273" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7544" i_stop="7621" i_length="78">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7622" g_stop="7681" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="333" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7682" i_stop="8357" i_length="676">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8358" g_stop="8426" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="402" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8427" i_stop="8737" i_length="311">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8738" g_stop="8821" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="486" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="8822" i_stop="8916" i_length="95">
            <donor d_prob="0.434" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="8917" g_stop="9000" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="570" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9001" i_stop="9339" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9340" g_stop="9425" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="656" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="9426" i_stop="9773" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9774" g_stop="9818" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="701" r_length="45" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E328430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6404" e_stop="6432"/>
          <exon e_start="7001" e_stop="7094"/>
          <exon e_start="7263" e_stop="7363"/>
          <exon e_start="7495" e_stop="7543"/>
          <exon e_start="7622" e_stop="7681"/>
          <exon e_start="8358" e_stop="8426"/>
          <exon e_start="8738" e_stop="8821"/>
          <exon e_start="8917" e_stop="9000"/>
          <exon e_start="9340" e_stop="9425"/>
          <exon e_start="9774" e_stop="9818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCTTCAGAAGCATATAGTCTATGGGTAAGCTTTATTATCTTATTTATGTTATTTTCTCTGTAGGTGTTAATGATCACTACTGGCCAGCCCTCTCTGAGATGGGTGATCTAAAAATGAAAGTACATGTACAGTTAGTAGAAGTACTAGTCAATGACATTTGGCGTCTAGACACCAGATTCATGGCCTATTAATCCCCGTCTCGAAGGAACGATTTCTTTACTCATTTGCATATTTGAATAAAGTTGGCCCAAATTGAGTTGAGTTAATATAGAGAATTGATGTAGGTGACTGCAACTAGTTTGGGATTGATCGATTGAGGCATAATTATTATTATTGTTGTTGTAGGTATATTCACACTTGTGTATATGTTCCATTTTATTCATCCTATATGACTTCTTGATTTGTCTTGCTAAATTTCTAATTGGGCTCAAGTTCAGAATTTGACCCTGATACATTTGACCCTCAGTTGACCTATAAGATGCTAAACTTGATACAGTAACTTGTTGTGGTAATACTTCTACATGATGCTGAAATATCTGTCTTAACCTTGGTCTTGTAATTGCACTATAATATGTGATTTCAATTACTGTAGTGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAGGTATGACTTGCATTTTGTTAGTAGTTCTTATCCGTTGATTTTCCAGGAGCGTTCAGAATGTGTAATAATATGTTGTGAGACAATCTGCTTTTCTTTCGGTCTTGATCAAACTGCAGCCTGAATATAATTTTGGCAACTATTTTTATGACTTGCAACTGTCGCAACCAGTGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAGGTACGTCCACCTCAGTGTTATGGATATATATTTACTCGCAGAAAACATATGTATAGTTCTTTGTCCTCATGTGTATTTATGATTTTGTAATAATCGATATAATCTCCATGAGTTCATGCCTTCTTAAGCAGAGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTGGTACGATTTACTGAATTATCTGAATCAATTAGTGTTCTTTTTTGTTGGGAAATTGTATTGACTGGTGGCATATTACAGCTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAGGTATTGCTGACCACCTCCTTCTCTCCCTGCATGTGTGTGTATGTGTGTCTCAAGCTCCATTGGTTCATTGGGTGGTGTTGTAATTCAGTTACATTTGACATTTGCTTATCCCTCACTTTTGCGGCTAGTCTTCTGATAGACTTTGGAGATAGGTAGGGAGGAATTTTCAGAGATGCAGCTTCGGCCTTTGTAGAGCTTGCTATAATTATATCACCTACTCTGCCTCTCTAAGGTCGTCAAAGCGAAAGCATTCCCAAGCCTGAATAGAGGAAGAGAGTTGAGGGAAACCGGTGGCGAATGTAGCAATAGTCAAACTATTTTGAATACTGAAAAAATGTGCAGATTGGATACAGGCGTTTCATACAAGATCATATAGCTAACCCCAATTAGTTTGGGGATTGGAACCTAGTTGAGTTGAGCTTATTAGTTCCACCTTAGATTTTATCGTTGCTGATAACATATTTTAGGCACTTTTTCCTTGTTTCCTTACCTCTTTAAATTAGTTAATACAAGCAAGAATCAAGAAGATATTCTTTCTTTGATTTAAGATTTTGGTTGAGAAGATATTGTGCCTATGACCATTATTTGGATTGTCTAGTATGGACTTCTATTTGTATAACTTTTGGACAATTTAATGATATTAAATGATTACTCTGTATTTTTCATATTAATGCAGGAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAGGTATTATTAGACAGTTCTAGAGCTTCTTGAATTAAGTTTGTCCTGGAGCTGTAGTAATGATACCATCTTTTGAACTCTAAATGCTTGAATTTTAGTTAGTTCTGGTTCTGGAGCACTCAGATGTTTGGTTGAAAAGTGGTGAATTTGTTTTTGCAGAAAGTTTTGTACTTTGACTTTAAAAAACAATATTTGAAAAACTGAAAAATATTGTGACGAAGTCTTTCAACCATTTTCCCAACCACACAGTTGTAATCTTCATTTCTTCAGTATGCTCAAGTTTCGTATGTTTGTTGAATTTTCTTCTGATATAGGCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAA</genome_strand>
        <mrna_strand>TTTAATCTTCAGAAGCATATAGTCTATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG........................................................................................................................................................................TGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAG...................................................................................................................................AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTG..............................................................................CTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAG.......................................................................................................................................................................................................................................................................................................................GCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG...............................................................................................GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAGCTTCCCAATCTCATTGTTGGTGCTATTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320410" ref_strand="+" ref_description="SGN-E320410 [cTOB-22-O8]">
      <seq>tttctgctgaaccttataagctccagtgaagctggaaagaccacaaacataagctcttcgatgatgaaaatcttccagcgtgggacttnttaagtcagagagacgatagagaacctccaaggttgactgaaagtgggttccaattcttgctaatggacacaaatgcacagctttggtacatcatcagggagtacataacaaatgctgaggagcgaggagtggattcagcagatcttattgcatttcttttggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="6966" stop="8703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7266" g_stop="7363" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7364" i_stop="7494" i_length="131">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7495" g_stop="7543" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="149" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7544" i_stop="7621" i_length="78">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7622" g_stop="7681" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="209" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7682" i_stop="8357" i_length="676">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8358" g_stop="8403" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="255" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E320410" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7266" e_stop="7363"/>
          <exon e_start="7495" e_stop="7543"/>
          <exon e_start="7622" e_stop="7681"/>
          <exon e_start="8358" e_stop="8403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGT-GGACTT-TTAAGTCAGAGGTACGTCCACCTCAGTGTTATGGATATATATTTACTCGCAGAAAACATATGTATAGTTCTTTGTCCTCATGTGTATTTATGATTTTGTAATAATCGATATAATCTCCATGAGTTCATGCCTTCTTAAGCAGAGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTGGTACGATTTACTGAATTATCTGAATCAATTAGTGTTCTTTTTTGTTGGGAAATTGTATTGACTGGTGGCATATTACAGCTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAGGTATTGCTGACCACCTCCTTCTCTCCCTGCATGTGTGTGTATGTGTGTCTCAAGCTCCATTGGTTCATTGGGTGGTGTTGTAATTCAGTTACATTTGACATTTGCTTATCCCTCACTTTTGCGGCTAGTCTTCTGATAGACTTTGGAGATAGGTAGGGAGGAATTTTCAGAGATGCAGCTTCGGCCTTTGTAGAGCTTGCTATAATTATATCACCTACTCTGCCTCTCTAAGGTCGTCAAAGCGAAAGCATTCCCAAGCCTGAATAGAGGAAGAGAGTTGAGGGAAACCGGTGGCGAATGTAGCAATAGTCAAACTATTTTGAATACTGAAAAAATGTGCAGATTGGATACAGGCGTTTCATACAAGATCATATAGCTAACCCCAATTAGTTTGGGGATTGGAACCTAGTTGAGTTGAGCTTATTAGTTCCACCTTAGATTTTATCGTTGCTGATAACATATTTTAGGCACTTTTTCCTTGTTTCCTTACCTCTTTAAATTAGTTAATACAAGCAAGAATCAAGAAGATATTCTTTCTTTGATTTAAGATTTTGGTTGAGAAGATATTGTGCCTATGACCATTATTTGGATTGTCTAGTATGGACTTCTATTTGTATAACTTTTGGACAATTTAATGATATTAAATGATTACTCTGTATTTTTCATATTAATGCAGGAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGC</genome_strand>
        <mrna_strand>TTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGGACTTNTTAAGTCAGAG...................................................................................................................................AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTG..............................................................................CTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324217" ref_strand="+" ref_description="SGN-E324217 [cTOC-4-A13]">
      <seq>tggattcagcagatcttattgcatttctttgggagctaagctttcatgttactggcaaggcatacaatacaaacacaataactgatctccagagaagaataattaaagacctttcagatttgggattgatcaatctgcagcagggaaagaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccagcttccaaatctcattgttggtgctattaataaagagagtttatataaagcttttcaaaacggcattacttctgagcagatagtttctttccttcagcagaatgcacatcctanggttgccgagagaataccatctgtgccggagaatgttactgatcagattagattgtgggaatctgatctgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="8068" stop="11279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8368" g_stop="8426" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8427" i_stop="8737" i_length="311">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8738" g_stop="8821" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="143" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8822" i_stop="8916" i_length="95">
            <donor d_prob="0.434" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8917" g_stop="9000" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="227" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9001" i_stop="9339" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9340" g_stop="9425" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="313" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9426" i_stop="9773" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9774" g_stop="9864" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="404" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9865" i_stop="10619" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10620" g_stop="10700" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="485" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10701" i_stop="10951" i_length="251">
            <donor d_prob="0.704" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10952" g_stop="10979" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="513" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E324217" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8368" e_stop="8426"/>
          <exon e_start="8738" e_stop="8821"/>
          <exon e_start="8917" e_stop="9000"/>
          <exon e_start="9340" e_stop="9425"/>
          <exon e_start="9774" e_stop="9864"/>
          <exon e_start="10620" e_stop="10700"/>
          <exon e_start="10952" e_stop="10979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAGGTATTATTAGACAGTTCTAGAGCTTCTTGAATTAAGTTTGTCCTGGAGCTGTAGTAATGATACCATCTTTTGAACTCTAAATGCTTGAATTTTAGTTAGTTCTGGTTCTGGAGCACTCAGATGTTTGGTTGAAAAGTGGTGAATTTGTTTTTGCAGAAAGTTTTGTACTTTGACTTTAAAAAACAATATTTGAAAAACTGAAAAATATTGTGACGAAGTCTTTCAACCATTTTCCCAACCACACAGTTGTAATCTTCATTTCTTCAGTATGCTCAAGTTTCGTATGTTTGTTGAATTTTCTTCTGATATAGGCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAGGCAAGTTTCAGCTGCTATTTATTTATTGACCAGCATTGTCTTGTATCAGAGACAACTAACTAAAAAACTATCTAATAAAGCAACTGTATATGGAGTGCTTGCTATATTTGTTGAAGATTTTTTTTTTGATGATGTGTGGAATGCTTATATTTGTATAAAAGCAAAACGTTGACAAAGATTGATGATGTGGGACATTTTTGTTGGAAGTTCTTAGTAATTCTTCATCAGCTACTTATTGTGGTCTAATTGATAGATGTTGATTAATTGCACTCCTCTCAGAAAAGGTCCTTCTATAGTTTTGTTTCTGGTCCTTTAATCTACTTATCATGTTTAATAGTAGTTACACACCTTTCAAAATTAGCACACCCTTGAATGCATTAATGGAATTAGTGAGCCTATTGTGCTTCTGGTGCCAAAGTTCTTACTGCAGTACCGCACTTAAATATTTTGTATGAAGTAGAAAGAGTTAAATATGACATAATGGAAACTGTTGCTTGAGTTGTCTGGACTGGTTATATTTGAGTTCCAGTTATCCTATCCTTAGTTGTCAAAATACATTGACTTAGATGTCATGGTCCCCCCAAAAAGGAACAATCTGTCATATGGTGATTCGTCAGTCAAAAATGTTTCAAGTGATACTATGAAGTATTCTGTACGGATGTAATTATACAACACAAATGAGCAGCTACTCTACAATTTATTTTGCTTGTAGTTAAGTTTTGACTGCTGTTGTGATTTGAATGCATGGATTGCAGATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAGGTTCCTTCACTATTTCTCATAGCGTTGAAACTGAAAGATAGCTTTAGAAACCAAATATTACTCTAACTGCACCACATTTAATTGACACTCCTGTAGAATTTGTTCTTGACTAGGCACACGTTGCCAAAATTATGGCGGACCAAAGTCTATTCAAACAATCCATTGACAGAGATATAACTTATGAAAAGATTTATTGGAAAATAAGTTCTTGTCCAACTAACTTATTCAACTGCCACTTTCTCATGCCACAGATTAGATTGTGGGAATCTGATCTGAATC</genome_strand>
        <mrna_strand>TGGATTCAGCAGATCTTATTGCATTTCTTTGGGAGCTAAGCTTTCATGTTACTGGCAAG.......................................................................................................................................................................................................................................................................................................................GCATACAATACAAACACAATAACTGATCTCCAGAGAAGAATAATTAAAGACCTTTCAGATTTGGGATTGATCAATCTGCAGCAG...............................................................................................GGAAAGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTANGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG...........................................................................................................................................................................................................................................................ATTAGATTGTGGGAATCTGATCTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541967" ref_strand="+" ref_description="SGN-E541967 [TUS-63-A14](-)">
      <seq>aattaaggacctttcagatttgggattggtcaagctgcagcaggaaaggaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccagcttccaaatctcattgttggtgctattaataaagagagtttatataaagcttttcaaaacggcattacttctgagcagatagtttctttccttcagcagaatgcacatcctagggttgccgagagaataccatctgtgccggagaatgttactgatcagattagattgtgggaatctgatctgaatcgggttgagatgacgccagcccacttctacgatgaattcccttctaaagatgtctttgaggctgcctgtgattttgccagagaatatggaggattactgtgggaggactctaagcgcatgcgtctcgttgttaaagctgatattttagccgagatgaaggaatttcttcgtcgtcaaaagcaataactcttctttgcatactgtcttcatttaaatgaagggtttcatcagttatgtccatctatatatttattcccaacttaacttgtacatgaattttgttgtgggtgtattgtatttcattgtgcttcgatttccttctttcgacaccttgtgatgttgtactaataatgggactacaaatcatcgtcaaaactattgattagcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="8479" stop="11767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8779" g_stop="8821" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8822" i_stop="8916" i_length="95">
            <donor d_prob="0.434" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8917" g_stop="9000" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="127" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9001" i_stop="9339" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9340" g_stop="9425" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="213" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9426" i_stop="9773" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9774" g_stop="9864" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="304" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9865" i_stop="10619" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10620" g_stop="10700" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="385" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10701" i_stop="10951" i_length="251">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10952" g_stop="11026" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="460" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11027" i_stop="11121" i_length="95">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11122" g_stop="11467" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="807" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E541967" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8779" e_stop="8821"/>
          <exon e_start="8917" e_stop="9000"/>
          <exon e_start="9340" e_stop="9425"/>
          <exon e_start="9774" e_stop="9864"/>
          <exon e_start="10620" e_stop="10700"/>
          <exon e_start="10952" e_stop="11026"/>
          <exon e_start="11122" e_stop="11467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAGGCAAGTTTCAGCTGCTATTTATTTATTGACCAGCATTGTCTTGTATCAGAGACAACTAACTAAAAAACTATCTAATAAAGCAACTGTATATGGAGTGCTTGCTATATTTGTTGAAGATTTTTTTTTTGATGATGTGTGGAATGCTTATATTTGTATAAAAGCAAAACGTTGACAAAGATTGATGATGTGGGACATTTTTGTTGGAAGTTCTTAGTAATTCTTCATCAGCTACTTATTGTGGTCTAATTGATAGATGTTGATTAATTGCACTCCTCTCAGAAAAGGTCCTTCTATAGTTTTGTTTCTGGTCCTTTAATCTACTTATCATGTTTAATAGTAGTTACACACCTTTCAAAATTAGCACACCCTTGAATGCATTAATGGAATTAGTGAGCCTATTGTGCTTCTGGTGCCAAAGTTCTTACTGCAGTACCGCACTTAAATATTTTGTATGAAGTAGAAAGAGTTAAATATGACATAATGGAAACTGTTGCTTGAGTTGTCTGGACTGGTTATATTTGAGTTCCAGTTATCCTATCCTTAGTTGTCAAAATACATTGACTTAGATGTCATGGTCCCCCCAAAAAGGAACAATCTGTCATATGGTGATTCGTCAGTCAAAAATGTTTCAAGTGATACTATGAAGTATTCTGTACGGATGTAATTATACAACACAAATGAGCAGCTACTCTACAATTTATTTTGCTTGTAGTTAAGTTTTGACTGCTGTTGTGATTTGAATGCATGGATTGCAGATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAGGTTCCTTCACTATTTCTCATAGCGTTGAAACTGAAAGATAGCTTTAGAAACCAAATATTACTCTAACTGCACCACATTTAATTGACACTCCTGTAGAATTTGTTCTTGACTAGGCACACGTTGCCAAAATTATGGCGGACCAAAGTCTATTCAAACAATCCATTGACAGAGATATAACTTATGAAAAGATTTATTGGAAAATAAGTTCTTGTCCAACTAACTTATTCAACTGCCACTTTCTCATGCCACAGATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAAGTGGGTATCAAGCACCATGTTATTTGCATTGCAACCTAAACTTCGCTTTTTAATATGTTTGTTTGCGTAACATGATTGTGGTTGCTTACTTTTAGGATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGA-TAGCCTAAAAGA</genome_strand>
        <mrna_strand>AATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG...............................................................................................GAAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG...........................................................................................................................................................................................................................................................ATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAA...............................................................................................GATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGATTAGCCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282142" ref_strand="+" ref_description="SGN-E282142 [cLES-4-E14]">
      <seq>acctttcagatttgggattggtcaagctgcagcagggaaggaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccagcttccaaatctcattgttggtgctattaataaagagagtttatataaagcttttcaaaacggcattacttctgagcagatagtttctttccttcagcagaatgcacatcctagggttgccgagagaataccatctgtgccggagaatgttactgatcagattagattgtgggaatctgatctgaatcgggttgagatgacgccagcccacttctacgatgaattcccttctaaagatgtctttgaggctgcctgtgattttgccagagaatatggaggattactgtgggaggactctaagcgcatgcgtctcgttgttaaagctgatattttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="8487" stop="11521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8787" g_stop="8821" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8822" i_stop="8916" i_length="95">
            <donor d_prob="0.434" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8917" g_stop="9000" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="119" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9001" i_stop="9339" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9340" g_stop="9425" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="205" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9426" i_stop="9773" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9774" g_stop="9864" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="296" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9865" i_stop="10619" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10620" g_stop="10700" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="377" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10701" i_stop="10951" i_length="251">
            <donor d_prob="0.704" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10952" g_stop="11026" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="452" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11027" i_stop="11121" i_length="95">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11122" g_stop="11221" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="552" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E282142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8787" e_stop="8821"/>
          <exon e_start="8917" e_stop="9000"/>
          <exon e_start="9340" e_stop="9425"/>
          <exon e_start="9774" e_stop="9864"/>
          <exon e_start="10620" e_stop="10700"/>
          <exon e_start="10952" e_stop="11026"/>
          <exon e_start="11122" e_stop="11221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAGGCAAGTTTCAGCTGCTATTTATTTATTGACCAGCATTGTCTTGTATCAGAGACAACTAACTAAAAAACTATCTAATAAAGCAACTGTATATGGAGTGCTTGCTATATTTGTTGAAGATTTTTTTTTTGATGATGTGTGGAATGCTTATATTTGTATAAAAGCAAAACGTTGACAAAGATTGATGATGTGGGACATTTTTGTTGGAAGTTCTTAGTAATTCTTCATCAGCTACTTATTGTGGTCTAATTGATAGATGTTGATTAATTGCACTCCTCTCAGAAAAGGTCCTTCTATAGTTTTGTTTCTGGTCCTTTAATCTACTTATCATGTTTAATAGTAGTTACACACCTTTCAAAATTAGCACACCCTTGAATGCATTAATGGAATTAGTGAGCCTATTGTGCTTCTGGTGCCAAAGTTCTTACTGCAGTACCGCACTTAAATATTTTGTATGAAGTAGAAAGAGTTAAATATGACATAATGGAAACTGTTGCTTGAGTTGTCTGGACTGGTTATATTTGAGTTCCAGTTATCCTATCCTTAGTTGTCAAAATACATTGACTTAGATGTCATGGTCCCCCCAAAAAGGAACAATCTGTCATATGGTGATTCGTCAGTCAAAAATGTTTCAAGTGATACTATGAAGTATTCTGTACGGATGTAATTATACAACACAAATGAGCAGCTACTCTACAATTTATTTTGCTTGTAGTTAAGTTTTGACTGCTGTTGTGATTTGAATGCATGGATTGCAGATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAGGTTCCTTCACTATTTCTCATAGCGTTGAAACTGAAAGATAGCTTTAGAAACCAAATATTACTCTAACTGCACCACATTTAATTGACACTCCTGTAGAATTTGTTCTTGACTAGGCACACGTTGCCAAAATTATGGCGGACCAAAGTCTATTCAAACAATCCATTGACAGAGATATAACTTATGAAAAGATTTATTGGAAAATAAGTTCTTGTCCAACTAACTTATTCAACTGCCACTTTCTCATGCCACAGATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAAGTGGGTATCAAGCACCATGTTATTTGCATTGCAACCTAAACTTCGCTTTTTAATATGTTTGTTTGCGTAACATGATTGTGGTTGCTTACTTTTAGGATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAG</genome_strand>
        <mrna_strand>ACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG...............................................................................................GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG...........................................................................................................................................................................................................................................................ATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAA...............................................................................................GATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282180" ref_strand="+" ref_description="SGN-E282180 [cLES-4-H22]">
      <seq>acctttcagatttgggattggtcaagctgcagcagggaaggaaagagagttggtttattccgaccaaactggcgaccaacctgtcaattagcttagcggatacaactactaggaaacagggttttatcgttattgaaacaaacttcagactgtatgcatattcaacatcaaaattgcactgtgagatcctacgcctttttgcaagggtggaataccaacttccaaatctcattgttggtgctatttaataaagagagtttatataaagcttttcaaaacggcattacttctgagcagatagttactttccttcagcagaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="8487" stop="10946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8787" g_stop="8821" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8822" i_stop="8916" i_length="95">
            <donor d_prob="0.434" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8917" g_stop="9000" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="119" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9001" i_stop="9339" i_length="339">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9340" g_stop="9425" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="205" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9426" i_stop="9773" i_length="348">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9774" g_stop="9864" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="297" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9865" i_stop="10619" i_length="755">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10620" g_stop="10646" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="324" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E282180" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8787" e_stop="8821"/>
          <exon e_start="8917" e_stop="9000"/>
          <exon e_start="9340" e_stop="9425"/>
          <exon e_start="9774" e_stop="9864"/>
          <exon e_start="10620" e_stop="10646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAGGTGAATACTCCTTGTTGCCCCATCAATGAGCTCACGAGAGTGAAAAGATTTGTCTTTTTTATTATGTTCTTAATTACCCATTTGATGCTGTTTAGGGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAGGTATGCTGCACTCGCAAGTGTTCCCTAGAGTAGTTGGGTCTAGTTACACAGAAATCCAATTTATTTATTTGTTTTCTATCTTTGTTCTTACAGTTTTCTTATAAAGCAAGTGTGTACAGAAATTTTTGAATTTTATGCTTCCTGTCATCCAGATTTTTTTTGATAATGAAAAAAAATAAATAAAAAAATCTGGATGACAGGAAGCATAAAATTCTAAATTTCTGTATACACTTGCTTTATAAGAAAACCGTAAGAATAAAGATAGCTTAGTTTGAAACGAGTTCAATGATACCTTACTGACTGCAAATGCATCTTTGCCTTCCCACCCACACTCATCAGGGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAGGTACCAAACGATTTGCTGCTGCTGCTTGTGTTTTTTTCTGTAGTTTGGTTGAGAAAAGAGATCATATGGAAAGAACAGGTGCTAACTCTCCTCTTGATAGCATTACCTGGACTCTGTTGCTACTTTTTGTTGGAATTAATACCATCAAATCTGACACTAGTCTGGTGCTTGCCAAGAAATGCATTACTTGTATCATTTGCGAGTTGAGATAAGAACTTGTCCAATTATTCATGGGTTATGCCTAATACTCTGTGTTTGGCTGTTGAGTGTATATTTTCTAGTAGTAGATTTCTTTCATCAACTTTTGTGGTTAGATTTCTAAGTAACAAATTTTAGCTGCAAATACAGGGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTAT-TAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAGGCAAGTTTCAGCTGCTATTTATTTATTGACCAGCATTGTCTTGTATCAGAGACAACTAACTAAAAAACTATCTAATAAAGCAACTGTATATGGAGTGCTTGCTATATTTGTTGAAGATTTTTTTTTTGATGATGTGTGGAATGCTTATATTTGTATAAAAGCAAAACGTTGACAAAGATTGATGATGTGGGACATTTTTGTTGGAAGTTCTTAGTAATTCTTCATCAGCTACTTATTGTGGTCTAATTGATAGATGTTGATTAATTGCACTCCTCTCAGAAAAGGTCCTTCTATAGTTTTGTTTCTGGTCCTTTAATCTACTTATCATGTTTAATAGTAGTTACACACCTTTCAAAATTAGCACACCCTTGAATGCATTAATGGAATTAGTGAGCCTATTGTGCTTCTGGTGCCAAAGTTCTTACTGCAGTACCGCACTTAAATATTTTGTATGAAGTAGAAAGAGTTAAATATGACATAATGGAAACTGTTGCTTGAGTTGTCTGGACTGGTTATATTTGAGTTCCAGTTATCCTATCCTTAGTTGTCAAAATACATTGACTTAGATGTCATGGTCCCCCCAAAAAGGAACAATCTGTCATATGGTGATTCGTCAGTCAAAAATGTTTCAAGTGATACTATGAAGTATTCTGTACGGATGTAATTATACAACACAAATGAGCAGCTACTCTACAATTTATTTTGCTTGTAGTTAAGTTTTGACTGCTGTTGTGATTTGAATGCATGGATTGCAGATAGTTTCTTTCCTTCAGCAGAATGCA</genome_strand>
        <mrna_strand>ACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG...............................................................................................GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG...................................................................................................................................................................................................................................................................................................................................................GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG............................................................................................................................................................................................................................................................................................................................................................GGTGGAATACCAACTTCCAAATCTCATTGTTGGTGCTATTTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTACTTTCCTTCAGCAGAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372240" ref_strand="+" ref_description="SGN-E372240 [TUS-30-H5]">
      <seq>aacaatttacctagcaagtgctcttctatttcccctcctaagtgaatgaaacagctcctgtttaaaattcaagatggtaaaacttgtaaagagttacctgcgattatccctcaagatcacaaacataacaataggatttatgggcattgcaatgctcatctatggtgtatggatgatcagagtttggcagcgcgatgctgccaactcaccctcatcccctgattatgctcaatttccttggtttatccatgcatttcttggtgttggcactgctttgtgtgcaatcactttccttggtcatgttgcagcaagcactgccaattcctattgcctctcattttatatgttcttcatatttgtgcttcttttagcagagattgcaattacagctgatgttttcttgaactctgattgggagaaggatttgcctgaagatccatcaggaaggtttgatgatttcaaggattttgtggactcgaatagcgatgtctgccaatggattaccctgctttgtgttctaacacagggatgttgtatcttattggctacaattctaagaactcttgggcaagttaaggaaaatagtcatgagtatgaaggtgaatatgcagaaccatcagctccacttcttcgccctccgcaactgcctccaaatcctctgtatccatatgttattggtgaaccagttcatattgaaccacattctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="11619" stop="13571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11919" g_stop="12158" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12159" i_stop="12250" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12251" g_stop="12350" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="340" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12351" i_stop="12466" i_length="116">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12467" g_stop="12547" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="421" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12548" i_stop="12892" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12893" g_stop="12997" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="526" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12998" i_stop="13088" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.354" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13089" g_stop="13271" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="709" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E372240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11919" e_stop="12158"/>
          <exon e_start="12251" e_stop="12350"/>
          <exon e_start="12467" e_stop="12547"/>
          <exon e_start="12893" e_stop="12997"/>
          <exon e_start="13089" e_stop="13271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTGGTGAGTTCGGTTATCTAACTTTCTTTTTTATTTTACAAATACAGTATAATTTTCCAACGAAGCTAACACTCACAGTGGCGAAACAATGACAGGTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTTGTATCCTTTTTTCTTTATATTTCTCATATATAAAATAGTCTTTGAGTAAATTTATTTTTGGTCCTAAATGAAACTGCATTGAGAGAAACAAAAATGGACCTTAACTATACTTATAGTATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAGGTATGCATCTTACATCTAAGTTATCTTTTATCATATTGTTATATTCAAAGTTATCTCTCTGTATTCTATTGATCAAGACATCAACAAAACAACCTTGTGTTGTAAAAATGGGAAAAATATAATTGAAGAAGAAATGACTTTGAGGCGCGAAAGAATAGACTTTTCTTAAAGAGATATTGCTTCATGTTCTTTCACGAACAGATGTTTTTGTTCAATTTAAAACCTCTAATATGTTACAGACTATATAACAATACCACCAACACATGTACCGGATAACTCTCTGTCCTGCCAAAGCTTGGACAATTGCTTCTCTCCAATGTTCTCACTGTGTTTTACCTGAATCAGGATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAGGTAAGAAATAAAAGCAACCCCACCTCCAAGAACTTCACTATGTTTTACTTGGCTCAAATTAGTTACATGATTCTTAATGCATAATAAGCAGGGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTCTGCC</genome_strand>
        <mrna_strand>AACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTG............................................................................................GTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTT....................................................................................................................TATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAG.........................................................................................................................................................................................................................................................................................................................................................GATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAG...........................................................................................GGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285799" ref_strand="+" ref_description="SGN-E285799 [cLES-5-B17]">
      <seq>aacaatttacctagcaagtgctcttctatttcccctcctaagtgaatgaaacagctcctgcttaaaattcaagatggcaaaacttgtcaagagttacctgcgattatccctcaagatcacaaacataacaataggatttatgggcattgcaatgctcatctatggtgtatggatgatcagagtttggcagcgcgatgctgccaactcaccctcatcccctgattatgctcaatttccttggtttatccatgcatttcttggcgttggcactgctttgcgtgcaatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="11619" stop="12598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11919" g_stop="12158" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12159" i_stop="12250" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12251" g_stop="12298" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="288" r_length="48" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E285799" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11919" e_stop="12158"/>
          <exon e_start="12251" e_stop="12298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTGGTGAGTTCGGTTATCTAACTTTCTTTTTTATTTTACAAATACAGTATAATTTTCCAACGAAGCTAACACTCACAGTGGCGAAACAATGACAGGTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCAC</genome_strand>
        <mrna_strand>AACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGCTTAAAATTCAAGATGGCAAAACTTGTCAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTG............................................................................................GTTTATCCATGCATTTCTTGGCGTTGGCACTGCTTTGCGTGCAATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266308" ref_strand="+" ref_description="SGN-E266308 [cLEI-3-J14]">
      <seq>ctgtttaaaattcaagatggtaaaacttgtaaagagttacctgcgattatccctcaagatcacaaacataacaataggatttatgggcattgcaatgctcatctatggtgtatggatgatcagagtttggcagcgcgatgctgccaactcaccctcatcccctgattatgctcaatttccttggtttatccatgcatttcttggtgttggcactgctttgtgtgcaatcactttccttggtcatgttgcagcaagcactgccaattcctattgcctctcattttatatgttcttcatatttgtgcttcttttagcagagattgcaattacagctgatgttttcttgaactctgattgggagaaggatttgcctgaagatccatcaggaaggtttgatgatttcaaggattttgtggactcgaatagcgatgtctgccaatggattaccctgctttgtgttctaacacagggatgttgtatcttattggctacaattctaagaactcttgggcaagttaaggaaaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="11676" stop="13448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11976" g_stop="12158" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12159" i_stop="12250" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12251" g_stop="12350" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="283" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12351" i_stop="12466" i_length="116">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12467" g_stop="12547" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="364" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12548" i_stop="12892" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12893" g_stop="12997" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="469" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12998" i_stop="13088" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.354" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13089" g_stop="13148" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="529" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E266308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11976" e_stop="12158"/>
          <exon e_start="12251" e_stop="12350"/>
          <exon e_start="12467" e_stop="12547"/>
          <exon e_start="12893" e_stop="12997"/>
          <exon e_start="13089" e_stop="13148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTGGTGAGTTCGGTTATCTAACTTTCTTTTTTATTTTACAAATACAGTATAATTTTCCAACGAAGCTAACACTCACAGTGGCGAAACAATGACAGGTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTTGTATCCTTTTTTCTTTATATTTCTCATATATAAAATAGTCTTTGAGTAAATTTATTTTTGGTCCTAAATGAAACTGCATTGAGAGAAACAAAAATGGACCTTAACTATACTTATAGTATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAGGTATGCATCTTACATCTAAGTTATCTTTTATCATATTGTTATATTCAAAGTTATCTCTCTGTATTCTATTGATCAAGACATCAACAAAACAACCTTGTGTTGTAAAAATGGGAAAAATATAATTGAAGAAGAAATGACTTTGAGGCGCGAAAGAATAGACTTTTCTTAAAGAGATATTGCTTCATGTTCTTTCACGAACAGATGTTTTTGTTCAATTTAAAACCTCTAATATGTTACAGACTATATAACAATACCACCAACACATGTACCGGATAACTCTCTGTCCTGCCAAAGCTTGGACAATTGCTTCTCTCCAATGTTCTCACTGTGTTTTACCTGAATCAGGATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAGGTAAGAAATAAAAGCAACCCCACCTCCAAGAACTTCACTATGTTTTACTTGGCTCAAATTAGTTACATGATTCTTAATGCATAATAAGCAGGGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGT</genome_strand>
        <mrna_strand>CTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTG............................................................................................GTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTT....................................................................................................................TATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAG.........................................................................................................................................................................................................................................................................................................................................................GATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAG...........................................................................................GGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372239" ref_strand="+" ref_description="SGN-E372239 [TUS-30-H5](-)">
      <seq>aattacagctgatgttttcttgaactctgattgggagaaggatttgcctgaagatccatcaggaaggtttgatgatttcaaggattttgtggactcgaatagcgatgtctgccaatggattaccctgctttgtgttctaacacagggatgttgtattttattggctacaattttaagaacttttgggcaagttaaggaaaatagtcatgagtatgaaggtgaatatgcagaaccatcagctccactttttcgccctccgcaactgcctccaaatcctctgtatccatatgttattggtgaaccagttcatattgaaccacattttgcctacaagaatgtttgagttttggaagacaattggtttgatccctttgtaaaactatgaaatcttgaaacctctctttttggcttattatgttattgaagtttgcagaagttgaagtgaatgaagttatcctttatggaaaaatatgctatgtagcttttccaattgcttaagaatgagctttgttaatcagaaacagatgagaccattttatgtataattaagattgtgagttttgcaacttttatgtttttgagtggtatcatttttgtttattacaatgaacaatgatattacattgtttatgcatgttgaacttttttggactttttcatatattaaactctcctaatgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="12208" stop="13926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12508" g_stop="12547" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12548" i_stop="12892" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12893" g_stop="12997" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="145" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12998" i_stop="13088" i_length="91">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.354" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13089" g_stop="13625" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="682" r_length="537" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13626" i_stop="13712" i_length="87">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.619" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13713" g_stop="13723" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="693" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E372239" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12508" e_stop="12547"/>
          <exon e_start="12893" e_stop="12997"/>
          <exon e_start="13089" e_stop="13625"/>
          <exon e_start="13713" e_stop="13723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAGGTATGCATCTTACATCTAAGTTATCTTTTATCATATTGTTATATTCAAAGTTATCTCTCTGTATTCTATTGATCAAGACATCAACAAAACAACCTTGTGTTGTAAAAATGGGAAAAATATAATTGAAGAAGAAATGACTTTGAGGCGCGAAAGAATAGACTTTTCTTAAAGAGATATTGCTTCATGTTCTTTCACGAACAGATGTTTTTGTTCAATTTAAAACCTCTAATATGTTACAGACTATATAACAATACCACCAACACATGTACCGGATAACTCTCTGTCCTGCCAAAGCTTGGACAATTGCTTCTCTCCAATGTTCTCACTGTGTTTTACCTGAATCAGGATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAGGTAAGAAATAAAAGCAACCCCACCTCCAAGAACTTCACTATGTTTTACTTGGCTCAAATTAGTTACATGATTCTTAATGCATAATAAGCAGGGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTCTGCCTACAAGAATGTTTGAGTTTTGGAAGACAATTGGTTTGATCCCTTTGTAAAACTATGAAATCTTGAAACCTCTCTTTTTGGCTTATTATGTTATTGAAGTCTGCAGAAGTTGAAGTGAATGAAGTTATCCTTTATGGAAAAATATGCTATGTAGCTTCTCCAATTGCTTAAGAATGAGCTTTGTTAATCAGAAACAGATGAGACCATTTTATGTATAATTAAGATTGTGAGTTTTGCAACTTTTATGTTTTTGAGTGGTATCATTTTTGTTTATTACAATGAACAATGATATTACATTGTTTATGCATGTTGAACTTCTTTGGACTTCTTCATATATTAAACTCTCCTAATGAAAATCCTTTGCGAACATTTTCATTTTCTGAACCATTTCTTATCCTAAGTAAAAATTTAACAGCACTATCTTACTTCAAATGCTTTGCAGAAAAAGGGAAA</genome_strand>
        <mrna_strand>AATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAG.........................................................................................................................................................................................................................................................................................................................................................GATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAG...........................................................................................GGATGTTGTATTTTATTGGCTACAATTTTAAGAACTTTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTTTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTTTGCCTACAAGAATGTTTGAGTTTTGGAAGACAATTGGTTTGATCCCTTTGTAAAACTATGAAATCTTGAAACCTCTCTTTTTGGCTTATTATGTTATTGAAGTTTGCAGAAGTTGAAGTGAATGAAGTTATCCTTTATGGAAAAATATGCTATGTAGCTTTTCCAATTGCTTAAGAATGAGCTTTGTTAATCAGAAACAGATGAGACCATTTTATGTATAATTAAGATTGTGAGTTTTGCAACTTTTATGTTTTTGAGTGGTATCATTTTTGTTTATTACAATGAACAATGATATTACATTGTTTATGCATGTTGAACTTTTTTGGACTTTTTCATATATTAAACTCTCCTAATGAAA.......................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351758" ref_strand="+" ref_description="SGN-E351758 [cTOS-8-F2]">
      <seq>ccctttttgccgcgatagccttaaaagggttaactccagtgatctgtgggtatacatggacaacaaagacatcgtggacatgtcaatgataacaagggagaatctgaggcggctattcatgtttatagataagctacccttgatcgtgccagataatgtttttgatcactatgatactcatataaggtagatgatcaatgcttccattgggggattgaatcatactaaagataaagtaattggtctcgctagatttagaaatgcaggtggattactttatcacctttcctgatttagaagaacccgaccgagtcattgtggtgcaggggttgaagctaagttagataagattagccaaaaaaaaatggagctttttaattgcatctcctaatttgtacatgcctgtacagttccagttttacttcttgaaaacacaattgntggttggtttctgatcttcaagtatgccatgaataccagcatttgagctttctcaagtgcagagttgtatggttgctatttataagaatgtataatatatgatgtatttaggttccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="14590" stop="13432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14290" g_stop="13725" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E351758" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14290" e_stop="13725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGTTTCCAATCTGTAA</genome_strand>
        <mrna_strand>CCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGNTGGTTGGTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGGTTCCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353166" ref_strand="+" ref_description="SGN-E353166 [cTOS-14-O5]">
      <seq>atcgtgccagataatgtttttgatcactatgatactcatataaggtagatgatcaatgcttccattgggggattgaatcatactaaagataaagtaattggtctcgctagatttagaaatgcaggtggattactttatcacctttcctgatttagaagaacccgaccgagtcattgtggtgcaggggttgaagctaagttagataagattagccaaaaaaaaatggagctttttaattgcatctcctaatttgtacatgcctgtacagttccagttttacttcttgaaaacacaattgttgtttgttttctgatcttcaagtatgccatgaataccagcatttgagctttctcaagtgcagagttgtatggttgctatttataagaatgtataatatatgatgtatttagtttccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="14448" stop="13432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14148" g_stop="13733" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="431"/>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E353166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14148" e_stop="13733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGTTTCCA</genome_strand>
        <mrna_strand>ATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747414" ref_strand="+" ref_description="SGN-E747414 [GI|47104548]">
      <seq>gaaacagagtcatcaaaatttggggaaaattcttacaagagaatcgaatagattttgatttgaggaaaaaaaggggtggtgttgaagtggatttgtgatggtaaggagtgtttggttgtgagtaaaattcgttttttcttttttgggttttgggtggttggagtaaagagcgaaagagaaggaaaattgcaggtatgaatagaggaggaattggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatgaaaggaaagcaagcattagggagttctatgctgttatttatccctccttacttcaacttgaaagaggtgttacggattcagaagacaaaaagcaaaaagcagtttgccaggagagatacaggagaagagatgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaattgtccttcccaaatgcaatcacgccctgtgtttgaaatgctatcgtgaatggcgttcaaggtcacaatcctgccctttttgccgcgatagccttaaaagggttaactccagtgatctgtgggtatacatggacaacaaagacatcgtggacatgtcaatgataacaagggagaatctgaggcggctattcatgtttatagataagctacccttgatcgtgccagataatgtttttgatcactatgatactcatataaggtagatgatcaatgcttccattgggggattgaatcatactaaagataaagtaattggtctcgctagatttagaaatgcaggtggattactttatcacctttcctgatttagaagaacccgaccgagtcattgtggtgcaggggttgaagctaagttagataagattagccaaaaaaaaatggagctttttaattgcatctcctaatttgtacatgcctgtacagttccagttttacttcttgaaaacacaattgttgtttgttttctgatcttcaagtatgccatgaataccagcatttgagctttctcaagtgcagagttgtatggttgctatttataagaatgtataatatatgatgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18575" stop="13444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18275" g_stop="17984" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="443" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="510" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16248" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="745" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16247" i_stop="14312" i_length="1936">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14311" g_stop="13745" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="1312" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1313" polyA_stop="1327"/>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E747414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1312</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18275" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16248"/>
          <exon e_start="14311" e_stop="13745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGGTGGTCCCTCTATTAGGTAGTCTAGCTCTATTTATCAGGCCAGCTATTTAAAGACGTCTAGGGCAGGAACAAGTTAATAGCTAGGTCTGGGTTGCTAAAGGGTAGGTCAGTATTTACTTTCTTGTGTGCATGTTAGCCACATAACTTAATGATACAAAAGTCTTTTTAGTAAGCTGGACCGTTTGTACCTTAGTTTTTGAAATTCATTATAGAGATGACTTACTTAGGAAAATGGCTGCATCTGTATCTCCCCTTCCTTTTGTAGTTGGCAATTTAATAAACTGCGATAAATGCTTCAGATAGTGTCAAGTTTCCCTGTGTCACAGTATAGTTAAGCAGAACATGGTAAAAGGGAGCTACTTCAAGTGATATAGCTATATAGCTTAGGCTTGTCTGCTTACATTCTTCTTTATTTTTTTCGTGTCTTTTATGATGCAGTGGGCATGTGCAGGAGAAGTGCACTGTCCTAAATTGTTACTATTATTTCATTTTATTGAGTGAGTATTATCAGTGTTAAGCTCTATATAAACTAGCAGTCATCATCTGAACCCTCTGTATTTAGGAAACATGTTACAGCCAGAGCCCAGAGTGTTATTTTCCTGCTAATCAGTAACTCTGAATTGTCTGAGAAGCTGGAGTGCATCTCTGCTCTTTTTATCGCCATAGTACCGGGTTTCAGTGTCATCATTTGAACATACTGATCCGGGATGTTTTAGGAGAATTTCCCCCTGTACATGGGTGCATGGGGAACATCACTAATAAATAGTCAGATGAAAAATTGGTGAATTAATTGCGAAAAGGCAGACCTCCACCTCCTAACTAGCCTGCCAAGTTTTTTTGCGTGATTTTGTACAATATAGAGATCCTGCAGGTACATAGATTTGCCGCTATTCTGCAGATTGTAGGGGCTATTCACACAAACATTGCAGCTAGGACTAATTTCTTAGTCCATGTTAATATGCTTCGTCCATTTAACCGCATTTGGAGTTGACAATAATATTAGGTAAAGATATCTCTACAGTCCTAGGTTGCCCCATGGTCCTCTAAAGCACTAGAGGAGGCATAAAGTTGCTGCTGGATATAAGTTGCCTCTCCATTTGGGGTGAAGTAAATTTGGTCCTGCTATATCTTATTCAGCTAATGAAATGAAATGGGGTAGTACTATATTCTGGCGCCAAATTGATGGAATCGCGTCTTACAACCTTTAGCAGCCCTTGTGCACATAGCATCTTTCGTTAGCAGGGTACGGGGAATGCCACACTTCCAAGGGGTGTTATGTTGACAACCTATTAATGGACACATTAGTGGCTGCTTCCACGCCTCAAAGTGTGACCTATAGATCACATGGAGAGAACTTTACCGTTGTGTCTTACAACCTAATGGAAAATTATTAAGAGGGACGGAAGGGAAAAAGCACTGTGGTGCATTTTTGCATTCTGAGTATGTTCAATTGATTATAAGCTGTAGCAATCTCCTAAACAGGAAGTATTCGTTATTATCAAGTTCCTGTGGCAAGCTATATATGGAATTTAGTAGTACCATCTTCTCGTTAAGGGCCACTTTGGGGAGAATAGCAGCTCTTGGTGGTGGTCAAATACTTTCTTTTTTGGGTCAGTATTGCACTTGTTTCTACTAGGGCGTCATACTTTATTACTCTGCAAAATATGTATATTCAGCATTATGTCTCCTTTCTGTACAGCTAATTTTGCTCGTACAACTACTCACACTGAGAGTTATCTCATACAATGCATTGCAGGCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGT</genome_strand>
        <mrna_strand>GAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373707" ref_strand="+" ref_description="SGN-E373707 [TUS-33-K24](-)">
      <seq>atgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaattgtccttcccaaatgcaatcacgccctgtgtttgaaatgctatcgtgaatggcgttcaaggtcacaatcctgccctttttgccgcgatagccttaaaagggttaactccagtgatctgtgggtatacatggacaacaaagacatcgtggacatgtcaatgataacaagggagaatctgaggcggctattcatgtttatagataagctacccttgatcgtgccagataatgtttttgatcactatgatactcatataaggtagatgatcaatgcttccattgggggattgaatcatactaaagataaagtaattggtctcgctagatttagaaatgcaggtggattactttatcacctttcctgatttagaagaacccgaccgagtcattgtggtgcaggggttgaagctaagttagataagattagccaaaaaaaaatggagctttttaattgcatctcataatttgtacatgcctgtacagttccagttttacttcttgaaaacacaattgttgtttgttttctgatcttcaagtatgccatgaataccagcatttgagctttctcaagtgcagagttgtatggttgctatttataagaatgtataatatatgagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="16683" stop="13444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16383" g_stop="16248" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16247" i_stop="14312" i_length="1936">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14311" g_stop="13749" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="699" r_length="563" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E373707" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16383" e_stop="16248"/>
          <exon e_start="14311" e_stop="13749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGGTGGTCCCTCTATTAGGTAGTCTAGCTCTATTTATCAGGCCAGCTATTTAAAGACGTCTAGGGCAGGAACAAGTTAATAGCTAGGTCTGGGTTGCTAAAGGGTAGGTCAGTATTTACTTTCTTGTGTGCATGTTAGCCACATAACTTAATGATACAAAAGTCTTTTTAGTAAGCTGGACCGTTTGTACCTTAGTTTTTGAAATTCATTATAGAGATGACTTACTTAGGAAAATGGCTGCATCTGTATCTCCCCTTCCTTTTGTAGTTGGCAATTTAATAAACTGCGATAAATGCTTCAGATAGTGTCAAGTTTCCCTGTGTCACAGTATAGTTAAGCAGAACATGGTAAAAGGGAGCTACTTCAAGTGATATAGCTATATAGCTTAGGCTTGTCTGCTTACATTCTTCTTTATTTTTTTCGTGTCTTTTATGATGCAGTGGGCATGTGCAGGAGAAGTGCACTGTCCTAAATTGTTACTATTATTTCATTTTATTGAGTGAGTATTATCAGTGTTAAGCTCTATATAAACTAGCAGTCATCATCTGAACCCTCTGTATTTAGGAAACATGTTACAGCCAGAGCCCAGAGTGTTATTTTCCTGCTAATCAGTAACTCTGAATTGTCTGAGAAGCTGGAGTGCATCTCTGCTCTTTTTATCGCCATAGTACCGGGTTTCAGTGTCATCATTTGAACATACTGATCCGGGATGTTTTAGGAGAATTTCCCCCTGTACATGGGTGCATGGGGAACATCACTAATAAATAGTCAGATGAAAAATTGGTGAATTAATTGCGAAAAGGCAGACCTCCACCTCCTAACTAGCCTGCCAAGTTTTTTTGCGTGATTTTGTACAATATAGAGATCCTGCAGGTACATAGATTTGCCGCTATTCTGCAGATTGTAGGGGCTATTCACACAAACATTGCAGCTAGGACTAATTTCTTAGTCCATGTTAATATGCTTCGTCCATTTAACCGCATTTGGAGTTGACAATAATATTAGGTAAAGATATCTCTACAGTCCTAGGTTGCCCCATGGTCCTCTAAAGCACTAGAGGAGGCATAAAGTTGCTGCTGGATATAAGTTGCCTCTCCATTTGGGGTGAAGTAAATTTGGTCCTGCTATATCTTATTCAGCTAATGAAATGAAATGGGGTAGTACTATATTCTGGCGCCAAATTGATGGAATCGCGTCTTACAACCTTTAGCAGCCCTTGTGCACATAGCATCTTTCGTTAGCAGGGTACGGGGAATGCCACACTTCCAAGGGGTGTTATGTTGACAACCTATTAATGGACACATTAGTGGCTGCTTCCACGCCTCAAAGTGTGACCTATAGATCACATGGAGAGAACTTTACCGTTGTGTCTTACAACCTAATGGAAAATTATTAAGAGGGACGGAAGGGAAAAAGCACTGTGGTGCATTTTTGCATTCTGAGTATGTTCAATTGATTATAAGCTGTAGCAATCTCCTAAACAGGAAGTATTCGTTATTATCAAGTTCCTGTGGCAAGCTATATATGGAATTTAGTAGTACCATCTTCTCGTTAAGGGCCACTTTGGGGAGAATAGCAGCTCTTGGTGGTGGTCAAATACTTTCTTTTTTGGGTCAGTATTGCACTTGTTTCTACTAGGGCGTCATACTTTATTACTCTGCAAAATATGTATATTCAGCATTATGTCTCCTTTCTGTACAGCTAATTTTGCTCGTACAACTACTCACACTGAGAGTTATCTCATACAATGCATTGCAGGCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATG</genome_strand>
        <mrna_strand>ATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCATAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374281" ref_strand="+" ref_description="SGN-E374281 [TUS-33-F20](-)">
      <seq>tgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaattgtccttcccaaatgcaatcacgccctgtgtttgaaatgctatcgtgaatggcgttcaaggtcacaatcctgccctttttgccgcgatagccttaaaagggttaactccagtgatctgtgggtatacatggacaacaaagacatcgtggacatgtcaatgataacaagggagaatctgaggcggctattcatgtttatagataagctacccttgatcgtgccagataatgtttttgatcactatgatactcatataaggtagatgatcaatgcttccattgggggattgaatcatactaaagataaagtaattggtctcgctagatttagaaatgcaggtggattactttatcacctttcctgatttagaagaacccgaccgagtcattgtggtgcaggggttgaagctaagttagataagattagccaaaaaaaaatggagctttttaattgcatctcctaatttgtacatgcctgtacagttccagttttacttcttgaaaacacaattgttgtttgttttctgatcttcaagtatgccatgaataccagcatttgagctttctcaagtgcagagttgtatggttgctatttataagaatgtataatatatgagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="16682" stop="13444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16382" g_stop="16248" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16247" i_stop="14312" i_length="1936">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14311" g_stop="13749" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="698" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E374281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16382" e_stop="16248"/>
          <exon e_start="14311" e_stop="13749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGGTGGTCCCTCTATTAGGTAGTCTAGCTCTATTTATCAGGCCAGCTATTTAAAGACGTCTAGGGCAGGAACAAGTTAATAGCTAGGTCTGGGTTGCTAAAGGGTAGGTCAGTATTTACTTTCTTGTGTGCATGTTAGCCACATAACTTAATGATACAAAAGTCTTTTTAGTAAGCTGGACCGTTTGTACCTTAGTTTTTGAAATTCATTATAGAGATGACTTACTTAGGAAAATGGCTGCATCTGTATCTCCCCTTCCTTTTGTAGTTGGCAATTTAATAAACTGCGATAAATGCTTCAGATAGTGTCAAGTTTCCCTGTGTCACAGTATAGTTAAGCAGAACATGGTAAAAGGGAGCTACTTCAAGTGATATAGCTATATAGCTTAGGCTTGTCTGCTTACATTCTTCTTTATTTTTTTCGTGTCTTTTATGATGCAGTGGGCATGTGCAGGAGAAGTGCACTGTCCTAAATTGTTACTATTATTTCATTTTATTGAGTGAGTATTATCAGTGTTAAGCTCTATATAAACTAGCAGTCATCATCTGAACCCTCTGTATTTAGGAAACATGTTACAGCCAGAGCCCAGAGTGTTATTTTCCTGCTAATCAGTAACTCTGAATTGTCTGAGAAGCTGGAGTGCATCTCTGCTCTTTTTATCGCCATAGTACCGGGTTTCAGTGTCATCATTTGAACATACTGATCCGGGATGTTTTAGGAGAATTTCCCCCTGTACATGGGTGCATGGGGAACATCACTAATAAATAGTCAGATGAAAAATTGGTGAATTAATTGCGAAAAGGCAGACCTCCACCTCCTAACTAGCCTGCCAAGTTTTTTTGCGTGATTTTGTACAATATAGAGATCCTGCAGGTACATAGATTTGCCGCTATTCTGCAGATTGTAGGGGCTATTCACACAAACATTGCAGCTAGGACTAATTTCTTAGTCCATGTTAATATGCTTCGTCCATTTAACCGCATTTGGAGTTGACAATAATATTAGGTAAAGATATCTCTACAGTCCTAGGTTGCCCCATGGTCCTCTAAAGCACTAGAGGAGGCATAAAGTTGCTGCTGGATATAAGTTGCCTCTCCATTTGGGGTGAAGTAAATTTGGTCCTGCTATATCTTATTCAGCTAATGAAATGAAATGGGGTAGTACTATATTCTGGCGCCAAATTGATGGAATCGCGTCTTACAACCTTTAGCAGCCCTTGTGCACATAGCATCTTTCGTTAGCAGGGTACGGGGAATGCCACACTTCCAAGGGGTGTTATGTTGACAACCTATTAATGGACACATTAGTGGCTGCTTCCACGCCTCAAAGTGTGACCTATAGATCACATGGAGAGAACTTTACCGTTGTGTCTTACAACCTAATGGAAAATTATTAAGAGGGACGGAAGGGAAAAAGCACTGTGGTGCATTTTTGCATTCTGAGTATGTTCAATTGATTATAAGCTGTAGCAATCTCCTAAACAGGAAGTATTCGTTATTATCAAGTTCCTGTGGCAAGCTATATATGGAATTTAGTAGTACCATCTTCTCGTTAAGGGCCACTTTGGGGAGAATAGCAGCTCTTGGTGGTGGTCAAATACTTTCTTTTTTGGGTCAGTATTGCACTTGTTTCTACTAGGGCGTCATACTTTATTACTCTGCAAAATATGTATATTCAGCATTATGTCTCCTTTCTGTACAGCTAATTTTGCTCGTACAACTACTCACACTGAGAGTTATCTCATACAATGCATTGCAGGCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATG</genome_strand>
        <mrna_strand>TGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707048" ref_strand="+" ref_description="SGN-E707048 [FA31DF09]">
      <seq>agggagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatgaaaggaaagcaagcattagggagttctatgctgttatttatccctccttacttcaacttgaaagaggtgttacggattcagaagacaaaaagcaaaaagcagtttgccaggagagatacaggagaagagatgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaattgtccttcccaaatgcaatcacgccctgtgtttgaaatgctatcgtgaatggcgttcaaggtcacaatcctgccctttttgccgcgatagccttaaaagggttaactccagtgatctgtgggtatacatggacaacaaagacatcgtggacatgtcaatgataacaagggagaatctgaggcggctattcatgtttatagataagctacccttgatcgtgccagataatgtttttgatcactatgatactcatataaggtagatgatcaatgcttccattgggggattgaatcatactaaagataaagtaattggtctcgctagatttagaaatgcaggtggattactttatcacctttcctgatttanaagaacccgaccgagtcattgtggtgcanggggtgaagctaagttagataagattagccaaaaaaaaaatggagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="17186" stop="13617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16889" g_stop="16753" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="204" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16482" g_stop="16248" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="439" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16247" i_stop="14312" i_length="1936">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14311" g_stop="13917" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="835" r_length="396" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E707048" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16889" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16248"/>
          <exon e_start="14311" e_stop="13917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGGTGGTCCCTCTATTAGGTAGTCTAGCTCTATTTATCAGGCCAGCTATTTAAAGACGTCTAGGGCAGGAACAAGTTAATAGCTAGGTCTGGGTTGCTAAAGGGTAGGTCAGTATTTACTTTCTTGTGTGCATGTTAGCCACATAACTTAATGATACAAAAGTCTTTTTAGTAAGCTGGACCGTTTGTACCTTAGTTTTTGAAATTCATTATAGAGATGACTTACTTAGGAAAATGGCTGCATCTGTATCTCCCCTTCCTTTTGTAGTTGGCAATTTAATAAACTGCGATAAATGCTTCAGATAGTGTCAAGTTTCCCTGTGTCACAGTATAGTTAAGCAGAACATGGTAAAAGGGAGCTACTTCAAGTGATATAGCTATATAGCTTAGGCTTGTCTGCTTACATTCTTCTTTATTTTTTTCGTGTCTTTTATGATGCAGTGGGCATGTGCAGGAGAAGTGCACTGTCCTAAATTGTTACTATTATTTCATTTTATTGAGTGAGTATTATCAGTGTTAAGCTCTATATAAACTAGCAGTCATCATCTGAACCCTCTGTATTTAGGAAACATGTTACAGCCAGAGCCCAGAGTGTTATTTTCCTGCTAATCAGTAACTCTGAATTGTCTGAGAAGCTGGAGTGCATCTCTGCTCTTTTTATCGCCATAGTACCGGGTTTCAGTGTCATCATTTGAACATACTGATCCGGGATGTTTTAGGAGAATTTCCCCCTGTACATGGGTGCATGGGGAACATCACTAATAAATAGTCAGATGAAAAATTGGTGAATTAATTGCGAAAAGGCAGACCTCCACCTCCTAACTAGCCTGCCAAGTTTTTTTGCGTGATTTTGTACAATATAGAGATCCTGCAGGTACATAGATTTGCCGCTATTCTGCAGATTGTAGGGGCTATTCACACAAACATTGCAGCTAGGACTAATTTCTTAGTCCATGTTAATATGCTTCGTCCATTTAACCGCATTTGGAGTTGACAATAATATTAGGTAAAGATATCTCTACAGTCCTAGGTTGCCCCATGGTCCTCTAAAGCACTAGAGGAGGCATAAAGTTGCTGCTGGATATAAGTTGCCTCTCCATTTGGGGTGAAGTAAATTTGGTCCTGCTATATCTTATTCAGCTAATGAAATGAAATGGGGTAGTACTATATTCTGGCGCCAAATTGATGGAATCGCGTCTTACAACCTTTAGCAGCCCTTGTGCACATAGCATCTTTCGTTAGCAGGGTACGGGGAATGCCACACTTCCAAGGGGTGTTATGTTGACAACCTATTAATGGACACATTAGTGGCTGCTTCCACGCCTCAAAGTGTGACCTATAGATCACATGGAGAGAACTTTACCGTTGTGTCTTACAACCTAATGGAAAATTATTAAGAGGGACGGAAGGGAAAAAGCACTGTGGTGCATTTTTGCATTCTGAGTATGTTCAATTGATTATAAGCTGTAGCAATCTCCTAAACAGGAAGTATTCGTTATTATCAAGTTCCTGTGGCAAGCTATATATGGAATTTAGTAGTACCATCTTCTCGTTAAGGGCCACTTTGGGGAGAATAGCAGCTCTTGGTGGTGGTCAAATACTTTCTTTTTTGGGTCAGTATTGCACTTGTTTCTACTAGGGCGTCATACTTTATTACTCTGCAAAATATGTATATTCAGCATTATGTCTCCTTTCTGTACAGCTAATTTTGCTCGTACAACTACTCACACTGAGAGTTATCTCATACAATGCATTGCAGGCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCC-AAAAAAAAATGGAGCTTT</genome_strand>
        <mrna_strand>AGGGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTANAAGAACCCGACCGAGTCATTGTGGTGCANGGGGTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAAATGGAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698236" ref_strand="+" ref_description="SGN-E698236 [FA05CG06]">
      <seq>aaattgcaggtatgaatagaggaggaattggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatgaaaggaaagcaagcattagggagttctatgctgttatttatccctccttacttcaacttgaaagaggtgttacggattcagaagacaaaaagcaaaaagcagtttgccaggagagatacaggagaagagatgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaattgtccttcccaaatgcaatcacgccctgtgtttgaaatgctatcgtgaatggcgttcaaggtcacaatcctgccctttttgccgcgatagccttaaaagggttaactccagtgatctgtgggtatacatggacaacaaagacatcgtggacatgtcaatgataacaagggagaatctgaggcggctattcatgtttatagataagctacccttgatcgtgccagataatgtttttgatcactatgatactcatataaggtagatgatcaatgcttccattgggggattgaatcatactaaagataaagtaattggtctcgctaaatttagaaatgcaggtggattactttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18392" stop="13711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18092" g_stop="17984" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="260" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="327" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16248" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="562" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16247" i_stop="14312" i_length="1936">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14311" g_stop="14011" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="863" r_length="301" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E698236" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18092" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16248"/>
          <exon e_start="14311" e_stop="14011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGGTGGTCCCTCTATTAGGTAGTCTAGCTCTATTTATCAGGCCAGCTATTTAAAGACGTCTAGGGCAGGAACAAGTTAATAGCTAGGTCTGGGTTGCTAAAGGGTAGGTCAGTATTTACTTTCTTGTGTGCATGTTAGCCACATAACTTAATGATACAAAAGTCTTTTTAGTAAGCTGGACCGTTTGTACCTTAGTTTTTGAAATTCATTATAGAGATGACTTACTTAGGAAAATGGCTGCATCTGTATCTCCCCTTCCTTTTGTAGTTGGCAATTTAATAAACTGCGATAAATGCTTCAGATAGTGTCAAGTTTCCCTGTGTCACAGTATAGTTAAGCAGAACATGGTAAAAGGGAGCTACTTCAAGTGATATAGCTATATAGCTTAGGCTTGTCTGCTTACATTCTTCTTTATTTTTTTCGTGTCTTTTATGATGCAGTGGGCATGTGCAGGAGAAGTGCACTGTCCTAAATTGTTACTATTATTTCATTTTATTGAGTGAGTATTATCAGTGTTAAGCTCTATATAAACTAGCAGTCATCATCTGAACCCTCTGTATTTAGGAAACATGTTACAGCCAGAGCCCAGAGTGTTATTTTCCTGCTAATCAGTAACTCTGAATTGTCTGAGAAGCTGGAGTGCATCTCTGCTCTTTTTATCGCCATAGTACCGGGTTTCAGTGTCATCATTTGAACATACTGATCCGGGATGTTTTAGGAGAATTTCCCCCTGTACATGGGTGCATGGGGAACATCACTAATAAATAGTCAGATGAAAAATTGGTGAATTAATTGCGAAAAGGCAGACCTCCACCTCCTAACTAGCCTGCCAAGTTTTTTTGCGTGATTTTGTACAATATAGAGATCCTGCAGGTACATAGATTTGCCGCTATTCTGCAGATTGTAGGGGCTATTCACACAAACATTGCAGCTAGGACTAATTTCTTAGTCCATGTTAATATGCTTCGTCCATTTAACCGCATTTGGAGTTGACAATAATATTAGGTAAAGATATCTCTACAGTCCTAGGTTGCCCCATGGTCCTCTAAAGCACTAGAGGAGGCATAAAGTTGCTGCTGGATATAAGTTGCCTCTCCATTTGGGGTGAAGTAAATTTGGTCCTGCTATATCTTATTCAGCTAATGAAATGAAATGGGGTAGTACTATATTCTGGCGCCAAATTGATGGAATCGCGTCTTACAACCTTTAGCAGCCCTTGTGCACATAGCATCTTTCGTTAGCAGGGTACGGGGAATGCCACACTTCCAAGGGGTGTTATGTTGACAACCTATTAATGGACACATTAGTGGCTGCTTCCACGCCTCAAAGTGTGACCTATAGATCACATGGAGAGAACTTTACCGTTGTGTCTTACAACCTAATGGAAAATTATTAAGAGGGACGGAAGGGAAAAAGCACTGTGGTGCATTTTTGCATTCTGAGTATGTTCAATTGATTATAAGCTGTAGCAATCTCCTAAACAGGAAGTATTCGTTATTATCAAGTTCCTGTGGCAAGCTATATATGGAATTTAGTAGTACCATCTTCTCGTTAAGGGCCACTTTGGGGAGAATAGCAGCTCTTGGTGGTGGTCAAATACTTTCTTTTTTGGGTCAGTATTGCACTTGTTTCTACTAGGGCGTCATACTTTATTACTCTGCAAAATATGTATATTCAGCATTATGTCTCCTTTCTGTACAGCTAATTTTGCTCGTACAACTACTCACACTGAGAGTTATCTCATACAATGCATTGCAGGCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTAT</genome_strand>
        <mrna_strand>AAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAAATTTAGAAATGCAGGTGGATTACTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707838" ref_strand="+" ref_description="SGN-E707838 [FA34AD12]">
      <seq>cgtatgtaaaagaagctgtgaaaaagaaagaagaaacagagtcatcaaaatttggggaaaattcttacaagagaatcgaatagattttgatttgaggaaaaaaaggggtggtgttgaagtggatttgtgatggtaaggagtgtttggttgtgagtaaaattcgttttttcttttttgggttttgggtggttggagtaaagagcgaaagagaaggaaaattgcaggtatgaatagaggaggaattggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatgaaaggaaagcaagcattagggagttctatgctgttatttatccctccttacttcaacttgaaagaggtgttacggattcagaagacaaaaagcaaaaagcagtttgccaggagagatacaggagaagagatgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaattgtccttcccaaatgcaatcacgccctgtgtttgaaatgctatcgtgaatggcgttcaaagtcacaatcctgccctttttgccgcgatagccttaaaagggttaactccagtgatctgtgggtatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18602" stop="13936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18308" g_stop="17984" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="475" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="542" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16248" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="777" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16247" i_stop="14312" i_length="1936">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.764" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14311" g_stop="14236" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="853" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E707838" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18308" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16248"/>
          <exon e_start="14311" e_stop="14236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACAGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGGTGGTCCCTCTATTAGGTAGTCTAGCTCTATTTATCAGGCCAGCTATTTAAAGACGTCTAGGGCAGGAACAAGTTAATAGCTAGGTCTGGGTTGCTAAAGGGTAGGTCAGTATTTACTTTCTTGTGTGCATGTTAGCCACATAACTTAATGATACAAAAGTCTTTTTAGTAAGCTGGACCGTTTGTACCTTAGTTTTTGAAATTCATTATAGAGATGACTTACTTAGGAAAATGGCTGCATCTGTATCTCCCCTTCCTTTTGTAGTTGGCAATTTAATAAACTGCGATAAATGCTTCAGATAGTGTCAAGTTTCCCTGTGTCACAGTATAGTTAAGCAGAACATGGTAAAAGGGAGCTACTTCAAGTGATATAGCTATATAGCTTAGGCTTGTCTGCTTACATTCTTCTTTATTTTTTTCGTGTCTTTTATGATGCAGTGGGCATGTGCAGGAGAAGTGCACTGTCCTAAATTGTTACTATTATTTCATTTTATTGAGTGAGTATTATCAGTGTTAAGCTCTATATAAACTAGCAGTCATCATCTGAACCCTCTGTATTTAGGAAACATGTTACAGCCAGAGCCCAGAGTGTTATTTTCCTGCTAATCAGTAACTCTGAATTGTCTGAGAAGCTGGAGTGCATCTCTGCTCTTTTTATCGCCATAGTACCGGGTTTCAGTGTCATCATTTGAACATACTGATCCGGGATGTTTTAGGAGAATTTCCCCCTGTACATGGGTGCATGGGGAACATCACTAATAAATAGTCAGATGAAAAATTGGTGAATTAATTGCGAAAAGGCAGACCTCCACCTCCTAACTAGCCTGCCAAGTTTTTTTGCGTGATTTTGTACAATATAGAGATCCTGCAGGTACATAGATTTGCCGCTATTCTGCAGATTGTAGGGGCTATTCACACAAACATTGCAGCTAGGACTAATTTCTTAGTCCATGTTAATATGCTTCGTCCATTTAACCGCATTTGGAGTTGACAATAATATTAGGTAAAGATATCTCTACAGTCCTAGGTTGCCCCATGGTCCTCTAAAGCACTAGAGGAGGCATAAAGTTGCTGCTGGATATAAGTTGCCTCTCCATTTGGGGTGAAGTAAATTTGGTCCTGCTATATCTTATTCAGCTAATGAAATGAAATGGGGTAGTACTATATTCTGGCGCCAAATTGATGGAATCGCGTCTTACAACCTTTAGCAGCCCTTGTGCACATAGCATCTTTCGTTAGCAGGGTACGGGGAATGCCACACTTCCAAGGGGTGTTATGTTGACAACCTATTAATGGACACATTAGTGGCTGCTTCCACGCCTCAAAGTGTGACCTATAGATCACATGGAGAGAACTTTACCGTTGTGTCTTACAACCTAATGGAAAATTATTAAGAGGGACGGAAGGGAAAAAGCACTGTGGTGCATTTTTGCATTCTGAGTATGTTCAATTGATTATAAGCTGTAGCAATCTCCTAAACAGGAAGTATTCGTTATTATCAAGTTCCTGTGGCAAGCTATATATGGAATTTAGTAGTACCATCTTCTCGTTAAGGGCCACTTTGGGGAGAATAGCAGCTCTTGGTGGTGGTCAAATACTTTCTTTTTTGGGTCAGTATTGCACTTGTTTCTACTAGGGCGTCATACTTTATTACTCTGCAAAATATGTATATTCAGCATTATGTCTCCTTTCTGTACAGCTAATTTTGCTCGTACAACTACTCACACTGAGAGTTATCTCATACAATGCATTGCAGGCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATAC</genome_strand>
        <mrna_strand>CGTA-TGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTCAAAGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736848" ref_strand="+" ref_description="SGN-E736848 [LC07CB10]">
      <seq>attctgtacagtaaaagaagctgtgaaaaagaaagaagaaacagagtcatcaaaatttggggaaaattcttacaagagaatcgaatagattttgatttgaggaaaaaaaggggtggtgttgaagtggatttgtgatggtaaggagtgtttggttgtgagtaaaattcgttttttcttttttgggttttgggtggttggagtaaagagcgaaagagaaggaaaattgcaggtatgaatagaggaggaattggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcaagcattagggagttctatgctgttatttatccctccttacttcaacttgaaagaggtgttacggattcagaagacaaaaagcaaaaagcagtttgccaggagagatacaggagaagagatgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaattgtccttcccaaatgcaatcacgccctgtgtttgaaatgctatcgtgaatggtatgtttaattttgcagtttgtctgagatagaagatgtgtgttaagtttaactactatattcagatctctatcatcccacgccaactctacatttcctttgcactctttctaacccccttcatacactttgatgttcacagaacagctgtcgagtgcttcctggggtgaggttctgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18612" stop="15767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18312" g_stop="17984" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16839" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="394" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16838" i_stop="16605" i_length="234">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16604" g_stop="16584" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="415" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16067" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="831" r_length="416" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E736848" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18312" e_stop="17984"/>
          <exon e_start="16903" e_stop="16839"/>
          <exon e_start="16604" e_stop="16584"/>
          <exon e_start="16482" e_stop="16067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGTACAGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGG</genome_strand>
        <mrna_strand>ATTCTGTACAGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAG..........................................................................................................................................................................................................................................CAAGCATTAGGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTTGATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGGGTGAGGTTCTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705875" ref_strand="+" ref_description="SGN-E705875 [FA28BE11]">
      <seq>aaaagaagctgtgaaaaagaaagaagaaacagagtcatcaaaatttggggaaaattcttacaagagaatcgaatagattttgatttgaggaaaaaaaggggtggtgttgaagtggatttgtgatggtaaggagtgtttggttgtgagtaaaattcgttttttcttttttgggttttgggtggttggagtaaagagcgaaagagaaggaaaattgcaggtatgaatagaggaggaattggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatgaaaggaaagcaagcattagggagttctatgctgttatttatccctccttacttcaacttgaaagaggtgttacggattcagaagacaaaaagcaaaaagcagtttgccaggagagatacaggagaagagatgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaattgtcccttccccaatgcaatcacgccctgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18600" stop="15967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18300" g_stop="17984" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="468" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="535" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16267" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="752" r_length="217" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E705875" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18300" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGT-CCTTCCCAAATGCAATCACGCCCTGTGTT</genome_strand>
        <mrna_strand>AAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCCTTCCCCAATGCAATCACGCCCTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241595" ref_strand="+" ref_description="SGN-E241595 [cLED-36-I7]">
      <seq>taaaattcgttttttcttttttgggttttgggtggttggagtaaagagcgaaagagaaggaaaattgcaggtatgaatagaggaggaattggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatgaaaggaaagcaagcattagggagttctatgctgttatttatccctccttacttcaacttgaaagaggtgttacggattcagaagacaaaaagcaaaaagcagtttgccaggagagatacaggagaagagatgatgaggattacagacaatcttctgactctgacattgaaagggaagaggaatgtggaatctgcatggaaatgaacagcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18453" stop="16000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18153" g_stop="17984" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="321" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="388" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16300" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="571" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E241595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18153" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAA</genome_strand>
        <mrna_strand>TAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283800" ref_strand="+" ref_description="SGN-E283800 [cLES-1-F17]">
      <seq>ggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatgaaaggaaagcaagcattagggagttctatgctgttatttatccctccttacttcaacttgaaagaggtgttacggattcagaagacaaaaagcaaaaagcagtttgccaggagagatacaggagaagagatgatgaggattacagacaatcttctgactctgacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18363" stop="16044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18063" g_stop="17984" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="231" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="298" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16344" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="437" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E283800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18063" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGA</genome_strand>
        <mrna_strand>GGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E281961" ref_strand="+" ref_description="SGN-E281961 [cLES-2-A4]">
      <seq>ggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatgaaaggaaagcaagcattagggagttctatgctgatatttatccctccttacttcaacttgaaagaggtgttacggattcagaagaacaaaaagcaaaaagcagtttgccaggagagatacaggagaagagatgatgaggattacagacaatcttctgactctgacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18363" stop="16045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18063" g_stop="17984" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="231" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="298" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16345" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="437" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E281961" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18063" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAG-ACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTG</genome_strand>
        <mrna_strand>GGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG.....................................................................................................CTGATATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGAACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373708" ref_strand="+" ref_description="SGN-E373708 [TUS-33-K24]">
      <seq>aaacagagtcatcaaaatttggggaaaattcttacaagagaatcgaatagattttgatttgaggaaaaaaaggggtggtgttgaagtggatttgtgatggtaaggagtgtttggttgtgagtaaaattcgttttttcttttttgggttttgggtggttggagtaaagagcgaaagagaaggaaaattgcaggtatgaatagaggaggaattgtaattggagggccaatgcgaaagtcttttaaggactctcttatagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccattggactgattgccaccttgctggtgcacttggattgatgagacttcttatttactaggtttatgttgatggcaccacaaccatgtctgttcatgacaggaaagcgagcattacggagttctatgctgttatttatccctccttactttaacttgaaagaggtgttacggattcataagacaaaaagcaaaaagcattatgccaggagagatacaggagaagagatgatgaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18574" stop="16073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18274" g_stop="17984" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="442" r_length="151" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="509" r_length="67" r_score="0.940"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.834" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16373" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="619" r_length="110" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E373708" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18274" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGAT</genome_strand>
        <mrna_strand>AAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGTAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTATAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCATTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGATGAGACTTCTTATTTACTAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCTGTTCATGACAGGAAAGCGAGCATTACGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTTAACTTGAAAGAGGTGTTACGGATTCATAAGACAAAAAGCAAAAAGCATTATGCCAGGAGAGATACAGGAGAAGAGATGATGAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374282" ref_strand="+" ref_description="SGN-E374282 [TUS-33-F20]">
      <seq>aaacagagtcatcaaaatttggggaaaattcttacaagagaatcgaatagattttgatttgaggaaaaaaaggggtggtgttgaagtggatttgtgatggtaaggagtgtttggttgtgagtaaaattcgttttttcttttttgggttttgggtggttggagtaaagagcgaaagagaaggaaaattgcaggtatgaatagaggaggaattggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatgaaaggaaagcaagcattagggagttctatgctgttatttatccctccttacttcaacttgaaagatgtgttacggattcagaagacaaaaagcaaaaagcagtttgccaggagagatacacgagaagagatgatgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18574" stop="16075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18274" g_stop="17984" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="442" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="509" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16375" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="617" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E374282" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18274" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGG</genome_strand>
        <mrna_strand>AAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGATGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACACGAGAAGAGATGATGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267962" ref_strand="+" ref_description="SGN-E267962 [cLEI-15-C3]">
      <seq>agtcatcaaaatttggggaaaattcttacaagagaatcgaatagattttgatttgaggaaaaaaaggggtggtgttgaagtggatttgtgatggtaaggagtgtttggttgtgagtaaaattcgttttttcttttttgggttttgggtggttggagtaaacagcgaaagagaaggaaaattgcacgtatgaatagaggaggaattggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatgaaaggaaagcaagcattacggagttctatgctgttatttatccctccttacttcaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18568" stop="16153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18268" g_stop="17984" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="436" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="503" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16453" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="533" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E267962" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18268" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTTCAACTTG</genome_strand>
        <mrna_strand>AGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAACAGCGAAAGAGAAGGAAAATTGCACGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTACGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTTCAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707028" ref_strand="+" ref_description="SGN-E707028 [FA31DD10]">
      <seq>ggaaaattcttacaagagaatcgaatagattttgatttgaggaaaaaaaggggtggtgttgaagtggatttgtgatggtaaggagtgtttggttgtgagtaaaattcgttttttcttttttgggttttgggtggttggagtaaagagcgaaagagaaggaaaattgcaggtatgaatagaggaggaattggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagtccagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatgaaaggaaagcaagcattagggagttctatgctgttatttatccctccttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18552" stop="16160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18252" g_stop="17984" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="420" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16584" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="487" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.834" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16482" g_stop="16460" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="510" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E707028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18252" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16584"/>
          <exon e_start="16482" e_stop="16460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATGGTGATTTTCTACTTTTTCCTTCATTTTTTCATTCATGTGAACTGTTAAGAGTAATCAGCTATACTGAATAATGGTTGCTATTCATCATTAATATTGTGCAGCTGTTATTTATCCCTCCTTACTT</genome_strand>
        <mrna_strand>GGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG.....................................................................................................CTGTTATTTATCCCTCCTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300645" ref_strand="+" ref_description="SGN-E300645 [cLET-45-N9]">
      <seq>aaacagagtcatcaaaatttggggaaaattcttacaagagaatcgaatagattttgatttgaggaaaaaaaggggtggtgttgaagtggatttgtgatggtaaggagtgtttggttgtgagtaaaattcggtttttcttttttgggttttgggtggttggagtaaagagcgaaagagaaggaaaattgcaggtatgaatagaggaggaattggaattggagggccaatgcgaaagtcttttaaggactctcttaaagttcttgaagctgatattcagcatgctaatactctggcatctgactttccccgagagtacgatggggcctgcctacagatgagaatgtcctacagttcagcagcgcacctgttccttttcttagtccagtggactgattgccaccttgctggtgcacttggattgttgagaattcttatttacaaggtttatgttgatggcaccacaaccatgtcagttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18574" stop="16314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18274" g_stop="17984" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16753" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="442" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16650" g_stop="16614" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="479" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E300645" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18274" e_stop="17984"/>
          <exon e_start="16903" e_stop="16753"/>
          <exon e_start="16650" e_stop="16614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAGGTATGGATGTTCATGTTCATGCATTGCTAATTCCCTCTGTCTCAAGCTTTTTTTCATGTTGCAATAATGCGGCGTTGAACTGGATTTTTCTTTGGGCTCTAGGTTTATGTTGATGGCACCACAACCATGTCAGTTCATG</genome_strand>
        <mrna_strand>AAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGGTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTTCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG......................................................................................................GTTTATGTTGATGGCACCACAACCATGTCAGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554774" ref_strand="+" ref_description="SGN-E554774 [cTSC-5-G10]">
      <seq>cttcattctgtacattaaaagaagctgtgaaaaagaaagaagaaacagagtcatcaaaatttggggaaaattcttacaagagaatcgaatagattttgatttgaggaaaaaaaggggtggtgttgaagtggatttgtgatggtaaggagtgtttggttgtgagtaaaattcgttttttcttttttgggttttgggtggttggagtaaagagcgaaagagaaggaaaattgcaggtatgaatagaggaggaattggaattggagggtctatgcgaaagtcttttaaggattctcttaaagttcttgaatctgatattcagcatgctaatactctggcatctgactttccccgagagtactatggggcctgcctacagatgagaatgtcctacagtccaccaatgcacctgttccttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="18616" stop="16519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18316" g_stop="17984" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16903" g_stop="16819" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="418" r_length="85" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E554774" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18316" e_stop="17984"/>
          <exon e_start="16903" e_stop="16819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTCTGTACAGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCTGTGAGTCAAACTTCTTTTTCATCATCATCAACATCCTTGAAAAAAAAAACAGAACTTTTTTGTTGCTCTTGTTTATCAGTTATGCTTGGGGATAAATCTTTATTGTTGTTTTCTGGAGTTTTACTGTATTTCTGTAAGACCCTTTTTGTTTTTTCTTTTCCCTTTTCCATGATTTTATGGCTTCAGAGTCTTAACCATTTCAAATTTCAAGTATGCTCTTGTTTCTGATAATTTGGTTCAGAGGTGATTTTTTTCTCTTTGATTGCTGGTCTATTTTGTTCTGAATGATTTTTATGATATGGGGTTTTATTTCTTGCCAAAAAGTTTGAAACTTTTTCTCTGATTTTTCTGTGTCTTGATTTTCATCTCTTAACATTCTATAAGTTCTTTTTTTCTACTGTTCTTTTTTTTTTCTGGTTAGATTTGCTAAGATTTGGTGGCAGTGGTGACAGTTTTCGCCTTCCTCTTTTTGTTTTTTCTGTGTTTAGAATTGTAGTGCTTTTGAATAAGGTTGTTATCAGTGTTTGTTTTGAGTTCACTTCTTTGATTGCTTCAAAAGGAGATAAAGTTATCATTTTCAAGGGTAATCTGATGCTTAGCTTGTAAAAAGCGTCTAAACTCTAATATTATGATTAATAAATAACCCTTTTTTTATGATTCCAAGGCATACCTTCATCCTGACTATATCCATTTTAGGAACTTACTGTAGGGTTAGTCTGCTAGTTTTCCGCACCTTTTTTGTGGGTGGGTTGTGTGGGAGTGGGGTAGAGGTTCTTATTTTTGTAATGGTGTCCCTTCCTTGAATTTCAATTTGTTGCAATGTGGTTACATAGCTGAACAATATTAAGAGGAAGTTAATTGTTGCATTGTCCATTCTGTATTCCTTGTTTCTACCGTTCTATTTTTCTTTTCCCACTTCCCTCCTTTATTAGTGGCTTTTGCAATTCGGTTAGGATGGTTTGATGAACTTTTCTTTGTTCTATATGGTGAACATGTTTGTCTGGACCTGGTAATTCAGTGGTTAGTTCTTCCTTGATAGTTCTGTCATTTGGAATGTGATTGTTGGAATTTGGGGTGCAGGGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTC</genome_strand>
        <mrna_strand>CTTCATTCTGTACATTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGTCTATGCGAAAGTCTTTTAAGGATTCTCTTAAAGTTCTTGAATCTGATATTCAGCATGCTAATACTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCTGACTTTCCCCGAGAGTACTATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCACCAATGCACCTGTTCCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247960" ref_strand="+" ref_description="SGN-E247960 [cLEF-47-N6]">
      <seq>tttggtggattttcttagtggggttgatgtagagattggtaatttgaagaagggtgttaggaaaggaattgagaataatcaaattactgtggaagatttgggaagtttcgaaaagagtctggaatctataaatttttctgctctcaatgctagaaaggttatagaaggttgtattgaaagcttgtcaattgatggacaagatatagggggggaaatcagtcaaaaatcgagtaagaagaagaaggagccgggtaaatatggcttcgacttctttcagattgctgctggtctgtttcaagcaaagtcgggttcgaagtctactaaaatgaaagatcatggtgacactgagttaatggacagaaagatgaatggccctaagcaagggaatatcttgagttctactactaaagaaagacatttgaattttgatatggatctagacggccttagtggcacttcaaggcacagtttcaatgatgatgccattagacaagacagagtgggtgagacatttgggaaggctagcagaatgaatgtagtttctgatggaaatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="29680" stop="30836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29980" g_stop="30536" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E247960" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29980" e_stop="30536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTGGATTTTCTTAGTGGGGTTGATGTAGAGATTGGTAATTTGAAGAAGGGTGTTAGGAAAGGAATTGAGAATAATCAAATTACTGTGGAAGATTTGGGAAGTTTCGAAAAGAGTCTGGAATCTATAAATTTTTCTGCTCTCAATGCTAGAAAGGTTATAGAAGGTTGTATTGAAAGCTTGTCAATTGATGGACAAGATATAGGGGGGGAAATCAGTCAAAAATCGAGTAAGAAGAAGAAGGAGCCGGGTAAATATGGCTTCGACTTCTTTCAGATTGCTGCTGGTCTGTTTCAAGCAAAGTCGGGTTCGAAGTCTACTAAAATGAAAGATCATGGTGACACTGAGTTAATGGACAGAAAGATGAATGGCCCTAAGCAAGGGAATATCTTGAGTTCTACTACTAAAGAAAGACATTTGAATTTTGATATGGATCTAGACGGCCTTAGTGGCACTTCAAGGCACAGTTTCAATGATGATGCCATTAGACAAGACAGAGTGGGTGAGACATTTGGGAAGGCTAGCAGAATGAATGTAGTTTCTGATGGAAATTTCA</genome_strand>
        <mrna_strand>TTTGGTGGATTTTCTTAGTGGGGTTGATGTAGAGATTGGTAATTTGAAGAAGGGTGTTAGGAAAGGAATTGAGAATAATCAAATTACTGTGGAAGATTTGGGAAGTTTCGAAAAGAGTCTGGAATCTATAAATTTTTCTGCTCTCAATGCTAGAAAGGTTATAGAAGGTTGTATTGAAAGCTTGTCAATTGATGGACAAGATATAGGGGGGGAAATCAGTCAAAAATCGAGTAAGAAGAAGAAGGAGCCGGGTAAATATGGCTTCGACTTCTTTCAGATTGCTGCTGGTCTGTTTCAAGCAAAGTCGGGTTCGAAGTCTACTAAAATGAAAGATCATGGTGACACTGAGTTAATGGACAGAAAGATGAATGGCCCTAAGCAAGGGAATATCTTGAGTTCTACTACTAAAGAAAGACATTTGAATTTTGATATGGATCTAGACGGCCTTAGTGGCACTTCAAGGCACAGTTTCAATGATGATGCCATTAGACAAGACAGAGTGGGTGAGACATTTGGGAAGGCTAGCAGAATGAATGTAGTTTCTGATGGAAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324567" ref_strand="+" ref_description="SGN-E324567 [cTOC-9-J9]">
      <seq>ctgattctattgattttggcgtcggtgtggagcaaagcggtactgaagcatcttcgttgcatgaaaaggacgtcgagaattttgaaggagtaaggagccattttggtggaaaagaaaatgatgaagacacctacagtcattttcttggagaagagatgagaaaccctgaaaaggaaccctccatgggtagagatgaggcctcaaatgaatgtgaatctggtcactctccatcttcaagaggttccattgatttgcaatttaataagtaccttactgaggcaaatattctagtacaagaagcaaaggactgtttaaagaggcaagacggcgacaagcatgctgagaatgcgttttacgagtctgctgtattgctctcaaaagctatagatatccgccccatgagtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="30396" stop="31403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30696" g_stop="31103" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E324567" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30696" e_stop="31103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTCTATTGATTTTGGCGTCAGTATGGAGCAAAGCAATACTGAAGCATCTTCGTTGCATGAAAAGGACGTCGAGAATTTTGAAGGAGTAAGGAGCCATTTTGGTGGAAAAGAAAATGATGAAGACACCTACAGTCATTTTCTTGGAGAAGAGATGAGAAACCCTGAAAAGGAACCCTCCATGGGTAGAGATGAGGCCTCAAATGAATGTGAATCTGGTCACTCTCCATCTTCAGGAGGTTCCATTGATTTGCAATTTAATAAGTACCTTACTGAGGCAAATATTCTAGTACAAGAAGCAAAGGACTGTTTAAGGAGGCAAGACGGCGACAAGCATGCTGAGAATGCGTTTTACGAGTCTGCTGTATTGCTCTCAAAAGCTATAGATATCCGCCCCATGAGTTTAT</genome_strand>
        <mrna_strand>CTGATTCTATTGATTTTGGCGTCGGTGTGGAGCAAAGCGGTACTGAAGCATCTTCGTTGCATGAAAAGGACGTCGAGAATTTTGAAGGAGTAAGGAGCCATTTTGGTGGAAAAGAAAATGATGAAGACACCTACAGTCATTTTCTTGGAGAAGAGATGAGAAACCCTGAAAAGGAACCCTCCATGGGTAGAGATGAGGCCTCAAATGAATGTGAATCTGGTCACTCTCCATCTTCAAGAGGTTCCATTGATTTGCAATTTAATAAGTACCTTACTGAGGCAAATATTCTAGTACAAGAAGCAAAGGACTGTTTAAAGAGGCAAGACGGCGACAAGCATGCTGAGAATGCGTTTTACGAGTCTGCTGTATTGCTCTCAAAAGCTATAGATATCCGCCCCATGAGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556077" ref_strand="+" ref_description="SGN-E556077 [cTSD-2-F18]">
      <seq>ggacagttgggaaatacttaccttcttcatggagaacttaagttaaggatcagccgtgatttgagagctttactaactgatgctgtatcattaaataaacgggctaaaatacgtgatgcgctagatgatacggttccaagggaagacaaaattacatcttatcttgtaaatgtatgtgaagagtgtgaagaactacttattaaggcaggaagacagtataggttagccttgtcgatagatgggaatgatatgagagctttgtataattggggaattgctctctcgttgcgtgggcagttgattgcagacattggacctggttctgcacgtgatgccgacaaagttttcttggctgcaattgataagttcgatgcaatgatctccagaggaaatgtatatgcacctgatgctcttttcagatgggccacagcattgcagcacagatctcgcctacgacctagaacaagtagagagaaggtgaagttattgcagcaggctcaaaggttatacaaagatgcccttcatatggactccgataaccttcaagcacgaaaggccctgtcatcctgcatatctgagctcaagtactggtatagatagtcatacaataaattttagttatccttctttttctccatttgataacataaaccaagtttacatatttatcattccccatatggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="30812" stop="32955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31112" g_stop="31429" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31430" i_stop="31635" i_length="206">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31636" g_stop="31726" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="409" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31727" i_stop="32378" i_length="652">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32379" g_stop="32655" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="686" r_length="277" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E556077" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31112" e_stop="31429"/>
          <exon e_start="31636" e_stop="31726"/>
          <exon e_start="32379" e_stop="32655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAGTTGGGAAATACTTACCTTCTTCATGGAGAACTTAAGTTAAGGATCAGCCGTGATTTGAGAGCTTTACTAACTGATGCTGTATCATTAAATAAACGGGCTAAAATACGTGATGCGCTAGATGATACGGTTCCAAGGGAAGACAAAATTACATCTTATCTTGTAAATGTATGTGAAGAGTGTGAAGAACTACTTATTAAGGCAGGAAGACAGTATAGGTTAGCCTTGTCGATAGATGGGAATGATATGAGAGCTTTGTATAATTGGGGAATTGCTCTCTCGTTGCGTGGGCAGTTGATTGCAGACATTGGACCTGTAAGCATCTTTCTTGAGATTACTTGGTTTAATTTTCTCTTTTCTGATGGTTTGAACTGAAAATTGTGAAATGAGATCAATATCTCATATTATGGACTAAATTCAAATAGCATTGCTTAGCAGTTCTCTGCTCTCTCACTAAAGCTACTAGATTGTTTGGGAACTTTTTCTACCCCTTTCATAGTCAATGTTCTGCCAAATTTCAGGGTTCTGCACGTGATGCCGACAAAGTTTTCTTGGCTGCAATTGATAAGTTCGATGCAATGATCTCCAGAGGAAATGTATATGCACCTGATGGTATGAGAAATAACTATTCGTCCATACTGTAAATTTAGAGTCTTTACTAATCCATGGTTGCCTCTTTTTTTTTTTTTTTTTTTGTCTTTACATTTTAATAAGAGAAGTAGGAAGAAGTATTTTAGAATCCTGGGCTTATAATCATTCCAGCAATGACCGTTGTTTAACTGTTCTTCTTTCTCTCTTTTGCGGTGGAGCTACAAAATCTATCAACAATAAAGGAGCTCGCCCTGCCACTTCTTCGTCATCAGTTCCTAATGTTTTGATTAGGAACTAATGAAAGGAGAAAGTTGGTGTCATCTCTGGGCCAGTTGATGATGTATGAGCTTTTGATATTCTCTCGTCTCCTTTTGCTTTGCTAAAAGTTGAACTGGTAAAAGTGATGTGTCATCTTTGGCGAACTTAAAGTTAGATAAGAACAAATGAACTAGTAAGTGCGCGTGGAAAGCAAATATCATCCCCCTCTCCTCGCATTTATGCTGCTCATTGTTTTAATAATAATAGTAATGAGCTGGTCATTATATAGCTAGGCCTTAATGGATGAGTAGCATCAGCATCATTAAGATGGAGTTACTATTTCACAAAGAAGGAAAAGAAAAGAATTCTATGGATTACTTAACATGTGGGCTTACGACAAATTTTCTTCGTACAGCTCTTTTCAGATGGGCCACAGCATTGCAGCACAGATCTCGCCTACGACCTAGAACAAGTAGAGAGAAGGTGAAGTTATTGCAGCAGGCTCAAAGGTTATACAAAGATGCCCTTCATATGGACTCCGATAACCTTCAAGCACGAAAGGCCCTGTCATCCTGCATATCTGAGCTCAAGTACTGGTATAGATAGTCATACAATAAATTTTAGTTATCCTTCTTTTTCTCCATTTGATAACATAAACCAAGTTTACATATTTATCAGTACCCATATGGTTG</genome_strand>
        <mrna_strand>GGACAGTTGGGAAATACTTACCTTCTTCATGGAGAACTTAAGTTAAGGATCAGCCGTGATTTGAGAGCTTTACTAACTGATGCTGTATCATTAAATAAACGGGCTAAAATACGTGATGCGCTAGATGATACGGTTCCAAGGGAAGACAAAATTACATCTTATCTTGTAAATGTATGTGAAGAGTGTGAAGAACTACTTATTAAGGCAGGAAGACAGTATAGGTTAGCCTTGTCGATAGATGGGAATGATATGAGAGCTTTGTATAATTGGGGAATTGCTCTCTCGTTGCGTGGGCAGTTGATTGCAGACATTGGACCT..............................................................................................................................................................................................................GGTTCTGCACGTGATGCCGACAAAGTTTTCTTGGCTGCAATTGATAAGTTCGATGCAATGATCTCCAGAGGAAATGTATATGCACCTGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTTTCAGATGGGCCACAGCATTGCAGCACAGATCTCGCCTACGACCTAGAACAAGTAGAGAGAAGGTGAAGTTATTGCAGCAGGCTCAAAGGTTATACAAAGATGCCCTTCATATGGACTCCGATAACCTTCAAGCACGAAAGGCCCTGTCATCCTGCATATCTGAGCTCAAGTACTGGTATAGATAGTCATACAATAAATTTTAGTTATCCTTCTTTTTCTCCATTTGATAACATAAACCAAGTTTACATATTTATCATTCCCCATATGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547448" ref_strand="+" ref_description="SGN-E547448 [TUS-71-F9]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtgggcgcatatgactttgggctattttattctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="34319" stop="35576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34619" g_stop="35287" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E547448" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34619" e_stop="35287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCAACCCCCATACCCATACACCAATGGTTATCTTCTTCTCCCACCATTCTACTGATTTCAAAATTCTTAGTCTTAGTGTTTATCTTCTTCCCCCACCATTCTAAAGGTTTCAAAATTCTTAACATTTTGTTTCATTTATAAATTTTTTCGGAGAGATTTTTTTGCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAATAAAAAAGCTGATGAAAAAAAAA-TTGTTGGGTTAAAGATGGAACTGTATAGGGAGGGGAGGGAGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGGGCAGGGAAGTGGGTGTTTAAGTTTTATTTATTTTTTTCATTTTTTTTACTTTAAAATAATCTTTTAAATTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTAATTGGTCAAATTGACATGTCAGCACGAGTGTATTTCACACATCCTCT-TTTTTTGTTTATTCTCGAAAAAATATTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTAAGTGGCCGCATATGACTTTGGCCTAAAAATATCTAT</genome_strand>
        <mrna_strand>CCCACCCCAACCCCTATCCCCATACACCAGTGGTTATCTTCTTC-CCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCATTTTGTTTCATTTATAAA-TTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATGAAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTACAGGGA---G-GGG-GGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAA--GGCAGGG-A---GGTGTTTAGGTTTTACTTTTTTTTTAAATTTTTTTTACTTTAAAATAAT-TTTT-ATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGGCGCATATGACTTTGGGCTATTTTATTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238001" ref_strand="-" ref_description="SGN-E238001 [cLED-18-N9]">
      <seq>gaactaatagatgaagaggttttcactgtcttcatcatcatcttctgcttcaagctgttcatcagatgatgaatcaggctcaagcaaagttactgtgctaggacgatattcttcagcaagaagatccgaggcgattacttgttatccatggagttcattggtggctgtgatgatccaagctctagcacatcgcgctaattccatttgggtgatggatgaagatcacaatttgatcggagttgtaacatttaaaggaattctggaagttttcaggagtatcgctaatgcgaagcgtaaaccagaaagggagaatacatcaaagcaataatacacaattaaatgccacatatgttgagttaattttttcttaaatgtcatcatatttattgtgttctatttttatttttattttgaaaatgggactatgtttgcataaattttgcttaaatgaactgaagaactgaaacttcttggggatgcttggaaaaaaaaaaaaaaaaactcgagaatagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="36550" stop="31475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36250" g_stop="35758" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35757" i_stop="34800" i_length="958">
            <donor d_prob="0.469" d_score="0.90"/>
            <acceptor a_prob="0.732" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34799" g_stop="34777" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="517" r_length="23" r_score="0.565"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E238001" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238001" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36250" e_stop="35758"/>
          <exon e_start="34799" e_stop="34777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTAATAGATGAAGA-GTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGGGGATGCTTGGAAAACACTCTGTTTGAACTACTTTTTATCAAATTCTCCCTATTAAATGATGAGGATAAGTATTTAATGACGACGATAAAAATATGAAAACATATAATTGTCCATAAAAATCTATTTTGAGAAAAGCGACGAAAAAGGTGAATGGATGCTACTATCAAGGACCCTTTTGTCTTGTATTAATATGCGAAAAAAAATTACCGTACTTTTTATATAATTTTAAAATATTTATTTTTTTTTGTTTAAAATACTAAAGTAATGTGATCTAATTTAATTTTAAAAATTAGTTAAATTGACTTTCAAAAAGCATACTATGACAAATAATATCGAACGAGGGAATAACTTTTTCTTTTTCGGAAAAAATGACTCAGTATATTAATCGTATAACATTTTGCTCGATGCTTACATTAAAGAGGAAAGAATCTGAATTTTGTGTGGACATAATTTTTCAATCAATTATCCAGAAGCTCGCAACTTTTTTTATATAGATATTTTTAGGCCAAAGTCATATGCGGCCACTTAAACTTGTCCCGATTATTCATTTAGACACCTCAACTAGACGTACTACCTATTGAACACTTCAACCATTCTGAATTTGAACCATTTGAATATTTTTTCGAGAATAAACAAAAAAAGAGGATGTGTGAAATACACTCGTGCTGACATGTCAATTTGACCAATTAAATAATGACATGTGTTATTTTTTAATCCAAAAAATTATTTAAACATTATATTATAAAGTAAAAAAATTTAAAAGATTATTTTAAAGTAAAAAAAATGAAAAAAATAAATAAAACTTAAACACCCACTTCCCTGCCCCTTCAACTGGAACAAAACATACATTTCCTCTAACTCCATTAATGGCGACCCTCCCTCCCCTCCCTATACAGTTCCATCTTTAACCCAACAATTTTTTTTTCATCAGCTTTTTTATTAATTATAACTTTTTACTTCATCTCGTTTTTTAGGTAGAGAAAGATGGGCAAAAAAATCTC</genome_strand>
        <mrna_strand>GAACTAATAGATGAAGAGGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGGGGATGCTTGGAAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAACTCGAGAATAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377235" ref_strand="+" ref_description="SGN-E377235 [TUS-19-N10](-)">
      <seq>caaaattcgggggtatattgagcagagctcagttgcagttgttgatgaagacaaccgattgattggtgaaatctctcccttcactctagcctactgtgatgagaccgttgcagcagcaatcgcgacactttcagctggtgatttcatgacttacatcgactacggtggtcctccaaaggacttgatcgagttggtcaaaatgaggttacaaaaaaaaaaacttggggcaatggttgaactaataaatgaaaagttttcacggttttcatcatcattttttgcttcaagctgttcatcaaatgatgaatcaggctcaagcaaagttactgtgttaggacgatatttttcagcaaaaaaatccgaggggattacttgttatccatggagttcattgggggctgtgatgatccaagctttagcacatcgcgctaattccatttgggtgatggatgaagatcccaatttgatcggagttgtaacatttaaaggaattttggaagttttcaggagtatcgctaatgcgaagggtaaaccagaaagggagaatacatcaaagcaataatacccaattaaatgccccatatgttgagttaatttttttttaaatgtcatcatatttattgggtttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="36785" stop="31491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36485" g_stop="35862" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35861" i_stop="35015" i_length="847">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.72"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35014" g_stop="34968" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="670" r_length="46" r_score="0.723"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E377235" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36485" e_stop="35862"/>
          <exon e_start="35014" e_stop="34968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGGGGATGCTTGGAAAACACTCTGTTTGAACTACTTTTTATCAAATTCTCCCTATTAAATGATGAGGATAAGTATTTAATGACGACGATAAAAATATGAAAACATATAATTGTCCATAAAAATCTATTTTGAGAAAAGCGACGAAAAAGGTGAATGGATGCTACTATCAAGGACCCTTTTGTCTTGTATTAATATGCGAAAAAAAATTACCGTACTTTTTATATAATTTTAAAATATTTATTTTTTTTTGTTTAAAATACTAAAGTAATGTGATCTAATTTAATTTTAAAAATTAGTTAAATTGACTTTCAAAAAGCATACTATGACAAATAATATCGAACGAGGGAATAACTTTTTCTTTTTCGGAAAAAATGACTCAGTATATTAATCGTATAACATTTTGCTCGATGCTTACATTAAAGAGGAAAGAATCTGAATTTTGTGTGGACATAATTTTTCAATCAATTATCCAGAAGCTCGCAACTTTTTTTATATAGATATTTTTAGGCCAAAGTCATATGCGGCCACTTAAACTTGTCCCGATTATTCATTTAGACACCTCAACTAGACGTACTACCTATTGAACACTTCAACCATTCTGAATTTGAACCATTTGAATATTTTTTCGAGAATAAACAAAAAAAGAGGATGTGTGAAATACACTCGTGCTGACATGTCAATTTGACCAATTAAATAATGACATGTGTTATTTTTTAATCCAAAAAATTATTTAAACATTATATTATAAAGTAAAAAAATTTAAAAGATTATTTTAAAGTAAAAAAAATGAAAAAAATAAATAAAACTTAAACA</genome_strand>
        <mrna_strand>CAAAATTCGGGGGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATTTCATGACTTACATCGACTACGGTGGTCCTCCAAAGGACTTGATCGAGTTGGTCAAAATGAGGTTACAAAAAAAAAAACTTGGGGCAATGGTTGAACTAATAAATGAAAAGTTTTCACGGTTTTCATCATCATTTTTTGCTTCAAGCTGTTCATCAAATGATGAATCAGGCTCAAGCAAAGTTACTGTGTTAGGACGATATTTTTCAGCAAAAAAATCCGAGGGGATTACTTGTTATCCATGGAGTTCATTGGGGGCTGTGATGATCCAAGCTTTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCCCAATTTGATCGGAGTTGTAACATTTAAAGGAATTTTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGGGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACCCAATTAAATGCCCCATATGTTGAGTTAATTTTTTTTTAAATGTCATCATATTTATTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397517" ref_strand="+" ref_description="SGN-E397517 [TUS-45-L10](-)">
      <seq>aaatctctcccttcactctagcctactgtgatgagaccgttgcagcagcaatcgcgacactttcagctggtgatttcatgacttacatcgactacggtggtcctccagaggacttgatcgagttggtcaagatgaggttacaagaaaagaaacttggggcaatggttgaactaatagatgaagagttttcactgttttcatcatcattttttgcttcaagctgttcatcagatgatgaatcaggctcaagcaaagttactgtgctaggacgatatttttcagcaagaagatccgaggggattacttgttatccatggagttcattggtggctgtgatgatccaagctttagcacatcgcgctaattccatttgggtgatggatgaagatcacaatttgatcggagttgtaacatttaaaggaattttggaagttttcaggagtatcgctaatgggaagggtaaacccgaaagggggaatacatcaaagcaataatacccaattaaatgccccatatgttgagttaatttttttttaaatgtcatcatatttattgtgttttatttttatttttattttgaaaatgggactatgtttgcataaattttgcttaaatgaactgaagaactgaaactttttgggaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="36717" stop="31493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36417" g_stop="35778" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35777" i_stop="35003" i_length="775">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35002" g_stop="34977" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="666" r_length="26" r_score="0.808"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E397517" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36417" e_stop="35778"/>
          <exon e_start="35002" e_stop="34977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGGGGATGCTTGGAAAACACTCTGTTTGAACTACTTTTTATCAAATTCTCCCTATTAAATGATGAGGATAAGTATTTAATGACGACGATAAAAATATGAAAACATATAATTGTCCATAAAAATCTATTTTGAGAAAAGCGACGAAAAAGGTGAATGGATGCTACTATCAAGGACCCTTTTGTCTTGTATTAATATGCGAAAAAAAATTACCGTACTTTTTATATAATTTTAAAATATTTATTTTTTTTTGTTTAAAATACTAAAGTAATGTGATCTAATTTAATTTTAAAAATTAGTTAAATTGACTTTCAAAAAGCATACTATGACAAATAATATCGAACGAGGGAATAACTTTTTCTTTTTCGGAAAAAATGACTCAGTATATTAATCGTATAACATTTTGCTCGATGCTTACATTAAAGAGGAAAGAATCTGAATTTTGTGTGGACATAATTTTTCAATCAATTATCCAGAAGCTCGCAACTTTTTTTATATAGATATTTTTAGGCCAAAGTCATATGCGGCCACTTAAACTTGTCCCGATTATTCATTTAGACACCTCAACTAGACGTACTACCTATTGAACACTTCAACCATTCTGAATTTGAACCATTTGAATATTTTTTCGAGAATAAACAAAAAAAGAGGATGTGTGAAATACACTCGTGCTGACATGTCAATTTGACCAATTAAATAATGACATGTGTTATTTTTTAATCCAAAAAATTATTTAAACATTATATTATAAAGTAAAAAAATTTAAAAGATTATTTTAAAGTAAAAAAAATGAAAAAAATAAATAAA</genome_strand>
        <mrna_strand>AAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATTTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTTTTCATCATCATTTTTTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTTTTCAGCAAGAAGATCCGAGGGGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTTTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTTTGGAAGTTTTCAGGAGTATCGCTAATGGGAAGGGTAAACCCGAAAGGGGGAATACATCAAAGCAATAATACCCAATTAAATGCCCCATATGTTGAGTTAATTTTTTTTTAAATGTCATCATATTTATTGTGTTTTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTTTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397402" ref_strand="+" ref_description="SGN-E397402 [TUS-45-L9](-)">
      <seq>gtcctccagaggactttgattgagttgttcaagatgaggtttcaagaaaagaaacttggggcaatgggtgaattaatagatgaagagttttcactgttttcatcatcattttttgcttcaagctgttcttcagatgaggaatcaggctcaagcaaagttaatgtgctaggacgatttttttcagcaagaagatccgaggcgattacttgttatccatggagttcattggtggctgtgatgatccaagctttagcacatcgcgttaattccatttgggtgagggatgaagatcacaatttgattggagttgtaacatttaaaggaattttggaagttttcaggagtatcgctaatgggaagcgtaaaccagaaagggggaatacatcaaagcaataattcccaattaaatgccacatatgttgagttaatttttttttaaatgtcatcatatttattgtgttttatttttatttttattttgaaaatgggaatatgtttgcataaattttggttaaaagaactgaagaaatgaaacttcttgggaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="36618" stop="31493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36318" g_stop="35778" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35777" i_stop="35003" i_length="775">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35002" g_stop="34977" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="568" r_length="26" r_score="0.808"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E397402" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36318" e_stop="35778"/>
          <exon e_start="35002" e_stop="34977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCTCCAGAGGAC-TTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGGGGATGCTTGGAAAACACTCTGTTTGAACTACTTTTTATCAAATTCTCCCTATTAAATGATGAGGATAAGTATTTAATGACGACGATAAAAATATGAAAACATATAATTGTCCATAAAAATCTATTTTGAGAAAAGCGACGAAAAAGGTGAATGGATGCTACTATCAAGGACCCTTTTGTCTTGTATTAATATGCGAAAAAAAATTACCGTACTTTTTATATAATTTTAAAATATTTATTTTTTTTTGTTTAAAATACTAAAGTAATGTGATCTAATTTAATTTTAAAAATTAGTTAAATTGACTTTCAAAAAGCATACTATGACAAATAATATCGAACGAGGGAATAACTTTTTCTTTTTCGGAAAAAATGACTCAGTATATTAATCGTATAACATTTTGCTCGATGCTTACATTAAAGAGGAAAGAATCTGAATTTTGTGTGGACATAATTTTTCAATCAATTATCCAGAAGCTCGCAACTTTTTTTATATAGATATTTTTAGGCCAAAGTCATATGCGGCCACTTAAACTTGTCCCGATTATTCATTTAGACACCTCAACTAGACGTACTACCTATTGAACACTTCAACCATTCTGAATTTGAACCATTTGAATATTTTTTCGAGAATAAACAAAAAAAGAGGATGTGTGAAATACACTCGTGCTGACATGTCAATTTGACCAATTAAATAATGACATGTGTTATTTTTTAATCCAAAAAATTATTTAAACATTATATTATAAAGTAAAAAAATTTAAAAGATTATTTTAAAGTAAAAAAAATGAAAAAAATAAATAAA</genome_strand>
        <mrna_strand>GTCCTCCAGAGGACTTTGATTGAGTTGTTCAAGATGAGGTTTCAAGAAAAGAAACTTGGGGCAATGGGTGAATTAATAGATGAAGAGTTTTCACTGTTTTCATCATCATTTTTTGCTTCAAGCTGTTCTTCAGATGAGGAATCAGGCTCAAGCAAAGTTAATGTGCTAGGACGATTTTTTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTTTAGCACATCGCGTTAATTCCATTTGGGTGAGGGATGAAGATCACAATTTGATTGGAGTTGTAACATTTAAAGGAATTTTGGAAGTTTTCAGGAGTATCGCTAATGGGAAGCGTAAACCAGAAAGGGGGAATACATCAAAGCAATAATTCCCAATTAAATGCCACATATGTTGAGTTAATTTTTTTTTAAATGTCATCATATTTATTGTGTTTTATTTTTATTTTTATTTTGAAAATGGGAATATGTTTGCATAAATTTTGGTTAAAAGAACTGAAGAAATGAAACTTCTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397620" ref_strand="+" ref_description="SGN-E397620 [TUS-46-K9](-)">
      <seq>gaaaagaaacttggggcaatggttgaactaatagatgaagagttttcactgtcttcatcatcattttttggttcaagctgttcatcagatgatgaatcagggtcaagcaaagttactgtggtaggacgatatttttcagcaagaagattcgaggggattacttgttatccatggagttcattggtgggtgtgatgatccaagctttagcacatcgcgctaattccatttgggtgatggatgaagatcacaatttgattggagttgtaacatttaaaggaattttggaagttttcaggagtatcggtaatgggaagggtaaaccagaaagggggaatacatcaaagcaataatacacaattaaatgccacatatgttgagttaatttttttttaaaagtcatcatatttattgtgttttatttttatttttattttgaaaatgggactatgtttgcataaattttggttaaatgaactgaagaactgaaactttttgggaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="36574" stop="31493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36274" g_stop="35778" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35777" i_stop="35003" i_length="775">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35002" g_stop="34977" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="523" r_length="26" r_score="0.808"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E397620" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36274" e_stop="35778"/>
          <exon e_start="35002" e_stop="34977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGGGGATGCTTGGAAAACACTCTGTTTGAACTACTTTTTATCAAATTCTCCCTATTAAATGATGAGGATAAGTATTTAATGACGACGATAAAAATATGAAAACATATAATTGTCCATAAAAATCTATTTTGAGAAAAGCGACGAAAAAGGTGAATGGATGCTACTATCAAGGACCCTTTTGTCTTGTATTAATATGCGAAAAAAAATTACCGTACTTTTTATATAATTTTAAAATATTTATTTTTTTTTGTTTAAAATACTAAAGTAATGTGATCTAATTTAATTTTAAAAATTAGTTAAATTGACTTTCAAAAAGCATACTATGACAAATAATATCGAACGAGGGAATAACTTTTTCTTTTTCGGAAAAAATGACTCAGTATATTAATCGTATAACATTTTGCTCGATGCTTACATTAAAGAGGAAAGAATCTGAATTTTGTGTGGACATAATTTTTCAATCAATTATCCAGAAGCTCGCAACTTTTTTTATATAGATATTTTTAGGCCAAAGTCATATGCGGCCACTTAAACTTGTCCCGATTATTCATTTAGACACCTCAACTAGACGTACTACCTATTGAACACTTCAACCATTCTGAATTTGAACCATTTGAATATTTTTTCGAGAATAAACAAAAAAAGAGGATGTGTGAAATACACTCGTGCTGACATGTCAATTTGACCAATTAAATAATGACATGTGTTATTTTTTAATCCAAAAAATTATTTAAACATTATATTATAAAGTAAAAAAATTTAAAAGATTATTTTAAAGTAAAAAAAATGAAAAAAATAAATAAA</genome_strand>
        <mrna_strand>GAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATTTTTTGGTTCAAGCTGTTCATCAGATGATGAATCAGGGTCAAGCAAAGTTACTGTGGTAGGACGATATTTTTCAGCAAGAAGATTCGAGGGGATTACTTGTTATCCATGGAGTTCATTGGTGGGTGTGATGATCCAAGCTTTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATTGGAGTTGTAACATTTAAAGGAATTTTGGAAGTTTTCAGGAGTATCGGTAATGGGAAGGGTAAACCAGAAAGGGGGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTTTTAAAAGTCATCATATTTATTGTGTTTTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGGTTAAATGAACTGAAGAACTGAAACTTTTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398759" ref_strand="+" ref_description="SGN-E398759 [TUS-46-K11](-)">
      <seq>atgatccaagctttagcccctcgcgataattccatttgggtgatggatgaagatcccaatttgattggagttgtaacctttaaaggaattttggaagttttcaggggtatcgctaatgggaagcgtaaacccgaaagggggaatacatcaaagcaataatacccaattaaatgccccatatgttgagttaatttttttttaaatgtcatcatatttattgtgttctatttttatttttattttgaaaatgggactatgtttgcataaatttaggttaaatgaactgaagaactgaaactttttgggaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="36382" stop="31493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36082" g_stop="35778" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35777" i_stop="35003" i_length="775">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35002" g_stop="34977" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="331" r_length="26" r_score="0.808"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E398759" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36082" e_stop="35778"/>
          <exon e_start="35002" e_stop="34977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGGGGATGCTTGGAAAACACTCTGTTTGAACTACTTTTTATCAAATTCTCCCTATTAAATGATGAGGATAAGTATTTAATGACGACGATAAAAATATGAAAACATATAATTGTCCATAAAAATCTATTTTGAGAAAAGCGACGAAAAAGGTGAATGGATGCTACTATCAAGGACCCTTTTGTCTTGTATTAATATGCGAAAAAAAATTACCGTACTTTTTATATAATTTTAAAATATTTATTTTTTTTTGTTTAAAATACTAAAGTAATGTGATCTAATTTAATTTTAAAAATTAGTTAAATTGACTTTCAAAAAGCATACTATGACAAATAATATCGAACGAGGGAATAACTTTTTCTTTTTCGGAAAAAATGACTCAGTATATTAATCGTATAACATTTTGCTCGATGCTTACATTAAAGAGGAAAGAATCTGAATTTTGTGTGGACATAATTTTTCAATCAATTATCCAGAAGCTCGCAACTTTTTTTATATAGATATTTTTAGGCCAAAGTCATATGCGGCCACTTAAACTTGTCCCGATTATTCATTTAGACACCTCAACTAGACGTACTACCTATTGAACACTTCAACCATTCTGAATTTGAACCATTTGAATATTTTTTCGAGAATAAACAAAAAAAGAGGATGTGTGAAATACACTCGTGCTGACATGTCAATTTGACCAATTAAATAATGACATGTGTTATTTTTTAATCCAAAAAATTATTTAAACATTATATTATAAAGTAAAAAAATTTAAAAGATTATTTTAAAGTAAAAAAAATGAAAAAAATAAATAAA</genome_strand>
        <mrna_strand>ATGATCCAAGCTTTAGCCCCTCGCGATAATTCCATTTGGGTGATGGATGAAGATCCCAATTTGATTGGAGTTGTAACCTTTAAAGGAATTTTGGAAGTTTTCAGGGGTATCGCTAATGGGAAGCGTAAACCCGAAAGGGGGAATACATCAAAGCAATAATACCCAATTAAATGCCCCATATGTTGAGTTAATTTTTTTTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTAGGTTAAATGAACTGAAGAACTGAAACTTTTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241502" ref_strand="+" ref_description="SGN-E241502 [cLED-28-J19]">
      <seq>gagaactagtctcgagtttttttttttttttttccaagcatccccaagaagtttcagttcttcagttcatttaagcaaaatttatgcaaacatagtcccattttcaaaataaaaataaaaatagaacacaataaatatgatgacatttaagaaaaaattaactcaacatatgtggcatttaattgtgtattattgctttgatgtattctccctttctggtttacgcttcgcattagcgatactcctgaaaacttccagaattcctttaaatgttacaactccgatcaaattgtgatcttcatccatcacccaaatggaattagcgcgatgtgctagagcttggatcatcacagccaccaatgaactccatggataacaagtaatcgcctcggatcttcttgctgaagaatatcgtcctagcacagtaactttgcttgagcctgattcatcatctgatgaacagcttgaagcagaagatgatgatgaagacagtgaaaactcttcatctattagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="31481" stop="36550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35731" g_stop="36250" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E241502" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35731" e_stop="36250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATTTGATAAAAAGTAGTTCAAACAGAGTGTTTTCCAAGCATCCCCAAGAAGTTTCAGTTCTTCAGTTCATTTAAGCAAAATTTATGCAAACATAGTCCCATTTTCAAAATAAAAATAAAAATAGAACACAATAAATATGATGACATTTAAGAAAAAATTAACTCAACATATGTGGCATTTAATTGTGTATTATTGCTTTGATGTATTCTCCCTTTCTGGTTTACGCTTCGCATTAGCGATACTCCTGAAAACTTCCAGAATTCCTTTAAATGTTACAACTCCGATCAAATTGTGATCTTCATCCATCACCCAAATGGAATTAGCGCGATGTGCTAGAGCTTGGATCATCACAGCCACCAATGAACTCCATGGATAACAAGTAATCGCCTCGGATCTTCTTGCTGAAGAATATCGTCCTAGCACAGTAACTTTGCTTGAGCCTGATTCATCATCTGATGAACAGCTTGAAGCAGAAGATGATGATGAAGACAGTGAAAACTCTTCATCTATTAGTTC</genome_strand>
        <mrna_strand>GAGAACTAG-T--CTCG-AGTTTTTTTTTTTTTTTTTCCAAGCATCCCCAAGAAGTTTCAGTTCTTCAGTTCATTTAAGCAAAATTTATGCAAACATAGTCCCATTTTCAAAATAAAAATAAAAATAGAACACAATAAATATGATGACATTTAAGAAAAAATTAACTCAACATATGTGGCATTTAATTGTGTATTATTGCTTTGATGTATTCTCCCTTTCTGGTTTACGCTTCGCATTAGCGATACTCCTGAAAACTTCCAGAATTCCTTTAAATGTTACAACTCCGATCAAATTGTGATCTTCATCCATCACCCAAATGGAATTAGCGCGATGTGCTAGAGCTTGGATCATCACAGCCACCAATGAACTCCATGGATAACAAGTAATCGCCTCGGATCTTCTTGCTGAAGAATATCGTCCTAGCACAGTAACTTTGCTTGAGCCTGATTCATCATCTGATGAACAGCTTGAAGCAGAAGATGATGATGAAGACAGTGAAAACTCTTCATCTATTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240746" ref_strand="+" ref_description="SGN-E240746 [cLED-24-M17]">
      <seq>gagaactagtctcgagtttttttttttttttttccaagcatccccaagaagtttcagttcttcagttcatttaagcaaaatttatgcaaacatagtcccattttcaaaataaaaataaaaatagaacacaataaatatgatgacatttaagaaaaaattaactcaacatatgtggcatttaattgtgtattattgctttgatgtattctccctttctggtttacgcttcgcattagcgatactcctgaaaacttccagaattcctttaaatgttacaactccgatcaaattgtgatcttcatccatcacccaaatggaattagcgcgatgtgctagagcttggatcatcacagccaccaatgaactccatggataacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="31481" stop="36413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35731" g_stop="36113" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E240746" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35731" e_stop="36113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATTTGATAAAAAGTAGTTCAAACAGAGTGTTTTCCAAGCATCCCCAAGAAGTTTCAGTTCTTCAGTTCATTTAAGCAAAATTTATGCAAACATAGTCCCATTTTCAAAATAAAAATAAAAATAGAACACAATAAATATGATGACATTTAAGAAAAAATTAACTCAACATATGTGGCATTTAATTGTGTATTATTGCTTTGATGTATTCTCCCTTTCTGGTTTACGCTTCGCATTAGCGATACTCCTGAAAACTTCCAGAATTCCTTTAAATGTTACAACTCCGATCAAATTGTGATCTTCATCCATCACCCAAATGGAATTAGCGCGATGTGCTAGAGCTTGGATCATCACAGCCACCAATGAACTCCATGGATAACAA</genome_strand>
        <mrna_strand>GAGAACTAG-T--CTCG-AGTTTTTTTTTTTTTTTTTCCAAGCATCCCCAAGAAGTTTCAGTTCTTCAGTTCATTTAAGCAAAATTTATGCAAACATAGTCCCATTTTCAAAATAAAAATAAAAATAGAACACAATAAATATGATGACATTTAAGAAAAAATTAACTCAACATATGTGGCATTTAATTGTGTATTATTGCTTTGATGTATTCTCCCTTTCTGGTTTACGCTTCGCATTAGCGATACTCCTGAAAACTTCCAGAATTCCTTTAAATGTTACAACTCCGATCAAATTGTGATCTTCATCCATCACCCAAATGGAATTAGCGCGATGTGCTAGAGCTTGGATCATCACAGCCACCAATGAACTCCATGGATAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396737" ref_strand="+" ref_description="SGN-E396737 [TUS-43-N9](-)">
      <seq>gcagcagcaatcgcgacactttcagctggtgatctcatgacttacatcgactacggtggtcctccagaggacttgatcgagttggtcaagatgaggttacaagaaaagaaacttggggcaatggttgaactaatagatgaagagttttcactgtcttcatcatcatcttctgcttcaagctgttcatcagatgatgaatcaggctcaagcaaagttactgtgctaggacgatattcttcagcaagaagatccgaggcgattacttgttatccatggagttcattggtggctgtgatgatccaagctctagcacatcgcgctaattccatttgggtgatggatgaagatcacaatttgatcggagttgtaacatttaaaggaattctggaagttttcaggagtatcgctaatgcgaagcgtaaaccagaaagggagaatacatcaaagcaataatacacaattaaatgccacatatgttgagttaattttttcttaaatgtcatcatatttattgtgttctatttttatttttattttgaaaatgggactatgtttgcataaattttgcttaaatgaactgaagaactgaaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="36676" stop="35483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36376" g_stop="35785" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="604"/>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E396737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36376" e_stop="35785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAAC</genome_strand>
        <mrna_strand>GCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379972" ref_strand="+" ref_description="SGN-E379972 [TUS-3-L16](-)">
      <seq>tatattgagcagagctcagttgcagttgttgatgaagacacccgattgattggtgaaatctctcccttcactctagcctactgtgatgagaccgttgcagcagcaatcgcgacactttcagctggtgatctcatgacttacatcgactacggtggtcctccagaggacttgatcgagttggtcaagatgaggttacaagaaaagaaacttggggcaatggttgagctaatagatgaagagttttcactgtcttcatcatcatcttctgcttcaagctgttcatcagatgatgaatcaggctcaagcaaagttactgtgctaggacgatattcttcagcaagaagatccgaggcgattacttgttatccatggagttcattggtggctgtgatgatccaagctctagcacatcgcgctaattccatttgggtgatggatgaagatcacaatttgatcggagttgtaacatttaaaggaattctggaagttttcaggagtatcgctaatgcgaagcgtaatccagaaagggagaatacatcaaagcaataatacacgggtaaatgccacatatgttgagttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="36772" stop="35591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36472" g_stop="35891" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E379972" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36472" e_stop="35891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAAT</genome_strand>
        <mrna_strand>TATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACACCCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAGCTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAATCCAGAAAGGGAGAATACATCAAAGCAATAATACACGGGTAAATGCCACATATGTTGAGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377236" ref_strand="+" ref_description="SGN-E377236 [TUS-19-N10]">
      <seq>tagattacattcttgaaggcgctcagaatctggttataccaattcaaaattctaagagcaccccttcgaggaaaaagctttcgagtaaagcgtcatttttgactcccacaaatcataacggagttgaatactgttggctaacgcaggaagacattgtccggttccttctgaactccattggagtcttctctcccatgcctactttttcaattgaatcgctcaacatcataaatcacgatatgatgactgttagttatcatgatcctgcaatttcttctttggatgccataattcgggcgtatattgagcagagctcagttgcagttgttgatgaagacaaccgattgattggtgaaatctctcccttcactctagcctactgtgatgagaccgttgcagcagcaatcgcgacactttcagctggtgatctcatgacttacatcgactacggtggtcctccagaggacttgatcgagttggtcaagatgaggttacaagaaaagaaacttggggcaatggttgaactaatagatgaagagttttcactgtcttcatcatcatcttctgcttcaagctgttcatcagatgatgaatcangctcaagcaaagttactgtgctaggacgatattcttcagcaagaagatccgaggcgattacttgttatccatggagttcattggtggctgtgatgatccaagctctagcacatcgcgctattccattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37071" stop="35746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36771" g_stop="36044" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E377236" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36771" e_stop="36044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGG</genome_strand>
        <mrna_strand>TAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCANGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCT-ATTCCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335186" ref_strand="+" ref_description="SGN-E335186 [cTOE-1-F12]">
      <seq>ttgttcagcttgttggaagccgatagattacattcttgaaggcgctcagaatctggttataccaattcaaaattctaagagcaccccttcgaggaaaaagctttcgagtaaagcgtcatttttgactcccacaaatcataacggagttgaatactgttggctaacgcaggaagacattgtccggttccttctgaactccattggagtcttctctcccatgcctactttttcaattgaatcgctcaacatcataaatcacgatatgatgactgttagttatcatgatcctgcaatttcttctttggatgccataattcgggcgtatattgagcagagctcagttgcagttgttgatgaagacaaccgattgattggtgaaatctctcccttcactctagcctactgtgatgagaccgttgcagcagcaatcgcgacactttcagctggtgatctcatgacttacatcngactacggtggtcctccagaggacttgatcgagttggtcaagatgaggttacaagaaaagaaacttggggcaatggttgaactaatagatgaagagttttcactgtcttcatcatcatcttctgcttcaagctgttcatcagatgatgaatcaggctcaagcaaagttactgtgctaggacgatattcttcagcaagaagatccgaggcgattacttgttatccatggnagttcattggtggctgtggatgatccaagctctagcacatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37093" stop="35760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36793" g_stop="36060" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E335186" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36793" e_stop="36060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCAGCTTGTTGGAAG-CGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATC-GACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGG-AGTTCATTGGTGGCTGT-GATGATCCAAGCTCTAGCACATCG</genome_strand>
        <mrna_strand>TTGTTCAGCTTGTTGGAAGCCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCNGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGNAGTTCATTGGTGGCTGTGGATGATCCAAGCTCTAGCACATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233073" ref_strand="+" ref_description="SGN-E233073 [cLED-6-B11]">
      <seq>tagattacattcttgaaggcgctcagaatctggttataccaattcaaaattctaagagcaccccttcgaggaaaaagctttcgagtaaagcgtcatttttgactcccacaaatcataacggagttgaatactgttggctaacgcaggaagacattgtccggttccttctgaactccattggagtcttctctcccatgcctactttttcaattgaatcgctcaacatcataaatcacgatatgatgactgttagttatcatgatcctgcaatttcttctttggatgccataattcgggcgtatattgagcagagctcagttgcagttgttgatgaagacaaccgattgattggtgaaatctctcccttcactctagcctactgtgatgagaccgttgcagcagcaatcgcgacactttcagctggtgatctcatgacttacatcgactacggtggtcctccagaggacttgatcgagttggtcaagatgaggttacaagaaaagaaacttggggcaatggttgaactaatagatgaagagttttcactgtcttcatcatcatcttctgcttcaagctgttcatcagatgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="37071" stop="35879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36771" g_stop="36179" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E233073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36771" e_stop="36179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAA</genome_strand>
        <mrna_strand>TAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705130" ref_strand="+" ref_description="SGN-E705130 [FA26BA06]">
      <seq>ccgactaagtcttccgttgtattttcctgttaaagaattttccggccgatctctttctctattttatatcggatttttttctttctctatattatatcggtattctttctgttgaatattcgcatttgcatggcagtaagttttttgaatcgggaggtatctgacctgtgtcttggtaagccggcgttaaagcctattccagctgaagctactgtatcggaggcgttgacattgttgaaaaaatccggcgagactcatgtaagcgtttggagctgtgaccatatcaggaaggttgtagaagaagaagaaggaggcggaggatattctgtttgccgctgtattgggaagatctgtatggtagatgtgatttgcttcctctgtacggaagagaatttggcggatccttctaaggctcttcaaactcctgtggaacagattttgcctaaagggaattccattgtcagacatttagatccaaattctagcttgttggaagcgatagattacattcttgaaggcgctcagaatctggttataccaattcaaaattctaagagcaccccttcgaggaaaaagctttcgagtaaagcgtcatttttgactcccacaaatcataacggagttgaatactgttggctaacgcaggaagacattgtccggttccttctgaactccattggagtcttctctcccatgcctactttttcaattgaatcgctcaacatcataaatcacgatatgatgactgttagttatcatgatcctgcaatttcttctttggatgccataattcgggcgtatattgagcagagctcagttgcagttgttgatgaagacaaccgattgattggtgaaatctctcccttcactctagccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38195" stop="36093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37895" g_stop="37411" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37410" i_stop="36786" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36785" g_stop="36393" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="878" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E705130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37895" e_stop="37411"/>
          <exon e_start="36785" e_stop="36393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAGGTAATTATCAAGATTTTTTTTTTTATAGAATTAGAAATTATATTGGTGTTGTTCCTTTTGCAATTACATTTTTTGATTTCTATTTTGTTTCTGTTTTAATTTTTTTTTTTTTGAACAATTAGTTTTTAGAATGAATTGGTATTTTGAGGTACTGTGTAGGAATACTGCTAAAGGATTTGCTGAAAAGAGAAAAAAAAGCCCTTTTAGCCCTCAAAATCCTTTTTTCATCAGTTAACTTTGTATATTCTGATTTGATTTGATTTTAATCATAGATCTACTTTTTCAGCATCAAATTTTAATGCTCGCTTTTTGGCCTTTCTTGTTTAAGCTTTGTTGTTTATGTGCCACAACCTTTGGCACATGTATGAAATGGTTAATTTTGGTTGTGATGATATTCGTATTTGGCTAGTTTGAGATTAAAGTCATAGATCCCTGAAACTAGTAAGATGATTGATGGGAGTCAAAATGGTGAACACAACTAGTTGTGATAGATGAGATCAAAGTGAGATGTATTAATGTGATTTGAATAATATTGGGTGTTAATTTTAAAGCATTCTTCTTATATGATCTATTTGAAGATTGATTATTGGCAGGTTTCTCATGTGTGTTATCTTTGGTTGTTCAGCTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTA</genome_strand>
        <mrna_strand>CCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737383" ref_strand="+" ref_description="SGN-E737383 [LC09CD07]">
      <seq>cctataaccaccgactatgtcttccgttgtattttcctgttaaagaattttccggccgatctctttctctattttatatcggatttttttctttctctatattatatcggtattctttctgttgaatattcgcatttgcatggcagtaagttttttgaatcgggaggtatctgacctgtgtcttggtaagccggcgttaaagcctattccagctgaagctactgtatcggaggcgttgacattgttgaaaaaatccggcgagactcatgtaagcgtttggagctgtgaccatatcaggaaggttgtagaagaagaagaaggaggcggaggatattctgtttgccgctgtattgggaagatctgtatggtagatgtgatttgcttcctctgtacggaagagaatttggcggatccttctaaggctcttcaaactcctgtggaacagattttgcctaaagggaattccattgtcagacatttagatccaaattctagcttgttggaagcgatagattacattcttgaaggcgctcagaatctggttataccaattcaaaattctaagagcaccccttcgaggaaaaagctttcgagtaaagcgtcatttttgactcccacaaatcataacggagttgaatactgttggctaacgcaggaagacattgtccggttccttctgaactccattggagtcttctctcccatgcctactttttcaattgaatcgctcaacatcataaatcacgatatgatgactgttagttatcatgatcctgcaatttcttctttggatgccataattcgggcgtatattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38205" stop="36164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37905" g_stop="37411" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37410" i_stop="36786" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36785" g_stop="36464" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="817" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E737383" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37905" e_stop="37411"/>
          <exon e_start="36785" e_stop="36464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAGGTAATTATCAAGATTTTTTTTTTTATAGAATTAGAAATTATATTGGTGTTGTTCCTTTTGCAATTACATTTTTTGATTTCTATTTTGTTTCTGTTTTAATTTTTTTTTTTTTGAACAATTAGTTTTTAGAATGAATTGGTATTTTGAGGTACTGTGTAGGAATACTGCTAAAGGATTTGCTGAAAAGAGAAAAAAAAGCCCTTTTAGCCCTCAAAATCCTTTTTTCATCAGTTAACTTTGTATATTCTGATTTGATTTGATTTTAATCATAGATCTACTTTTTCAGCATCAAATTTTAATGCTCGCTTTTTGGCCTTTCTTGTTTAAGCTTTGTTGTTTATGTGCCACAACCTTTGGCACATGTATGAAATGGTTAATTTTGGTTGTGATGATATTCGTATTTGGCTAGTTTGAGATTAAAGTCATAGATCCCTGAAACTAGTAAGATGATTGATGGGAGTCAAAATGGTGAACACAACTAGTTGTGATAGATGAGATCAAAGTGAGATGTATTAATGTGATTTGAATAATATTGGGTGTTAATTTTAAAGCATTCTTCTTATATGATCTATTTGAAGATTGATTATTGGCAGGTTTCTCATGTGTGTTATCTTTGGTTGTTCAGCTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAG</genome_strand>
        <mrna_strand>CCTATAACCACCGACTATGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379556" ref_strand="+" ref_description="SGN-E379556 [TUS-3-L16]">
      <seq>cgactaagtcttccgttgtattttcctgttaaagaattttccggccgatctctttctctattttatatcggattttttttctttctctatattatatcggtattctttctgttgaatattcgcatttgcatggcagtaagttttttgaatcgggaggtatctgacctgtgtcttggtaagccggcgttaaagcctattccagctgaagctactgtatcggaggcgttgacattgttgaaaaaatccggcgagactcatgtaagcgtttggagctgtgaccatatcaggaaggttgtagaagaagaagaaggaggcggaggatattctgtttgccgctgtattgggaagatctgtatggtagatgtgatttgcttcctctgtacggaagagaatttggcggatccttctaaggctcttcaaactcctgtggaacagattttgcctaaagggaattccattgtcagacatttagatccaaattctagcttgttggaagcgatagattacattcttgaaggcgctcagaatctggttataccaattncaaattctaagagcaccccttcgaggaaaaagctttcgagtaaagcgtcatttttgactcccacaaatcataacggagttgaatactgttggctaacgcaggaagacattgtccggttccttctgaactccattggagtcttctctcccatgcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38194" stop="36270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37894" g_stop="37411" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37410" i_stop="36786" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36785" g_stop="36570" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="701" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E379556" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37894" e_stop="37411"/>
          <exon e_start="36785" e_stop="36570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATT-TTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAGGTAATTATCAAGATTTTTTTTTTTATAGAATTAGAAATTATATTGGTGTTGTTCCTTTTGCAATTACATTTTTTGATTTCTATTTTGTTTCTGTTTTAATTTTTTTTTTTTTGAACAATTAGTTTTTAGAATGAATTGGTATTTTGAGGTACTGTGTAGGAATACTGCTAAAGGATTTGCTGAAAAGAGAAAAAAAAGCCCTTTTAGCCCTCAAAATCCTTTTTTCATCAGTTAACTTTGTATATTCTGATTTGATTTGATTTTAATCATAGATCTACTTTTTCAGCATCAAATTTTAATGCTCGCTTTTTGGCCTTTCTTGTTTAAGCTTTGTTGTTTATGTGCCACAACCTTTGGCACATGTATGAAATGGTTAATTTTGGTTGTGATGATATTCGTATTTGGCTAGTTTGAGATTAAAGTCATAGATCCCTGAAACTAGTAAGATGATTGATGGGAGTCAAAATGGTGAACACAACTAGTTGTGATAGATGAGATCAAAGTGAGATGTATTAATGTGATTTGAATAATATTGGGTGTTAATTTTAAAGCATTCTTCTTATATGATCTATTTGAAGATTGATTATTGGCAGGTTTCTCATGTGTGTTATCTTTGGTTGTTCAGCTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTAC</genome_strand>
        <mrna_strand>CGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTNCAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398742" ref_strand="+" ref_description="SGN-E398742 [TUS-45-L10]">
      <seq>cacatatctaacctatcaccaccgactaagtcttccgttgtattttcctgttaaagaattttccggccgatctctttctctattttatatcggatttttttctttctctatattatatcggtattctttctgttgaatattcgcatttgcatggcagtaagttttttgaatcgggaggtatctgacctgtgtcttggtaagccggcgttaaagcctattccagctgaagctactgtatcggaggcgttgacattgttgaaaaaatccggcgagactcatgtaagcgtttggagctgtgaccatatcaggaaggttgtagaagaagaagaaggaggcggaggatattctgtttgccgctgtattgggaagatctgtatggtagatgtgatttgcttcctctgtacggaagagaatttggcggatccttctaaggctcttcaaactcctgtggaacagattttgcctaaagggaattccattgtcagacatttagatccaaattctagcttgttggaagcgatagattacattcttgaaggcgctcaaaatctggttataccaattcaaaattctaaaagcaccccttcgaggaaaaagcttttcgaagtaaagcgtcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38216" stop="36373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37916" g_stop="37411" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37410" i_stop="36786" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36785" g_stop="36673" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="621" r_length="115" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E398742" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37916" e_stop="37411"/>
          <exon e_start="36785" e_stop="36673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAGGTAATTATCAAGATTTTTTTTTTTATAGAATTAGAAATTATATTGGTGTTGTTCCTTTTGCAATTACATTTTTTGATTTCTATTTTGTTTCTGTTTTAATTTTTTTTTTTTTGAACAATTAGTTTTTAGAATGAATTGGTATTTTGAGGTACTGTGTAGGAATACTGCTAAAGGATTTGCTGAAAAGAGAAAAAAAAGCCCTTTTAGCCCTCAAAATCCTTTTTTCATCAGTTAACTTTGTATATTCTGATTTGATTTGATTTTAATCATAGATCTACTTTTTCAGCATCAAATTTTAATGCTCGCTTTTTGGCCTTTCTTGTTTAAGCTTTGTTGTTTATGTGCCACAACCTTTGGCACATGTATGAAATGGTTAATTTTGGTTGTGATGATATTCGTATTTGGCTAGTTTGAGATTAAAGTCATAGATCCCTGAAACTAGTAAGATGATTGATGGGAGTCAAAATGGTGAACACAACTAGTTGTGATAGATGAGATCAAAGTGAGATGTATTAATGTGATTTGAATAATATTGGGTGTTAATTTTAAAGCATTCTTCTTATATGATCTATTTGAAGATTGATTATTGGCAGGTTTCTCATGTGTGTTATCTTTGGTTGTTCAGCTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGC-TTTCG-AGTAAAGCGTCATTTT</genome_strand>
        <mrna_strand>CACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAAAATCTGGTTATACCAATTCAAAATTCTAAAAGCACCCCTTCGAGGAAAAAGCTTTTCGAAGTAAAGCGTCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231996" ref_strand="+" ref_description="SGN-E231996 [cLED-7-C6]">
      <seq>acatatctaacctatcaccaccgactaagtcttccgttgtattttcctgttaaagaattttccggccgatctctttctctattttatatcggatttttttctttctctatattatatcggtattctttctgttgaatattcgcatttgcatggcagtaagttttttgaatcgggaggtatctgacctgtgtcttggtaagccggcgttaaagcctattccagctgaagctactgtatcggaggcgttgacattgttgaaaaaatccggcgagactcatgtaagcgtttggagctgtgaccatatcaggaaggttgtagaagaagaagaaggaggcggaggatattctgtttgccgctgtattgggaagatctgtatggtagatgtgatttgcttcctctgtacggaagagaatttggcggatccttctaaggctcttcaaactcctgtggaacagattttgcctaaagggaattccattgtcagacatttagatccaaattctagcttgttggaagcgatagattacattcttgaaggcgctcagaatctggttataccaattcaaaattctaagagcacccctttgaggaaaaagctttcgagtaaagcgtcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38215" stop="36374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37915" g_stop="37411" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37410" i_stop="36786" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36785" g_stop="36674" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="617" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E231996" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37915" e_stop="37411"/>
          <exon e_start="36785" e_stop="36674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAGGTAATTATCAAGATTTTTTTTTTTATAGAATTAGAAATTATATTGGTGTTGTTCCTTTTGCAATTACATTTTTTGATTTCTATTTTGTTTCTGTTTTAATTTTTTTTTTTTTGAACAATTAGTTTTTAGAATGAATTGGTATTTTGAGGTACTGTGTAGGAATACTGCTAAAGGATTTGCTGAAAAGAGAAAAAAAAGCCCTTTTAGCCCTCAAAATCCTTTTTTCATCAGTTAACTTTGTATATTCTGATTTGATTTGATTTTAATCATAGATCTACTTTTTCAGCATCAAATTTTAATGCTCGCTTTTTGGCCTTTCTTGTTTAAGCTTTGTTGTTTATGTGCCACAACCTTTGGCACATGTATGAAATGGTTAATTTTGGTTGTGATGATATTCGTATTTGGCTAGTTTGAGATTAAAGTCATAGATCCCTGAAACTAGTAAGATGATTGATGGGAGTCAAAATGGTGAACACAACTAGTTGTGATAGATGAGATCAAAGTGAGATGTATTAATGTGATTTGAATAATATTGGGTGTTAATTTTAAAGCATTCTTCTTATATGATCTATTTGAAGATTGATTATTGGCAGGTTTCTCATGTGTGTTATCTTTGGTTGTTCAGCTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTT</genome_strand>
        <mrna_strand>ACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTTGAGGAAAAAGCTTTCGAGTAAAGCGTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208124" ref_strand="+" ref_description="SGN-E208124 [cLEC-34-J4]">
      <seq>cgactaagtcttccgttgtattttcctgttaaagaattttccggccgatctctttctctattttatatcggattttttttctttctctatattatatcggtattctttctgttgaatattcgcatttgcatggcagtaagttttttgaatcgggaggtatctgacctgtgtcttggtaagccggcgttaaagcctattccagctgaagctactgtatcggaggcgttgacattgttgaaaaaatccggcgagactcatgtaagcgtttggagctgtgaccatatcaggaaggttgtagaagaagaagaaggaggcggaggatattctgtttgccgctgtattgggaagatctgtatggtagatgtgatttgcttcctctgtacggaagagaatttggcggatccttctaaagctcttcaaactcctgtggaacagattttgcctaaagggaattccattgtcagacatttagatccaaattctagcttgttggaagcgatagattacattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38194" stop="36457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37894" g_stop="37411" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37410" i_stop="36786" i_length="625">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36785" g_stop="36757" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="514" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E208124" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37894" e_stop="37411"/>
          <exon e_start="36785" e_stop="36757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATT-TTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAGGTAATTATCAAGATTTTTTTTTTTATAGAATTAGAAATTATATTGGTGTTGTTCCTTTTGCAATTACATTTTTTGATTTCTATTTTGTTTCTGTTTTAATTTTTTTTTTTTTGAACAATTAGTTTTTAGAATGAATTGGTATTTTGAGGTACTGTGTAGGAATACTGCTAAAGGATTTGCTGAAAAGAGAAAAAAAAGCCCTTTTAGCCCTCAAAATCCTTTTTTCATCAGTTAACTTTGTATATTCTGATTTGATTTGATTTTAATCATAGATCTACTTTTTCAGCATCAAATTTTAATGCTCGCTTTTTGGCCTTTCTTGTTTAAGCTTTGTTGTTTATGTGCCACAACCTTTGGCACATGTATGAAATGGTTAATTTTGGTTGTGATGATATTCGTATTTGGCTAGTTTGAGATTAAAGTCATAGATCCCTGAAACTAGTAAGATGATTGATGGGAGTCAAAATGGTGAACACAACTAGTTGTGATAGATGAGATCAAAGTGAGATGTATTAATGTGATTTGAATAATATTGGGTGTTAATTTTAAAGCATTCTTCTTATATGATCTATTTGAAGATTGATTATTGGCAGGTTTCTCATGTGTGTTATCTTTGGTTGTTCAGCTTGTTGGAAGCGATAGATTACATTCTTG</genome_strand>
        <mrna_strand>CGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAAGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTTGGAAGCGATAGATTACATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237851" ref_strand="+" ref_description="SGN-E237851 [cLED-18-N17]">
      <seq>aacctatcaccaccgactaagtcttccgttgtattttcctgttaaagaattttccggccgatctctttctctattttatatcggatttttttctttctctatattatatcggtattctttctgttgaatattcgcatttgcatggcagtaagttttttgaatcgggaggtatctgacctgtgtcttggtaagccggcgttaaagcctattccagctgaagctactgtatcggaggcgttgacattgttgaaaaaatccggcgagactcatgtaagcgtttggagctgtgaccatatcaggaaggttgtagaagaagaagaaggaggcggaggatattctgtttgccgctgtattgggaagatctgtatggtagatgtgatttgcttcctctgtacggaagagaatttggcggatccttctaaggctcttcaaactcctgtggaacagattttgcctaaagggaattccattgtcagacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38207" stop="37128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37907" g_stop="37428" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E237851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37907" e_stop="37428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACAT</genome_strand>
        <mrna_strand>AACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396738" ref_strand="+" ref_description="SGN-E396738 [TUS-43-N9]">
      <seq>ccgactaagtcttccgttgtattttcctgttaaagaattttccggccgatctctttctctattttatatcggattttttttctttctctatattatatcggtattctttctgttgaatattcgcatttgcatggcagtaagttttttgaatcgggaggtatctgacctgtgtcttggtaagccggcgttaaagcctattccagctgaagctactgtatcggaggcgttgacattgttgaaaaaatccggcgagactcatgtaagcgtttggagctgtgaccatatcaggaaggttgtataagaagaagaaggaggcggaggatattctgtttgccgctgtattgggaagatctgtatggtagatgtgatttgcttcctctgtacggaagagaatttggcggatccttcaaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38195" stop="37183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37895" g_stop="37483" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E396738" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37895" e_stop="37483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGAT-TTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGC</genome_strand>
        <mrna_strand>CCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTATAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCAAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397621" ref_strand="+" ref_description="SGN-E397621 [TUS-46-K9]">
      <seq>cacatatctaacctatcaccaccgactaagtcttccgttgtattttcctgttaaagaattttccggccgatctctttctctattttatatcggatttttttctttctctatattatatcggtattctttctgttgaatattcgcatttgcatggcagtaagttttttgaatcgggaggtatctgacctgtgtcttggtaagccggcgttaaagcctattccagctgaagctactgtatcggaggcgttgaccttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38216" stop="37359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37916" g_stop="37659" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E397621" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37916" e_stop="37659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTG</genome_strand>
        <mrna_strand>CACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACCTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239977" ref_strand="+" ref_description="SGN-E239977 [cLED-29-L23]">
      <seq>aacctatcaccaccgactaagtcttccgttgtattttcctgttaaagaattttccggccgatctctttctctattttatatcggatttttttctttctctatattatatcgggattctttctgttgaatattcgcatttgcatggcagtaagttttttgaatcgggaggtatctgacctgtgtcttggtaagccggcgttaaagcctattccagctgaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38207" stop="37385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37907" g_stop="37685" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E239977" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37907" e_stop="37685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTA</genome_strand>
        <mrna_strand>AACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGGATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397622" ref_strand="+" ref_description="SGN-E397622 [TUS-46-K11]">
      <seq>cacttttctaacctatcaccaccgactaagtcttccgttgtattttcctgttaaagaattttccggccgatctctttctctattttatatcggatttttttctttctctatattatatcggtattctttctgttgaatattcgcatttgcatggcagtaagttttttgaatcgggaggtatctgacctgtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="38216" stop="37424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37916" g_stop="37724" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E397622" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37916" e_stop="37724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTC</genome_strand>
        <mrna_strand>CACTTTTCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245914" ref_strand="+" ref_description="SGN-E245914 [cLEF-51-A23]">
      <seq>ggtatcaaagattcaaaactactgacatgcctcgatttgaaagtaaaaatgacgatcggagaagatcgtctccgtattcttacaaagatcggaagtcgcatcatcacgagagccagtctaatggatcgcagcactttagagtgaaggctaattattctggagatcaataccgtcacggtcaccgtcagcgtgaggactacaaggataaaagcaccaggagccacagaagaaatgacgacaatgaggattacagccgttccaggaaccataaatttgacaggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="49767" stop="52444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50067" g_stop="50176" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50177" i_stop="51973" i_length="1797">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51974" g_stop="52143" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="280" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E245914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>280</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50067" e_stop="50176"/>
          <exon e_start="51974" e_stop="52143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATCAAAGATTCAAAACTACTGACATGCCTCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAGGTCAATTTTTCTCTTAAAATTTTCTGACCATATCATAATTTGATTCAAATTGCTCATAATTTGCTTGAATAATTTGATAGAATCATCACAAAATCTAGTAATTTGACCTAACGAAAGAAGTGACGACAAATTTCTATTGTACTGGTGATCTTGGACGTGAACTAAATCAATTTAATCTGAGAAAGAGTGCTATATTTTTATTTTATTCCAAGCAACAGTTAGTTGGATGAAGATTACGACTTGAAGCTCCAGTAGGACAATTTTTTTGTGTTGTGTAGAGATTAGGTGGGTACATAACTCTAGCAAAACCGGTAACCTGAATGGAATAAGTGTTGGTGGTTTATGGATATCAGGTTATTGAGTTACCAAATTTGTAGGATGAGAAATGGTTGTGTGCGAATGGAATTTTTATGTTACATTGCCACATGGTTATGGCTGAAGAGAAAATGCAACCCCAAATTGATAGAAATTCTCATTTCTAAGAACTTCGAGAATGAAAATTAAAATGTATTAGCCCTGACAACGTTGGAGTAGAAAGTATTAGCCAAGGGTGTTAGAGTTACCTTGGAGTAGTAATCGACCTTGGTGTCTATCATGGGAGAGTAATGTTGACAAAAAGAAGTAGGTGGTTTATTCCAATACTTCTTAAGTTTTGGTGGAAAAAGAGCTGCCCGGTATATGTGCTAGTGAGAAATTGAAGGTACTCGGTGGATTAGTTGAGCTACAGGTATGTTGACTAGTGCATCATCATACTAAAGGTAAAAGGAAGTACTTAAAAATTATGTCCCCCATGTAGCAATTCCATACTTTTTATCTACTATGCCAATTTAAAGTTGCTAAACATATCCTGGAACCATGTAGAATGGTGTTGGATATATTATGGAACAATGGTTTTAGATACTAAGTCGCTTGGACTATCTACTTTAGGTGCCGCACCCGTGTCGACACAACATGGGTGATTGGGTGTGGGTGTGAGATTCATGTCCGATTTGGCCAACCGATTTTGAGTATTTTGACCAAAATCGATGGGAATTTGGATAGTTTTAATGATTTCTATAATCAATACAAAAGCTAAGGCAAAATTGAAGAAAATGGAATACCTTTTATATAGAAATTTCTATGTTACTCTTTTTTCCTTTAATCTCCTTCCAAGATTTTCCTCAAGTTCTCCACATAATATCTAATTTATAACTCTATTTTTTAGATATTTCAATTACTTTTAGGCGAATCCCGCACCTGGATCCATATTCCCAAATCTTAAAAATTAGATCATGAAGGATCGGACCTCTAGATTCGCACCCGCATCGGACACCCGCACCTGCAGTGGCAGAGTCGGGATTTTCAATAAGGGGGTTCAAAATTCATAGAAATAGACTCGGAATAGCCGAAGAGGGTTCAACATCTACTATATATACATAAAATATTATTTTAATCATGTATAAATATTATAATTTTCCGTCGAAGGGGGTTGTACCAAGGTGGATCCGCCACTGTGCACCTGAGTCCGAGCAACTTAGGTTGGACATATAATGGAACTTTAGTATTTGATGTTTAATAATTAAAATCTGCATGTTGTATTCATGCAATTCGATTTAATTTCAAGCACTCTTACTTAAAATAACCTGTCTCTTTTTTGTTTCCTACATTGTCAACTCCATAGAAGAAGCTTTTGATTGGGAATTTTGATCAGTTAGGCCAATTTTAGTTTGTATGTCATCTCCTGAACTCGTGAGCATATATTTCTTTGCTTGCTGCTATGGCCTAATTTCAGAATATCGTCTAATTGAGCTTCTCCAGAGCCAGTCTAATGGATCGCAGCACTTTAGAGTGAAGGCTAATTATTCTGGAGATCAATACCGTCACGGTCACCGTCAGCGTGAGGACTACAAGGATAAAAGCACCAGGAGCCACAGAAGAAATGACGACAATGAGGATTACAGCCGTTCCAGGAACCATAAATTTGACAG</genome_strand>
        <mrna_strand>GGTATCAAAGATTCAAAACTACTGACATGCCTCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGTCTAATGGATCGCAGCACTTTAGAGTGAAGGCTAATTATTCTGGAGATCAATACCGTCACGGTCACCGTCAGCGTGAGGACTACAAGGATAAAAGCACCAGGAGCCACAGAAGAAATGACGACAATGAGGATTACAGCCGTTCCAGGAACCATAAATTTGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728501" ref_strand="+" ref_description="SGN-E728501 [LA18AB09]">
      <seq>caaagattcaaaactactgacatgcctcgatttgaaagtaaaaatgacgatcggagaagatcgtctccgtattcttacaaagatcggaagtcgcatcatcacgagagccagtctaatggatcgcagcactttagagtgaaggctaattattctggagatcaataccgtcacggtcaccgtcagcgtgaggactacaaggataaaagcaccaggagccacagaagaaatgacgacaatgaggattacagccgttccaggaaccataaatttgacaggcgccaagatcgtggaggtagatataagggtgaaacatgtggatcccgttctaggtcaaaggatcggtctcatgaagaagctagatcaagatcaagttctcctttacccccaaagagcagtgggcaggtgaaatctgaacaggagtgtgtattagctcaggcaaggctgcacatagctatgcagaaatggcttttgaagctagtggtatgactattcctggtacagagatagggcctgttgtgactgctgaaattccaaccaaggtgattacccctcaagaattatttgatgacgtagagtatgaagaaattttggaagacatgaagaaggaggccaaaaatttggtgacttgattgatgttgttattcctcggccagaacctgatcaaaaaatggtgatggttttgggaaggtatttctcgagtactctgacactatcgattgcacgaaagcaaaggcagcacttggtggcaggaaatttggagggaatactgctgttgccattttttatcctgaagaacaatgctacaagaaggattatgcctcttaattttctgaatatcttccatgtttatagtcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="49772" stop="56518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50072" g_stop="50176" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50177" i_stop="51973" i_length="1797">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51974" g_stop="52143" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="275" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="53188" i_length="1045">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53189" g_stop="53305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="392" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53306" i_stop="54142" i_length="837">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54143" g_stop="54209" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="459" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54210" i_stop="54540" i_length="331">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54541" g_stop="54620" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="539" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54621" i_stop="54700" i_length="80">
            <donor d_prob="0.709" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54701" g_stop="54781" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="620" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="54782" i_stop="55388" i_length="607">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55389" g_stop="55455" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="687" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55456" i_stop="56047" i_length="592">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="56048" g_stop="56218" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="858" r_length="171" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E728501" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50072" e_stop="50176"/>
          <exon e_start="51974" e_stop="52143"/>
          <exon e_start="53189" e_stop="53305"/>
          <exon e_start="54143" e_stop="54209"/>
          <exon e_start="54541" e_stop="54620"/>
          <exon e_start="54701" e_stop="54781"/>
          <exon e_start="55389" e_stop="55455"/>
          <exon e_start="56048" e_stop="56218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATTCAAAACTACTGACATGCCTCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAGGTCAATTTTTCTCTTAAAATTTTCTGACCATATCATAATTTGATTCAAATTGCTCATAATTTGCTTGAATAATTTGATAGAATCATCACAAAATCTAGTAATTTGACCTAACGAAAGAAGTGACGACAAATTTCTATTGTACTGGTGATCTTGGACGTGAACTAAATCAATTTAATCTGAGAAAGAGTGCTATATTTTTATTTTATTCCAAGCAACAGTTAGTTGGATGAAGATTACGACTTGAAGCTCCAGTAGGACAATTTTTTTGTGTTGTGTAGAGATTAGGTGGGTACATAACTCTAGCAAAACCGGTAACCTGAATGGAATAAGTGTTGGTGGTTTATGGATATCAGGTTATTGAGTTACCAAATTTGTAGGATGAGAAATGGTTGTGTGCGAATGGAATTTTTATGTTACATTGCCACATGGTTATGGCTGAAGAGAAAATGCAACCCCAAATTGATAGAAATTCTCATTTCTAAGAACTTCGAGAATGAAAATTAAAATGTATTAGCCCTGACAACGTTGGAGTAGAAAGTATTAGCCAAGGGTGTTAGAGTTACCTTGGAGTAGTAATCGACCTTGGTGTCTATCATGGGAGAGTAATGTTGACAAAAAGAAGTAGGTGGTTTATTCCAATACTTCTTAAGTTTTGGTGGAAAAAGAGCTGCCCGGTATATGTGCTAGTGAGAAATTGAAGGTACTCGGTGGATTAGTTGAGCTACAGGTATGTTGACTAGTGCATCATCATACTAAAGGTAAAAGGAAGTACTTAAAAATTATGTCCCCCATGTAGCAATTCCATACTTTTTATCTACTATGCCAATTTAAAGTTGCTAAACATATCCTGGAACCATGTAGAATGGTGTTGGATATATTATGGAACAATGGTTTTAGATACTAAGTCGCTTGGACTATCTACTTTAGGTGCCGCACCCGTGTCGACACAACATGGGTGATTGGGTGTGGGTGTGAGATTCATGTCCGATTTGGCCAACCGATTTTGAGTATTTTGACCAAAATCGATGGGAATTTGGATAGTTTTAATGATTTCTATAATCAATACAAAAGCTAAGGCAAAATTGAAGAAAATGGAATACCTTTTATATAGAAATTTCTATGTTACTCTTTTTTCCTTTAATCTCCTTCCAAGATTTTCCTCAAGTTCTCCACATAATATCTAATTTATAACTCTATTTTTTAGATATTTCAATTACTTTTAGGCGAATCCCGCACCTGGATCCATATTCCCAAATCTTAAAAATTAGATCATGAAGGATCGGACCTCTAGATTCGCACCCGCATCGGACACCCGCACCTGCAGTGGCAGAGTCGGGATTTTCAATAAGGGGGTTCAAAATTCATAGAAATAGACTCGGAATAGCCGAAGAGGGTTCAACATCTACTATATATACATAAAATATTATTTTAATCATGTATAAATATTATAATTTTCCGTCGAAGGGGGTTGTACCAAGGTGGATCCGCCACTGTGCACCTGAGTCCGAGCAACTTAGGTTGGACATATAATGGAACTTTAGTATTTGATGTTTAATAATTAAAATCTGCATGTTGTATTCATGCAATTCGATTTAATTTCAAGCACTCTTACTTAAAATAACCTGTCTCTTTTTTGTTTCCTACATTGTCAACTCCATAGAAGAAGCTTTTGATTGGGAATTTTGATCAGTTAGGCCAATTTTAGTTTGTATGTCATCTCCTGAACTCGTGAGCATATATTTCTTTGCTTGCTGCTATGGCCTAATTTCAGAATATCGTCTAATTGAGCTTCTCCAGAGCCAGTCTAATGGATCGCAGCACTTTAGAGTGAAGGCTAATTATTCTGGAGATCAATACCGTCACGGTCACCGTCAGCGTGAGGACTACAAGGATAAAAGCACCAGGAGCCACAGAAGAAATGACGACAATGAGGATTACAGCCGTTCCAGGAACCATAAATTTGACAGGTCATTTTAGGAAAAGTGTTTGTATGCATAAGCTTTTAGATCTTTCCATTTGTTATGATGGTTCTTTTGTGGGGTAGGGGGTGAGTCTATTTTGAATTGATAGGTCATACTTCCCTCATGGTTTATTATGTTCTGTCTAATTTCCAAATGTTATAGCTACATTCAATTTGAAGAAATAAATAGTTAGAGGATAGTTAATATATAGGATTTGTTAACACAAACAGTTCCATGAGGAAAATCAAGGCACTCGGCTCTCAGCTGGAAGTCTTTGTACAGTTGTAATTTTGGCCAACATAAGACAATTCTTGCTGTTTCAACTATAAGAAGAATATTTCTTTGATTGGTTTCCTTTATTTTATACATTTTTTTTTGATAAGTAAAGCTTTCTATCAATGGGCAACATTAGCACTAAGGCTGTTCTGGACACTACAGTAGGATGTCCCAAGTACAAAATTTGTTCAACTTTGTAATAAACTAAACGGAATCTGCCATAGAGTGCTCTTCATATGCATATTATACATTCACTGAAAAGCTAACTAACTAAGCATCTCTATTTGAGGACAAAGAGTGCAGTTCTTCTGTTGAAACATCTTTGATTCCTTTCTTTCTGCACCACCTAACAGACAGATGCAGGAATGGTTCTCCATAATCTGCTCAGCGCCCAAGGAGTTCCTTGACATTCTTTGGCATCACATATCTTAAACCCAAAATATGTTCAAAATAAGGTTCCACAACTGGATAGGTGGGAAAAGTGCAAATAGAAAGAAAAAAAGACGATATTTATCATTTCATATTTATCTTTGTACTTCTCACAGCAACAGATTCTTGGCAGGTTATTAGATATTAAAGAATTAAAGAAAAACACACAGCCAAATTATACATATAAACCTTTTGTTTCATGATGGATTATATATATAGCTTACATGATTGTTTTACGAGTACAAGTAACACACTGGATGAATGAATATTTTTTTTTGTGAGAATGGTAACATTAAAATGATTATCATTTTTATTTGGCCATTTTGTTATTATTGTGATTTTATAGGCGCCAAGATCGTGGAGGTAGATATAAGGGTGAAACATGTGGATCCCGTTCTAGGTCAAAGGATCGGTCTCATGAAGAAGCTAGATCAAGATCAAGTTCTCCTTTACCCCCAAAGAGGTTTCCTAATAATTTTTTTAACAATATGAATTTCCGAATTGATAACTCTTTATTCTTTAATACGCTTTACTCCCAGGTTTTCTTTTCACAAATTTTGGCCTGCAGTAATTTAGTCCGGATTTCATCTCCTAAACTCTTTTTTTCTATGAAATATTGCTCTTGGAATTTCCTCTAGGTCTTGCATTACCTCTTTGTTTGTGTTTTAGTAGAATGAATTTATAGTGGTTTCTTTGTCGTACATCTATTTCTGTTTGGCATCTGAAGCAATCATTTATAGTAACAAATCAATTTTTCTAAACTGAACTCTTCTGATTGTTTACTTTTGTGTTCAAACATCATCCGGGTCTATACTGTACATTGCCAGATTACTATGTTTTTGATGTTCATGTATGAGTGATGACCTTCCTGTGAGATGAAATGTGGAAGTACATTATGCGACCCAAGAAATGTGTGTCTTCAGCCAATTTGGATAGTCTGAGATGTTTTATCAATTTTGTCAATCTTTGGGAACAGTGTACCAACTGATAATTCTGAATCAAATTTTGTTTATTTGCTCAGTAAAGAGTCTTGTGCTTTTAGAAACAAATGTCTTGCATGCTCACTTCGTCAGTCTCAAAAAGTAGAATTTGTAAACCGCCTTGAGCTTAACAATGTTCAGCAGCCAAGTAAACTTTTGAATGATGATTAACTTCTTCCCATATACTGATTATATCTTCCATATGTTATTTCGATGAAGGGGTGTGTGGTTTCTGGAACCACACTTGTGGTTCTGTATTTAACCTCTCCCTGGTAATTTACTGTGCTCTTTTATAACTTTTTTCCAATCATGTTTAACAGCAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAGGTTTGAATACTTTCTACAGTATTAAATTATTATTCTAAATACTGCCTTTGTCCCAAAAGTTTCGACATTTTTCACTTTTTGAGCTTTGAGCTAAAGTGAACTTTAACTAACATTTTATAATATGTTCACGTGCAGTTTGATATGTGCGAATTGTAATTGTTGTACTTATTGTGAAACTTCTAAACTCTAATTTTAATTCAATATAATAAATAAATTGATCTGATCTAACTCCTAAAATTGGTCAAACTGACCTCAATAAGCTAAAAGTGATTGGGACACTGTGCATTTTCCCTTAATTTTGAATGCTGAAGATTACATTGCTTGCTTGCAGAAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAGGTCTTATGCTTAACCGATAATGACAAGGTAAAATATTGTAGTAATGCTAACGAGTTAGTCATTCTCTGGATGTTTTGAAGGTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTGGTAACTGCAGCTTCTCATTCATTAAAATATCTTCTGTTATCTCTTTTTTGTTTTATGATATGTTCTTTTGTTTCCATCTGTTTCTCATGTTCACATAGAAATTGTTTCTATTAAAAAAAGATGATTGAAAATGAGACACTTTCAAATTGATTTATAGTATGATGGTTGATTGCTCACCTTCATAATTGGATGAACCAATGATTTAAGACTTAAATGAAGAAGAGTTTAAGGGAAAAAGGTAACTGGATTTATAATAGTTTTCAGTTCTATGGGCGAAACATTTTTGAATTGATGATAAAAGATTGGGTACCTTTGCGGAACAATATACTTTCAACTGTTCTTGCTTGAACTTTCAGCCACGAATTTTGTCTCGCAAGCTGCTGCTCTATAATGTCGATTTCACTCATAGGACTACCCCTCATAAGTCTCTGCTACTTTCATTGACGTGTTCCCTATTTATGTGGATTCTCGTCTTTCAGTTTATTAATATTTCCTGATATATTGTACATCCATTTCTATTTCGGGATTTCCTTTTATATGTGCTACTCAATCTGTACAATTAAGTATTTGATAAGTCAGTATTGGATTTCCTTTGGCTGAATTATAGGTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAGGTAATAATGTTGTCACTTTTACGTGTCCGAGCTTTAAAAATTAATTCGATTTTGTTATGCTGAGCAATTGTTGTATCTGTGCTGTGTGTTCTGCAAATATATTTTATTGTTTAAATAATTTGCTGCCATTGAAAGTCCATGGTCACTTCTTGGTTGACATTGGCAAAATAAAGTGCTCTGTTACTACAAGTTATCGCTTATTTTCCTTTTTACTGTTTGACTCTAGATTTTGAGATCATCTTAGAATGTACTGTTTAGGCAATTTTTGAATGAAGAAGTGATGCATAAGCATTTTTATTTTTTTCTTTCCTCATCTGTCTCTCATATGTATTAATCCTCAATCTGCTGCACAGAGAATTGAAACGACTCATTATTTAATCCTCATAAAAAATGCACACAGAATGTAGCATCACAATCAATTGATCATTTTGCCAGTAATGTACATCTTGATAGTTCACTTCAACCCTGCATGGGTGTTATATATAGCCATATTTCAACAGTCAGGATAATACGCAACAATTATAGTAGTCTTTTTCGATCTTGAATCCCCCCCCTCTCCTTCTTTCAGATGGTTTTGTGTTTCAAACTGCAGGTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGT</genome_strand>
        <mrna_strand>CAAAGATTCAAAACTACTGACATGCCTCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGTCTAATGGATCGCAGCACTTTAGAGTGAAGGCTAATTATTCTGGAGATCAATACCGTCACGGTCACCGTCAGCGTGAGGACTACAAGGATAAAAGCACCAGGAGCCACAGAAGAAATGACGACAATGAGGATTACAGCCGTTCCAGGAACCATAAATTTGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCAAGATCGTGGAGGTAGATATAAGGGTGAAACATGTGGATCCCGTTCTAGGTCAAAGGATCGGTCTCATGAAGAAGCTAGATCAAGATCAAGTTCTCCTTTACCCCCAAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAG...........................................................................................................................................................................................................................................................................................................................................AAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAG................................................................................GTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGAACAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336251" ref_strand="+" ref_description="SGN-E336251 [cTOE-10-D16]">
      <seq>tcgatttgaaagtaaaaatgacgatcggagaagatcgtctccgtattcttacaaagatcggaagtcgcatcatcacgagagccagtctaatggatcgcagcactttagagtgaaggctaattattctggagatcaataccgtcacggtcaccgtcagcgtgaggactacaaggataaaagcaccaggagccacagaagaaatgacgacaatgaggattacagccgttccaggaaccataaatttgacaggcgccaagatcgtggaggtagatataagggtgaaacatgtggatcccgttctaggtcaaaggatcggtctcatgaagaagctagatcaagatcaagttctcctttacccccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="49798" stop="53603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50098" g_stop="50176" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50177" i_stop="51973" i_length="1797">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51974" g_stop="52143" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="249" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52144" i_stop="53188" i_length="1045">
            <donor d_prob="0.826" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53189" g_stop="53303" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="364" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E336251" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50098" e_stop="50176"/>
          <exon e_start="51974" e_stop="52143"/>
          <exon e_start="53189" e_stop="53303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAGGTCAATTTTTCTCTTAAAATTTTCTGACCATATCATAATTTGATTCAAATTGCTCATAATTTGCTTGAATAATTTGATAGAATCATCACAAAATCTAGTAATTTGACCTAACGAAAGAAGTGACGACAAATTTCTATTGTACTGGTGATCTTGGACGTGAACTAAATCAATTTAATCTGAGAAAGAGTGCTATATTTTTATTTTATTCCAAGCAACAGTTAGTTGGATGAAGATTACGACTTGAAGCTCCAGTAGGACAATTTTTTTGTGTTGTGTAGAGATTAGGTGGGTACATAACTCTAGCAAAACCGGTAACCTGAATGGAATAAGTGTTGGTGGTTTATGGATATCAGGTTATTGAGTTACCAAATTTGTAGGATGAGAAATGGTTGTGTGCGAATGGAATTTTTATGTTACATTGCCACATGGTTATGGCTGAAGAGAAAATGCAACCCCAAATTGATAGAAATTCTCATTTCTAAGAACTTCGAGAATGAAAATTAAAATGTATTAGCCCTGACAACGTTGGAGTAGAAAGTATTAGCCAAGGGTGTTAGAGTTACCTTGGAGTAGTAATCGACCTTGGTGTCTATCATGGGAGAGTAATGTTGACAAAAAGAAGTAGGTGGTTTATTCCAATACTTCTTAAGTTTTGGTGGAAAAAGAGCTGCCCGGTATATGTGCTAGTGAGAAATTGAAGGTACTCGGTGGATTAGTTGAGCTACAGGTATGTTGACTAGTGCATCATCATACTAAAGGTAAAAGGAAGTACTTAAAAATTATGTCCCCCATGTAGCAATTCCATACTTTTTATCTACTATGCCAATTTAAAGTTGCTAAACATATCCTGGAACCATGTAGAATGGTGTTGGATATATTATGGAACAATGGTTTTAGATACTAAGTCGCTTGGACTATCTACTTTAGGTGCCGCACCCGTGTCGACACAACATGGGTGATTGGGTGTGGGTGTGAGATTCATGTCCGATTTGGCCAACCGATTTTGAGTATTTTGACCAAAATCGATGGGAATTTGGATAGTTTTAATGATTTCTATAATCAATACAAAAGCTAAGGCAAAATTGAAGAAAATGGAATACCTTTTATATAGAAATTTCTATGTTACTCTTTTTTCCTTTAATCTCCTTCCAAGATTTTCCTCAAGTTCTCCACATAATATCTAATTTATAACTCTATTTTTTAGATATTTCAATTACTTTTAGGCGAATCCCGCACCTGGATCCATATTCCCAAATCTTAAAAATTAGATCATGAAGGATCGGACCTCTAGATTCGCACCCGCATCGGACACCCGCACCTGCAGTGGCAGAGTCGGGATTTTCAATAAGGGGGTTCAAAATTCATAGAAATAGACTCGGAATAGCCGAAGAGGGTTCAACATCTACTATATATACATAAAATATTATTTTAATCATGTATAAATATTATAATTTTCCGTCGAAGGGGGTTGTACCAAGGTGGATCCGCCACTGTGCACCTGAGTCCGAGCAACTTAGGTTGGACATATAATGGAACTTTAGTATTTGATGTTTAATAATTAAAATCTGCATGTTGTATTCATGCAATTCGATTTAATTTCAAGCACTCTTACTTAAAATAACCTGTCTCTTTTTTGTTTCCTACATTGTCAACTCCATAGAAGAAGCTTTTGATTGGGAATTTTGATCAGTTAGGCCAATTTTAGTTTGTATGTCATCTCCTGAACTCGTGAGCATATATTTCTTTGCTTGCTGCTATGGCCTAATTTCAGAATATCGTCTAATTGAGCTTCTCCAGAGCCAGTCTAATGGATCGCAGCACTTTAGAGTGAAGGCTAATTATTCTGGAGATCAATACCGTCACGGTCACCGTCAGCGTGAGGACTACAAGGATAAAAGCACCAGGAGCCACAGAAGAAATGACGACAATGAGGATTACAGCCGTTCCAGGAACCATAAATTTGACAGGTCATTTTAGGAAAAGTGTTTGTATGCATAAGCTTTTAGATCTTTCCATTTGTTATGATGGTTCTTTTGTGGGGTAGGGGGTGAGTCTATTTTGAATTGATAGGTCATACTTCCCTCATGGTTTATTATGTTCTGTCTAATTTCCAAATGTTATAGCTACATTCAATTTGAAGAAATAAATAGTTAGAGGATAGTTAATATATAGGATTTGTTAACACAAACAGTTCCATGAGGAAAATCAAGGCACTCGGCTCTCAGCTGGAAGTCTTTGTACAGTTGTAATTTTGGCCAACATAAGACAATTCTTGCTGTTTCAACTATAAGAAGAATATTTCTTTGATTGGTTTCCTTTATTTTATACATTTTTTTTTGATAAGTAAAGCTTTCTATCAATGGGCAACATTAGCACTAAGGCTGTTCTGGACACTACAGTAGGATGTCCCAAGTACAAAATTTGTTCAACTTTGTAATAAACTAAACGGAATCTGCCATAGAGTGCTCTTCATATGCATATTATACATTCACTGAAAAGCTAACTAACTAAGCATCTCTATTTGAGGACAAAGAGTGCAGTTCTTCTGTTGAAACATCTTTGATTCCTTTCTTTCTGCACCACCTAACAGACAGATGCAGGAATGGTTCTCCATAATCTGCTCAGCGCCCAAGGAGTTCCTTGACATTCTTTGGCATCACATATCTTAAACCCAAAATATGTTCAAAATAAGGTTCCACAACTGGATAGGTGGGAAAAGTGCAAATAGAAAGAAAAAAAGACGATATTTATCATTTCATATTTATCTTTGTACTTCTCACAGCAACAGATTCTTGGCAGGTTATTAGATATTAAAGAATTAAAGAAAAACACACAGCCAAATTATACATATAAACCTTTTGTTTCATGATGGATTATATATATAGCTTACATGATTGTTTTACGAGTACAAGTAACACACTGGATGAATGAATATTTTTTTTTGTGAGAATGGTAACATTAAAATGATTATCATTTTTATTTGGCCATTTTGTTATTATTGTGATTTTATAGGCGCCAAGATCGTGGAGGTAGATATAAGGGTGAAACATGTGGATCCCGTTCTAGGTCAAAGGATCGGTCTCATGAAGAAGCTAGATCAAGATCAAGTTCTCCTTTACCCCCAAAG</genome_strand>
        <mrna_strand>TCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGTCTAATGGATCGCAGCACTTTAGAGTGAAGGCTAATTATTCTGGAGATCAATACCGTCACGGTCACCGTCAGCGTGAGGACTACAAGGATAAAAGCACCAGGAGCCACAGAAGAAATGACGACAATGAGGATTACAGCCGTTCCAGGAACCATAAATTTGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCAAGATCGTGGAGGTAGATATAAGGGTGAAACATGTGGATCCCGTTCTAGGTCAAAGGATCGGTCTCATGAAGAAGCTAGATCAAGATCAAGTTCTCCTTTACCCCCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312959" ref_strand="+" ref_description="SGN-E312959 [cTOA-14-B3]">
      <seq>atcatcatactaaaggtaaaaggaagtacttaaaaattatgtcccccatgtagcaattccatactttttatctactatgccaatttaaagttgctaaacatatcctggaaccatgtagaatggtgttggatatattatggaacaatggttttagatactaagtcgcttggactatctactttaggtgccgcacccgtgtcgacacaacatgggtgattgggtgtgggtgtgagattcatgtccgatttggccaaccgattttgagtattttgaccaaaatcgatgggaatttggatagttttaatgatttctataatcaatacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="50620" stop="51546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50920" g_stop="51246" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E312959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50920" e_stop="51246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCATACTAAAGGTAAAAGGAAGTACTTAAAAATTATGTCCCCCATGTAGCAATTCCATACTTTTTATCTACTATGCCAATTTAAAGTTGCTAAACATATCCTGGAACCATGTAGAATGGTGTTGGATATATTATGGAACAATGGTTTTAGATACTAAGTCGCTTGGACTATCTACTTTAGGTGCCGCACCCGTGTCGACACAACATGGGTGATTGGGTGTGGGTGTGAGATTCATGTCCGATTTGGCCAACCGATTTTGAGTATTTTGACCAAAATCGATGGGAATTTGGATAGTTTTAATGATTTCTATAATCAATACAAAA</genome_strand>
        <mrna_strand>ATCATCATACTAAAGGTAAAAGGAAGTACTTAAAAATTATGTCCCCCATGTAGCAATTCCATACTTTTTATCTACTATGCCAATTTAAAGTTGCTAAACATATCCTGGAACCATGTAGAATGGTGTTGGATATATTATGGAACAATGGTTTTAGATACTAAGTCGCTTGGACTATCTACTTTAGGTGCCGCACCCGTGTCGACACAACATGGGTGATTGGGTGTGGGTGTGAGATTCATGTCCGATTTGGCCAACCGATTTTGAGTATTTTGACCAAAATCGATGGGAATTTGGATAGTTTTAATGATTTCTATAATCAATACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541846" ref_strand="+" ref_description="SGN-E541846 [TUS-62-N14]">
      <seq>gttttatcaattttgtcaatctttgggaacagtgtaccaactgataattctgaatcaaattttgtttatttgctcagtaaagagtcttgtgcttttagaaacaaatgtcttgcatgctcacttcgtcagtctcaaaaagtagaatttgtaaaccgccttgagcttaacaatgttcagcagccaagtaaacttttgaatgatgattaacttcttcccatatactgattatatcttccatatgttatttcgatgaaggggtgtgtggtttctggaaccacacttgtggttctgtatttaacctctccctggtaatttactgtgctcttttataacttttttccaatcatgtttaacagcagtgggcaggtgaaatctgaacaggagtgtgtattagctcaggcaaggctgcacatagctatgcagaaatggcttttgaagctagtggtatgactattcctggtacagagatagggcctgttgtgactgctgaaattccaaccaaggtcttatgcttaaccgataatgacaaggtaaaatattgtagtaatgctaacgagttagtcattctctggatgttttgaaggtgattacccctcaagaattatttgatgacgtagagtatgaagaaattttggaagacatgaagaaggaggccaaaaatttggtaactgcagcttctcattcattaaaatatcttctgttatctcttttttgttttatgatatgttcttttgtttccatctgtttctcatgttcacataggaattggttctattaaaaaagatgattgaaatgagacactttcaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="53487" stop="55232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53787" g_stop="54209" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54210" i_stop="54540" i_length="331">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54541" g_stop="54932" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="812" r_length="389" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E541846" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53787" e_stop="54209"/>
          <exon e_start="54541" e_stop="54932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTATCAATTTTGTCAATCTTTGGGAACAGTGTACCAACTGATAATTCTGAATCAAATTTTGTTTATTTGCTCAGTAAAGAGTCTTGTGCTTTTAGAAACAAATGTCTTGCATGCTCACTTCGTCAGTCTCAAAAAGTAGAATTTGTAAACCGCCTTGAGCTTAACAATGTTCAGCAGCCAAGTAAACTTTTGAATGATGATTAACTTCTTCCCATATACTGATTATATCTTCCATATGTTATTTCGATGAAGGGGTGTGTGGTTTCTGGAACCACACTTGTGGTTCTGTATTTAACCTCTCCCTGGTAATTTACTGTGCTCTTTTATAACTTTTTTCCAATCATGTTTAACAGCAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAGGTTTGAATACTTTCTACAGTATTAAATTATTATTCTAAATACTGCCTTTGTCCCAAAAGTTTCGACATTTTTCACTTTTTGAGCTTTGAGCTAAAGTGAACTTTAACTAACATTTTATAATATGTTCACGTGCAGTTTGATATGTGCGAATTGTAATTGTTGTACTTATTGTGAAACTTCTAAACTCTAATTTTAATTCAATATAATAAATAAATTGATCTGATCTAACTCCTAAAATTGGTCAAACTGACCTCAATAAGCTAAAAGTGATTGGGACACTGTGCATTTTCCCTTAATTTTGAATGCTGAAGATTACATTGCTTGCTTGCAGAAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAGGTCTTATGCTTAACCGATAATGACAAGGTAAAATATTGTAGTAATGCTAACGAGTTAGTCATTCTCTGGATGTTTTGAAGGTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTGGTAACTGCAGCTTCTCATTCATTAAAATATCTTCTGTTATCTCTTTTTTGTTTTATGATATGTTCTTTTGTTTCCATCTGTTTCTCATGTTCACATAGAAATTGTTTCTATTAAAAAAAGATGATTGAAAATGAGACACTTTCAAATTGAT</genome_strand>
        <mrna_strand>GTTTTATCAATTTTGTCAATCTTTGGGAACAGTGTACCAACTGATAATTCTGAATCAAATTTTGTTTATTTGCTCAGTAAAGAGTCTTGTGCTTTTAGAAACAAATGTCTTGCATGCTCACTTCGTCAGTCTCAAAAAGTAGAATTTGTAAACCGCCTTGAGCTTAACAATGTTCAGCAGCCAAGTAAACTTTTGAATGATGATTAACTTCTTCCCATATACTGATTATATCTTCCATATGTTATTTCGATGAAGGGGTGTGTGGTTTCTGGAACCACACTTGTGGTTCTGTATTTAACCTCTCCCTGGTAATTTACTGTGCTCTTTTATAACTTTTTTCCAATCATGTTTAACAGCAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAG...........................................................................................................................................................................................................................................................................................................................................AAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAGGTCTTATGCTTAACCGATAATGACAAGGTAAAATATTGTAGTAATGCTAACGAGTTAGTCATTCTCTGGATGTTTTGAAGGTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTGGTAACTGCAGCTTCTCATTCATTAAAATATCTTCTGTTATCTCTTTTTTGTTTTATGATATGTTCTTTTGTTTCCATCTGTTTCTCATGTTCACATAGGAATTGGTTCTATT-AAAAAAGATGATTG-AAATGAGACACTTTC-AATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296734" ref_strand="+" ref_description="SGN-E296734 [cLEW-3-O21]">
      <seq>ttttatcaattttgtcaatctttgggaacagtgtaccaactgataattctgaatcaaattttgtttatttgctcagtaaagagtcttgtgcttttagaaacaaatgtcttgcatgctcacttcgtcagtctcaaaaagtagaatttgtaaaccgccttgagcttaacaatgttcagcagccaagtaaacttttgaatgatgattaacttcttcccatatactgattatatcttccatatgttatttcgatgaaggggtgtgtggtttctggaaccacacttgtggttctgtatttaacctctccctggtaatggactgtgctcttttataacttttttccaatcatgtttaacagcagtgggcaggtgaaatctgaacaggagtgtgtattagctcaggcaaggctgcacatagctatgcagaaatggcttttgaagctagtggtatgactattcctggtgcagagatatggcctgttgtgactgctgaaattccaaccaaggtcttatgcttaaccgataatgacaaggtaaaatattgtagtaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="53488" stop="54967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53788" g_stop="54209" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54210" i_stop="54540" i_length="331">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54541" g_stop="54667" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="549" r_length="127" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E296734" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53788" e_stop="54209"/>
          <exon e_start="54541" e_stop="54667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCAATTTTGTCAATCTTTGGGAACAGTGTACCAACTGATAATTCTGAATCAAATTTTGTTTATTTGCTCAGTAAAGAGTCTTGTGCTTTTAGAAACAAATGTCTTGCATGCTCACTTCGTCAGTCTCAAAAAGTAGAATTTGTAAACCGCCTTGAGCTTAACAATGTTCAGCAGCCAAGTAAACTTTTGAATGATGATTAACTTCTTCCCATATACTGATTATATCTTCCATATGTTATTTCGATGAAGGGGTGTGTGGTTTCTGGAACCACACTTGTGGTTCTGTATTTAACCTCTCCCTGGTAATTTACTGTGCTCTTTTATAACTTTTTTCCAATCATGTTTAACAGCAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAGGTTTGAATACTTTCTACAGTATTAAATTATTATTCTAAATACTGCCTTTGTCCCAAAAGTTTCGACATTTTTCACTTTTTGAGCTTTGAGCTAAAGTGAACTTTAACTAACATTTTATAATATGTTCACGTGCAGTTTGATATGTGCGAATTGTAATTGTTGTACTTATTGTGAAACTTCTAAACTCTAATTTTAATTCAATATAATAAATAAATTGATCTGATCTAACTCCTAAAATTGGTCAAACTGACCTCAATAAGCTAAAAGTGATTGGGACACTGTGCATTTTCCCTTAATTTTGAATGCTGAAGATTACATTGCTTGCTTGCAGAAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAGGTCTTATGCTTAACCGATAATGACAAGGTAAAATATTGTAGTAATGC</genome_strand>
        <mrna_strand>TTTTATCAATTTTGTCAATCTTTGGGAACAGTGTACCAACTGATAATTCTGAATCAAATTTTGTTTATTTGCTCAGTAAAGAGTCTTGTGCTTTTAGAAACAAATGTCTTGCATGCTCACTTCGTCAGTCTCAAAAAGTAGAATTTGTAAACCGCCTTGAGCTTAACAATGTTCAGCAGCCAAGTAAACTTTTGAATGATGATTAACTTCTTCCCATATACTGATTATATCTTCCATATGTTATTTCGATGAAGGGGTGTGTGGTTTCTGGAACCACACTTGTGGTTCTGTATTTAACCTCTCCCTGGTAATGGACTGTGCTCTTTTATAACTTTTTTCCAATCATGTTTAACAGCAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAG...........................................................................................................................................................................................................................................................................................................................................AAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTGCAGAGATATGGCCTGTTGTGACTGCTGAAATTCCAACCAAGGTCTTATGCTTAACCGATAATGACAAGGTAAAATATTGTAGTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252948" ref_strand="-" ref_description="SGN-E252948 [cLEG-25-E22]">
      <seq>gataatgacaaggtaaaatattgtagtaatgctaacgagttagtcattctctggatgttttgaaggtgattacccctcaagaattatttgatgacgtagagtatgaagaaattttggaagacatgaagaaggaggccaaaaatttggtgacttgattgatgttgttattcctcggccagaacctgatcaaaaaatggtgatggttttgggaaggtatttctcgagtactctgacactatcgattgcacgaaagcaaaggcagcacttggtggcaggaaatttggagggaatactgctgttgccattttttatcctgaagacaaatgctacaagaaggattatgcctcttaattttctgaatatcttccatgtttatagtcttgtatagttttagtgcttgcaatcggccatttagctgcggtcaaggccgttcgataattatttttcttccatcacaattgcaacgctaacccagccatatggtgggtggtttgagctgcttgatatagtctctctattaggagaagtttttcatgtttcaaactattgtaatgaccagattttggatatatctatataatgctcaatattactaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="54336" stop="56737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54636" g_stop="54781" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54782" i_stop="55388" i_length="607">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55389" g_stop="55455" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="213" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55456" i_stop="56047" i_length="592">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56048" g_stop="56437" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="603" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E252948" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252948" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54636" e_stop="54781"/>
          <exon e_start="55389" e_stop="55455"/>
          <exon e_start="56048" e_stop="56437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATGACAAGGTAAAATATTGTAGTAATGCTAACGAGTTAGTCATTCTCTGGATGTTTTGAAGGTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTGGTAACTGCAGCTTCTCATTCATTAAAATATCTTCTGTTATCTCTTTTTTGTTTTATGATATGTTCTTTTGTTTCCATCTGTTTCTCATGTTCACATAGAAATTGTTTCTATTAAAAAAAGATGATTGAAAATGAGACACTTTCAAATTGATTTATAGTATGATGGTTGATTGCTCACCTTCATAATTGGATGAACCAATGATTTAAGACTTAAATGAAGAAGAGTTTAAGGGAAAAAGGTAACTGGATTTATAATAGTTTTCAGTTCTATGGGCGAAACATTTTTGAATTGATGATAAAAGATTGGGTACCTTTGCGGAACAATATACTTTCAACTGTTCTTGCTTGAACTTTCAGCCACGAATTTTGTCTCGCAAGCTGCTGCTCTATAATGTCGATTTCACTCATAGGACTACCCCTCATAAGTCTCTGCTACTTTCATTGACGTGTTCCCTATTTATGTGGATTCTCGTCTTTCAGTTTATTAATATTTCCTGATATATTGTACATCCATTTCTATTTCGGGATTTCCTTTTATATGTGCTACTCAATCTGTACAATTAAGTATTTGATAAGTCAGTATTGGATTTCCTTTGGCTGAATTATAGGTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAGGTAATAATGTTGTCACTTTTACGTGTCCGAGCTTTAAAAATTAATTCGATTTTGTTATGCTGAGCAATTGTTGTATCTGTGCTGTGTGTTCTGCAAATATATTTTATTGTTTAAATAATTTGCTGCCATTGAAAGTCCATGGTCACTTCTTGGTTGACATTGGCAAAATAAAGTGCTCTGTTACTACAAGTTATCGCTTATTTTCCTTTTTACTGTTTGACTCTAGATTTTGAGATCATCTTAGAATGTACTGTTTAGGCAATTTTTGAATGAAGAAGTGATGCATAAGCATTTTTATTTTTTTCTTTCCTCATCTGTCTCTCATATGTATTAATCCTCAATCTGCTGCACAGAGAATTGAAACGACTCATTATTTAATCCTCATAAAAAATGCACACAGAATGTAGCATCACAATCAATTGATCATTTTGCCAGTAATGTACATCTTGATAGTTCACTTCAACCCTGCATGGGTGTTATATATAGCCATATTTCAACAGTCAGGATAATACGCAACAATTATAGTAGTCTTTTTCGATCTTGAATCCCCCCCCTCTCCTTCTTTCAGATGGTTTTGTGTTTCAAACTGCAGGTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAATATAA</genome_strand>
        <mrna_strand>GATAATGACAAGGTAAAATATTGTAGTAATGCTAACGAGTTAGTCATTCTCTGGATGTTTTGAAGGTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688665" ref_strand="-" ref_description="SGN-E688665 [t3_tus_54_F20]">
      <seq>tacccctcaagaattatttgatgacgtagagtatgaagaaattttcgaagacatgaagaaggaggccaaaaatttggtgacttgattgatgttgttattcctcggccagaacctgatcaaaaaatggtgatggttttgggaaggtatttctcgagtactttgacactatcgattgcacgaaagcaaaggcagcacttggtggcaggaaatttggagggaatactgctgttgccattttttatcctgaagacaaatgctacaagaaggattatgcctcttaattttctgaatatcttccatgtttatagtcttgtatagttttagtgcttgcaatcggccatttagctgcggtcaaggccgttcgataattatttttcttccatcacaattgcaacgctaacccagccatatggtgggtggtttgagctgcttgatatagtctctctattaggagaagtttttcatgtttcaaactattgtaatgaccagattttggatatatctatataatgctcaatattactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="54406" stop="56737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54706" g_stop="54781" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54782" i_stop="55388" i_length="607">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55389" g_stop="55455" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="143" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55456" i_stop="56047" i_length="592">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56048" g_stop="56438" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="534" r_length="391" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E688665" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688665" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54706" e_stop="54781"/>
          <exon e_start="55389" e_stop="55455"/>
          <exon e_start="56048" e_stop="56438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTGGTAACTGCAGCTTCTCATTCATTAAAATATCTTCTGTTATCTCTTTTTTGTTTTATGATATGTTCTTTTGTTTCCATCTGTTTCTCATGTTCACATAGAAATTGTTTCTATTAAAAAAAGATGATTGAAAATGAGACACTTTCAAATTGATTTATAGTATGATGGTTGATTGCTCACCTTCATAATTGGATGAACCAATGATTTAAGACTTAAATGAAGAAGAGTTTAAGGGAAAAAGGTAACTGGATTTATAATAGTTTTCAGTTCTATGGGCGAAACATTTTTGAATTGATGATAAAAGATTGGGTACCTTTGCGGAACAATATACTTTCAACTGTTCTTGCTTGAACTTTCAGCCACGAATTTTGTCTCGCAAGCTGCTGCTCTATAATGTCGATTTCACTCATAGGACTACCCCTCATAAGTCTCTGCTACTTTCATTGACGTGTTCCCTATTTATGTGGATTCTCGTCTTTCAGTTTATTAATATTTCCTGATATATTGTACATCCATTTCTATTTCGGGATTTCCTTTTATATGTGCTACTCAATCTGTACAATTAAGTATTTGATAAGTCAGTATTGGATTTCCTTTGGCTGAATTATAGGTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAGGTAATAATGTTGTCACTTTTACGTGTCCGAGCTTTAAAAATTAATTCGATTTTGTTATGCTGAGCAATTGTTGTATCTGTGCTGTGTGTTCTGCAAATATATTTTATTGTTTAAATAATTTGCTGCCATTGAAAGTCCATGGTCACTTCTTGGTTGACATTGGCAAAATAAAGTGCTCTGTTACTACAAGTTATCGCTTATTTTCCTTTTTACTGTTTGACTCTAGATTTTGAGATCATCTTAGAATGTACTGTTTAGGCAATTTTTGAATGAAGAAGTGATGCATAAGCATTTTTATTTTTTTCTTTCCTCATCTGTCTCTCATATGTATTAATCCTCAATCTGCTGCACAGAGAATTGAAACGACTCATTATTTAATCCTCATAAAAAATGCACACAGAATGTAGCATCACAATCAATTGATCATTTTGCCAGTAATGTACATCTTGATAGTTCACTTCAACCCTGCATGGGTGTTATATATAGCCATATTTCAACAGTCAGGATAATACGCAACAATTATAGTAGTCTTTTTCGATCTTGAATCCCCCCCCTCTCCTTCTTTCAGATGGTTTTGTGTTTCAAACTGCAGGTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAATATAAG</genome_strand>
        <mrna_strand>TACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTCGAAGACATGAAGAAGGAGGCCAAAAATTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCTCGAGTACTTTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550916" ref_strand="-" ref_description="SGN-E550916 [TUS-54-F20]">
      <seq>gaattatttgatgacgtagagtatgaagaaattttcgaagacatgaagaaggaggccaaaaatttggtgacttgattgatgttgttattcctcggccagaacctgatcaaaaaatggtgatggttttgggaaggtatttctcgagtactttgacactatcgattgcacgaaagcaaaggcagcacttggtggcaggaaatttggagggaatactgctgttgccattttttatcctgaagacaaatgctacaagaaggattatgcctcttaattttctgaatatcttccatgtttatagtcttgtatagttttagtgcttgcaatcggccatttagctgcggtcaaggccgttcgataattatttttcttccatcacaattgcaacgctaacccagccatatggtgggtggtttgagctgcttgatatagtctctctattaggagaagtttttcatgtttcaaactattgtaatgaccagattttggatatatctatataatgctcaatattactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="54416" stop="56737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54716" g_stop="54781" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54782" i_stop="55388" i_length="607">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55389" g_stop="55455" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="133" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55456" i_stop="56047" i_length="592">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56048" g_stop="56438" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="524" r_length="391" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E550916" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550916" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54716" e_stop="54781"/>
          <exon e_start="55389" e_stop="55455"/>
          <exon e_start="56048" e_stop="56438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTGGTAACTGCAGCTTCTCATTCATTAAAATATCTTCTGTTATCTCTTTTTTGTTTTATGATATGTTCTTTTGTTTCCATCTGTTTCTCATGTTCACATAGAAATTGTTTCTATTAAAAAAAGATGATTGAAAATGAGACACTTTCAAATTGATTTATAGTATGATGGTTGATTGCTCACCTTCATAATTGGATGAACCAATGATTTAAGACTTAAATGAAGAAGAGTTTAAGGGAAAAAGGTAACTGGATTTATAATAGTTTTCAGTTCTATGGGCGAAACATTTTTGAATTGATGATAAAAGATTGGGTACCTTTGCGGAACAATATACTTTCAACTGTTCTTGCTTGAACTTTCAGCCACGAATTTTGTCTCGCAAGCTGCTGCTCTATAATGTCGATTTCACTCATAGGACTACCCCTCATAAGTCTCTGCTACTTTCATTGACGTGTTCCCTATTTATGTGGATTCTCGTCTTTCAGTTTATTAATATTTCCTGATATATTGTACATCCATTTCTATTTCGGGATTTCCTTTTATATGTGCTACTCAATCTGTACAATTAAGTATTTGATAAGTCAGTATTGGATTTCCTTTGGCTGAATTATAGGTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAGGTAATAATGTTGTCACTTTTACGTGTCCGAGCTTTAAAAATTAATTCGATTTTGTTATGCTGAGCAATTGTTGTATCTGTGCTGTGTGTTCTGCAAATATATTTTATTGTTTAAATAATTTGCTGCCATTGAAAGTCCATGGTCACTTCTTGGTTGACATTGGCAAAATAAAGTGCTCTGTTACTACAAGTTATCGCTTATTTTCCTTTTTACTGTTTGACTCTAGATTTTGAGATCATCTTAGAATGTACTGTTTAGGCAATTTTTGAATGAAGAAGTGATGCATAAGCATTTTTATTTTTTTCTTTCCTCATCTGTCTCTCATATGTATTAATCCTCAATCTGCTGCACAGAGAATTGAAACGACTCATTATTTAATCCTCATAAAAAATGCACACAGAATGTAGCATCACAATCAATTGATCATTTTGCCAGTAATGTACATCTTGATAGTTCACTTCAACCCTGCATGGGTGTTATATATAGCCATATTTCAACAGTCAGGATAATACGCAACAATTATAGTAGTCTTTTTCGATCTTGAATCCCCCCCCTCTCCTTCTTTCAGATGGTTTTGTGTTTCAAACTGCAGGTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAATATAAG</genome_strand>
        <mrna_strand>GAATTATTTGATGACGTAGAGTATGAAGAAATTTTCGAAGACATGAAGAAGGAGGCCAAAAATTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCTCGAGTACTTTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541844" ref_strand="+" ref_description="SGN-E541844 [TUS-62-N14](-)">
      <seq>gtttaaataatttgctgccatgaaaagtccatggtcacttccttggtgacattggcaaaataaagtgctctgttactacaagttatcgcttattttcctttttactgtttgactctagattttgagatcatcttagaatgtactgtttaggcaatttttgaatgaagaagtgatgcataagcatttttatttttttctttcctcatctgtctctcatatgtattaatcctcaatctgctgcacagagaattgaaacgactcattatttaatcctcataaaaaatgcacacagaatgtagcatcacaatcaattgatcattttgccagtaatgtacatcttgatagttcacttcaaccctgcatgggtgttatatatagccatatttcaacagtcaggataatacgcaacaattatagtagtctttttcgatcttgaatcccccccctctccttctttcagatggttttgtgtttcaaactgcaggtatttctcgagtactctgacactatcgattgcacgaaagcaaaggcagcacttggtggcaggaaatttggagggaatactgctgttgccattttttatcctgaagacaaatgctacaagaaggattatgcctcttaattttctgaatatcttccatgtttatagtcttgtatagttttagtgcttgcaatcggccatttagctgcggtcaaggccgttcgataattatttttcttccatcacaattgcaacgctaacccagccatatggtgggtggtttgagctgcttgatatagtctctctattaggagaagtttttcatgtttcaaactattgtaatgaccagattttggatatatctatataatgctcaatattactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="55264" stop="56737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55564" g_stop="56438" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E541844" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55564" e_stop="56438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAATAATTTGCTGCCATTGAAAGTCCATGGTCACTTCTTGGTTGACATTGGCAAAATAAAGTGCTCTGTTACTACAAGTTATCGCTTATTTTCCTTTTTACTGTTTGACTCTAGATTTTGAGATCATCTTAGAATGTACTGTTTAGGCAATTTTTGAATGAAGAAGTGATGCATAAGCATTTTTATTTTTTTCTTTCCTCATCTGTCTCTCATATGTATTAATCCTCAATCTGCTGCACAGAGAATTGAAACGACTCATTATTTAATCCTCATAAAAAATGCACACAGAATGTAGCATCACAATCAATTGATCATTTTGCCAGTAATGTACATCTTGATAGTTCACTTCAACCCTGCATGGGTGTTATATATAGCCATATTTCAACAGTCAGGATAATACGCAACAATTATAGTAGTCTTTTTCGATCTTGAATCCCCCCCCTCTCCTTCTTTCAGATGGTTTTGTGTTTCAAACTGCAGGTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAATATAAG</genome_strand>
        <mrna_strand>GTTTAAATAATTTGCTGCCATGAAAAGTCCATGGTCACTTCCTTGGTGACATTGGCAAAATAAAGTGCTCTGTTACTACAAGTTATCGCTTATTTTCCTTTTTACTGTTTGACTCTAGATTTTGAGATCATCTTAGAATGTACTGTTTAGGCAATTTTTGAATGAAGAAGTGATGCATAAGCATTTTTATTTTTTTCTTTCCTCATCTGTCTCTCATATGTATTAATCCTCAATCTGCTGCACAGAGAATTGAAACGACTCATTATTTAATCCTCATAAAAAATGCACACAGAATGTAGCATCACAATCAATTGATCATTTTGCCAGTAATGTACATCTTGATAGTTCACTTCAACCCTGCATGGGTGTTATATATAGCCATATTTCAACAGTCAGGATAATACGCAACAATTATAGTAGTCTTTTTCGATCTTGAATCCCCCCCCTCTCCTTCTTTCAGATGGTTTTGTGTTTCAAACTGCAGGTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212623" ref_strand="+" ref_description="SGN-E212623 [cLEC-74-P22]">
      <seq>gtttatcaccttgtttgtgctttctcactaatttactttttcatagattttgtttgagaagaaagaaaatgttggcaattttcaagaaaagtgtggttgatccaccaatggagctgcagagcccagcctctttgcaatcatcaaacaaggctgtttcccctgaagagactatgaagaatttcttagcttcaaataccaacaatgggttttctattggattcatggacaaggcattcttggcctattccaaacctccatcctcatcaaatgctcaacaaagggtgttctgtgggttgaatgacatatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctggtcaaagggtaccaatggaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccatttccagctcatgaggttctcaagggactttgaggtagctatgggctttgtgatctatgatcataaagctggtaatgtcttttgttgcctttggtgctgatngaactgcaaagatgttctgggggatagcatctgatggatctgtcatgatctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57093" stop="58924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57393" g_stop="57672" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57918" g_stop="58158" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="525" r_length="245" r_score="0.938"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58562" g_stop="58624" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="588" r_length="63" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E212623" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57393" e_stop="57672"/>
          <exon e_start="57918" e_stop="58158"/>
          <exon e_start="58562" e_stop="58624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATCACCTTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAGGTGAATCTTTTTAACCCCCCACCAGAAGAAAAAAGAAATCACCCATGCCTCTGTTATCTTGAGATTTGGCTATATTTTTTATGAAATGATCGTAAAGATTTAATTTTTCACCAGTAAATAAACAAAAAGATGTAGTGGGATGCTAAATGTTAATGATCATTTCTTGAATTCTTCGTTCTTTTGTCATTTTGCAGCTTTTTATTTGTGGTAATGAGACAAATGTATGGACTTTTTTGGTTTTTCAGGTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCT-GTCAAAGGGTACCAAT-GAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTAT-GGCTTTGTGATCTATGATCATAAGGCTGGTAATGTC-TTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCT</genome_strand>
        <mrna_strand>GTTTATCACCTTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG.....................................................................................................................................................................................................................................................GGTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGGTCAAAGGGTACCAATGGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTTCCAGCTCATGAGGTTCTCAAGGGACTTTGAGGTAGCTATGGGCTTTGTGATCTATGATCATAAAGCTGGTAATGTCTTTTGTTGCCTTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATNGAACTGCAAAGATGTTCTGGGGGATAGCATCTGATGGATCTGTCATGATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394524" ref_strand="+" ref_description="SGN-E394524 [TUS-14-D3]">
      <seq>tatcaccttgtttgtgctttctcactaatttactttttcatagattttgtttgagaagaaagaaaatgttggcaattttcaagaaaagtgtggttgatccaccaatggagctgcagagcccagcctctttgcaatcatcaaacaaggctgtttcccctgaagagactatgaagaatttcttagcttcaaataccaacaatgggttttctattggattcatggacaaggcattcttggcctattccaaacctccatcctcatcaaatgctcaacaaaggttgttctgtgggttgaatgacatatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgtggatcatatcaaaggaagctgtctcaaatcatttgctcccttcccaaccgggtgcatgtaccacagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57096" stop="59155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57396" g_stop="57672" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57918" g_stop="58158" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="518" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="639" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58835" g_stop="58855" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="660" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E394524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57396" e_stop="57672"/>
          <exon e_start="57918" e_stop="58158"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="58855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCACCTTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAGGTGAATCTTTTTAACCCCCCACCAGAAGAAAAAAGAAATCACCCATGCCTCTGTTATCTTGAGATTTGGCTATATTTTTTATGAAATGATCGTAAAGATTTAATTTTTCACCAGTAAATAAACAAAAAGATGTAGTGGGATGCTAAATGTTAATGATCATTTCTTGAATTCTTCGTTCTTTTGTCATTTTGCAGCTTTTTATTTGTGGTAATGAGACAAATGTATGGACTTTTTTGGTTTTTCAGGTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCACAGTGAAA</genome_strand>
        <mrna_strand>TATCACCTTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG.....................................................................................................................................................................................................................................................GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GGTGCATGTACCACAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202371" ref_strand="+" ref_description="SGN-E202371 [cLEC-6-F4]">
      <seq>atcaccttgtttgtgctttctcactaatttactttttcatagattttgtttgagaagaaagaaaatgttggcaattttcaagaaaagtgtggttgatccaccaatggagctgcagagcccagcctctttgcaatcatcaaacaaggctgtttcccctgaagagactatgaagaatttcttagcttcaaataccaacaatgggttttctattggattcatggacaaggcattcttggcctattccaaacctccatcctcatcaaatgctcaacaaaggttgttctgtgggttgaatgacatatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57097" stop="58925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57397" g_stop="57672" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57918" g_stop="58158" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="517" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58562" g_stop="58625" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="581" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E202371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57397" e_stop="57672"/>
          <exon e_start="57918" e_stop="58158"/>
          <exon e_start="58562" e_stop="58625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCTTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAGGTGAATCTTTTTAACCCCCCACCAGAAGAAAAAAGAAATCACCCATGCCTCTGTTATCTTGAGATTTGGCTATATTTTTTATGAAATGATCGTAAAGATTTAATTTTTCACCAGTAAATAAACAAAAAGATGTAGTGGGATGCTAAATGTTAATGATCATTTCTTGAATTCTTCGTTCTTTTGTCATTTTGCAGCTTTTTATTTGTGGTAATGAGACAAATGTATGGACTTTTTTGGTTTTTCAGGTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTG</genome_strand>
        <mrna_strand>ATCACCTTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG.....................................................................................................................................................................................................................................................GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204561" ref_strand="+" ref_description="SGN-E204561 [cLEC-24-C24]">
      <seq>tcaccttgtttgtgctttctcactaatttactttttcatagattttgtttgagaagaaagaaaatgttggcaattttcaagaaaagtgtggttgatccaccaatggagctgcagagcccagcctctttgcaatcatcaaacaaggctgtttcccctgaagagactatgaagaatttcttagcttcaaataccaacaatgggttttctattggattcatggacaaggcattcttggcctattccaaacctccatcctcatcaaatgctcaacaaaggttgttctgtgggttgaatgacatatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcttacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57098" stop="58900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57398" g_stop="57672" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57918" g_stop="58158" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="516" r_length="241" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58562" g_stop="58600" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="555" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E204561" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57398" e_stop="57672"/>
          <exon e_start="57918" e_stop="58158"/>
          <exon e_start="58562" e_stop="58600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAGGTGAATCTTTTTAACCCCCCACCAGAAGAAAAAAGAAATCACCCATGCCTCTGTTATCTTGAGATTTGGCTATATTTTTTATGAAATGATCGTAAAGATTTAATTTTTCACCAGTAAATAAACAAAAAGATGTAGTGGGATGCTAAATGTTAATGATCATTTCTTGAATTCTTCGTTCTTTTGTCATTTTGCAGCTTTTTATTTGTGGTAATGAGACAAATGTATGGACTTTTTTGGTTTTTCAGGTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCA</genome_strand>
        <mrna_strand>TCACCTTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG.....................................................................................................................................................................................................................................................GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCTTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213477" ref_strand="+" ref_description="SGN-E213477 [cLEC-71-D14]">
      <seq>ttgtttgtgctttctcactaatttactttttcatagattttgtttgagaagaaagaaaatgttggcaattttcaagaaaagtgtggttgatccaccaatggagctgcagagcccagcctctttgcaatcatcaaacaaggctgtttcccctgaagagactatgaagaatttcttagcttcaaataccaacaatgggttttctattggattcatggacaaggcattcttggcctattccaaacctccatcctcatcaaatgctcaacaaaggttgttctgtgggttgaatgacatatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgtggatcatatcaaaggaagctgtctcaaatcatttgctcccttcccaaccgggtgcatgtaccacagtgaaagtggattgaagagctttgagcatccaagtttcaagatgaaagcaatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57103" stop="59205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57403" g_stop="57672" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57918" g_stop="58158" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="511" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="632" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58835" g_stop="58905" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="703" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E213477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57403" e_stop="57672"/>
          <exon e_start="57918" e_stop="58158"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="58905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAGGTGAATCTTTTTAACCCCCCACCAGAAGAAAAAAGAAATCACCCATGCCTCTGTTATCTTGAGATTTGGCTATATTTTTTATGAAATGATCGTAAAGATTTAATTTTTCACCAGTAAATAAACAAAAAGATGTAGTGGGATGCTAAATGTTAATGATCATTTCTTGAATTCTTCGTTCTTTTGTCATTTTGCAGCTTTTTATTTGTGGTAATGAGACAAATGTATGGACTTTTTTGGTTTTTCAGGTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCA</genome_strand>
        <mrna_strand>TTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG.....................................................................................................................................................................................................................................................GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361740" ref_strand="+" ref_description="SGN-E361740 [cLPP-12-L18]">
      <seq>actaatttactttttcatagattttgtttgagaagaaagaaaatgttggcaattttcaagaaaagtgtggttgatccaccaatggagctgcagagcccagcctctttgcaatcatcaaacaaggctgtttcccctgaagagactatgaagaatttcttagcttcaaattccaacaatgggttttccattggattcatggacaaggcattcttggcctattccaaacctccatcctcatcaaatgctcaacaaaggttgttctgtgggttgaatgacatatactgcattttcttgggaagcttgaacaacttatgggcactaaacaagcagtatggtctgccaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57119" stop="58380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57419" g_stop="57672" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57918" g_stop="58080" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E361740" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57419" e_stop="57672"/>
          <exon e_start="57918" e_stop="58080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAGGTGAATCTTTTTAACCCCCCACCAGAAGAAAAAAGAAATCACCCATGCCTCTGTTATCTTGAGATTTGGCTATATTTTTTATGAAATGATCGTAAAGATTTAATTTTTCACCAGTAAATAAACAAAAAGATGTAGTGGGATGCTAAATGTTAATGATCATTTCTTGAATTCTTCGTTCTTTTGTCATTTTGCAGCTTTTTATTTGTGGTAATGAGACAAATGTATGGACTTTTTTGGTTTTTCAGGTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCAT</genome_strand>
        <mrna_strand>ACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATTCCAACAATGGGTTTTCCATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG.....................................................................................................................................................................................................................................................GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAACAACTTATGGGCACTAAACAAGCAGTATGGTCTGCCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213303" ref_strand="+" ref_description="SGN-E213303 [cLEC-71-B13]">
      <seq>tttttcatagattttgtttgagaagaaagaaaatgttggcaattttcaagaaaagtgtggttgatccaccaatggagctgcagagcccagcctctttgcaatcatcaaacaaggctgtttcccctgaagagactatgaagaatttcttagcttcaaataccaacaatgggttttctattggattcatggacaaggcattcttggcctattccaaacctccatcctcatcaaatgctcaacaaaggttgttctgtgggttgaatgacatatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgtggatcatatcaaaggaagctgtctcaaatcatttgctcccttcccaaccgggtgcatgtaccacagtgaaagtggattgaagagctttgagcatccaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57129" stop="59184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57429" g_stop="57672" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57918" g_stop="58158" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="485" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="606" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58835" g_stop="58884" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="656" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E213303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57429" e_stop="57672"/>
          <exon e_start="57918" e_stop="58158"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="58884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAGGTGAATCTTTTTAACCCCCCACCAGAAGAAAAAAGAAATCACCCATGCCTCTGTTATCTTGAGATTTGGCTATATTTTTTATGAAATGATCGTAAAGATTTAATTTTTCACCAGTAAATAAACAAAAAGATGTAGTGGGATGCTAAATGTTAATGATCATTTCTTGAATTCTTCGTTCTTTTGTCATTTTGCAGCTTTTTATTTGTGGTAATGAGACAAATGTATGGACTTTTTTGGTTTTTCAGGTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGT</genome_strand>
        <mrna_strand>TTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG.....................................................................................................................................................................................................................................................GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237684" ref_strand="+" ref_description="SGN-E237684 [cLED-19-B11]">
      <seq>aagaatttcttagcttcaaataccaacaatgggttttctattggattcatggacaaggcattcttggcctattccaaacctccatcctcatcaaatgctcaacaaaggttgttctgtgggttgaatgacatatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggcgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgtggatcatatcaaaggaagctgtctcaaatcatttgctcccttcccaaccgggtgcatgtaccacagtgaaagtggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57266" stop="59164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57566" g_stop="57672" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57918" g_stop="58158" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="348" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="469" r_length="121" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58835" g_stop="58864" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="499" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E237684" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57566" e_stop="57672"/>
          <exon e_start="57918" e_stop="58158"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="58864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAGGTGAATCTTTTTAACCCCCCACCAGAAGAAAAAAGAAATCACCCATGCCTCTGTTATCTTGAGATTTGGCTATATTTTTTATGAAATGATCGTAAAGATTTAATTTTTCACCAGTAAATAAACAAAAAGATGTAGTGGGATGCTAAATGTTAATGATCATTTCTTGAATTCTTCGTTCTTTTGTCATTTTGCAGCTTTTTATTTGTGGTAATGAGACAAATGTATGGACTTTTTTGGTTTTTCAGGTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCACAGTGAAAGTGGATTGA</genome_strand>
        <mrna_strand>AAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG.....................................................................................................................................................................................................................................................GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GGTGCATGTACCACAGTGAAAGTGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342074" ref_strand="+" ref_description="SGN-E342074 [cTOF-10-F14]">
      <seq>aatttcttagcttcaaataccaacaatgggttttctattggattcatggacaaggcattcttggcctattccaaacctccatcctcatcaaatgctcaacaaaggttgttctgtgggttgaatgacatatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttgtgagttcttttctagttctaaagtttatccccatcaatatgcaatttttaataatggtagttttcaagcctgttagtgctgagcacctcaactattcattagagtacatgttgcctcttaccaacacagctatgtcataactgcctactaaggcttaggcagatagaaagaaatgattttagcagattctatctctttcttgcagttacaatcaccaaaagaaagtgcattgtctctataaatgtatataaacaacattttcttactctaattggagatggaatgatgggtgatatcaatcttgaaagggaacatatacaatagatcatttattatattctattaagacataatttcctttttttctctttcattgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57269" stop="58837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57569" g_stop="57672" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57918" g_stop="58537" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="725" r_length="621" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E342074" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57569" e_stop="57672"/>
          <exon e_start="57918" e_stop="58537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAGGTGAATCTTTTTAACCCCCCACCAGAAGAAAAAAGAAATCACCCATGCCTCTGTTATCTTGAGATTTGGCTATATTTTTTATGAAATGATCGTAAAGATTTAATTTTTCACCAGTAAATAAACAAAAAGATGTAGTGGGATGCTAAATGTTAATGATCATTTCTTGAATTCTTCGTTCTTTTGTCATTTTGCAGCTTTTTATTTGTGGTAATGAGACAAATGTATGGACTTTTTTGGTTTTTCAGGTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGAT-GGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAAT</genome_strand>
        <mrna_strand>AATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG.....................................................................................................................................................................................................................................................GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550682" ref_strand="+" ref_description="SGN-E550682 [TUS-50-A5]">
      <seq>atatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgtggatcatatcaaaggaagctgtctcaaatcatttgctcccttcccaaccgggtgcatgtaccacagtgaaagtggattgaagagctttgagcatccaagtttcaagatgaaagcaatgccaagagtggatagtgaaggagccatgtgtggagcttgcttcaaagttgatgtctactccaaggtgaatagcatgccaagagttggaagttctgccaactgggctaattggggccagcaggcttaggttcatttggacctcactttaactaactacaatataaagaagaaaagaaaaaagtactttatctttgtcttcattcctgttgttattttctgtttccctattgtatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57640" stop="59438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57940" g_stop="58158" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="340" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58835" g_stop="59138" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="644" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E550682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57940" e_stop="58158"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="59138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCA</genome_strand>
        <mrna_strand>ATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688339" ref_strand="+" ref_description="SGN-E688339 [t3_tus_50_a05]">
      <seq>atatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgtggatcatatcaaaggaagctgtctcaaatcatttgctcccttcccaaccgggtgcatgtaccacagtgaaagtggattgaagagctttgagcatccaagtttcaagatgaaagcaatgccaagagtggatagtgaaggagccatgtgtggagcttgcttcaaagttgatgtctactccaaggtgaatagcatgccaagagttggaagttctgccaactgggctaattggggccagcaggcttaggttcatttggacctcactttaactaactacaatataaagaagaaaagaaaaaagtactttatctttgtcttcattcctgttgttattttctgtttccctattgtatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57640" stop="59438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57940" g_stop="58158" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="340" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58835" g_stop="59138" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="644" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E688339" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57940" e_stop="58158"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="59138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCA</genome_strand>
        <mrna_strand>ATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550707" ref_strand="+" ref_description="SGN-E550707 [TUS-50-D8]">
      <seq>atatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgtggatcatatcaaaggaagctgtctcaaatcatttgctcccttcccaaccgggtgcatgtaccacagtgaaagtggattgaagagctttgagcatccaagtttcaagatgaaagcaatgccaagagtggatagtgaaggagccatgtgtggagcttgcttcaaagttgatgtctactccaaggtgaatagcatgccaagagttggaagttctgccaactgggctaattggggccagcaggcttaggttcatttggacctcactttaactaactacaatataaagaagaaaagaaaaaagtactttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57640" stop="59390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57940" g_stop="58158" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="340" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58835" g_stop="59090" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="596" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E550707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57940" e_stop="58158"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="59090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTAT</genome_strand>
        <mrna_strand>ATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688373" ref_strand="+" ref_description="SGN-E688373 [t3_tus_50_d08]">
      <seq>atatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgtggatcatatcaaaggaagctgtctcaaatcatttgctcccttcccaaccgggtgcatgtaccacagtgaaagtggattgaagagctttgagcatccaagtttcaagatgaaagcaatgccaagagtggatagtgaaggagccatgtgtggagcttgcttcaaagttgatgtctactccaaggtgaatagcatgccaagagttggaagttctgccaactgggctaattggggccagcaggcttaggttcatttggacctcactttaactaactacaatataaagaagaaaagaaaaaagtactttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57640" stop="59390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57940" g_stop="58158" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="340" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58835" g_stop="59090" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="596" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E688373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57940" e_stop="58158"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="59090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTAT</genome_strand>
        <mrna_strand>ATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205129" ref_strand="+" ref_description="SGN-E205129 [cLEC-16-G12]">
      <seq>tatactgcattttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgtggatcatatcaaaggaagctgtctcaaatcatttgctcccttcccaaccgggtgcatgtaccacagtgaaagtggattgaagagctttgagcatccaagtttcaagatgaaagcaatgccaagagtggatagtgaaggagccatgtgtggagcttgcttcaaagttgatgtctactccaaggtgaatagcatgccaagagttggaagttctgccaactgggctaattggggccagcaggcttaggttcatttggacctcactttaactaactacaatataaagaagaaaagaaaaaagtacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57641" stop="59389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57941" g_stop="58158" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="339" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58835" g_stop="59089" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="594" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E205129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57941" e_stop="58158"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="59089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTA</genome_strand>
        <mrna_strand>TATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200393" ref_strand="+" ref_description="SGN-E200393 [cLEC-1-I1]">
      <seq>attttcttgggaagcttgaataacttatgggcactaaacaagcagtatggtctgtcaaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgtggatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57649" stop="58940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57949" g_stop="58158" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58562" g_stop="58640" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="289" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E200393" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57949" e_stop="58158"/>
          <exon e_start="58562" e_stop="58640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATA</genome_strand>
        <mrna_strand>ATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394523" ref_strand="+" ref_description="SGN-E394523 [TUS-14-D3](-)">
      <seq>caaagggtaccaatgaggccatgcttgtgagtgaagcatatcgtacccttcgtgacagaggtccattcccagctcatgaggttctcaagggacttgagggtagctatggctttgtgatctatgatcataaggctggtaatgtctttgttgcccttggtgctgatgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgtggatcatatcaaaggaagctgtctcaaatcatttgctcccttcccaaccgggtgcatgtaccacagtgaaagtggattgaagagctttgagcatccaagtttcaagatgaaagcaatgccaagagtggatagtgaaggagccatgtgtggagcttgcttcaaagttgatgtctactccaaggtgaatagcatgccaagagttggaagttctgccaactgggctaattggggccagcaggcttaggttcatttggacctcactttaactaactacaatataaagaagaaaagaaaaaagtactttatctttgtcttcattcctgttgttattttctgtttccctattgtatttcaataagcctcctgcatcttccataagggcctcagctttgtaaattttcacatgaggttccaacatgagaagattgttgagtttccctttttgtttgttttcttagttcctaagtgttgaaaattagtaatgagcaattagaacattctatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57704" stop="59591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58004" g_stop="58158" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="276" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58835" g_stop="59291" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="733" r_length="457" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E394523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58004" e_stop="58158"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="59291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCAATAAGCCTCCTGCATCTTCCATAAGGGCCTCAGCTTTGTAAATTTTCACATGAGGTTCCAACATGAGAAGATTGTTGAGTTTCCCTTTTTGTTTGTTTTCTTAGTTCCTAAGTGTTGAAAATTAGTAATGAGCAATTAGAACATTCTATATAA</genome_strand>
        <mrna_strand>CAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCAATAAGCCTCCTGCATCTTCCATAAGGGCCTCAGCTTTGTAAATTTTCACATGAGGTTCCAACATGAGAAGATTGTTGAGTTTCCCTTTTTGTTTGTTTTCTTAGTTCCTAAGTGTTGAAAATTAGTAATGAGCAATTAGAACATTCTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209503" ref_strand="+" ref_description="SGN-E209503 [cLEC-54-M2]">
      <seq>acttgagggtagctatggctttgtgatctatgatcataaggctgggtgctgacgaaactgcaaagatgttctggggaatagcatctgatggatctgtcatgatctctgataatgcggatcatatcaaaggaagctggctcaaatcatttgctcccttcccaaccggctgcatgttccactagcgaaagtggattgaagagctttgagcatccaagtttcaagatgaaagcaatgccaagagtggatagtgaaggagccatgtgtggagcttgcttcaaagctgatgtctactccaaggtgaatcgcatgccaagacttcgaaggtctgccaactggtctaattggggccagcaggcttaggttcatttggacctcactataactaactacaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="57795" stop="59363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58095" g_stop="58138" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58139" i_stop="58561" i_length="423">
            <donor d_prob="0.772" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58562" g_stop="58682" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="165" r_length="121" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.866" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58835" g_stop="59064" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="396" r_length="231" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E209503" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58095" e_stop="58138"/>
          <exon e_start="58562" e_stop="58682"/>
          <exon e_start="58835" e_stop="59064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAATGTCATGAATTGTGTCTATGTATAGGGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCGGTATGTAGCTCAAATTGGACCAATGTTTAAAGCAAGATGTCTTTTATCTTTTCCAGTTACACTTGACAAGAGGCTGATGGGATACAACTTCTTTTAACAAGAAAAATACATTGAAAAAAAATTGATTTTTGATGAGATGGATATCTTGGCAGGGTGCATGTACCAC-AGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATA</genome_strand>
        <mrna_strand>ACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCTGACGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGCGGATCATATCAAAGGAAGCTGGCTCAAATCATTTGCTCCCTTCCCAACCG........................................................................................................................................................GCTGCATGTTCCACTAGCGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGCTGATGTCTACTCCAAGGTGAATCGCATGCCAAGACTTCGAAGGTCTGCCAACTGGTCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTATAACTAACTACAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200394" ref_strand="+" ref_description="SGN-E200394 [cLEC-1-I1](-)">
      <seq>aatataaagaagaaaagaaaaaagtcctttatctttgtcttcattcctgttgttattttctgtttccctattgtatttcaataagcctcctgcatcttccataagggcctcagctttgtaaattttcacatgaggttccaacatgagaagattgttgagtttccctttttgtttgttttcttagttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="58759" stop="59547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59059" g_stop="59247" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E200394" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59059" e_stop="59247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCAATAAGCCTCCTGCATCTTCCATAAGGGCCTCAGCTTTGTAAATTTTCACATGAGGTTCCAACATGAGAAGATTGTTGAGTTTCCCTTTTTGTTTGTTTTCTTAGTTCCT</genome_strand>
        <mrna_strand>AATATAAAGAAGAAAAGAAAAAAGTCCTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCAATAAGCCTCCTGCATCTTCCATAAGGGCCTCAGCTTTGTAAATTTTCACATGAGGTTCCAACATGAGAAGATTGTTGAGTTTCCCTTTTTGTTTGTTTTCTTAGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245637" ref_strand="+" ref_description="SGN-E245637 [cLEF-43-B12]">
      <seq>gccggactgctggtttggtacatccgctgccagtttctcaggttgggagcaacaacattcaggtccgccttcattatattgatgggaactatactgtattgccggaagtagttgaagcttccctgggacctcacatgcagaatatgcctaggcctagaggtgcagatgctgctgggctgctattgcgtgagttagaactccatccacctgctgaggaatggcacaggagaaatatgtttggtggaccttggtctgatccagaagatgtggatgacaattctaagcttagcccatcaagggatttgacacagtacagctcattagaaaactgtgatgtatattatggagctcatggtttgtggcctangaaacgcaggatgtctgaaagagatgctgcttttgggctgaatacttcagtggggctgggtgcatatcttggtataatgggatctcgacgagatgttgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="66893" stop="65543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66593" g_stop="66454" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66453" i_stop="66172" i_length="282">
            <donor d_prob="0.555" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66171" g_stop="65843" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="469" r_length="329" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E245637" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66593" e_stop="66454"/>
          <exon e_start="66171" e_stop="65843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGACTGCTGGTTTGGTACATCCGCTGCCAGTTTCTCAGGTTGGGAGCAACAACATTCAGGTCCGCCTTCATTATATTGATGGGAACTATACTGTATTGCCGGAAGTAGTTGAAGCTTCCCTGGGACCTCACATGCAGGTAGTTCACTTGAAGCTCCTTCCTAACATTCATAAACCTCATATCGGGTCATCCTTTTTCAATTATGTGCACTACAAGAAAATAAGATGTGAAAGAAAAATGTTTGTCGGGTGGGGGGAGTTCAGCTGTTTATATTTGTTGAGCTCATTGGGCCACTTTTGGTACTTCAAATCTCCTTGACAGGAAAAAGAACAGCAAACAACTTGAAAAAGACAACTCATGTAGGGATGGGTAGAAATCCCCATAATCCTTAGACACTTATCTCATTCCCCTTTCTTGCAGAATATGCCTAGGCCTAGAGGTGCAGATGCTGCTGGGCTGCTATTGCGTGAGTTAGAACTCCATCCACCTGCTGAGGAATGGCACAGGAGAAATATGTTTGGTGGACCTTGGTCTGATCCAGAAGATGTGGATGACAATTCTAAGCTTAGCCCATCAAGGGATTTGACACAGTACAGCTCATTAGAAAACTGTGATGTATATTATGGAGCTCATGGTTTGTGGCCTAGGAAACGCAGGATGTCTGAAAGAGATGCTGCTTTTGGGCTGAATACTTCAGTGGGGCTGGGTGCATATCTTGGTATAATGGGATCTCGACGAGATGTTGTGAC</genome_strand>
        <mrna_strand>GCCGGACTGCTGGTTTGGTACATCCGCTGCCAGTTTCTCAGGTTGGGAGCAACAACATTCAGGTCCGCCTTCATTATATTGATGGGAACTATACTGTATTGCCGGAAGTAGTTGAAGCTTCCCTGGGACCTCACATGCAG..........................................................................................................................................................................................................................................................................................AATATGCCTAGGCCTAGAGGTGCAGATGCTGCTGGGCTGCTATTGCGTGAGTTAGAACTCCATCCACCTGCTGAGGAATGGCACAGGAGAAATATGTTTGGTGGACCTTGGTCTGATCCAGAAGATGTGGATGACAATTCTAAGCTTAGCCCATCAAGGGATTTGACACAGTACAGCTCATTAGAAAACTGTGATGTATATTATGGAGCTCATGGTTTGTGGCCTANGAAACGCAGGATGTCTGAAAGAGATGCTGCTTTTGGGCTGAATACTTCAGTGGGGCTGGGTGCATATCTTGGTATAATGGGATCTCGACGAGATGTTGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736251" ref_strand="+" ref_description="SGN-E736251 [LC04DG01]">
      <seq>ggctgttaggcttataggggactgccattttcttcatcggctatgtcaacttctgcatttctgttttttcttccgtggaacacaattaccgcgttttatgggggctgctcaaaggaatgctgattcttcaatgcaaaaacctcagtccggtattccaggcaaaacagaagattccaactctggtgcaaaaccaacgctaggcggtcaggttggaacaggagcaaaggggtctgaagaaggtccatctaaacggtctaggattggttctggaaatgctggtcaaggatacacatatgaggaggtgaaggtcctttttcttattctgatggatctttgtcgccggactgctggtttggtacatccgctgccagtttctcaggttgggagcaacaacattcaggtccgccttcattatattgatgggaactatactgtattgccggaagtagttgaagcttccctgggacctcacatgcagaatatgcctaggcctagaggtgcagatgctgctgggctgctattgcgtgagttagaactccatccacctgctgaggaatggcacaggagaaatatgtttggtggaccttggtctgatccagaagatgtggatgacaattctaagcttagcccatcaagggatttgacacagtacagctcattagaaaactgtgatgtatattatggagctcatggtttgtggcctaggaaacgcaggatgtctgaaagagatgctgcttttgggctgaatactgcagtggggctgggtgcatatcttggtataatgggatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="68931" stop="65560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68631" g_stop="68331" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68330" i_stop="66631" i_length="1700">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66630" g_stop="66454" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="478" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66453" i_stop="66172" i_length="282">
            <donor d_prob="0.555" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66171" g_stop="65860" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="790" r_length="312" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E736251" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68631" e_stop="68331"/>
          <exon e_start="66630" e_stop="66454"/>
          <exon e_start="66171" e_stop="65860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGTTAGGCTTATAGGGGACTGCCATTTTCTTCATCGGCTATGTCAACTTCTGCATTTCTGTTTTTTCTTCCGTGGAACACAATTACCGCGTTTTATGGGGGCTGCTCAAAGGAATGCTGATTCTTCAATGCAAAAACCTCAGTCCGGTATTCCAGGCAAAACAGAAGATTCCAACTCTGGTGCAAAACCAACGCTAGGCGGTCAGGTTGGAACAGGAGCAAAGGGGTCTGAAGAAGGTCCATCTAAACGGTCTAGGATTGGTTCTGGAAATGCTGGTCAAGGATACACATATGAGGAGGTAAACTTTATAAACTATTAATTTACCAGTTGCTCTTGTTTCTCCTTGAACTGTTCTTTGTATTGGATTGCTATACTTTTATCACTCCATTTTAGAATAATTCTCAATTTCCATGTAGCACCAAATTGGTGGTTTCAGAATAGCCGGAGACTCCTAGTGGTATCCAAGTCTCAGAATTTGGTGCATTATGAGGGGCAGCAGACTGATGATTTAAGATATATTCCTCACTGTTGAAAACAAAAGAATTGCCTAGGTTTCTATTTGAAGTCACCCAAAAGTATGGCAAAAACACCCTTCTTTCTCAGCTGCCTGGATACTTCCAGAAGCTATTTTTTTTTCTTTGGCTGCATGGGTGAGGCCAACTACATGGGTCAGCTACGTGGCCTACTCAGATTTTTCCCTTTGCTCTTTTAACCAATTTTTCTTCAACTTTTGGTCTTCATGTCCAATTTTATCAAGTATTGGAAGCTATTCTAATCCTTATTCTCTTCAAAGGCTCCCAAAAATGGAATTATGTCATCCAAACCATTATTAGTCCATTAATCTTGCAAATGGGAATGAATTTATCATTAAAAGGTAGCATAAGTTGGCAAAGATGCCAACTTATCGCTGTCCAATGAACTGCACCAAGGAGTGGAAGAAACTTCCAATCAATGAAAGAGCAGATTCAAACTTAAACACCATTATATGCTGTGTAATGAGATTGCGAAGTTCACTTTCAAATCAGATTGGGAAAATTCATGGGAAAGAAATTCTTGAAGTTGGTTGGTTACTTGTTATGAGACAGCCAGGCTGTCCAGATGGGAAAGTCTCTGTCAAACAGGATCTTTTATATTCTCTAAATGGATTCTTCCACTGTTCTATCGAGCTGGTCGGAAACTTATTCTTGTTATGATATAGCAAGCAGGCTGATTATTCAGGTGAGGAGGTCCATGTTATCTCTAAATGTATTATTCAGTCGTCCTGTCTGAGAGATAAATGGACAGTAATAAATAACCACTATGGTTCAGCAGCTGATACAAATTATCAGAATGAAAAATATTTGAGAAACTTTTAGTGATTTTATCAGTTCATGAAGAGGAAAGAGCTAGTTCTCAATATTGAGTTAAGAAGCCAAAAAGAACTGGCTAAGAATCTGAACAAGAAATCTTGAGCTATCTAAGTCATGAAAGCAACAACTATGGGCAAGCTAGAAAATGATGAGAGCTCAAGAATGAATTTAATTTTTTTTGTCCCTTTACTTTATCTCTTTCTCTGATTTTCGAATGGTTATGTAGTGAATGAGAATCTTTTTCAGTTTAGTTGATCACTCTGACAACTCAATTTTAATTGCTAATGTAAGTATCTTACTTTGAGAAGTTTTGAATCAACAAGCTCTTCCTTATAGTCTTGTACTGTTATCTAATAATTGATATTTAGGCATTTTTTTTCTAGATTGTTGGTTATTGTCGAGGAATTATGAAATGGCTCATCGGTATGCATACTTATTTTCGAAGTTGTTGATTAGTCAAGGCCATACGTTTTGTGGATGTAAAGTTTCATATTGATGAAAGGAAGCCCTTGTGAGAAAGTAAAAAAATAATTGTTTTAGAAGGTAATGAAGTAGTGAAACGTGGATTTGGATGGCTATTGATATCTGGAAAGATGGCAGTGTTTCATCCTGTGGATAGAATATTGATTAATTTGATATTATATTGCAGGTGAAGGTCCTTTTTCTTATTCTGATGGATCTTTGTCGCCGGACTGCTGGTTTGGTACATCCGCTGCCAGTTTCTCAGGTTGGGAGCAACAACATTCAGGTCCGCCTTCATTATATTGATGGGAACTATACTGTATTGCCGGAAGTAGTTGAAGCTTCCCTGGGACCTCACATGCAGGTAGTTCACTTGAAGCTCCTTCCTAACATTCATAAACCTCATATCGGGTCATCCTTTTTCAATTATGTGCACTACAAGAAAATAAGATGTGAAAGAAAAATGTTTGTCGGGTGGGGGGAGTTCAGCTGTTTATATTTGTTGAGCTCATTGGGCCACTTTTGGTACTTCAAATCTCCTTGACAGGAAAAAGAACAGCAAACAACTTGAAAAAGACAACTCATGTAGGGATGGGTAGAAATCCCCATAATCCTTAGACACTTATCTCATTCCCCTTTCTTGCAGAATATGCCTAGGCCTAGAGGTGCAGATGCTGCTGGGCTGCTATTGCGTGAGTTAGAACTCCATCCACCTGCTGAGGAATGGCACAGGAGAAATATGTTTGGTGGACCTTGGTCTGATCCAGAAGATGTGGATGACAATTCTAAGCTTAGCCCATCAAGGGATTTGACACAGTACAGCTCATTAGAAAACTGTGATGTATATTATGGAGCTCATGGTTTGTGGCCTAGGAAACGCAGGATGTCTGAAAGAGATGCTGCTTTTGGGCTGAATACTTCAGTGGGGCTGGGTGCATATCTTGGTATAATGGGATCT</genome_strand>
        <mrna_strand>GGCTGTTAGGCTTATAGGGGACTGCCATTTTCTTCATCGGCTATGTCAACTTCTGCATTTCTGTTTTTTCTTCCGTGGAACACAATTACCGCGTTTTATGGGGGCTGCTCAAAGGAATGCTGATTCTTCAATGCAAAAACCTCAGTCCGGTATTCCAGGCAAAACAGAAGATTCCAACTCTGGTGCAAAACCAACGCTAGGCGGTCAGGTTGGAACAGGAGCAAAGGGGTCTGAAGAAGGTCCATCTAAACGGTCTAGGATTGGTTCTGGAAATGCTGGTCAAGGATACACATATGAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGTCCTTTTTCTTATTCTGATGGATCTTTGTCGCCGGACTGCTGGTTTGGTACATCCGCTGCCAGTTTCTCAGGTTGGGAGCAACAACATTCAGGTCCGCCTTCATTATATTGATGGGAACTATACTGTATTGCCGGAAGTAGTTGAAGCTTCCCTGGGACCTCACATGCAG..........................................................................................................................................................................................................................................................................................AATATGCCTAGGCCTAGAGGTGCAGATGCTGCTGGGCTGCTATTGCGTGAGTTAGAACTCCATCCACCTGCTGAGGAATGGCACAGGAGAAATATGTTTGGTGGACCTTGGTCTGATCCAGAAGATGTGGATGACAATTCTAAGCTTAGCCCATCAAGGGATTTGACACAGTACAGCTCATTAGAAAACTGTGATGTATATTATGGAGCTCATGGTTTGTGGCCTAGGAAACGCAGGATGTCTGAAAGAGATGCTGCTTTTGGGCTGAATACTGCAGTGGGGCTGGGTGCATATCTTGGTATAATGGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257261" ref_strand="+" ref_description="SGN-E257261 [cLEG-46-M13]">
      <seq>ccgataagtatcaacactggcactttccctggaactccggctgttaggcttataggggactgccattttcttcatcggctatgtcaacttctgcatttctgttttttcttccgtggaacacaattaccgcgttttatgggggctgctcaaaggaatgctgattcttcaatgcaaaaacctcagtccggtattccaggcaaaacagaagattccaactctggtgcaaaaccaacgctaggcggtcaggttggaacaggagcaaaggggtctgaagaaggtccatctaaacggtctaggattggttctggaaatgctggtcaaggatacacatatgaggaggtgaaggtcctttttcttattctgatggatctttgtcgccggactgctggtttggtacatccgctgccagtttctcagggtgggagcaacaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="68969" stop="66236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68669" g_stop="68331" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68330" i_stop="66631" i_length="1700">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66630" g_stop="66536" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="434" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E257261" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68669" e_stop="68331"/>
          <exon e_start="66630" e_stop="66536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATAAGTATCAACACTGGCACTTTCCCTGGAACTCCGGCTGTTAGGCTTATAGGGGACTGCCATTTTCTTCATCGGCTATGTCAACTTCTGCATTTCTGTTTTTTCTTCCGTGGAACACAATTACCGCGTTTTATGGGGGCTGCTCAAAGGAATGCTGATTCTTCAATGCAAAAACCTCAGTCCGGTATTCCAGGCAAAACAGAAGATTCCAACTCTGGTGCAAAACCAACGCTAGGCGGTCAGGTTGGAACAGGAGCAAAGGGGTCTGAAGAAGGTCCATCTAAACGGTCTAGGATTGGTTCTGGAAATGCTGGTCAAGGATACACATATGAGGAGGTAAACTTTATAAACTATTAATTTACCAGTTGCTCTTGTTTCTCCTTGAACTGTTCTTTGTATTGGATTGCTATACTTTTATCACTCCATTTTAGAATAATTCTCAATTTCCATGTAGCACCAAATTGGTGGTTTCAGAATAGCCGGAGACTCCTAGTGGTATCCAAGTCTCAGAATTTGGTGCATTATGAGGGGCAGCAGACTGATGATTTAAGATATATTCCTCACTGTTGAAAACAAAAGAATTGCCTAGGTTTCTATTTGAAGTCACCCAAAAGTATGGCAAAAACACCCTTCTTTCTCAGCTGCCTGGATACTTCCAGAAGCTATTTTTTTTTCTTTGGCTGCATGGGTGAGGCCAACTACATGGGTCAGCTACGTGGCCTACTCAGATTTTTCCCTTTGCTCTTTTAACCAATTTTTCTTCAACTTTTGGTCTTCATGTCCAATTTTATCAAGTATTGGAAGCTATTCTAATCCTTATTCTCTTCAAAGGCTCCCAAAAATGGAATTATGTCATCCAAACCATTATTAGTCCATTAATCTTGCAAATGGGAATGAATTTATCATTAAAAGGTAGCATAAGTTGGCAAAGATGCCAACTTATCGCTGTCCAATGAACTGCACCAAGGAGTGGAAGAAACTTCCAATCAATGAAAGAGCAGATTCAAACTTAAACACCATTATATGCTGTGTAATGAGATTGCGAAGTTCACTTTCAAATCAGATTGGGAAAATTCATGGGAAAGAAATTCTTGAAGTTGGTTGGTTACTTGTTATGAGACAGCCAGGCTGTCCAGATGGGAAAGTCTCTGTCAAACAGGATCTTTTATATTCTCTAAATGGATTCTTCCACTGTTCTATCGAGCTGGTCGGAAACTTATTCTTGTTATGATATAGCAAGCAGGCTGATTATTCAGGTGAGGAGGTCCATGTTATCTCTAAATGTATTATTCAGTCGTCCTGTCTGAGAGATAAATGGACAGTAATAAATAACCACTATGGTTCAGCAGCTGATACAAATTATCAGAATGAAAAATATTTGAGAAACTTTTAGTGATTTTATCAGTTCATGAAGAGGAAAGAGCTAGTTCTCAATATTGAGTTAAGAAGCCAAAAAGAACTGGCTAAGAATCTGAACAAGAAATCTTGAGCTATCTAAGTCATGAAAGCAACAACTATGGGCAAGCTAGAAAATGATGAGAGCTCAAGAATGAATTTAATTTTTTTTGTCCCTTTACTTTATCTCTTTCTCTGATTTTCGAATGGTTATGTAGTGAATGAGAATCTTTTTCAGTTTAGTTGATCACTCTGACAACTCAATTTTAATTGCTAATGTAAGTATCTTACTTTGAGAAGTTTTGAATCAACAAGCTCTTCCTTATAGTCTTGTACTGTTATCTAATAATTGATATTTAGGCATTTTTTTTCTAGATTGTTGGTTATTGTCGAGGAATTATGAAATGGCTCATCGGTATGCATACTTATTTTCGAAGTTGTTGATTAGTCAAGGCCATACGTTTTGTGGATGTAAAGTTTCATATTGATGAAAGGAAGCCCTTGTGAGAAAGTAAAAAAATAATTGTTTTAGAAGGTAATGAAGTAGTGAAACGTGGATTTGGATGGCTATTGATATCTGGAAAGATGGCAGTGTTTCATCCTGTGGATAGAATATTGATTAATTTGATATTATATTGCAGGTGAAGGTCCTTTTTCTTATTCTGATGGATCTTTGTCGCCGGACTGCTGGTTTGGTACATCCGCTGCCAGTTTCTCAGGTTGGGAGCAACAACAT</genome_strand>
        <mrna_strand>CCGATAAGTATCAACACTGGCACTTTCCCTGGAACTCCGGCTGTTAGGCTTATAGGGGACTGCCATTTTCTTCATCGGCTATGTCAACTTCTGCATTTCTGTTTTTTCTTCCGTGGAACACAATTACCGCGTTTTATGGGGGCTGCTCAAAGGAATGCTGATTCTTCAATGCAAAAACCTCAGTCCGGTATTCCAGGCAAAACAGAAGATTCCAACTCTGGTGCAAAACCAACGCTAGGCGGTCAGGTTGGAACAGGAGCAAAGGGGTCTGAAGAAGGTCCATCTAAACGGTCTAGGATTGGTTCTGGAAATGCTGGTCAAGGATACACATATGAGGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGTCCTTTTTCTTATTCTGATGGATCTTTGTCGCCGGACTGCTGGTTTGGTACATCCGCTGCCAGTTTCTCAGGGTGGGAGCAACAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555847" ref_strand="+" ref_description="SGN-E555847 [cTSD-1-J21]">
      <seq>gttgctttgaacagtgtcattgctgtactggatgcagatttccattccctcccttcaactcagcatagacagcagtatggaccgagtctagacaggataaaatgcaggcttctagaaggtacaaatgctcaagaagtccgggcaatggtgcttgacatgcaagcaagattgttgctagatatgcttggcaagggaatcgaatcagctttaacaaacccatcagcattggttccggagccatggcaagcttctagcgagacactgtttggtattgatcctgaggcgatggctgttgaaccatcacttgtgccaagtatccaggcatatgtagatgcgatactggatctggcgtctcatttcatcacgcgcttacggcgctatgcaagtttctgccgtacattggctagtcatgctgttactgcaagtacaggtgggagtaggagtatggtgactagtcctactcaaagtgcttcatctcctgccacttcccagggtgctcagggtggtactgcaagttctgctgggagcactcatatgcaagcttgggtacaaagagctatagcaaaaattagcagtacagccgacagtgttcctagttcagccccaaaccccatcactggtccttctacatttatgccgataagtatcaacactggcactttccctggaactccggctgttaggcttataggggactgccattttcttcatcggctatgtcaacttctgcatttctgttttttcttccgtgggacacaattaccgcgttttattgggggctgctcaaaggaatgctgattcttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="70594" stop="68200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70294" g_stop="70211" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70210" i_stop="69485" i_length="726">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69484" g_stop="69248" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="321" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69247" i_stop="69091" i_length="157">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69090" g_stop="68919" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="493" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68918" i_stop="68813" i_length="106">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.815" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68812" g_stop="68500" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="807" r_length="314" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E555847" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70294" e_stop="70211"/>
          <exon e_start="69484" e_stop="69248"/>
          <exon e_start="69090" e_stop="68919"/>
          <exon e_start="68812" e_stop="68500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTTTGAACAGTGTCATTGCTGTACTGGATGCAGATTTCCATTCCCTCCCTTCAACTCAGCATAGACAGCAGTATGGACCGGTGTGTTTCTTTTATTTAATTCCAACTTCAAGCCTATCATTTGCATATGAGGAAATTATCATCCTGGTGTATCATTGAAGTACATGTTGTAAATACTGACCAGTACAGTTTTAGTACTGACTTTTGAGGAATAGACAAAGTTACCAATTTCAAAAAAAATAAAATATATCATCCTGGTGTATCAAATTGGATGGATACTTGTGACAATATAGCAATTACGTGAAGATATCGAATGTTGCATTTCACATTCCGCTCATCTTTTTTTTGCTTTGCTTTCTCTATATGAGTTTTGCTCTTGCATGATATCAGTCTGACTTTGGAGAAGATAATGGAGCAGTGTATGGATTACACTTCTAATTATTTTCCATCTTGAGAGCATGAGGATCAAATTTGCTTAATTTAACATATGAATTACAACACTTCCTCTATTACGATAGATGGCAATGTAACTAATTTTTGTTTCTCTCGATCATATACTAGTCTAATAGTGTGTTGTGTGGAAGATTGTGTCTTTGTGTTTGTGTCATGTATGTACTTATCAGATATTGGATCATGTTTTTCTATCATTCAATCTGTGCATGCATACATACATACAAGTAGTTCTTGAATTTTAAAACTGTGTGTTTATTTCATGATTTCATCAAAGTTCATTCTCAGGAATGTATTATGAGTTCTCCTGTTCTTGGATATCGTTGAATGTTGATATATCTCATCCGTATAATGCAGAGTCTAGACAGGATAAAATGCAGGCTTCTAGAAGGTACAAATGCTCAAGAAGTCCGGGCAATGGTGCTTGACATGCAAGCAAGATTGTTGCTAGATATGCTTGGCAAGGGAATCGAATCAGCTTTAACAAACCCATCAGCATTGGTTCCGGAGCCATGGCAAGCTTCTAGCGAGACACTGTTTGGTATTGATCCTGAGGCGATGGCTGTTGAACCATCACTTGTGCCAAGTATCCAGGTATTTTCTTACACTTGTCCGATGTACCTCCACCCACTGGTTTCCCGCTATTGGATAGATGTCTTGGTGATCATCACCTTTCTGTATGTGTAACCAAGGACGTCTATTTCTGCGTTCAGTGTTTGAGTTTCTCAAGTATTGGGATGATTTAATTCAGGCATATGTAGATGCGATACTGGATCTGGCGTCTCATTTCATCACGCGCTTACGGCGCTATGCAAGTTTCTGCCGTACATTGGCTAGTCATGCTGTTACTGCAGGTACAGGTGGGAGTAGGAGTATGGTGACTAGTCCTACTCAAAGTGCTTCATCTCCTGCCACTTCCCAGGGTTAGTTTGTTTGCTTCTCTGTTATGTGCTGTTAAGGTATATCCCTTCCTGGATCCAAGAATCCACATCTCTTCTCTGAGCTAAACCAGGGGCCTCTTCTTTTCAGGTGCTCAGGGTGGTACTGCAAGTTCTGCTGGGAGCACTCAGATGCAAGCTTGGGTACAAGGAGCTATAGCAAAAATTAGCAGTACAGCCGACAGTGTTCCTAGTTCAGCCCCAAACCCCATCACTGGTCCTTCTACATTTATGCCGATAAGTATCAACACTGGCACTTTCCCTGGAACTCCGGCTGTTAGGCTTATAGGGGACTGCCATTTTCTTCATCGGCTATGTCAACTTCTGCATTTCTGTTTTTTCTTCCGTGGAACACAATTACCGCGTTTTA-TGGGGGCTGCTCAAAGGAATGCTGATTCTTCAAT</genome_strand>
        <mrna_strand>GTTGCTTTGAACAGTGTCATTGCTGTACTGGATGCAGATTTCCATTCCCTCCCTTCAACTCAGCATAGACAGCAGTATGGACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCTAGACAGGATAAAATGCAGGCTTCTAGAAGGTACAAATGCTCAAGAAGTCCGGGCAATGGTGCTTGACATGCAAGCAAGATTGTTGCTAGATATGCTTGGCAAGGGAATCGAATCAGCTTTAACAAACCCATCAGCATTGGTTCCGGAGCCATGGCAAGCTTCTAGCGAGACACTGTTTGGTATTGATCCTGAGGCGATGGCTGTTGAACCATCACTTGTGCCAAGTATCCAG.............................................................................................................................................................GCATATGTAGATGCGATACTGGATCTGGCGTCTCATTTCATCACGCGCTTACGGCGCTATGCAAGTTTCTGCCGTACATTGGCTAGTCATGCTGTTACTGCAAGTACAGGTGGGAGTAGGAGTATGGTGACTAGTCCTACTCAAAGTGCTTCATCTCCTGCCACTTCCCAGG..........................................................................................................GTGCTCAGGGTGGTACTGCAAGTTCTGCTGGGAGCACTCATATGCAAGCTTGGGTACAAAGAGCTATAGCAAAAATTAGCAGTACAGCCGACAGTGTTCCTAGTTCAGCCCCAAACCCCATCACTGGTCCTTCTACATTTATGCCGATAAGTATCAACACTGGCACTTTCCCTGGAACTCCGGCTGTTAGGCTTATAGGGGACTGCCATTTTCTTCATCGGCTATGTCAACTTCTGCATTTCTGTTTTTTCTTCCGTGGGACACAATTACCGCGTTTTATTGGGGGCTGCTCAAAGGAATGCTGATTCTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301351" ref_strand="+" ref_description="SGN-E301351 [cLEW-24-D9]">
      <seq>aataggttaactatggatatgatgccggaaacagaccaattttatatcacccttcaatgtgaattagcaaaagcgatgtctccttccatactatggataccaaaaattcattatctggatttgaatgagtctatgacaggatttatgattgtttgctatttgatgtgttaataggaatcctgactaaagagttctgaaataaaaaatttcattcctgttctacttgtgaggtaatcagtaatcagtctctgtactgatcaccaggttcaagtaatgtgccccccaccttttgcaatatatggattctaaagaattgaaatgtcatatcttcaatttagagttgcatacatgttccttttatagcactaatttttttgcttaatcgttggtcattctgctgcaagatctttacttgggtttcatggactgcaaaataaaatttttatagcagttttagtttgttgaaattcttgtgtagtttggagggtattacctgtccttgcatgcttgctttccttgtttttcgtctcttctgctttgattctgaataattgaagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="71599" stop="70440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71299" g_stop="70740" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E301351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71299" e_stop="70740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGGTTAACTATGGATATGATGCCGGAAACAGACCAATTTTATATCACCCTTCAATGTGAATTAGCAAAAGCGATGTCTCCTTCCATACTATGGATACCAAAAATTCATTATCTGGATTTGAATGAGTCTATGACAGGATTTATGATTGTTTGCTATTTGATGTGTTAATAGGAATCCTGACTAAAGAGTTCTGAAATAAAAAATTTCATTCCTGTTCTACTTGTGAGGTAATCAGTAATCAGTCTCTGTACTGATCACCAGGTTCAAGTAATGTGCCCCCCACCTTTTGCAATATATGGATTCTAAAGAATTGAAATGTCATATCTTCAATTTAGAGTTGCATACATGTTCCTTTTATAGCACTAATTTTTTTGCTTAATCGTTGGTCATTCTGCTGCAAGATCTTTACTTGGGTTTCATGGACTGCAAAATAAAATTTTTATAGCAGTTTTAGTTTGTTGAAATTCTTGTGTAGTTTGGAGGGTATTACCTGTCCTTGCATGCTTGCTTTCCTTGTTTTTCGTCTCTTCTGCTTTGATTCTGAATAATTGAAGACA</genome_strand>
        <mrna_strand>AATAGGTTAACTATGGATATGATGCCGGAAACAGACCAATTTTATATCACCCTTCAATGTGAATTAGCAAAAGCGATGTCTCCTTCCATACTATGGATACCAAAAATTCATTATCTGGATTTGAATGAGTCTATGACAGGATTTATGATTGTTTGCTATTTGATGTGTTAATAGGAATCCTGACTAAAGAGTTCTGAAATAAAAAATTTCATTCCTGTTCTACTTGTGAGGTAATCAGTAATCAGTCTCTGTACTGATCACCAGGTTCAAGTAATGTGCCCCCCACCTTTTGCAATATATGGATTCTAAAGAATTGAAATGTCATATCTTCAATTTAGAGTTGCATACATGTTCCTTTTATAGCACTAATTTTTTTGCTTAATCGTTGGTCATTCTGCTGCAAGATCTTTACTTGGGTTTCATGGACTGCAAAATAAAATTTTTATAGCAGTTTTAGTTTGTTGAAATTCTTGTGTAGTTTGGAGGGTATTACCTGTCCTTGCATGCTTGCTTTCCTTGTTTTTCGTCTCTTCTGCTTTGATTCTGAATAATTGAAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735795" ref_strand="+" ref_description="SGN-E735795 [LC03AC09]">
      <seq>atgctctgtcttctcatcagggtctgttcagctccactggtctcaatggccacctaatcagaatggtgcaccatcaaagtggttttgcacaagcaaagggctattgggagcggggcctagtggcatcatggctgctgatgctatcataacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="73316" stop="72565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73016" g_stop="72865" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E735795" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>152</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73016" e_stop="72865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTCTGTCTTCTCATCAGGGTCTGTTCAGCTCCACTGGTCTCAATGGCCACCTAATCAGAATGGTGCACCATCAAAGTGGTTTTGCACAAGCAAAGGGCTATTGGGAGCGGGGCCTAGTGGCATCATGGCTGCTGATGCTATCATAACAG</genome_strand>
        <mrna_strand>ATGCTCTGTCTTCTCATCAGGGTCTGTTCAGCTCCACTGGTCTCAATGGCCACCTAATCAGAATGGTGCACCATCAAAGTGGTTTTGCACAAGCAAAGGGCTATTGGGAGCGGGGCCTAGTGGCATCATGGCTGCTGATGCTATCATAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703989" ref_strand="+" ref_description="SGN-E703989 [FA23AB10]">
      <seq>aaagatactgaagtggagaaggaggaagagtcttcttctgtgattaccaattctctagaaccttctactaataaggttcacgagaaaccggatatcattattgaagacgacgacgacgatcatcctgctgcaattgtggctatggtgacggagaaggaggtctcttctgttgacgatgatcccatggatgaggatactgtcaatcctgctgtcgtcttttgtattaggctcaaacaacctaggtcaaatttgcttcataaaatgagtgttcctgaactttgccgcaatttcagtgctgttgcttggtgtggaaagctaaatgcaatagcttgtgcgtctgaaacatgtgcaaggattccaagttcaaatgcaaatccacctttctggatccctatacatatcgtcatcccagagcgaccaactgagtgcactgtgttcaatgttatagcagactcccctcgtgattccgtccaattcattgaatggtctccaacttcgtgtccacgtgcactactcatagctaactttcatgggagaataacaatctggactcagccttcacaaggttcagctaatctggtacgagatgctagttgttggcagcgagattaccaatggcatcaagatattgcagttgttacaaagtggttatcaggagtttctccgtataggtggctttcaacaaaaacgggcggttccgctaagtcaacatttgaggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="81730" stop="74794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81430" g_stop="81138" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81137" i_stop="77241" i_length="3897">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77240" g_stop="77172" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="362" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77171" i_stop="76999" i_length="173">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76998" g_stop="76910" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="451" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76909" i_stop="75889" i_length="1021">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.791" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75888" g_stop="75776" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="564" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75775" i_stop="75330" i_length="446">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75329" g_stop="75228" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="666" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75227" i_stop="75150" i_length="78">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75149" g_stop="75094" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="722" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E703989" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81430" e_stop="81138"/>
          <exon e_start="77240" e_stop="77172"/>
          <exon e_start="76998" e_stop="76910"/>
          <exon e_start="75888" e_stop="75776"/>
          <exon e_start="75329" e_stop="75228"/>
          <exon e_start="75149" e_stop="75094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATACTGAAGTGGAGAAGGAGGAAGAGTCTTCTTCTGTGATTACCAATTCTCTAGAACCTTCTACTAATAAGGTTCACGAGAAACCGGATATCATTATTGAAGACGACGACGACGATCATCCTGCTGCAATTGTGGCTATGGTGACGGAGAAGGAGGTCTCTTCTGTTGACGATGATCCCATGGATGAGGATACTGTCAATCCTGCTGTCGTCTTTTGTATTAGGCTCAAACAACCTAGGTCAAATTTGCTTCATAAAATGAGTGTTCCTGAACTTTGCCGCAATTTCAGGTGATTTTTTAAAATTTTGTTTATGCTACATCTCAATTCTGGCTACATGACTTAGAAGATGATATCAATATTTTTTTTCCTTATAACTAAAGTAAGGATACGATCGAATTTAAAAAAAGCAGAAAAAGTGAGATTAGTCTGTTAGAGGTTTACTTAGTTATGCTGGAAGTGGAGAACTTGTTGGAACTTCGCAGTTTAACTGTTGAGGCGGTGGAAGTCACTGAATTGAGTTCTAAAGTTGCTGTACGTTGAGCTCACTGCCTCAAGTGATAGCTAGTTGCTGATCGAAGTGTTGACTTGTTAGTCCGATCATTTGCCGACCAATACTATTATTAGAACATTCTGCTCCCAATATAATCATCACTAAAGTTTAACTTTCTAGATATATTATAAGGATTTGGGCCCTATAATTTGTTCATACATGCAGTAGTTCACCTATGCAAAATGAATTAGTCAAAAATATGTTATTTTTAATGAAGTTTCAGTGGAATATGGAAGATATGAGAAGAAAAACAGAAACTGCAGTCTCATTATGGTCTTACAGAACGACAGAGGGAAAGTTCAATGTTTTTTTTAGTTTCAGTATTTTTGTTCCTAGAGTTATTTCACTTTCTAGATAGAGAGAGAATCATCCTGGTAAGTGTAGTTGCATGCTAATCTGAGAAATTTCAAATTTGCTTTGCCATTGCGTCTTATGCCCTCAATGGGGTAATCATCTTCTTTTTTCTAATAAGTTACATAAGACGATAGGTTAAGTACCTTTAACAAGAGACCAGAGGGGTTTACTATGTTAGAGACTGAAGTACTTCCTCATTTGTTCCTAAATCTTAATAGAGGAGTTAGTTTTAATCCATCCAGTGAAGGGAACTTTAGAGAATAAGACAGAAGTTTCTCTATTTATCTTGCTACATTGTAGAAAGTGGTGAAGATTTTTTTTCTGAAACTGGTAACTCTAGTCTATATATCCACAGGTATACTAAAACAAAAGTGTAGTTCCCCTTCAAAAGTTTTACAACTTACAGAATAAAACAGTCTTAGTCGAAAACTGCTGCTTATAAACAATCTAGCACATCAAAGATATCTTCCGTCCTAGTTAATATATCTTGTTTACATCAAAAATAGAAAAGAGCTGAGCAGTCCATCTTGATCTTCTGTAAGCTATTCTGCCAATTTTCAAAACTCCTGCTGTTTCTCTCTTTCCAGATTGTCCACCAAATACATGCCGGGACAAGTTTCCATCTCTTCTCCTTGTCAGAAGCATTGCCATCTCTATTCCAGCTGCTCAGGACTCCTTTAATGCTCCCTGGTTTCACCCATCTGATTCCCTTTAGACAGATGCACATTCATTCTCCATAATTGTTATGGCCATGTACAATGCAAAAAAAGATGGTTAATTGTCCCAGCATGTTCTCCACATAAAGTACATCTAGAAGCCAACTGATAGCCTCTTGTCTTTAGATTTTCATGAGTCAAAACTGCTTCTTTTGTTAATAGCCACATGAAGTAGTTTACTCTGTAGGGTACTTTTGGTTTCCAGATGATCTTCCATGGCCATTCCATCTCCTGTCCAGCATTCTTGTTGAGTTTCTTATACACTGAATTTACTGAGAATTGACCTTTGGTATCATTTTGCCAAACTAATAAGTCCTTCTTATCAGTGAGGTTGCTGAAAGACCTTACTGAATCTTGAAATTCTGCCACTTAGTCAATCTCCCAATCCTGAAGGTTCCTCCTTAAGAACAAATCCCATCTTTGTCCAGTCCACATTGTAGCCACAGTGGCCTATTGATGTTGGCATAAAGTAAACAATTCAGGATGCAACTGTTTCATAGGGACAGATCCATTCCACTTATCCTCCCAGAAGGGTGTCTTTGACCCATCTCCCACTTCTACCTTGGTTCTGTGATATAGCACTGGCCATAGATTTCTGATTTTCCTCCATACAGTGCATTTATATGAAGTACTTATCATTTGTCATCCACATATTTTCCATGCCATATTTTGGTGACCTCTTTCCAGAGCATGTTATCTTCATTTGCAAACTTCCACAACCACTTCATCATTAGTCTCTGGTTTTGATTCCTTAGATTTCTTATGCCTAGGCCTCCTGTGTTTTTACTCACCATCAGGTCTTTCCATTTAACAGGAAAAAAAGTATCATTCTCAAAAAAAAAAAAGAAAGATGAAACTTCTTCTTATCTTCATTGCCTTGCCATAAGAAATTTCTTCTAAGAGCATCAATGCTATTAGATACATTGGCAGGCATAAGGAAGACTGTCATCATATAAGAGGGTAATGCATCCATCACACTGTAAAATCACTGTTAATTAAAGTCGATCTTCCTCCCAAGGACAAGTACTAACTCTTCCAGTTAATGAGTCTCTTTTCACATTTCTCATGTACCCCATTCCATATGTCTCTGGACTTGCTTTTAGCTCCCAAAGGCATACCTAGGTAAGTAGTTGGAAGCTCCCCAACCTTGCCTCCTAGTGTTCTGGTCAAAACTTCTGTATTAAGCACACCATTGATAGGATAGATGAAGTTTTTCCCCCAGTTAATGTGGAGACTAGATACAGCTTCAAAAATGACAAAAATGACCCTCAAAATCAGTATTTGTTTTGTCTCAGCTCTACAAAATACCAATGTGTCATCTGCATATTATAGATGAGTTATCTCTAAACTAGAAAGTTCTCCTGCTTGGAACCCCTTGATCCATCCTTTTCCCTTTGCTGTATTAATGAGGTTACTCATTCCTTCCATAGCTTAGATGAATAAAAATGGGGAAAGAGGACCCTTTGTCTCGGGAAAAAGCCAGTGGGTACTCTATTACAAGTATAGAGAACCTGACAGTGCCGATACAATGTTTTATCCATCTTATCGGGCCCCAAAACCCATACTTCCCAACATTTGTATAAGAAAGTCCCAGTTTAAGAAGTCATAGGCTTTTTGTATGTCCAGCGTGCATGCAATTCCTGGCTTATTACTCCTTTGTCTGGTCTCTATGCATTCATTAGCTATCAAAATGGCATCCATAATTTGTCTGCCCTTGATAAAAGCCATCTGATGCCTATCCACCAGGCTATGTATCACCCTCTTGAGTCTCTCTACTAGAAGCTTTGAAGATTCCTTGTATAACATTCCTGTGCACATTCACTGTATAAATGTTTAAAACATACTTTTTGTCAAGATAATCTTCCAGACATGTCTGATTTTTCTTCTTGATAAAGATTCCAACCTGTCTAAAATTGTTTAGCAACCTATCAGTTTCAAAAGAGAACTCTCATCTCCTGGATGTTCATTATGGAATGAGTATTTTGGCATAGAAGTTCTTTTTTGAAAGCATCCAAGGTTATGACCTAGTGGTCAATGAAGTGGTTGAGAGCCATGAGATCTCAGTGGAGACAAAAAAACTAGGTGATTCTTCCCATATATCTTAGTCTTGGTGGACAGAGTTACGTGGTACTTGCTGCTGGTGGGAAGTGAAAGGTATCCCGTGGAATTAGTTGAGATGCGTGAAAACTAGCCTGAACACCACGGTTATAAAAAAAGTAGTTCTCTTTTGAAAATTTCCAACTCCTATGCTGTGACTCTGCTTTGCTATGATCTGTAGAGTGTAGACTGTTCTTGACTCAGAGAACATGGAAAGGAAATCTCCTTTCATGATCTATCACACATTTATTAGTATGCATATATCCTTGAAATCACTATCAAACATGTATAAATCCTTGGTTTCACAATCAAGAACATGCTTTTGATGTTATTTCTCTCTCTTTCTCTCTCCCCTCTCTCTCTCTCTCTCACTCTTTTTCTCCTTGTTCCTCTGGCAGTTGCTTTCATCTCAAATGGATAGATATATTGTCTTTTGTACTGAGTTGCTTTTTTGAAATGTTTTTTTAGTGCTGTTGCTTGGTGTGGAAAGCTAAATGCAATAGCTTGTGCGTCTGAAACATGTGCAAGGATTCCAAGGTTAGAGCCTCGATTTCCATCACTGTAAATTACTTCAGCACTCTGTACTTTACTGCACATGGATATTATAACTGTCCAGTGTTTCTGCTAATTCGATGTGGTCAAATTCTGTAGATATCACTTTATATCTTTCGCTCAACTGTTTTATTCTTATTACTTCTACCTTTTTGTAGTTCAAATGCAAATCCACCTTTCTGGATCCCTATACATATCGTCATCCCAGAGCGACCAACTGAGTGCACTGTGTTCAATGTTATAGCAGGTATTGTAGAATGACTTGACAGTGGCCATGGATTTTTCTTCCTTTTGCAAACATGTTTAGAACCTAACAAACGAGGCCCTCTCCTTTAGGTCCAGCAGTTGTTTATGCATGAGATTTTCTGTTTCCTCCTCTGATTTTCTCGCACATAGAAGGAAAATCCGAGATATTTGTGAAATGGTGAACAAATGAAAACTGAACAGACGGTGCAATGCAAAGCAGTGGATAAACAACTCTTCATGGAGGAACAATTAATTAAGTTCTCAACTTTTTGAGTAATATGTGACGGACCTTCAGTGTATTAAAGAATTCTTAATGTTTGTTGTGACATTTAATTTTTCCGACCATCATATATGGGATGCTAGATTGCTTATCAGTGTTTGTACTAAAATATCTTGGAGTGCCCATTTTGAAGTGACAATTTGAATTGTCTAATTATCATAAATATTTGGTGAGATTGCATCTGGACAAAATGATCCTTCTAGTTTCCACGCAAAGCCCGAATCAAGCTTTGACCTTCTAGCATAATATTAAAAACTATTCATTGAAATTGGAGTTGATTAATTTTTACATGATTGCAGTGGATTAGAAAATAGTTCGAGTAGCTTAAAAACACTTTTACATGATTGCAGTGGATTAGAAAATAGTTCGAGTAGCTTAAAAACACCCTCTTTTCAAGAGGACTTAGTTTGTTTTGATTTCAAATGCGTAAGAGTGCTTTTTTTTCCTTTTTAGATAACTAAATAGGCCGTAAAGCTCTGGTCCATTGTGTTGTTGTTGCACTGAACTGAATTTTGTCCGAAGAGATGCTCACTTTTAACTCTTGTGCATGATTGATTACCGCCAGGTGGTTTATTTTGATATTTCATCTTTTACATTTTACATTCTACAGACTCCCCTTGTGATGTTGTTGCACTGAACTGGCTTTGTCCGAAGAGATGCTCACTTTTAACTCTTGTGCATGATTGATTACCGCCAGGTGGTTTATTTTGATACTTCATCTTTTGCATTTTACATTCTACAGACTCCCCTCGTGATTCCGTCCAATTCATTGAATGGTCTCCAACTTCGTGTCCACGTGCACTACTCATAGCTAACTTTCATGGGAGAATAACAATCTGGACTCAGCCTTCACAAGTAAGCTGTTTTTTCTGGAGTTTACTATAGTGCATTTTGTTGTCCTTTTCACTTTTTGTTTCATGTATTTTTGGTTACTTGCACGTTCTTGGTGAGGGGTTTCTTACCTTTTCCATGTCACATCTGCTAGCCAACATCTTGATTGAGTGTTGGTTTTTCTCATATGTTACAAATTCAAGATTAATTCTGCCTTGTTGCTTCAAAAACTATTCTTACTTACTGCACTTAAGGGTGTGGTCCAATGGTCAATGAAGTGGGTTGGTCGTAGACTCAGATTCCAACAAAGAACACTAGGTGATTTCTTCCTATCTGTCCAAGCCTTGGTGGATAGCTGGTGAGAGGTAGGAGGTACCCTGTGGATAGAGTTACCCAGTTCCTGGTCCTGACACCACACTTTTTTTTTTAAAAAGAACTATTCTTACTTAAAATGTATGCTTGGTACACAGGGTTCAGCTAATCTGGTACGAGATGCTAGTTGTTGGCAGCGAGATTACGAATGGCATCAAGATATTGCAGTTGTTACAAAGTGGTTATCAGGAGTTTCTCCGGTATGTAATTGTTATGGTTTTGTGAAACTTGCATAATTCGATCGGTTCATTTCTTGATTCTTTTATACCTAAGTTTAGTATAGGTGGCTTTCAACAAGAACGGGCGGTTCCGCTAAGTCAACATTTGAGGAGAA</genome_strand>
        <mrna_strand>AAAGATACTGAAGTGGAGAAGGAGGAAGAGTCTTCTTCTGTGATTACCAATTCTCTAGAACCTTCTACTAATAAGGTTCACGAGAAACCGGATATCATTATTGAAGACGACGACGACGATCATCCTGCTGCAATTGTGGCTATGGTGACGGAGAAGGAGGTCTCTTCTGTTGACGATGATCCCATGGATGAGGATACTGTCAATCCTGCTGTCGTCTTTTGTATTAGGCTCAAACAACCTAGGTCAAATTTGCTTCATAAAATGAGTGTTCCTGAACTTTGCCGCAATTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTGCTTGGTGTGGAAAGCTAAATGCAATAGCTTGTGCGTCTGAAACATGTGCAAGGATTCCAAG.............................................................................................................................................................................TTCAAATGCAAATCCACCTTTCTGGATCCCTATACATATCGTCATCCCAGAGCGACCAACTGAGTGCACTGTGTTCAATGTTATAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCCCTCGTGATTCCGTCCAATTCATTGAATGGTCTCCAACTTCGTGTCCACGTGCACTACTCATAGCTAACTTTCATGGGAGAATAACAATCTGGACTCAGCCTTCACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGCTAATCTGGTACGAGATGCTAGTTGTTGGCAGCGAGATTACCAATGGCATCAAGATATTGCAGTTGTTACAAAGTGGTTATCAGGAGTTTCTCCG..............................................................................TATAGGTGGCTTTCAACAAAAACGGGCGGTTCCGCTAAGTCAACATTTGAGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347552" ref_strand="+" ref_description="SGN-E347552 [cTOF-26-A4]">
      <seq>ttcaaatgaacaatcaacaaccacctgttgctaaagatactgaagtggagaaggaggaagagtcttcttctgtgattaccaattctctagaaccttctactaataaggttcacgagaaaccggatatcattattgaagacgacgacgacgatcatcctgctgcaattgtggctatggtgacggagaaggaggtctcttctgttgacgatgatcccatggatgaggatactgtcaatcctgctgtcgtcttttgtattaggctcaaacaacctaggtcaaatttgcttcataaaatgagtgttcctgaactttgccgcaatttcaggtgattttttaaaattttgtttatgctacatctcaattctggctacatgacttagaagatgatatcaatattttttttccttataactaaagtaaggatacgatcgaatttaaaaaaagcagaaaaagtgagattagtctgttagaggtttacttagttatgctggaagtggagaacttgttggaacttcgcagtttaactgttgaggcggtggaagtcactgaattgagttctaaagttgctgtacgttgagctcactgcctcaagtgatagctagntgctgatcgaagtgttgacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="81762" stop="80537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81462" g_stop="80837" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E347552" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81462" e_stop="80837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATGAACAATCAACAACCACCTGTTGCTAAAGATACTGAAGTGGAGAAGGAGGAAGAGTCTTCTTCTGTGATTACCAATTCTCTAGAACCTTCTACTAATAAGGTTCACGAGAAACCGGATATCATTATTGAAGACGACGACGACGATCATCCTGCTGCAATTGTGGCTATGGTGACGGAGAAGGAGGTCTCTTCTGTTGACGATGATCCCATGGATGAGGATACTGTCAATCCTGCTGTCGTCTTTTGTATTAGGCTCAAACAACCTAGGTCAAATTTGCTTCATAAAATGAGTGTTCCTGAACTTTGCCGCAATTTCAGGTGATTTTTTAAAATTTTGTTTATGCTACATCTCAATTCTGGCTACATGACTTAGAAGATGATATCAATATTTTTTTTCCTTATAACTAAAGTAAGGATACGATCGAATTTAAAAAAAGCAGAAAAAGTGAGATTAGTCTGTTAGAGGTTTACTTAGTTATGCTGGAAGTGGAGAACTTGTTGGAACTTCGCAGTTTAACTGTTGAGGCGGTGGAAGTCACTGAATTGAGTTCTAAAGTTGCTGTACGTTGAGCTCACTGCCTCAAGTGATAGCTAGTTGCTGATCGAAGTGTTGACTTGT</genome_strand>
        <mrna_strand>TTCAAATGAACAATCAACAACCACCTGTTGCTAAAGATACTGAAGTGGAGAAGGAGGAAGAGTCTTCTTCTGTGATTACCAATTCTCTAGAACCTTCTACTAATAAGGTTCACGAGAAACCGGATATCATTATTGAAGACGACGACGACGATCATCCTGCTGCAATTGTGGCTATGGTGACGGAGAAGGAGGTCTCTTCTGTTGACGATGATCCCATGGATGAGGATACTGTCAATCCTGCTGTCGTCTTTTGTATTAGGCTCAAACAACCTAGGTCAAATTTGCTTCATAAAATGAGTGTTCCTGAACTTTGCCGCAATTTCAGGTGATTTTTTAAAATTTTGTTTATGCTACATCTCAATTCTGGCTACATGACTTAGAAGATGATATCAATATTTTTTTTCCTTATAACTAAAGTAAGGATACGATCGAATTTAAAAAAAGCAGAAAAAGTGAGATTAGTCTGTTAGAGGTTTACTTAGTTATGCTGGAAGTGGAGAACTTGTTGGAACTTCGCAGTTTAACTGTTGAGGCGGTGGAAGTCACTGAATTGAGTTCTAAAGTTGCTGTACGTTGAGCTCACTGCCTCAAGTGATAGCTAGNTGCTGATCGAAGTGTTGACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201337" ref_strand="+" ref_description="SGN-E201337 [cLEC-4-C22]">
      <seq>gtgtattggtggtgaaggctaacatttcatttactcatcaaaaggcactatcaattgatttagacacgctaattgacatgagttgttgcttctttggcgaccggaaaaagggtcatgatctcgttcaccatgatacaagagatgcaggaggtgactccattgcaagcacaaagaatttttcatttaatgaattaagattagcaaccaacaacttccatcaaattaataaaataaggcgaggcggttttggcacagtatacaagggaactctaaaacaaggaaaagatgttgctgtgaagacactagcagcataatcaaggcagggtttgcgggagtttttgacagaaattgagacaatatcaaatgtcaaacatccaaatctagttgagataattggatgctgtgctgatggaaataaccggattttggtctatgaatatttagaaaataaaagccttgatcgggcactgtttggttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="89719" stop="91236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90019" g_stop="90168" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90169" i_stop="90352" i_length="184">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90353" g_stop="90465" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="263" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90466" i_stop="90723" i_length="258">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90724" g_stop="90934" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="474" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90935" i_stop="91015" i_length="81">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91016" g_stop="91021" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="480" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E201337" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90019" e_stop="90168"/>
          <exon e_start="90353" e_stop="90465"/>
          <exon e_start="90724" e_stop="90934"/>
          <exon e_start="91016" e_stop="91021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAGGTTAGTGGGAACTGGGATGTTTTTCTGTTTTTTCAGAGGACTTGTTTGCAACTTTATGCCATTGGAGATGCATTGCGCATTTGGTTGTAGATCATCTTCAACCTAGGCATAAGTAATGCCAGTGCAAATGCTGTCTTGAGTAAATTCAATTCATATACCATAACTATCTTTATATATCTGGCAGGTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAGGTACAGCTCTACTCAACGAATACGTCTCATGCTTTTTCATGCAGCAGTTTTGTGCATTGGACAACTTATTTTTGTGTCTTTTGCATAGTTCTGTTTAAAGTGTTACATTCTTGGATGTTATGGTTTAGTTCAAGTTATAGTAGTAGTAGGCAGATTTTTGAAATTCTCAGGAAATCTGCATTACTAACTTCATATTTTGTTATTAGATTTTCATTATTATCTCCCCTTTAATGGAGTTGTGTAATACGGTAATTGCAGGGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTGGTAATGGCCGAACTTCTGGTAAAATAAAGGATTAACTTGAGAATTATGGAATGGCTGATAATGGTATTTTTTACTTTGCAGGTTCAA</genome_strand>
        <mrna_strand>GTGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAG........................................................................................................................................................................................GTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAAGGCGAGGCGGTTTTGGCACAGTATACAAG..................................................................................................................................................................................................................................................................GGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCATAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAAAAGCCTTGATCGGGCACTGTTTG.................................................................................GTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379303" ref_strand="+" ref_description="SGN-E379303 [TUS-1-E3]">
      <seq>aagcagtgtattggtggtgaaggctaacatttcatttactcatcaaaaggcactatcaattgatttagacacgctaattgacatgagttgttgcttctttggcgaccggaaaaagggtcatgatctcgttcaccatgatacaagagatgcaggaggtgactccattgcaagcacaaagaatttttcatttaatgaattaagattagcaaccaacaacttccatcaaattaataaaatagggcgaggcggttttggcacagtatacaagggaactctaaaacaaggaaaagatgttgctgtgaagacactagcagcagaatcaaggcagggtttgcgggagtttttgacagaaattgagacaatatcaaatgtcaaacatccaaatctagttgagataattggatgctgtgctgatggaaataaccggattttggtctatgaatatttagaaaatagaagccttgatcgggcactgtttggttcaaggactagtattaagttagaatgggaaaaaggactactatttgcttgggtactgctcgaggtcttgcatatctacatgaagaactagtgccacatatagtgcacagggatataaaagctagtaatattctgcttgacagggatatacaccaaaaattggagattttgggcttgctaaacttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="89717" stop="91507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90020" g_stop="90168" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="155" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90169" i_stop="90352" i_length="184">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90353" g_stop="90465" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="268" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90466" i_stop="90723" i_length="258">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90724" g_stop="90934" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="479" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90935" i_stop="91015" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91016" g_stop="91207" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="669" r_length="190" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E379303" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90020" e_stop="90168"/>
          <exon e_start="90353" e_stop="90465"/>
          <exon e_start="90724" e_stop="90934"/>
          <exon e_start="91016" e_stop="91207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAGGTTAGTGGGAACTGGGATGTTTTTCTGTTTTTTCAGAGGACTTGTTTGCAACTTTATGCCATTGGAGATGCATTGCGCATTTGGTTGTAGATCATCTTCAACCTAGGCATAAGTAATGCCAGTGCAAATGCTGTCTTGAGTAAATTCAATTCATATACCATAACTATCTTTATATATCTGGCAGGTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAGGTACAGCTCTACTCAACGAATACGTCTCATGCTTTTTCATGCAGCAGTTTTGTGCATTGGACAACTTATTTTTGTGTCTTTTGCATAGTTCTGTTTAAAGTGTTACATTCTTGGATGTTATGGTTTAGTTCAAGTTATAGTAGTAGTAGGCAGATTTTTGAAATTCTCAGGAAATCTGCATTACTAACTTCATATTTTGTTATTAGATTTTCATTATTATCTCCCCTTTAATGGAGTTGTGTAATACGGTAATTGCAGGGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTGGTAATGGCCGAACTTCTGGTAAAATAAAGGATTAACTTGAGAATTATGGAATGGCTGATAATGGTATTTTTTACTTTGCAGGTTCAAGGACTAGTATTAAGTTAGAATGGGAAAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATAAAAGCTAGTAATATTCTGCTTGACAAGGATTATACACCAAAAATTGGAGATTTTGGGCTTGCTAAACTTTTCC</genome_strand>
        <mrna_strand>TGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAG........................................................................................................................................................................................GTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAG..................................................................................................................................................................................................................................................................GGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTG.................................................................................GTTCAAGGACTAGTATTAAGTTAGAATGGG-AAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATAAAAGCTAGTAATATTCTGCTTGACAGGGA-TATACACCAAAAATTGGAGATTTTGGGCTTGCTAAACTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394852" ref_strand="+" ref_description="SGN-E394852 [TUS-43-A19]">
      <seq>aaagcagtgtattggtggtgaaggctaacatttcatttactcatcaaaaggcactatcaattgatttagacacgctaattgacatgagttgttgcttctttggcgaccggaaaaagggtcatgatctcgttcaccatgatacaagagatgcaggaggtgactccattgcaagcacaaagaatttttcatttaatgaattaagattagcaaccaacaacttccatcaaattaataaaatagggcgaggcggttttggcacagtatacaagggaactctaaaacaaggaaaagatgttgctgtgaagacactagcagcagaatcaaggcagggtttgcgggagtttttgacagaaattgagacaatatcaaatgtcaaacatccaaatctagttgagataattggatgctgtgctgatggaaataaccggattttggtctatgaatatttagaaaatagaagccttgatcgggcactgtttggttcaaggactagtattaagttagaatgggaaaaaaggactactatttgcttgggtactgctcgaggtcttgcatatctacatgaagaactagtgccacatatagtgcacagggatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="89717" stop="91434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90020" g_stop="90168" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="156" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90169" i_stop="90352" i_length="184">
            <donor d_prob="0.804" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90353" g_stop="90465" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="269" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90466" i_stop="90723" i_length="258">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90724" g_stop="90934" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="480" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90935" i_stop="91015" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91016" g_stop="91134" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="599" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E394852" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90020" e_stop="90168"/>
          <exon e_start="90353" e_stop="90465"/>
          <exon e_start="90724" e_stop="90934"/>
          <exon e_start="91016" e_stop="91134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAGGTTAGTGGGAACTGGGATGTTTTTCTGTTTTTTCAGAGGACTTGTTTGCAACTTTATGCCATTGGAGATGCATTGCGCATTTGGTTGTAGATCATCTTCAACCTAGGCATAAGTAATGCCAGTGCAAATGCTGTCTTGAGTAAATTCAATTCATATACCATAACTATCTTTATATATCTGGCAGGTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAGGTACAGCTCTACTCAACGAATACGTCTCATGCTTTTTCATGCAGCAGTTTTGTGCATTGGACAACTTATTTTTGTGTCTTTTGCATAGTTCTGTTTAAAGTGTTACATTCTTGGATGTTATGGTTTAGTTCAAGTTATAGTAGTAGTAGGCAGATTTTTGAAATTCTCAGGAAATCTGCATTACTAACTTCATATTTTGTTATTAGATTTTCATTATTATCTCCCCTTTAATGGAGTTGTGTAATACGGTAATTGCAGGGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTGGTAATGGCCGAACTTCTGGTAAAATAAAGGATTAACTTGAGAATTATGGAATGGCTGATAATGGTATTTTTTACTTTGCAGGTTCAAGGACTAGTATTAAGTTAGAATGGGAAAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATA</genome_strand>
        <mrna_strand>TGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAG........................................................................................................................................................................................GTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAG..................................................................................................................................................................................................................................................................GGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTG.................................................................................GTTCAAGGACTAGTATTAAGTTAGAATGGGAAAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379922" ref_strand="+" ref_description="SGN-E379922 [TUS-1-E3](-)">
      <seq>gatgaagaactagatgaattcccggagagagaagtcgtcaggtacatcaagacggctctgttttgcacacaagcaaatgcaaacagaagaccaatgatgagccaggttattgagatgctttcaagagatatccagctaaatgagaaagaacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaacgccatctaagttcacagaagattgaaattgcaggattaatgatatcggaaggcgttgtcaaagttcctagacaaaattccagcaatttatgtgtattatttttgtatgacaaacatttttttggaacctgttttttaccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="92890" stop="94203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93190" g_stop="93903" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E379922" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93190" e_stop="93903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGAACTAGATGAATTCCCGGAGAGAGAAGTCGTCAGGTACATCAAGACGGCTCTGTTTTGCACACAAGCAAATGCAAACAGAAGACCAATGATGAGCCAGGTTATTGAGATGCTTTCAAGAGATATCCAGCTAAATGAGAAAGAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTAT</genome_strand>
        <mrna_strand>GATGAAGAACTAGATGAATTCCCGGAGAGAGAAGTCGTCAGGTACATCAAGACGGCTCTGTTTTGCACACAAGCAAATGCAAACAGAAGACCAATGATGAGCCAGGTTATTGAGATGCTTTCAAGAGATATCCAGCTAAATGAGAAAGAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGAACCTGTTTTTTACCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392240" ref_strand="+" ref_description="SGN-E392240 [TUS-36-I12]">
      <seq>gaacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaagcgggcgccatctaagttcacagaagattgaaattgcaggattaatgatatcggaagggcgttgtcaaaattcctaaacaaaattccagcaatttatgtgtattatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="93037" stop="94162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93337" g_stop="93862" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E392240" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93337" e_stop="93862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAA-CAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAA-GGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTT</genome_strand>
        <mrna_strand>GAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAAGCGGGCGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGGCGTTGTCAAAATTCCTAAACAAAATTCCAGCAATTTATGTGTATTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392462" ref_strand="+" ref_description="SGN-E392462 [TUS-36-C16]">
      <seq>gaacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaaccgttctgcaagtgtagttcatacacatgaagcaaaattgagtttgcaaaatctaaattttttgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="93037" stop="94049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93337" g_stop="93749" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E392462" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93337" e_stop="93749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAAT</genome_strand>
        <mrna_strand>GAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCGTTCTGCAAGTGTAGTTCATACACATGAAGCAAAATTGAGTTTGCAAAATCTAAATTTTTTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369484" ref_strand="-" ref_description="SGN-E369484 [TUS-23-G9]">
      <seq>ttttttttttttttttttttttttttttttttttttnttttttatcttgataaaatattattttgaaagaatattttacttgaaactatataatgttatcggtttaatataatacctgtcagaataaaaataataaggtaaaaaacaggatccaaaaaaatgtttgtcatacaaaaataatacacataaattgctggaattttgtctaggaactttgacaacgccttccgatatcattaatcctgcaatttcaatcttctgtgaacttagatggcgtttgtttgaaatttttcaaaaaattttgaatttgcaaactcaattttgcttcatgtgtctgaactacacttgcagaaaggttcaaacttttctatgaagatttcagaaatatttcaacaaatttgaaaaaactagatttgaaaaagttagctatccttttttgttaaaaatccataatatacaagtttgcaaactcaattcctagaaaatctcaagcaaacgtcatcttaagctgcaaaacaatgtcgcaggaagaatgattcaagtgcaggatcaggcggtcaccaaggatgactatctaggggtcacctgagtaattgtgatgtgtacagaactttgttgactagtattacctctagatatcttcaatcttgattgcacgcttccttcagaatcttcgaagaaaccaggtggtgtaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98941" stop="93038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94095" g_stop="94055" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.610"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94054" i_stop="93995" i_length="60">
            <donor d_prob="0.000" d_score="0.61"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93994" g_stop="93338" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="698" r_length="657" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E369484" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369484" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94095" e_stop="94055"/>
          <exon e_start="93994" e_stop="93338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTAGATTATTGATTTTGCAATTATATTTTTGCTTATTTCCGAATATAGAAAACTACGCGGAAAAAAAACATAAAGTAACGTGCATGGAAAAATCAGTTATCTTGATAAAATATTATTTTGAAAGAATATTTTACTTGAAACTATATAATGTTATCGGTTTAATATAATACCTGTCAGAATAAAAATAATAAGGTAAAAAACAGGATCCAAAAAAATGTTTGTCATACAAAAATAATACACATAAATTGCTGGAATTTTGTCTAGGAACTTTGACAACGCCTTCCGATATCATTAATCCTGCAATTTCAATCTTCTGTGAACTTAGATGGCGTTTGTTTGAAATTTTTCAAAAAATTTTGAATTTGCAAACTCAATTTTGCTTCATGTGTCTGAACTACACTTGCAGAAAGGTTCAAACTTTTCTATGAAGATTTCAGAAATATTTCAACAAATTTGAAAAAACTAGATTTGAAAAAGTTAGCTATCCTTTTTTGTTAAAAATCCATAATATACAAGTTTGCAAACTCAATTCCTAGAAAATCTCAAGCAAACGTCATCTTAAGCTGCAAAACAATGTCGCAGGAAGAATGATTCAAGTGCAGGATCAGGCGGTCACCAAGGATGACTATCTAGGGGTCACCTGAGTAATTGTGATGTGTACAGAACTTTGTTGACTAGTATTACCTCTAGATATCTTCAATCTTGATTGCACGCTTCCTTCAGAATCTTCGAAGAAACCAGGTGGTGTAAGTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTT............................................................TTATCTTGATAAAATATTATTTTGAAAGAATATTTTACTTGAAACTATATAATGTTATCGGTTTAATATAATACCTGTCAGAATAAAAATAATAAGGTAAAAAACAGGATCCAAAAAAATGTTTGTCATACAAAAATAATACACATAAATTGCTGGAATTTTGTCTAGGAACTTTGACAACGCCTTCCGATATCATTAATCCTGCAATTTCAATCTTCTGTGAACTTAGATGGCGTTTGTTTGAAATTTTTCAAAAAATTTTGAATTTGCAAACTCAATTTTGCTTCATGTGTCTGAACTACACTTGCAGAAAGGTTCAAACTTTTCTATGAAGATTTCAGAAATATTTCAACAAATTTGAAAAAACTAGATTTGAAAAAGTTAGCTATCCTTTTTTGTTAAAAATCCATAATATACAAGTTTGCAAACTCAATTCCTAGAAAATCTCAAGCAAACGTCATCTTAAGCTGCAAAACAATGTCGCAGGAAGAATGATTCAAGTGCAGGATCAGGCGGTCACCAAGGATGACTATCTAGGGGTCACCTGAGTAATTGTGATGTGTACAGAACTTTGTTGACTAGTATTACCTCTAGATATCTTCAATCTTGATTGCACGCTTCCTTCAGAATCTTCGAAGAAACCAGGTGGTGTAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371977" ref_strand="+" ref_description="SGN-E371977 [TUS-30-G10]">
      <seq>aacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcacgtgacccctatatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaacgccatctaagttcacagaagattgaaattgcaggattaatgatatcggaaggcgttgtcaaagttcctagacaaaattccagcaattttatgtgtattatttttgtatgacaaacatttttttggatcctgtattttaccttattatttttattctgacaggtattattataaaaccgaatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="93038" stop="94243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93338" g_stop="93943" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E371977" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93338" e_stop="93943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAA-TTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTA-TATTAAACCGATAACAT</genome_strand>
        <mrna_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCACGTGACCCCTATATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTATTTTACCTTATTATTTTTATTCTGACAGGTATTATTATAAAACCGAATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232881" ref_strand="+" ref_description="SGN-E232881 [cLED-8-K16]">
      <seq>aacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaacgccatctaagttcacagaagattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="93038" stop="94087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93338" g_stop="93787" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E232881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93338" e_stop="93787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAA</genome_strand>
        <mrna_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243637" ref_strand="+" ref_description="SGN-E243637 [cLED-34-J3]">
      <seq>aacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaacgccatctaagttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="93038" stop="94075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93338" g_stop="93775" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E243637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93338" e_stop="93775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCAC</genome_strand>
        <mrna_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233513" ref_strand="+" ref_description="SGN-E233513 [cLED-9-A4]">
      <seq>aacttacaccacctggtttcttcgaagattctgaaggaagcgtgcaatcaagattgaagatatctagaggtaatactagtcaacaaagttctgtacacatcacaattactcaggtgacccctagatagtcatccttggtgaccgcctgatcctgcacttgaatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="93038" stop="93935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93338" g_stop="93635" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E233513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93338" e_stop="93635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTC</genome_strand>
        <mrna_strand>AACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369483" ref_strand="+" ref_description="SGN-E369483 [TUS-23-G9](-)">
      <seq>ggcaatcaagattgaagatatctaaaggtaatattagtcaacaaagttttgtacacatcacaattactcaggtgacccctaaaaagtcatccttggtgaccgcctgatcctgcacttgaatcatttttcctgcgacattgttttgcagcttaaaaaaacgtttgcttgaaattttttaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaaaaaaactaactttttcaaatttagttttttcaaatttgttgaaaaatttttgaaattttcataaaaaagtttgaacctttttgcaagggtagttcaaacacatgaaacaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaaccccatttaagttcccaaaaaattgaaattgcaggattaatgaaatcggaaggggttgtcaaagttcctaaacaaaattccaacaatttatgggtattatttttgtatgacaaacatttttttggatcctgttttttaccttattatttttattttgccaggttttatattaaaccgataaccttatatagtttcaagtaaaatattttttcaaaataatattttttccagattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="93081" stop="98941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93380" g_stop="93992" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93993" i_stop="94059" i_length="67">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.59"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94060" g_stop="94103" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="657" r_length="44" r_score="0.591"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E369483" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93380" e_stop="93992"/>
          <exon e_start="94060" e_stop="94103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTATATTAAACCGATAACATTATATAGTTTCAAGTAAAATATTCTTTCAAAATAATATTTTATCAAGATAACTGATTTTTCCATGCACGTTACTTTATGTTTTTTTTCCGCGTAGTTTTCTATATTCGGAAATAAGCAAAAATATAATTGCAAAATCAATAATCTAAATAAATATTAATA</genome_strand>
        <mrna_strand>GGCAATCAAGATTGAAGATATCTAAAGGTAATATTAGTCAACAAAGTTTTGTACACATCACAATTACTCAGGTGACCCCTAAAAAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTTTTCCTGCGACATTGTTTTGCAGCTTAAAAAAACGTTTGCTTGAAATTTTTTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAAAAAAACTAACTTTTTCAAATTTAGTTTTTTCAAATTTGTTGAAAAATTTTTGAAATTTTCATAAAAAAGTTTGAACCTTTTTGCAAGGGTAGTTCAAACACATGAAACAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACCCCATTTAAGTTCCCAAAAAATTGAAATTGCAGGATTAATGAAATCGGAAGGGGTTGTCAAAGTTCCTAAACAAAATTCCAACAATTTATGGGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTTTGCCAGGTTTTATATTAAACCGATAACCTTATATAGTTTCAAGTAAAATATTTTTTCAAAATAATATTTTTTCCAGAT...................................................................TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394851" ref_strand="+" ref_description="SGN-E394851 [TUS-43-A19](-)">
      <seq>cagggtgacccctagatagtcatctttggtgaccgcatgatcctgccctcccatcattcttcctgcgacattgttttgcagcttaagatgacgtttgcttgagattttctaggaattgagtttgcaaacttgtatattatggatttttaacaaaaaaggatagctaactttttcaaatctagttttttcaaatttgttgaaatatttctgaaatcttcatagaaaagtttgaacctttctgcaagtgtagttcagacacatgaagcaaaattgagtttgcaaattcaaaattttttgaaaaatttcaaacaaacgccatctaagttcacagaagattgaaattgcaggattaatgatatcggaaggcgttgtcaaagttcctagacaaaattccagcaatttatgtgtattatttttgtatgacaaacatttttttggatcctgttttttaccttattatttttattctgacaggtattatattaaaccgataacattatatagtttcaagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="93148" stop="94264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93451" g_stop="93961" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="515" r_length="511" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E394851" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93451" e_stop="93961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTATATTAAACCGATAACATTATATAGTTTCAAGTAAA</genome_strand>
        <mrna_strand>GTGACCCCTAGATAGTCATCTTTGGTGACCGCATGATCCTGCCCTCCCATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTATATTAAACCGATAACATTATATAGTTTCAAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392482" ref_strand="-" ref_description="SGN-E392482 [TUS-36-I12](-)">
      <seq>tttttttttttttttttttttttttttttttttttttttttttttaccttgaaaaaactttattttgaaaaaatattttacttgaaactatataatgttatcggtttaatataatacctgtcaaaataaaaataataaggtaaaaaacaggatccaaaaaaatgtttgtcatacaaaaataatacccataaattgctggaattttgtctaggaactttgacaaccccttccaatatcattaatcctgcaatttcaatcttctgggaacttaaatggcgtttgtttgaaatttttcaaaaaattttgaatttgcaaactcaattttgcttcatgtgtctgaactaccctttcttaattgttcaaacttttctatgaaaatttcaaaaatatttcaacaaatttgaaaaaactaaatttgaaaaagttacctatccttttttgttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98941" stop="93290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94095" g_stop="94053" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.628"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94052" i_stop="93995" i_length="58">
            <donor d_prob="0.000" d_score="0.63"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93994" g_stop="93590" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="448" r_length="405" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E392482" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392482" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94095" e_stop="94053"/>
          <exon e_start="93994" e_stop="93590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTAGATTATTGATTTTGCAATTATATTTTTGCTTATTTCCGAATATAGAAAACTACGCGGAAAAAAAACATAAAGTAACGTGCATGGAAAAATCAGTTATCTTGATAAAATATTATTTTGAAAGAATATTTTACTTGAAACTATATAATGTTATCGGTTTAATATAATACCTGTCAGAATAAAAATAATAAGGTAAAAAACAGGATCCAAAAAAATGTTTGTCATACAAAAATAATACACATAAATTGCTGGAATTTTGTCTAGGAACTTTGACAACGCCTTCCGATATCATTAATCCTGCAATTTCAATCTTCTGTGAACTTAGATGGCGTTTGTTTGAAATTTTTCAAAAAATTTTGAATTTGCAAACTCAATTTTGCTTCATGTGTCTGAACTACACTTGCAGAAAGGTTCAAACTTTTCTATGAAGATTTCAGAAATATTTCAACAAATTTGAAAAAACTAGATTTGAAAAAGTTAGCTATCCTTTTTTGTTAAAAA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT..........................................................TTACCTTGAAAAAACTTTATTTTGAAAAAATATTTTACTTGAAACTATATAATGTTATCGGTTTAATATAATACCTGTCAAAATAAAAATAATAAGGTAAAAAACAGGATCCAAAAAAATGTTTGTCATACAAAAATAATACCCATAAATTGCTGGAATTTTGTCTAGGAACTTTGACAACCCCTTCCAATATCATTAATCCTGCAATTTCAATCTTCTGGGAACTTAAATGGCGTTTGTTTGAAATTTTTCAAAAAATTTTGAATTTGCAAACTCAATTTTGCTTCATGTGTCTGAACTACCCTTTCTTAATTGTTCAAACTTTTCTATGAAAATTTCAAAAATATTTCAACAAATTTGAAAAAACTAAATTTGAAAAAGTTACCTATCCTTTTTTGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E219133" ref_strand="+" ref_description="SGN-E219133 [cLEL-11-G21](-)">
      <seq>tgcccctgccaaggacgccaaagttgggaaggatggaaaagacaccaaagatgccaaagctggaaaggacggaaaagacaccaagaatgctaaagatactgtagcaccaaatgggactccagatgcacctaccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttgtaatgtgttatcctcttacatatactcttttttctctatgaattttgtatcatttactatattttgtgtcattctactactattctattggttcgtgacaaacaaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="95290" stop="31495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94990" g_stop="94667" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94666" i_stop="94043" i_length="624">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.911" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94042" g_stop="94023" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="343" r_length="19" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E219133" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94990" e_stop="94667"/>
          <exon e_start="94042" e_stop="94023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTGAAGTTGATTTGGTGGTGAAACATTCCAATCCTTTTGTAGCATAGATTTTCATTGCTGATCTTTGATATGAGCCTAGCGTGTTGTAGACTTCTACCGTGGAGTTGCCTGCCACCTGCTATGTACTTTGGTGTCATTGGACAGCGCAATATTTTCTTTCTTTGATCCGTTTCATTTTTTGGGTGGGCGGGTTGGGGCAGACTTGATAGTGTTCATATTGAAAAGATAGGAGCAACAATGAAAACAGAAAAATAAGTGAGTGTTTGATATGGTGTAAAAAAAAAATTAGAAAAAAAACATCTAGTAAATATTTTTTATATATATTTAGTTGGTCAAAATATTTTAGAAATTTGTTTTTGGTGAAGTTGGAAATACCAAGTTCTTCAAATGCTATTTTACCGTCTCCGACCCCTTCCTATACTCGAACCCACCCTAAGCCCCTACCTCATCTATTAATATTTATTTAGATTATTGATTTTGCAATTATATTTTTGCTTATTTCCGAATATAGAAAACTACGCGGAAAAAAAA</genome_strand>
        <mrna_strand>TGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAAGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-AAACAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E219553" ref_strand="+" ref_description="SGN-E219553 [cLEL-11-G21](-)">
      <seq>atgataccacccccctcctgcccctgccaaggacgccaaagttgggaaggatggaaaagacaccaaggatgccaaagctggaaaggacggaaaagacaccaagaatgctaaagatactgtagcaccaaatgggactccagatgcacctaccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttgtaatgtgttatcctcttacatatactcttttttctctatgaattttgtatcatttactatattttgtgtcattctactactattctattggttcgtggcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="95307" stop="31494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95007" g_stop="94670" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94669" i_stop="94279" i_length="391">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94278" g_stop="94257" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="361" r_length="22" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E219553" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95007" e_stop="94670"/>
          <exon e_start="94278" e_stop="94257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATACCA-CCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTGAAGTTGATTTGGTGGTGAAACATTCCAATCCTTTTGTAGCATAGATTTTCATTGCTGATCTTTGATATGAGCCTAGCGTGTTGTAGACTTCTACCGTGGAGTTGCCTGCCACCTGCTATGTACTTTGGTGTCATTGGACAGCGCAATATTTTCTTTCTTTGATCCGTTTCATTTTTTGGGTGGGCGGGTTGGGGCAGACTTGATAGTGTTCATATTGAAAAGATAGGAGCAACAATGAAAACAGAAAAATAAGTGAGTGTTTGATATGGTGTAAAAAAAAAATTAGAAAAAAAA</genome_strand>
        <mrna_strand>ATGATACCACCCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223319" ref_strand="+" ref_description="SGN-E223319 [cLEL-14-C19](-)">
      <seq>ggcacgagaccaaatgggactccagatgcacctaccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttgtaatgtgttatcctcttacatatactcttttttctctatgaattttgtatcatttactatattttgtgtcattctactactattctattggttcgtgacagacattagctgcattttgttgcattggatgtctgagtttgtttattgtactatttaggtcctttcttaactggaggtgaattcattattttcttgtttacagaaaccttatatttcttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="95193" stop="94249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94896" g_stop="94549" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="359"/>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E223319" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94896" e_stop="94549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTGAA</genome_strand>
        <mrna_strand>GGCAC-G-AG-ACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223550" ref_strand="+" ref_description="SGN-E223550 [cLEL-14-C19](-)">
      <seq>ggcacgagaccaaatgggactccagatgcacctaccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttgtaatgtgttatcctcttacatatactcttttttctctatgaattttgtatcatttactatattttgtgtcattctactactattctattggttcgtgacagacattagctgcattttgttgcattggatgtctgagtttgtttattgtactatttaggtcctttcttaactggaggtgaattcattattttcttgtttacagaaaccttatatttcttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="95193" stop="94249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94896" g_stop="94549" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="359"/>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E223550" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94896" e_stop="94549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTGAA</genome_strand>
        <mrna_strand>GGCAC-G-AG-ACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696275" ref_strand="+" ref_description="SGN-E696275 [LH_Ea08L09](-)">
      <seq>cgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggagaaggcaaaatgctatccgtcttgaggagaaggagaatagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagagaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttcaaggatgcgccacatactgctgaagcttaagcacaccccaccacctcacatgataccaccccctcctgcccctgccaaggacgccaaagttgggaaggatggaaaagacaccaaggatgccaaagctggaaaggacggaaaagacaccaagaatgctaaagatactgtagcaccaaatgggactccagatgcacctcccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttttaatgtgttatcctcttacatattactcttttttctctatgaattttgtatcatttgctatattttgtgtcattctactactattctattggttaaggggcagacaatagctgcaatttgttgcatggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98269" stop="94377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97969" g_stop="97924" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95375" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="200" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95241" g_stop="94634" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="810" r_length="610" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E696275" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97969" e_stop="97924"/>
          <exon e_start="95528" e_stop="95375"/>
          <exon e_start="95241" e_stop="94634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATA-TACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTT-CGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAG</genome_strand>
        <mrna_strand>CGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAATAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAGAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTCCCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTTTAATGTGTTATCCTCTTACATATTACTCTTTTTTCTCTATGAATTTTGTATCATTTGCTATATTTTGTGTCATTCTACTACTATTCTATTGGTTAAGGGGCAGACAATAGCTGCAATTTGTTGCATGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711543" ref_strand="+" ref_description="SGN-E711543 [FB02BB10]">
      <seq>cgcatattctatgagaaaagaaatctcagtattgagaccaacacgacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttcaaggatgcgccacatactgctgaagcttaagcacaccccaccacctcacatgataccaccccctcctgcccctgccaaggacgccaaagttgggaaggatggaaaagacaccaaggatgccaaagctggaaaggacggaaaagacaccaagaatgctaaagatactgtagcaccaaatgggactccagatgcacctaccagtgatgccaaagttactcagacatcagaagaacctactgctgcagaatgatcggcttttagcctaatttctttagtctttgatgttgtaatgtgttatcctcttacatatactcttttttctctatgaattttgtatcatttactatattttgtgtcattctactactattctattggttcgtgacagacattagctgcattttgttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="95738" stop="94347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95443" g_stop="95375" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95241" g_stop="94650" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="661" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="675"/>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E711543" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95443" e_stop="95375"/>
          <exon e_start="95241" e_stop="94650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTT</genome_strand>
        <mrna_strand>CGCATATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACACGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701976" ref_strand="+" ref_description="SGN-E701976 [FA17BH04]">
      <seq>agggactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtatcggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttcaaggatgcgccacatactgctgaagcttaagcacaccccaccacctcacatgataccaccccctcctgcccctgccaaggacgccaaagttgggaaggatggaaaagaccccaggatgcccaagctggaaaggacgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98659" stop="94618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98362" g_stop="97924" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95375" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="593" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95241" g_stop="94918" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="916" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E701976" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98362" e_stop="97924"/>
          <exon e_start="95528" e_stop="95375"/>
          <exon e_start="95241" e_stop="94918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGA</genome_strand>
        <mrna_strand>AGGGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTATCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGAC-CCCAGGATGCCCAAGCTGGAAAGGACGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700012" ref_strand="+" ref_description="SGN-E700012 [FA11DD11]">
      <seq>ggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttncaggatgcgccacatactgctgaagcttaagcacaccccaccacctcacatgataccaccccctcctgcccctgccaaggacgccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98628" stop="94668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98328" g_stop="97924" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95375" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="559" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95241" g_stop="94968" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="833" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E700012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98328" e_stop="97924"/>
          <exon e_start="95528" e_stop="95375"/>
          <exon e_start="95241" e_stop="94968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAG</genome_strand>
        <mrna_strand>GGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTNCAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701718" ref_strand="+" ref_description="SGN-E701718 [FA16DA05]">
      <seq>gcagcactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttcaaggatgcgccacatactgctgaagcttaagcacaccccaccacctcacatgataccaccccctcctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98662" stop="94687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98362" g_stop="97924" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95375" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="594" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95241" g_stop="94987" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="849" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E701718" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98362" e_stop="97924"/>
          <exon e_start="95528" e_stop="95375"/>
          <exon e_start="95241" e_stop="94987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAG-ACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCC</genome_strand>
        <mrna_strand>GCAGCACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728476" ref_strand="+" ref_description="SGN-E728476 [LA17DG10]">
      <seq>gcagactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggccctaacctgggaaacctaccgatctttcaaggatgcgccacatactgctgaagcttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98662" stop="94726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98362" g_stop="97924" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95375" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="593" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95241" g_stop="95026" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="809" r_length="216" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E728476" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98362" e_stop="97924"/>
          <exon e_start="95528" e_stop="95375"/>
          <exon e_start="95241" e_stop="95026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAG</genome_strand>
        <mrna_strand>GCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCCTAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704135" ref_strand="+" ref_description="SGN-E704135 [FA23BG09]">
      <seq>gagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatcaagataagaagccatccatcacagtcgtccaagggcctaaacctgggaaacctaccgatctttcagggatgcgccacatactgctgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98648" stop="94730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98348" g_stop="97924" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95375" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="579" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95241" g_stop="95030" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="791" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E704135" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98348" e_stop="97924"/>
          <exon e_start="95528" e_stop="95375"/>
          <exon e_start="95241" e_stop="95030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCT</genome_strand>
        <mrna_strand>GAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAGGGATGCGCCACATACTGCTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698434" ref_strand="+" ref_description="SGN-E698434 [FA06BB09]">
      <seq>cgtttttcgttgactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagttccataaagaagctgataagcaatattggaaagccatagcagagctcattcccaaggaggtgcccagcattgagaagaagggaaggaagaaggatctagataagaagccatccatcacagtcgtccaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98668" stop="94786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98369" g_stop="97924" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95375" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="601" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.554" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95241" g_stop="95086" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="757" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E698434" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98369" e_stop="97924"/>
          <exon e_start="95528" e_stop="95375"/>
          <exon e_start="95241" e_stop="95086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTT-GCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGG</genome_strand>
        <mrna_strand>CGTTTTTCGTTGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCTAGATAAGAAGCCATCCATCACAGTCGTCCAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363923" ref_strand="+" ref_description="SGN-E363923 [cLPT-10-P6]">
      <seq>atggctgcatttgatgctttcagtttggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtgacggtggaacacgtatctcataccgtcgatagtcccgatccctacgggtacgggtcagattcgtttcctaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagagagcattctatgagaaaagaaatctcagtattgagaccaacaagacaactaaccgcgagaaagagaagctgtacttgactagtcaagagaagttccataaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98624" stop="94907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98324" g_stop="97924" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95375" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="555" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.554" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95241" g_stop="95207" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="590" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E363923" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98324" e_stop="97924"/>
          <exon e_start="95528" e_stop="95375"/>
          <exon e_start="95241" e_stop="95207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGA</genome_strand>
        <mrna_strand>ATGGCTGCATTTGATGCTTTCAGTTTGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTGACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGGTACGGGTCAGATTCGTTTCCTAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAGAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAGAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278654" ref_strand="+" ref_description="SGN-E278654 [cLER-10-D23]">
      <seq>agattttgcagactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccatattattgaggaaggtgaagaatataagagagcattctatgagaaaagaaatcttagttttgagaccaacaagacaactaaccgcgagaaagaaaagctgtacttgactagtcaagagaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98669" stop="94916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98369" g_stop="97924" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95375" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="600" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133">
            <donor d_prob="0.924" d_score="0.96"/>
            <acceptor a_prob="0.554" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95241" g_stop="95216" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="626" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E278654" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98369" e_stop="97924"/>
          <exon e_start="95528" e_stop="95375"/>
          <exon e_start="95241" e_stop="95216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAGGTGAAGCTCTAGGGAGTTATCAGCTTTTCTTAACAAACTGGAGTTATATTTGATTCTCCCTACTCTTTCTTACAAGATTTTATGGATATCTAACTTTGACAAGTTCTTTCCTTTTCTCCCCTCCCCATGACAGCTGTACTTGACTAGTCAAGAGAAGTT</genome_strand>
        <mrna_strand>AGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCATATTATTGAGGAAGGTGAAGAATATAAGAGAGCATTCTATGAGAAAAGAAATCTTAGTTTTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG.....................................................................................................................................CTGTACTTGACTAGTCAAGAGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346287" ref_strand="+" ref_description="SGN-E346287 [cTOF-23-L15]">
      <seq>agattttgcagactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaaaggaaatcagaagccaaattattgaggaaggtgaagaatataagaaagcattctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98669" stop="95131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98369" g_stop="97924" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95431" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="544" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E346287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98369" e_stop="97924"/>
          <exon e_start="95528" e_stop="95431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATG</genome_strand>
        <mrna_strand>AGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358524" ref_strand="+" ref_description="SGN-E358524 [cLHT-22-I5]">
      <seq>aaagaagagagaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtgacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttcctaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaagtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggagaaagcaaaatgctatccgtcttgaggagaaggagaatagagaaaaggaaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98645" stop="95178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98345" g_stop="97924" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95478" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="473" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E358524" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98345" e_stop="97924"/>
          <exon e_start="95528" e_stop="95478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAG</genome_strand>
        <mrna_strand>AAAGAAGAGAGAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTGACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCTAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAAGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGAGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAATAGAGAAAAGGAAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335887" ref_strand="+" ref_description="SGN-E335887 [cTOE-6-J20]">
      <seq>tgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaagaaggttttgcgctccgcgaatggcgaaggcaaaatgctatccgtcttgaggagaaggagaagagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98656" stop="95188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98356" g_stop="97924" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95528" g_stop="95488" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="474" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E335887" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98356" e_stop="97924"/>
          <exon e_start="95528" e_stop="95488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAGGTTTGTTCTACTTCATTCCTATTTTTGCGAATTTATTTTGATTTAGTATATTACCAAAAAGAAGATGTATTGATTTTAAGCTGTTCCTTAATATTTTAACTAAAATTGACAGATCTATTGCTTATTGTTAGTTACTGTAAATGGCAGATCATCGATAAGATCAGCTTTATTTCAAAGTTCCTAAGCTCTATAGTGAATTAATTTTTTTTGCATATTTTAATTTAATTCTGGAACTTTTTTATTTTATTGTTAAATTTGCAGATCTATTGTTGATACTAATAGATCTGTTAGTTTGTGTTTGCGCTCAATTTTAGGAGTTCCTGCGGTGTAAGACGCTGATCACTATGATCTCTTGGCAAAGAAAATTTGAATGTTGTAGGTCTTAACTTGTGGAGTATTTCATTTCTATTTATCTTCTACTTGAGATGATTTATATCTTGAGATCAATTTCCGAAAATGCTATAGGTGTCGATTTTCTATTGCATTAATTGGTTCATAACTACCAACTTTGTGCCATGGGACAAGAATAATAAGCTTCTAGTGGGGTTCCCCTCCCCAAATAAGTTAGTTTTTAGTGCTAAAATTAAGTAAAGCTTGTGTCGAGACACTCTTAATGCTTTTTGAGTACAACTAATTAGGTATTGTTAGGGCTAGTCTAGTTCTTCTAGTATTGGTTCATGTATTGTCGTGCATAGGGGAAAACTAAGAAGTTCCAATTGAGATATCCGTAAGCTGGGAAAATGTATAAATGTTTTCACATATCTTTACTAATAGTTCTCACTTATAAGTTGGAAGGATTGAGCATTTTCATGTTTTCCTCTTTCCCCATTGTTGCCACTCCTAAAAGCTGTCCAAACTCCACAGTGCTGAACTATTTCATCACTTGACATCACAAGCAATGTTTTCTAGACTTCCTGAATTTCGAAGATCAAATTATTTGTTTGAAGGAGTTATATGTGTAGAGAAAATTAGAAGCAAATTCTACTGGTTCTTGGATGAGATCATATAGAGTTCAGGATTAGGGGTTGAATCTCATTGATAATTGATGATTTGTTTTGATTTTCTACTAGTACTATAAAATAGTATATTCTTGAGAACTTACGAAAATATCACGCCATGTTTCGGTATAGGTATGGCAATGGGACGAGGGCAGGGCAAAGGTCTAATAGGGGCGGGGGCGGTCAAAGCTTAAATTTTTAAAACTTTAGGTGGGGCATGGGAAGGTTGTGTTTCACTGTTTGGGGCCTTTTGGCCCATCCTTTCGTAAGAGATTTGTTGGTGGTTTTCTGAGACATAATTGAGCAAGGTTAACAAATAAATTGGACATTGTAGTATTAAAAGTTTGAGTCTCGTGTATGAGATTTCAGATCTGAATTTCCTCATAGTGGTTTTGTGGTAGTAGTGGTGTGATTATGGGACGAGATTTAGTATCATTTAAATTTATTTTATGTGATGTCTAAACATAGTTGAATCATTTTCATCAACAAATTAATTTTATGAATCATTTATAAAGTTGACCTTTTCTATTAGATGCTGCTCTTGTAATGTAATTAGATCATAATAAGCTATGAAAGTTTATCAAACATGGTGATAAGAACAGTGATTTAGTTTAACAGAAATGGTGTTCAATGCCAACTTTCAGTCTTTCACTGACGGGACATAATAAACAATAACACAATCCTCATCTTTTATGTTTTATTTAGAAGGATATTCAATAGTATGCGCTAAACAGATCTTTTCTGTTTTAAAATAGAAGCAGTTTTTTTTTGTAAATATTAAATAGGATACTTCCAAAAAAAATGAAGTCTTATTAGTGAAATGGGACAGAGCGTGGTGGGAAGGGCAGATCAAAATCTTAACATGTCAAGCTGTATCCCACCTGCCCCATTTACATTCCTAGTGGCTTAACCATAATTGAGAGTAATTGGTTATGCACAACCCTTTTTTCCTTTGAATCCACCATTTTTTGGGAATTGGGTTGAGGGCTTTAGCAAAATGGAATTAGGGTCAAGAGGTAGGGGCTGACGTGGAGTGATGCTAAGCATTCCAATGGCAGAAGAGTATTTCCTCAAGGGGATTCTATGTATCTAGACAATGAGTCGTTTTTGCTTTTCTCAGATAAATAAAAAAGAAGAGAATCAAAAGAATCTCATTACATCAGTACATGACTCTCTTTTGGCCAAATTTTTTCGGACGCCTGCAATTGAAATGATGAAAACTAAGCTGTCATATACATGTAGGGTGCCACATGAGTAACAATCTTTGAGGTTTATAGTTAGCATGCATATGCTAAAACAAATTAAGGATCGTTTGTGCAATATTCTTTAGGAATATTGGAAATGTGCTCGTATATGTGTGCTGTTAAAATTTTCGTTTGTTTTTTGGTTTGGATCAGGCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAA</genome_strand>
        <mrna_strand>TGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAAGAAGGTTTTGCGCTCCGCGAATGGCGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697973" ref_strand="+" ref_description="SGN-E697973 [FA04DE02]">
      <seq>ggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagataccgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggcgaaggcaaaatgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98642" stop="97623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98342" g_stop="97924" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E697973" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98342" e_stop="97924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG</genome_strand>
        <mrna_strand>GGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACCGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293370" ref_strand="+" ref_description="SGN-E293370 [cLET-18-F3]">
      <seq>tactagagagaaggaaaattcgagagattttgcagactgtagagagagaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtgaggaaggttttgcgctccgcgaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98693" stop="97628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98393" g_stop="97928" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E293370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98393" e_stop="97928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAGAGAGAAGGAAAATTCGAGAGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGC</genome_strand>
        <mrna_strand>TACTAGAGAGAAGGAAAATTCGAGAGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311363" ref_strand="+" ref_description="SGN-E311363 [cLEZ-18-O14]">
      <seq>agaaaggagagaaaagaagggaaatggctgcatttgatgcgttcagtatggacggtgaggtaccggcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctacggatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctaggtgaagatactgagggaattttcagttccgatggacccgttctcccccctccgaatgaaatgcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98647" stop="97655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98347" g_stop="97955" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E311363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98347" e_stop="97955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTG</genome_strand>
        <mrna_strand>AGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324559" ref_strand="+" ref_description="SGN-E324559 [cTOC-9-H3]">
      <seq>tggactgtgaggtacctgcaccggcggcatcaacaccgttcgatgatggagactacgacggctcttacaccgccttctccaacgccgatacgccgccgtttcacggctctggaggattcggtggagactatgacgaagtaacggtggaacacgtatctcataccgtcgatagtcccgatccctactgatacgggtcagattcgtttccaaaccaaaccggttcatttggagcttctgcagctccgatctcgaacgggaatggtaagccctacgatctatgtgaagatactgagggaattttcagttccgatggacccgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="98599" stop="97678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98299" g_stop="97978" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E324559" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98299" e_stop="97978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCT</genome_strand>
        <mrna_strand>TGGACTGTGAGGTACCTGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACTGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTATGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694948" ref_strand="-" ref_description="SGN-E694948 [LH_Ea05E02](-)">
      <seq>tttttttttttttttttgctgaaaactaaagatggcattaatcaattgacggtagttacatttggacagtaaattgtaccctggggatacccaaaaaaaaaaacaaagcaaaaatagactacagtaagcaaattacagcttaacaaaattttccacttgtcctatttggtatctaaaaaatgcggaagaaaccacaaaagcgcaaggtctcaaaatcatatcctaagttaactatgaaatcgtcaaaattggagtgtactccgaaaaacgcattggacatggccaaggtgtattcaatatgccggaagaacgaactcccgaaagtatgcggcttttggtacccatcttgaatgaagatgcgaactcattccaggctctaagtggctttttagagatctcccaaaatcacatggaaaatagcaagacatccacagttcacaaatttgaactacctggctcccaaaaggtgattcaattctgatctatcgatccagacacttgcttctattgtgagcgtacatactggatatagtcgagctgaaacagcaggacagtgattcatagtaaagatcccaattggcttcacaaatcacagcggcagatgttcccatgtatgttaaaatttctatggggttgatgtacaagcagaggtgaagatctttatacatagttcatggcatagcggaagtattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="+" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="31491" stop="100759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99200" g_stop="99214" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99215" i_stop="99784" i_length="570">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99785" g_stop="100459" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="694" r_length="679" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="+" ref_id="SGN-E694948" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694948" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99200" e_stop="99214"/>
          <exon e_start="99785" e_stop="100459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTTTCCAATTATATCTTTACATACTATTTCAAAATATCATTTCACCTTTTACCTTATATTATTTAATTCTAGTCAAACCTCCTATCCTAAGATAATTAAGAATGTTTTAATAAATTTATAAATTACAGTACAGTACAATACAATCAAACCAGACAATTAAAATGTTATAAACAACAACAAATAATATAGTCTAACCAAGCATTATATCTATCATACGATACAACAGAGTACAATACATTATGAAACAATGAGTAACAATAATCCGAACACAATGTTGTTCATTCTATTTGACTATCAAGTAACTATGAAACACTTATTTGTGCAGTGTCATGAATTCTTCTAAGAATATATTAAAAGAGCGAGTGAAATCGACGAGTCAAATATCCTTATATTTGAATATTGTGAAAATTAAAAACAAAAACTATGCTTGGTCCAAGAGAGGAGATCACAAAAATTGAACTCGATGACTTAAACCTGCAGCTTTGAAATTGAAGATAGAGTTGCCTCACCCTTTATGTCCTACTCGATATTGAGTGAGGGTGAAGATGACGTGAGTTGGAAAATAAAAAGAGACGATCAATTGCTGAAAACTAAAGATTCCATTAATCAATTGA-GGAGGTTACATTTGGACATTAAATTGTACCCCTGAGGCTA--C-AA-AA-AA-ACAATGCAAAAATAGACTACACAGTAAGCAAATTACAGCTTAACAAAATTTTCCACTCGTCCTATTTTGGTATCTAAAAAATGCGGGAGAAACCACAAAAGCGAAAGGTCTCAAAATCATATCCTAAATCAACTATGAAATCGTCAAAATTGGAGTGTACTCCGGAAAACGCATTGGACATGGCCAAGGTGTATTC-A-ATGCCGGAAGAACTAACTCCCCAAAAGTATGCGGCTTTTGGTGCCCATCTTGAATGAAGATGCGAACTCATTCCAGGCTCTAACTGGCTTTTTAGAGATCTCCCAAAATCACATGGAAAATAGCAAGACATCCACAGTTTACAAATTTGAACTACCTGGCTCCCGAAAGGTGATTCAATTCTGATCTATCGATCCAGACACTTGCTTCTATTGTGAGCGTACATACTGGATATAGTCGAGCTGAAACAGCAGGACAGTGATTCATAGTAAAGATCCCAATTGGCTTCACAAATCACAGCGGCAGATGTTCCCATGTATGTTAAAATTTCTATGGGGTTGATGTACAAGCAGAGGTGAAGATCTTTATACATAGTTCATGGCATAGCGGAAGTATTCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGAAAACTAAAGATGGCATTAATCAATTGACGGTAGTTACATTTGGACAGTAAATTGTA-CCCTGGGGATACCCAAAAAAAAAAACAAAGCAAAAATAGACT--ACAGTAAGCAAATTACAGCTTAACAAAATTTTCCACTTGTCCTA-TTTGGTATCTAAAAAATGCGGAAGAAACCACAAAAGCGCAAGGTCTCAAAATCATATCCTAAGTTAACTATGAAATCGTCAAAATTGGAGTGTACTCCGAAAAACGCATTGGACATGGCCAAGGTGTATTCAATATGCCGGAAGAACGAACT-CCCGAAAGTATGCGGCTTTTGGTACCCATCTTGAATGAAGATGCGAACTCATTCCAGGCTCTAAGTGGCTTTTTAGAGATCTCCCAAAATCACATGGAAAATAGCAAGACATCCACAGTTCACAAATTTGAACTACCTGGCTCCCAAAAGGTGATTCAATTCTGATCTATCGATCCAGACACTTGCTTCTATTGTGAGCGTACATACTGGATATAGTCGAGCTGAAACAGCAGGACAGTGATTCATAGTAAAGATCCCAATTGGCTTCACAAATCACAGCGGCAGATGTTCCCATGTATGTTAAAATTTCTATGGGGTTGATGTACAAGCAGAGGTGAAGATCTTTATACATAGTTCATGGCATAGCGGAAGTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691107" ref_strand="+" ref_description="SGN-E691107 [LH_Ea05E01]">
      <seq>cattagaatacttccgctatgccatgaactatgtataaagatcttcacctctgcttgtacatcaaccccatagaaattttaacatacatgggaacatctgccgctgtgatttgtgaagccaattgggatctttactatgaatcactgtcctgctgtttcagctcgactatatccagtatgtacgctcacaatagaagcaagtgtctggatcgatagatcagaattgaatcaccttttgggagccaggtagttcaaatttgtgaactgtggatgtcttgctattttccatgtgattttgggagatctctaaaaagccacttagagcctggaatgagttcgcatcttcattcaagatgggtaccaaaagccgcatactttcgggagttcgttcttccggcatattgaatacaccttggccatgtccaatgcgtttttcggagtacactccaattttgacgatttcatagttaacttaggatatgattttgagaccttgcgcttttgtggtttcttccgcattttttagataccaaataggacaagtggaaaattttgttaagctgtaatttgcttactgtagtctatttttgctttgtttttttttttttgtatccccagggtacaatttactgtccaaatgtaacctcctcaattgattaatgccatctttagttttcagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="100759" stop="99485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100463" g_stop="99786" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E691107" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100463" e_stop="99786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGC--ATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGCTTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATTG---TTTTTTTGTAG--CCTCAGGGGTACAATTTAATGTCCAAATGTAACCTCCTCAATTGATTAATGGAATCTTTAGTTTTCAGCA</genome_strand>
        <mrna_strand>CATTAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTTGGGAGCCAGGTAGTTCAAATTTGTGAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCACTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGTACCAAAAGCCGCATAC-TTTCGGGAGTTCGTTCTTCCGGCATATTGAATACACCTTGGCCATGTCCAATGCGTTTTTCGGAGTACACTCCAATTTTGACGATTTCATAGTTAACTTAGGATATGATTTTGAGACCTTGCGCTTTTGTGGTTTCTTCCGCATTTTTTAGATACC-AAATAGGACAAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTAC--TGTAGTCTATTTTTGCTTTGTTTTTTTTTTTTTGTATCCCCAGGGTACAATTTACTGTCCAAATGTAACCTCCTCAATTGATTAATGCCATCTTTAGTTTTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E691108" ref_strand="+" ref_description="SGN-E691108 [LH_Ea05E02]">
      <seq>ccgtgaatacttccgctatgccatgaactatgtataaagatcttcacctctgcttgtacatcaaccccatagaaattttaacatacatgggaacatctgccgctgtgatttgtgaacccaattgggatctttactatgaatcactgtcctgctgtttcagctcgactatatccagtatgtacgctcacaatagaagcaagtgtctggatcgatagatcagaattgaatcaccttttgggagccaggtagttcaaatttgtgaactgtggatgtcttgctattttccatgtgattttgggagatctctaaaaagccacttagagcctggaatgagttcgcatcttcattcaagatgggtaccaaaagccgcatactttcgggagttcgttcttccggcatattgaatacaccttggccatgtccaatgcgtttttcggagtacactccaattttgacgatttcatagttaacttaggatatgattttgagaccttgcgcttttgtggtttcttccgcattttttagataccaaataggacaagtggaaaattttgttaagctgtaatttgcttactgtagtctatttttgctttgtttttttttttttgtatccccagggtacaatttactgtccaaatgtaacctcctcaattgattaatgccatctttagttttcagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="100758" stop="99485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100463" g_stop="99786" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E691108" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100463" e_stop="99786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGC--ATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGCTTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATTG---TTTTTTTGTAG--CCTCAGGGGTACAATTTAATGTCCAAATGTAACCTCCTCAATTGATTAATGGAATCTTTAGTTTTCAGCA</genome_strand>
        <mrna_strand>CCG-TGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAACCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTTGGGAGCCAGGTAGTTCAAATTTGTGAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCACTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGTACCAAAAGCCGCATAC-TTTCGGGAGTTCGTTCTTCCGGCATATTGAATACACCTTGGCCATGTCCAATGCGTTTTTCGGAGTACACTCCAATTTTGACGATTTCATAGTTAACTTAGGATATGATTTTGAGACCTTGCGCTTTTGTGGTTTCTTCCGCATTTTTTAGATACC-AAATAGGACAAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTAC--TGTAGTCTATTTTTGCTTTGTTTTTTTTTTTTTGTATCCCCAGGGTACAATTTACTGTCCAAATGTAACCTCCTCAATTGATTAATGCCATCTTTAGTTTTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694947" ref_strand="+" ref_description="SGN-E694947 [LH_Ea05E01](-)">
      <seq>agaatacttccgctatgccatgaactatgtataaagatcttcacctctgcttgtacatcaaccccatagaaattttaacatacatgggaacatctgccgctgtgatttgtgaagccaattgggatctttactatgaatcactgtcctgctgtttcagctcgactatatccagtatgtacgctcacaatagaagcaagtgtctggatcgatagatcagaattgaatcaccttttgggagccaggtagttcaaatttgtgaactgtggatgtcttgctattttccatgtgattttgggagatctctaaaaagccacttagagcctggaatgagttcgcatcttcattcaagatgggtaccaaaagccgcatactttcgggagttcgttcttccggcatattgaatacaccttggccatgtccaatgcgtttttcggagtacactccaattttgacgatttcatagttaacttaggatatgattttgagaccttgcgcttttgtggtttcttccgcattttttagataccaaataggacaagtggaaaattttgttaagctgtaatttgcttactgtagtctatttttgctttgtttttttttaggtgtatccccagggtacaatttactgtccaaatgtaacatcgtcaattgattaatgccatctttagttttcagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="100759" stop="99485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100459" g_stop="99786" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E694947" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100459" e_stop="99786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGC--ATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGCTTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATTGTTTTTTTGTA-GCCT----CAGGGGTACAATTTAATGTCCAAATGTAACCTCCTCAATTGATTAATGGAATCTTTAGTTTTCAGCA</genome_strand>
        <mrna_strand>AGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTTGGGAGCCAGGTAGTTCAAATTTGTGAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCACTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGTACCAAAAGCCGCATAC-TTTCGGGAGTTCGTTCTTCCGGCATATTGAATACACCTTGGCCATGTCCAATGCGTTTTTCGGAGTACACTCCAATTTTGACGATTTCATAGTTAACTTAGGATATGATTTTGAGACCTTGCGCTTTTGTGGTTTCTTCCGCATTTTTTAGATACC-AAATAGGACAAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTAC--TGTAGTCTATTTTTGCTTTGTTTTTTTTTAGGTGTATCCCCAGGGTACAATTTACTGTCCAAATGTAACATCGTCAATTGATTAATGCCATCTTTAGTTTTCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349464" ref_strand="+" ref_description="SGN-E349464 [cTOS-1-P14]">
      <seq>taaaacacaggctgctgaaagggctcttgttgctctgaagtctgagctggctcaattttctcacaagcgccagggttctccaagatcattgcagcagcagggattttctaataaaagattgaaacctgaatattctcggggtgtgcagcagagagtaccattgtctggtagattcccgaagaatacttccgctatgccatgaactatgtataaagatcttcacctctgcttgtacatcaaccccatagaaattttaacatacatgggaacatctgccgctgtgatttgtgaagccaattgggatctttactatgaatcactgtcctgctgtttcagctcgactatatccagtatgtacgctcacaatagaagcaagtgtctggatcgatagatcagaattgaatcacctttcgggagccaggtagttcaaatttgtaaactgtggatgtcttgctattttccatgtgattttgggagatctctaaaaagccagttagagcctggaatgagttcgcatcttcattcaagatgggcaccaaaagccgcatacttttggggagttagttcttccggcattgaatacaccttggccatgtccaatgcgttttccggagtacactccaattttgacgatttcatagttgatttaggatatgattttgagacctttnccgctttgtggtttctcccgcattttttagataccaaaataggacgagtggaaaattttgttaagctgtaatttgcttactgtgtagtctatttttgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="101279" stop="99568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101061" g_stop="101052" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101051" i_stop="100974" i_length="78">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100973" g_stop="100900" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="84" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100899" i_stop="100555" i_length="345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100554" g_stop="99868" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="772" r_length="688" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E349464" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101061" e_stop="101052"/>
          <exon e_start="100973" e_stop="100900"/>
          <exon e_start="100554" e_stop="99868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACACAGGTGCTTACTTTTTAAATTCCTCTCTTATCCCTTTTCTCTATGATTTTAAAATTTTGGGCTGCACATTTGTTTCTCTAGGCTGCTGAAAGGGCTCTTGTTGCTCTGAAGTCTGAGCTGGCTCAATTTTCTCACAAGCGCCAGGGTTCTCCAAGGCAAGTGATTTCAGGCATTTCACTTTTGAAACTAGACTAATGTAGTTTCCCCTATTTGGAAGGCAATTTTTTTCTTCTGGCCACCCAGTAAACCTAATGAAATTCTTTCTGTATATGTGTGGGTTTGGGGTGGGGGTGGGGATTCTGGTTTGTCTTTTTGCTGCCATCTGTTCATAATTTATATTTTTTTGCCTCCTTCGCATCTTGTTATTTAAGGGTGAGCGGGTATTGGATTTCTGATGAAGCCATTATCTTTATTTTAGAGCTGTGTTCTCCATGGCTTTGTTTTGGAGGTAAACCAGTATTAGCTTCTGATTGTGCATTTATTGTTGCTCTTTCATCCAGATCATTGCAGCAGCAGGGATTTTCTAATAAAAGATTGAAACCTGAATATTCTCGGGGTGTGCAGCAGAGAGTACCATTGTCTGGTAGATTCCCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGCATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGC-TTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATT</genome_strand>
        <mrna_strand>TAAAACACAG..............................................................................GCTGCTGAAAGGGCTCTTGTTGCTCTGAAGTCTGAGCTGGCTCAATTTTCTCACAAGCGCCAGGGTTCTCCAAG.........................................................................................................................................................................................................................................................................................................................................................ATCATTGCAGCAGCAGGGATTTTCTAATAAAAGATTGAAACCTGAATATTCTCGGGGTGTGCAGCAGAGAGTACCATTGTCTGGTAGATTCCCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGCATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTNCCGCTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332984" ref_strand="+" ref_description="SGN-E332984 [cTOD-19-D14]">
      <seq>tcaagcgttaccaggaggataaaattattttaaagcaatatgccgaaaatgatcaggttgttgacaatggaaaggtgatcagatctcagtctgaggttttccccgcattgtctgataatcaccaacctattgtcagacccctgattaggttgcaagatagaaacattattcttactcgtattaatccaatgatccgtgatactagtgttcttgtgagattgagacctgcttgggaggatctccgcagctatctgactgcaaggggtcggaagcgctttgaagtttatgtgtgcacaatggctgaaagagattatgctttagaaatgtggcgccttcttgatccagattcaaacttgattaactcacaagaactcttggatcgtattgtctgtgtcaagtctggcttgaggaaatctttgttcaatgtattccaagatggaaattgtcatcctaagatggcattggtgattgatgatcgcttgaaagtgtgggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0065H17-687Df/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0065H17.1" temp_strand="-" temp_description="C02SLe0065H17.1  AC232775.1 htgs_phase:3 submitted_to_sgn_as:C02SLe0065H17 sequenced_by:kribb upload_account_name:korea">
        <position start="108203" stop="106764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107903" g_stop="107713" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107712" i_stop="107451" i_length="262">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107450" g_stop="107240" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="402" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107239" i_stop="107158" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107157" g_stop="107064" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="496" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0065H17.1" gen_strand="-" ref_id="SGN-E332984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0065H17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107903" e_stop="107713"/>
          <exon e_start="107450" e_stop="107240"/>
          <exon e_start="107157" e_stop="107064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCGTTACCAGGAGGATAAAATTATTTTAAAGCAATATGCCGAAAATGATCAGGTTGTTGACAATGGAAAGGTGATCAGATCTCAGTCTGAGGTTTTCCCCGCATTGTCTGATAATCACCAACCTATTGTCAGACCCCTGATTAGGTTGCAAGATAGAAACATTATTCTTACTCGTATTAATCCAATGGTATGTGGACTTTGTACTCTATCGTCTATACCATGTTATCCCTGTTTTGTTAATCGTGTCATTTATGGTCCACTGATGACTAGTTGACAGCCAGATGAGGAATGCAAGTCATTTGTAGTCTTACGTTTACTGTTGAAAGGGGTTCAGTGATAGGACTATCCATTTCTTTCTCCCCTTCCTCTTTTGCATTAAACTGTTTTATGGTCTGTAGCTTTATCATACTTTTTTTGGGGGGATGCATCACATATTCTTTCCATGGCAGATCCGTGATACTAGTGTTCTTGTGAGATTGAGACCTGCTTGGGAGGATCTCCGCAGCTATCTGACTGCAAGGGGTCGGAAGCGCTTTGAAGTTTATGTGTGCACAATGGCTGAAAGAGATTATGCTTTAGAAATGTGGCGCCTTCTTGATCCAGATTCAAACTTGATTAACTCACAAGAACTCTTGGATCGTATTGTCTGTGTCAAGTCTGGCAAGTTTCTAAATTACAAAACTTTCGCTAGTGCATTGTTCTTTTTCTCTCTAATCACTGACTTTTCATGATTATTTTGTAGGCTTGAGGAAATCTTTGTTCAATGTATTCCAAGATGGAAATTGTCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGA</genome_strand>
        <mrna_strand>TCAAGCGTTACCAGGAGGATAAAATTATTTTAAAGCAATATGCCGAAAATGATCAGGTTGTTGACAATGGAAAGGTGATCAGATCTCAGTCTGAGGTTTTCCCCGCATTGTCTGATAATCACCAACCTATTGTCAGACCCCTGATTAGGTTGCAAGATAGAAACATTATTCTTACTCGTATTAATCCAATG......................................................................................................................................................................................................................................................................ATCCGTGATACTAGTGTTCTTGTGAGATTGAGACCTGCTTGGGAGGATCTCCGCAGCTATCTGACTGCAAGGGGTCGGAAGCGCTTTGAAGTTTATGTGTGCACAATGGCTGAAAGAGATTATGCTTTAGAAATGTGGCGCCTTCTTGATCCAGATTCAAACTTGATTAACTCACAAGAACTCTTGGATCGTATTGTCTGTGTCAAGTCTG..................................................................................GCTTGAGGAAATCTTTGTTCAATGTATTCCAAGATGGAAATTGTCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>137</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4849" PGL_stop="13723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4849" e_stop="5057"/>
            <exon e_start="5530" e_stop="5697"/>
            <exon e_start="6364" e_stop="6432"/>
            <exon e_start="7001" e_stop="7094"/>
            <exon e_start="7263" e_stop="7363"/>
            <exon e_start="7495" e_stop="7543"/>
            <exon e_start="7622" e_stop="7681"/>
            <exon e_start="8358" e_stop="8426"/>
            <exon e_start="8738" e_stop="8821"/>
            <exon e_start="8917" e_stop="9000"/>
            <exon e_start="9340" e_stop="9425"/>
            <exon e_start="9774" e_stop="9864"/>
            <exon e_start="10620" e_stop="10700"/>
            <exon e_start="10952" e_stop="11026"/>
            <exon e_start="11122" e_stop="11467"/>
            <exon e_start="11908" e_stop="12158"/>
            <exon e_start="12251" e_stop="12350"/>
            <exon e_start="12467" e_stop="12547"/>
            <exon e_start="12893" e_stop="12997"/>
            <exon e_start="13089" e_stop="13625"/>
            <exon e_start="13713" e_stop="13723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.802" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.434" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.704" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.697" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.354" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.619" e_score="0.983"/>
          <exon-only e_score="0.727"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4849" e_stop="5057" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.933">
            <gDNA_intron_boundary i_start="5058" i_stop="5529" i_length="472"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5530" e_stop="5697" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.968">
            <gDNA_intron_boundary i_start="5698" i_stop="6363" i_length="666"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6364" e_stop="6432" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.970">
            <gDNA_intron_boundary i_start="6433" i_stop="7000" i_length="568"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7001" e_stop="7094" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.964" acc_prob="0.802">
            <gDNA_intron_boundary i_start="7095" i_stop="7262" i_length="168"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7263" e_stop="7363" e_length="101"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.833">
            <gDNA_intron_boundary i_start="7364" i_stop="7494" i_length="131"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7495" e_stop="7543" e_length="49"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.993">
            <gDNA_intron_boundary i_start="7544" i_stop="7621" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="7622" e_stop="7681" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7682" i_stop="8357" i_length="676"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="8358" e_stop="8426" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.954" acc_prob="0.980">
            <gDNA_intron_boundary i_start="8427" i_stop="8737" i_length="311"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="8738" e_stop="8821" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.434" acc_prob="0.998">
            <gDNA_intron_boundary i_start="8822" i_stop="8916" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="8917" e_stop="9000" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.787" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9001" i_stop="9339" i_length="339"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="9340" e_stop="9425" e_length="86"/>
          </exon>
          <intron i_serial="11" don_prob="0.987" acc_prob="0.954">
            <gDNA_intron_boundary i_start="9426" i_stop="9773" i_length="348"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="9774" e_stop="9864" e_length="91"/>
          </exon>
          <intron i_serial="12" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="9865" i_stop="10619" i_length="755"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="10620" e_stop="10700" e_length="81"/>
          </exon>
          <intron i_serial="13" don_prob="0.704" acc_prob="0.966">
            <gDNA_intron_boundary i_start="10701" i_stop="10951" i_length="251"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="10952" e_stop="11026" e_length="75"/>
          </exon>
          <intron i_serial="14" don_prob="0.697" acc_prob="0.998">
            <gDNA_intron_boundary i_start="11027" i_stop="11121" i_length="95"/>
          </intron>
          <exon e_serial="15" e_score="0.997">
            <gDNA_exon_boundary e_start="11122" e_stop="11467" e_length="346"/>
          </exon>
          <intron i_serial="15" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11468" i_stop="11907" i_length="440"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="11908" e_stop="12158" e_length="251"/>
          </exon>
          <intron i_serial="16" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12159" i_stop="12250" i_length="92"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="12251" e_stop="12350" e_length="100"/>
          </exon>
          <intron i_serial="17" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12351" i_stop="12466" i_length="116"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="12467" e_stop="12547" e_length="81"/>
          </exon>
          <intron i_serial="18" don_prob="1.000" acc_prob="0.957">
            <gDNA_intron_boundary i_start="12548" i_stop="12892" i_length="345"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="12893" e_stop="12997" e_length="105"/>
          </exon>
          <intron i_serial="19" don_prob="0.991" acc_prob="0.354">
            <gDNA_intron_boundary i_start="12998" i_stop="13088" i_length="91"/>
          </intron>
          <exon e_serial="20" e_score="0.983">
            <gDNA_exon_boundary e_start="13089" e_stop="13625" e_length="537"/>
          </exon>
          <intron i_serial="20" don_prob="0.000" acc_prob="0.619">
            <gDNA_intron_boundary i_start="13626" i_stop="13712" i_length="87"/>
          </intron>
          <exon e_serial="21" e_score="0.727">
            <gDNA_exon_boundary e_start="13713" e_stop="13723" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4849" stop="5057"/>
              <exon start="5530" stop="5697"/>
              <exon start="6364" stop="6432"/>
              <exon start="7001" stop="7094"/>
              <exon start="7263" stop="7363"/>
              <exon start="7495" stop="7543"/>
              <exon start="7622" stop="7669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4850" stop="5057"/>
              <exon start="5530" stop="5697"/>
              <exon start="6364" stop="6432"/>
              <exon start="7001" stop="7094"/>
              <exon start="7263" stop="7270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4853" stop="5057"/>
              <exon start="5530" stop="5697"/>
              <exon start="6364" stop="6432"/>
              <exon start="7001" stop="7094"/>
              <exon start="7263" stop="7363"/>
              <exon start="7495" stop="7543"/>
              <exon start="7622" stop="7681"/>
              <exon start="8358" stop="8426"/>
              <exon start="8738" stop="8821"/>
              <exon start="8917" stop="9000"/>
              <exon start="9340" stop="9425"/>
              <exon start="9774" stop="9864"/>
              <exon start="10620" stop="10700"/>
              <exon start="10952" stop="11026"/>
              <exon start="11122" stop="11467"/>
              <exon start="11908" stop="11923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6404" stop="6432"/>
              <exon start="7001" stop="7094"/>
              <exon start="7263" stop="7363"/>
              <exon start="7495" stop="7543"/>
              <exon start="7622" stop="7681"/>
              <exon start="8358" stop="8426"/>
              <exon start="8738" stop="8821"/>
              <exon start="8917" stop="9000"/>
              <exon start="9340" stop="9425"/>
              <exon start="9774" stop="9818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7266" stop="7363"/>
              <exon start="7495" stop="7543"/>
              <exon start="7622" stop="7681"/>
              <exon start="8358" stop="8403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8368" stop="8426"/>
              <exon start="8738" stop="8821"/>
              <exon start="8917" stop="9000"/>
              <exon start="9340" stop="9425"/>
              <exon start="9774" stop="9864"/>
              <exon start="10620" stop="10700"/>
              <exon start="10952" stop="10979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8779" stop="8821"/>
              <exon start="8917" stop="9000"/>
              <exon start="9340" stop="9425"/>
              <exon start="9774" stop="9864"/>
              <exon start="10620" stop="10700"/>
              <exon start="10952" stop="11026"/>
              <exon start="11122" stop="11467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8787" stop="8821"/>
              <exon start="8917" stop="9000"/>
              <exon start="9340" stop="9425"/>
              <exon start="9774" stop="9864"/>
              <exon start="10620" stop="10700"/>
              <exon start="10952" stop="11026"/>
              <exon start="11122" stop="11221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8787" stop="8821"/>
              <exon start="8917" stop="9000"/>
              <exon start="9340" stop="9425"/>
              <exon start="9774" stop="9864"/>
              <exon start="10620" stop="10646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11919" stop="12158"/>
              <exon start="12251" stop="12350"/>
              <exon start="12467" stop="12547"/>
              <exon start="12893" stop="12997"/>
              <exon start="13089" stop="13271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11919" stop="12158"/>
              <exon start="12251" stop="12298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11976" stop="12158"/>
              <exon start="12251" stop="12350"/>
              <exon start="12467" stop="12547"/>
              <exon start="12893" stop="12997"/>
              <exon start="13089" stop="13148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12508" stop="12547"/>
              <exon start="12893" stop="12997"/>
              <exon start="13089" stop="13625"/>
              <exon start="13713" stop="13723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372239" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAATTAGGGGAGAATCATCATCATTCAACAACAGCTAAAACCCTAGATTGAGAAATTGAAGTATTGAAAACCTTTATTTGATCTATAACAACAATGCCGCAAGTGAAGATCGTCGCCAGGAATTTCATGGACATGGTGGCTTCATTGCCTGTCATGAAACTCGACATGCTTTACGACAATTCCTTTATCTGTGAAGCCATTCTTAG : ATCGTTACCTCCCTTAGCGAAGAAGTATGTGCTGCAAATGTTGTATATAGACATACCAATTACAGCCAAGTCGATGGAGGAGTGGGTGCTTCCAGATGGATTCTCAAAGCATAAAGTTGCCATTGATAGATTGATACAGCTGAGAGTAATGACAGAAACATTTGACAG : GAAAAAGGAAGCCATGTATCAACTAAACCCAAAATTTCAATTTAATCTTCAGAAGCATATAGTCTATGG : TGGAGTCTTACCAAGGGAACCAATGCCTTCTAATATCACTGTGAGGCTTCCTAGCTTGGAGGAGTTAGAGGCATATGCTGTCGAACAATGGGAG : TGCTTTCTGCTGAACCTTATAAGCTCCAGTGAAGCTGGAAAGACCACAAACATAAGCTCTTCGATGATGAAAATCTTCCAGCGTGGACTTTTAAGTCAGAG : AGACGATAGAGAACCTCCAAGGTTGACTGAAAGTGGGTTCCAATTCTTG : CTAATGGACACAAATGCACAGCTTTGGTACATCATCAGGGAGTACATAACAAATGCTGAG : GAGCGAGGAGTGGATTCAGCAGATCTTATTGCATTTCTTTTGGAGCTAAGCTTTCATGTTACTGGCAAG : GCATACAATACAAACACAATAACTGATCTCCAGAGAAGTATAATTAAGGACCTTTCAGATTTGGGATTGGTCAAGCTGCAGCAG : GGAAGGAAAGAGAGTTGGTTTATTCCGACCAAACTGGCGACCAACCTGTCAATTAGCTTAGCGGATACAACTACTAGGAAACAG : GGTTTTATCGTTATTGAAACAAACTTCAGACTGTATGCATATTCAACATCAAAATTGCACTGTGAGATCCTACGCCTTTTTGCAAG : GGTGGAATACCAGCTTCCAAATCTCATTGTTGGTGCTATTAATAAAGAGAGTTTATATAAAGCTTTTCAAAACGGCATTACTTCTGAGCAG : ATAGTTTCTTTCCTTCAGCAGAATGCACATCCTAGGGTTGCCGAGAGAATACCATCTGTGCCGGAGAATGTTACTGATCAG : ATTAGATTGTGGGAATCTGATCTGAATCGGGTTGAGATGACGCCAGCCCACTTCTACGATGAATTCCCTTCTAAA : GATGTCTTTGAGGCTGCCTGTGATTTTGCCAGAGAATATGGAGGATTACTGTGGGAGGACTCTAAGCGCATGCGTCTCGTTGTTAAAGCTGATATTTTAGCCGAGATGAAGGAATTTCTTCGTCGTCAAAAGCAATAACTCTTCTTTGCATACTGTCTTCATTTAAATGAAGGGTTTCATCAGTTATGTCCATCTATATATTTATTCCCAACTTAACTTGTACATGAATTTTGTTGTGGGTGTATTGTATTTCATTGTGCTTCGATTTCCTTCTTTCGACACCTTGTGATGTTGTACTAATAATGGGACTACAAATCATCGTCAAAACTATTGATAGCCTAAAAGA : AAAAACATAACAACAATTTACCTAGCAAGTGCTCTTCTATTTCCCCTCCTAAGTGAATGAAACAGCTCCTGTTTAAAATTCAAGATGGTAAAACTTGTAAAGAGTTACCTGCGATTATCCCTCAAGATCACAAACATAACAATAGGATTTATGGGCATTGCAATGCTCATCTATGGTGTATGGATGATCAGAGTTTGGCAGCGCGATGCTGCCAACTCACCCTCATCCCCTGATTATGCTCAATTTCCTTG : GTTTATCCATGCATTTCTTGGTGTTGGCACTGCTTTGTGTGCAATCACTTTCCTTGGTCATGTTGCAGCAAGCACTGCCAATTCCTATTGCCTCTCATTT : TATATGTTCTTCATATTTGTGCTTCTTTTAGCAGAGATTGCAATTACAGCTGATGTTTTCTTGAACTCTGATTGGGAGAAG : GATTTGCCTGAAGATCCATCAGGAAGGTTTGATGATTTCAAGGATTTTGTGGACTCGAATAGCGATGTCTGCCAATGGATTACCCTGCTTTGTGTTCTAACACAG : GGATGTTGTATCTTATTGGCTACAATTCTAAGAACTCTTGGGCAAGTTAAGGAAAATAGTCATGAGTATGAAGGTGAATATGCAGAACCATCAGCTCCACTTCTTCGCCCTCCGCAACTGCCTCCAAATCCTCTGTATCCATATGTTATTGGTGAACCAGTTCATATTGAACCACATTCTGCCTACAAGAATGTTTGAGTTTTGGAAGACAATTGGTTTGATCCCTTTGTAAAACTATGAAATCTTGAAACCTCTCTTTTTGGCTTATTATGTTATTGAAGTCTGCAGAAGTTGAAGTGAATGAAGTTATCCTTTATGGAAAAATATGCTATGTAGCTTCTCCAATTGCTTAAGAATGAGCTTTGTTAATCAGAAACAGATGAGACCATTTTATGTATAATTAAGATTGTGAGTTTTGCAACTTTTATGTTTTTGAGTGGTATCATTTTTGTTTATTACAATGAACAATGATATTACATTGTTTATGCATGTTGAACTTCTTTGGACTTCTTCATATATTAAACTCTCCTAATGAAA : AAAAAGGGAAA</gDNA_template>
            <first_frame> Q  K  L  G  E  N  H  H  H  S  T  T  A  K  T  L  D  *  E  I  E  V  L  K  T  F  I  *  S  I  T  T  M  P  Q  V  K  I  V  A  R  N  F  M  D  M  V  A  S  L  P  V  M  K  L  D  M  L  Y  D  N  S  F  I  C  E  A  I  L  R :   S  L  P  P  L  A  K  K  Y  V  L  Q  M  L  Y  I  D  I  P  I  T  A  K  S  M  E  E  W  V  L  P  D  G  F  S  K  H  K  V  A  I  D  R  L  I  Q  L  R  V  M  T  E  T  F  D  R :   K  K  E  A  M  Y  Q  L  N  P  K  F  Q  F  N  L  Q  K  H  I  V  Y  G :   G  V  L  P  R  E  P  M  P  S  N  I  T  V  R  L  P  S  L  E  E  L  E  A  Y  A  V  E  Q  W  E  :  C  F  L  L  N  L  I  S  S  S  E  A  G  K  T  T  N  I  S  S  S  M  M  K  I  F  Q  R  G  L  L  S  Q  R :   D  D  R  E  P  P  R  L  T  E  S  G  F  Q  F  L  :  L  M  D  T  N  A  Q  L  W  Y  I  I  R  E  Y  I  T  N  A  E  :  E  R  G  V  D  S  A  D  L  I  A  F  L  L  E  L  S  F  H  V  T  G  K  :  A  Y  N  T  N  T  I  T  D  L  Q  R  S  I  I  K  D  L  S  D  L  G  L  V  K  L  Q  Q  :  G  R  K  E  S  W  F  I  P  T  K  L  A  T  N  L  S  I  S  L  A  D  T  T  T  R  K  Q  :  G  F  I  V  I  E  T  N  F  R  L  Y  A  Y  S  T  S  K  L  H  C  E  I  L  R  L  F  A  R :   V  E  Y  Q  L  P  N  L  I  V  G  A  I  N  K  E  S  L  Y  K  A  F  Q  N  G  I  T  S  E  Q  :  I  V  S  F  L  Q  Q  N  A  H  P  R  V  A  E  R  I  P  S  V  P  E  N  V  T  D  Q  :  I  R  L  W  E  S  D  L  N  R  V  E  M  T  P  A  H  F  Y  D  E  F  P  S  K  :  D  V  F  E  A  A  C  D  F  A  R  E  Y  G  G  L  L  W  E  D  S  K  R  M  R  L  V  V  K  A  D  I  L  A  E  M  K  E  F  L  R  R  Q  K  Q  *  L  F  F  A  Y  C  L  H  L  N  E  G  F  H  Q  L  C  P  S  I  Y  L  F  P  T  *  L  V  H  E  F  C  C  G  C  I  V  F  H  C  A  S  I  S  F  F  R  H  L  V  M  L  Y  *  *  W  D  Y  K  S  S  S  K  L  L  I  A  *  K   : K  K  H  N  N  N  L  P  S  K  C  S  S  I  S  P  P  K  *  M  K  Q  L  L  F  K  I  Q  D  G  K  T  C  K  E  L  P  A  I  I  P  Q  D  H  K  H  N  N  R  I  Y  G  H  C  N  A  H  L  W  C  M  D  D  Q  S  L  A  A  R  C  C  Q  L  T  L  I  P  *  L  C  S  I  S  L  :  V  Y  P  C  I  S  W  C  W  H  C  F  V  C  N  H  F  P  W  S  C  C  S  K  H  C  Q  F  L  L  P  L  I   : L  Y  V  L  H  I  C  A  S  F  S  R  D  C  N  Y  S  *  C  F  L  E  L  *  L  G  E   : G  F  A  *  R  S  I  R  K  V  *  *  F  Q  G  F  C  G  L  E  *  R  C  L  P  M  D  Y  P  A  L  C  S  N  T   : G  M  L  Y  L  I  G  Y  N  S  K  N  S  W  A  S  *  G  K  *  S  *  V  *  R  *  I  C  R  T  I  S  S  T  S  S  P  S  A  T  A  S  K  S  S  V  S  I  C  Y  W  *  T  S  S  Y  *  T  T  F  C  L  Q  E  C  L  S  F  G  R  Q  L  V  *  S  L  C  K  T  M  K  S  *  N  L  S  F  W  L  I  M  L  L  K  S  A  E  V  E  V  N  E  V  I  L  Y  G  K  I  C  Y  V  A  S  P  I  A  *  E  *  A  L  L  I  R  N  R  *  D  H  F  M  Y  N  *  D  C  E  F  C  N  F  Y  V  F  E  W  Y  H  F  C  L  L  Q  *  T  M  I  L  H  C  L  C  M  L  N  F  F  G  L  L  H  I  L  N  S  P  N  E   : K  K  G  K </first_frame>
            <second_frame>  R  N  *  G  R  I  I  I  I  Q  Q  Q  L  K  P  *  I  E  K  L  K  Y  *  K  P  L  F  D  L  *  Q  Q  C  R  K  *  R  S  S  P  G  I  S  W  T  W  W  L  H  C  L  S  *  N  S  T  C  F  T  T  I  P  L  S  V  K  P  F  L   : D  R  Y  L  P  *  R  R  S  M  C  C  K  C  C  I  *  T  Y  Q  L  Q  P  S  R  W  R  S  G  C  F  Q  M  D  S  Q  S  I  K  L  P  L  I  D  *  Y  S  *  E  *  *  Q  K  H  L  T   : G  K  R  K  P  C  I  N  *  T  Q  N  F  N  L  I  F  R  S  I  *  S  M   : V  E  S  Y  Q  G  N  Q  C  L  L  I  S  L  *  G  F  L  A  W  R  S  *  R  H  M  L  S  N  N  G  S :   A  F  C  *  T  L  *  A  P  V  K  L  E  R  P  Q  T  *  A  L  R  *  *  K  S  S  S  V  D  F  *  V  R   : E  T  I  E  N  L  Q  G  *  L  K  V  G  S  N  S  C :   *  W  T  Q  M  H  S  F  G  T  S  S  G  S  T  *  Q  M  L  R :   S  E  E  W  I  Q  Q  I  L  L  H  F  F  W  S  *  A  F  M  L  L  A  R :   H  T  I  Q  T  Q  *  L  I  S  R  E  V  *  L  R  T  F  Q  I  W  D  W  S  S  C  S  R :   E  G  K  R  V  G  L  F  R  P  N  W  R  P  T  C  Q  L  A  *  R  I  Q  L  L  G  N  R :   V  L  S  L  L  K  Q  T  S  D  C  M  H  I  Q  H  Q  N  C  T  V  R  S  Y  A  F  L  Q   : G  W  N  T  S  F  Q  I  S  L  L  V  L  L  I  K  R  V  Y  I  K  L  F  K  T  A  L  L  L  S  R :   *  F  L  S  F  S  R  M  H  I  L  G  L  P  R  E  Y  H  L  C  R  R  M  L  L  I  R :   L  D  C  G  N  L  I  *  I  G  L  R  *  R  Q  P  T  S  T  M  N  S  L  L  K :   M  S  L  R  L  P  V  I  L  P  E  N  M  E  D  Y  C  G  R  T  L  S  A  C  V  S  L  L  K  L  I  F  *  P  R  *  R  N  F  F  V  V  K  S  N  N  S  S  L  H  T  V  F  I  *  M  K  G  F  I  S  Y  V  H  L  Y  I  Y  S  Q  L  N  L  Y  M  N  F  V  V  G  V  L  Y  F  I  V  L  R  F  P  S  F  D  T  L  *  C  C  T  N  N  G  T  T  N  H  R  Q  N  Y  *  *  P  K  R  :  K  N  I  T  T  I  Y  L  A  S  A  L  L  F  P  L  L  S  E  *  N  S  S  C  L  K  F  K  M  V  K  L  V  K  S  Y  L  R  L  S  L  K  I  T  N  I  T  I  G  F  M  G  I  A  M  L  I  Y  G  V  W  M  I  R  V  W  Q  R  D  A  A  N  S  P  S  S  P  D  Y  A  Q  F  P  W :   F  I  H  A  F  L  G  V  G  T  A  L  C  A  I  T  F  L  G  H  V  A  A  S  T  A  N  S  Y  C  L  S  F  :  Y  M  F  F  I  F  V  L  L  L  A  E  I  A  I  T  A  D  V  F  L  N  S  D  W  E  K  :  D  L  P  E  D  P  S  G  R  F  D  D  F  K  D  F  V  D  S  N  S  D  V  C  Q  W  I  T  L  L  C  V  L  T  Q  :  G  C  C  I  L  L  A  T  I  L  R  T  L  G  Q  V  K  E  N  S  H  E  Y  E  G  E  Y  A  E  P  S  A  P  L  L  R  P  P  Q  L  P  P  N  P  L  Y  P  Y  V  I  G  E  P  V  H  I  E  P  H  S  A  Y  K  N  V  *  V  L  E  D  N  W  F  D  P  F  V  K  L  *  N  L  E  T  S  L  F  G  L  L  C  Y  *  S  L  Q  K  L  K  *  M  K  L  S  F  M  E  K  Y  A  M  *  L  L  Q  L  L  K  N  E  L  C  *  S  E  T  D  E  T  I  L  C  I  I  K  I  V  S  F  A  T  F  M  F  L  S  G  I  I  F  V  Y  Y  N  E  Q  *  Y  Y  I  V  Y  A  C  *  T  S  L  D  F  F  I  Y  *  T  L  L  M  K  :  K  K  G   </second_frame>
            <third_frame>   E  I  R  G  E  S  S  S  F  N  N  S  *  N  P  R  L  R  N  *  S  I  E  N  L  Y  L  I  Y  N  N  N  A  A  S  E  D  R  R  Q  E  F  H  G  H  G  G  F  I  A  C  H  E  T  R  H  A  L  R  Q  F  L  Y  L  *  S  H  S  *  :  I  V  T  S  L  S  E  E  V  C  A  A  N  V  V  Y  R  H  T  N  Y  S  Q  V  D  G  G  V  G  A  S  R  W  I  L  K  A  *  S  C  H  *  *  I  D  T  A  E  S  N  D  R  N  I  *  Q  :  E  K  G  S  H  V  S  T  K  P  K  I  S  I  *  S  S  E  A  Y  S  L  W  :  W  S  L  T  K  G  T  N  A  F  *  Y  H  C  E  A  S  *  L  G  G  V  R  G  I  C  C  R  T  M  G   : V  L  S  A  E  P  Y  K  L  Q  *  S  W  K  D  H  K  H  K  L  F  D  D  E  N  L  P  A  W  T  F  K  S  E  :  R  R  *  R  T  S  K  V  D  *  K  W  V  P  I  L   : A  N  G  H  K  C  T  A  L  V  H  H  Q  G  V  H  N  K  C  *   : G  A  R  S  G  F  S  R  S  Y  C  I  S  F  G  A  K  L  S  C  Y  W  Q   : G  I  Q  Y  K  H  N  N  *  S  P  E  K  Y  N  *  G  P  F  R  F  G  I  G  Q  A  A  A   : G  K  E  R  E  L  V  Y  S  D  Q  T  G  D  Q  P  V  N  *  L  S  G  Y  N  Y  *  E  T   : G  F  Y  R  Y  *  N  K  L  Q  T  V  C  I  F  N  I  K  I  A  L  *  D  P  T  P  F  C  K  :  G  G  I  P  A  S  K  S  H  C  W  C  Y  *  *  R  E  F  I  *  S  F  S  K  R  H  Y  F  *  A   : D  S  F  F  P  S  A  E  C  T  S  *  G  C  R  E  N  T  I  C  A  G  E  C  Y  *  S   : D  *  I  V  G  I  *  S  E  S  G  *  D  D  A  S  P  L  L  R  *  I  P  F  *   : R  C  L  *  G  C  L  *  F  C  Q  R  I  W  R  I  T  V  G  G  L  *  A  H  A  S  R  C  *  S  *  Y  F  S  R  D  E  G  I  S  S  S  S  K  A  I  T  L  L  C  I  L  S  S  F  K  *  R  V  S  S  V  M  S  I  Y  I  F  I  P  N  L  T  C  T  *  I  L  L  W  V  Y  C  I  S  L  C  F  D  F  L  L  S  T  P  C  D  V  V  L  I  M  G  L  Q  I  I  V  K  T  I  D  S  L  K  E :   K  T  *  Q  Q  F  T  *  Q  V  L  F  Y  F  P  S  *  V  N  E  T  A  P  V  *  N  S  R  W  *  N  L  *  R  V  T  C  D  Y  P  S  R  S  Q  T  *  Q  *  D  L  W  A  L  Q  C  S  S  M  V  Y  G  *  S  E  F  G  S  A  M  L  P  T  H  P  H  P  L  I  M  L  N  F  L   : G  L  S  M  H  F  L  V  L  A  L  L  C  V  Q  S  L  S  L  V  M  L  Q  Q  A  L  P  I  P  I  A  S  H  F :   I  C  S  S  Y  L  C  F  F  *  Q  R  L  Q  L  Q  L  M  F  S  *  T  L  I  G  R  R :   I  C  L  K  I  H  Q  E  G  L  M  I  S  R  I  L  W  T  R  I  A  M  S  A  N  G  L  P  C  F  V  F  *  H  R :   D  V  V  S  Y  W  L  Q  F  *  E  L  L  G  K  L  R  K  I  V  M  S  M  K  V  N  M  Q  N  H  Q  L  H  F  F  A  L  R  N  C  L  Q  I  L  C  I  H  M  L  L  V  N  Q  F  I  L  N  H  I  L  P  T  R  M  F  E  F  W  K  T  I  G  L  I  P  L  *  N  Y  E  I  L  K  P  L  F  L  A  Y  Y  V  I  E  V  C  R  S  *  S  E  *  S  Y  P  L  W  K  N  M  L  C  S  F  S  N  C  L  R  M  S  F  V  N  Q  K  Q  M  R  P  F  Y  V  *  L  R  L  *  V  L  Q  L  L  C  F  *  V  V  S  F  L  F  I  T  M  N  N  D  I  T  L  F  M  H  V  E  L  L  W  T  S  S  Y  I  K  L  S  *  *  K :   K  R  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4933" stop="5057"/>
                    <exon start="5530" stop="5697"/>
                    <exon start="6364" stop="6432"/>
                    <exon start="7001" stop="7094"/>
                    <exon start="7263" stop="7363"/>
                    <exon start="7495" stop="7543"/>
                    <exon start="7622" stop="7681"/>
                    <exon start="8358" stop="8426"/>
                    <exon start="8738" stop="8821"/>
                    <exon start="8917" stop="9000"/>
                    <exon start="9340" stop="9425"/>
                    <exon start="9774" stop="9864"/>
                    <exon start="10620" stop="10700"/>
                    <exon start="10952" stop="11026"/>
                    <exon start="11122" stop="11259"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1371</number_coding_nucleotides>
                  <number_encoded_amino_acids>457</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITTMPQVKIVARNFMDMVASLPVMKLDMLYDNSFICEAILRSLPPLAKKYVLQMLYIDIPITAKSMEEWVLPDGFSKHKVAIDRLIQLRVMTETFDRKKEAMYQLNPKFQFNLQKHIVYGGVLPREPMPSNITVRLPSLEELEAYAVEQWECFLLNLISSSEAGKTTNISSSMMKIFQRGLLSQRDDREPPRLTESGFQFLLMDTNAQLWYIIREYITNAEERGVDSADLIAFLLELSFHVTGKAYNTNTITDLQRSIIKDLSDLGLVKLQQGRKESWFIPTKLATNLSISLADTTTRKQGFIVIETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGAINKESLYKAFQNGITSEQIVSFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVEMTPAHFYDEFPSKDVFEAACDFAREYGGLLWEDSKRMRLVVKADILAEMKEFLRRQKQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11968" stop="12158"/>
                    <exon start="12251" stop="12350"/>
                    <exon start="12467" stop="12547"/>
                    <exon start="12893" stop="12997"/>
                    <exon start="13089" stop="13286"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSCLKFKMVKLVKSYLRLSLKITNITIGFMGIAMLIYGVWMIRVWQRDAANSPSSPDYAQFPWFIHAFLGVGTALCAITFLGHVAASTANSYCLSFYMFFIFVLLLAEIAITADVFLNSDWEKDLPEDPSGRFDDFKDFVDSNSDVCQWITLLCVLTQGCCILLATILRTLGQVKENSHEYEGEYAEPSAPLLRPPQLPPNPLYPYVIGEPVHIEPHSAYKNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18316" PGL_stop="13725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18316" e_stop="17984"/>
            <exon e_start="16903" e_stop="16753"/>
            <exon e_start="16650" e_stop="16584"/>
            <exon e_start="16482" e_stop="16248"/>
            <exon e_start="14311" e_stop="13725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.834" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.764" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18316" e_stop="17984" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16903" e_stop="16753" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.989">
            <gDNA_intron_boundary i_start="16752" i_stop="16651" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16650" e_stop="16584" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.834">
            <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16482" e_stop="16248" e_length="235"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.764">
            <gDNA_intron_boundary i_start="16247" i_stop="14312" i_length="1936"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14311" e_stop="13725" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18316" stop="17984"/>
              <exon start="16903" stop="16819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18308" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16248"/>
              <exon start="14311" stop="14236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18300" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18275" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16248"/>
              <exon start="14311" stop="13745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18274" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18274" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18274" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18268" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18252" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18153" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18092" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16248"/>
              <exon start="14311" stop="14011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18063" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18063" stop="17984"/>
              <exon start="16903" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16889" stop="16753"/>
              <exon start="16650" stop="16584"/>
              <exon start="16482" stop="16248"/>
              <exon start="14311" stop="13917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16383" stop="16248"/>
              <exon start="14311" stop="13749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16382" stop="16248"/>
              <exon start="14311" stop="13749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14290" stop="13725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14148" stop="13733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353166" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCATTCTGTACAGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT : GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAGCAGCGCACCTGTTCCTTTTCTTAGTCCAGTGGACTGATTGCCACCTTGCTGGTGCACTTGGATTGTTGAGAATTCTTATTTACAAG : GTTTATGTTGATGGCACCACAACCATGTCAGTTCATGAAAGGAAAGCAAGCATTAGGGAGTTCTATG : CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATG : GCGTTCAAGGTCACAATCCTGCCCTTTTTGCCGCGATAGCCTTAAAAGGGTTAACTCCAGTGATCTGTGGGTATACATGGACAACAAAGACATCGTGGACATGTCAATGATAACAAGGGAGAATCTGAGGCGGCTATTCATGTTTATAGATAAGCTACCCTTGATCGTGCCAGATAATGTTTTTGATCACTATGATACTCATATAAGGTAGATGATCAATGCTTCCATTGGGGGATTGAATCATACTAAAGATAAAGTAATTGGTCTCGCTAGATTTAGAAATGCAGGTGGATTACTTTATCACCTTTCCTGATTTAGAAGAACCCGACCGAGTCATTGTGGTGCAGGGGTTGAAGCTAAGTTAGATAAGATTAGCCAAAAAAAAATGGAGCTTTTTAATTGCATCTCCTAATTTGTACATGCCTGTACAGTTCCAGTTTTACTTCTTGAAAACACAATTGTTGTTTGTTTTCTGATCTTCAAGTATGCCATGAATACCAGCATTTGAGCTTTCTCAAGTGCAGAGTTGTATGGTTGCTATTTATAAGAATGTATAATATATGATGTATTTAGTTTCCAATCTGTAA</gDNA_template>
            <first_frame> L  H  S  V  Q  *  K  K  L  *  K  R  K  K  K  Q  S  H  Q  N  L  G  K  I  L  T  R  E  S  N  R  F  *  F  E  E  K  K  G  W  C  *  S  G  F  V  M  V  R  S  V  W  L  *  V  K  F  V  F  S  F  L  G  F  G  W  L  E  *  R  A  K  E  K  E  N  C  R  Y  E  *  R  R  N  W  N  W  R  A  N  A  K  V  F  *  G  L  S  *  S  S  *  S  *  Y  S  A  C  *  Y  S  :  G  I  *  L  S  P  R  V  R  W  G  L  P  T  D  E  N  V  L  Q  S  S  S  A  P  V  P  F  L  S  P  V  D  *  L  P  P  C  W  C  T  W  I  V  E  N  S  Y  L  Q   : G  L  C  *  W  H  H  N  H  V  S  S  *  K  E  S  K  H  *  G  V  L  C :   C  Y  L  S  L  L  T  S  T  *  K  R  C  Y  G  F  R  R  Q  K  A  K  S  S  L  P  G  E  I  Q  E  K  R  *  *  G  L  Q  T  I  F  *  L  *  H  *  K  G  R  G  M  W  N  L  H  G  N  E  Q  Q  N  C  P  S  Q  M  Q  S  R  P  V  F  E  M  L  S  *  M  :  A  F  K  V  T  I  L  P  F  L  P  R  *  P  *  K  G  *  L  Q  *  S  V  G  I  H  G  Q  Q  R  H  R  G  H  V  N  D  N  K  G  E  S  E  A  A  I  H  V  Y  R  *  A  T  L  D  R  A  R  *  C  F  *  S  L  *  Y  S  Y  K  V  D  D  Q  C  F  H  W  G  I  E  S  Y  *  R  *  S  N  W  S  R  *  I  *  K  C  R  W  I  T  L  S  P  F  L  I  *  K  N  P  T  E  S  L  W  C  R  G  *  S  *  V  R  *  D  *  P  K  K  N  G  A  F  *  L  H  L  L  I  C  T  C  L  Y  S  S  S  F  T  S  *  K  H  N  C  C  L  F  S  D  L  Q  V  C  H  E  Y  Q  H  L  S  F  L  K  C  R  V  V  W  L  L  F  I  R  M  Y  N  I  *  C  I  *  F  P  I  C   </first_frame>
            <second_frame>  F  I  L  Y  S  K  R  S  C  E  K  E  R  R  N  R  V  I  K  I  W  G  K  F  L  Q  E  N  R  I  D  F  D  L  R  K  K  R  G  G  V  E  V  D  L  *  W  *  G  V  F  G  C  E  *  N  S  F  F  L  F  W  V  L  G  G  W  S  K  E  R  K  R  R  K  I  A  G  M  N  R  G  G  I  G  I  G  G  P  M  R  K  S  F  K  D  S  L  K  V  L  E  A  D  I  Q  H  A  N  T  L :   A  S  D  F  P  R  E  Y  D  G  A  C  L  Q  M  R  M  S  Y  S  P  A  A  H  L  F  L  F  L  V  Q  W  T  D  C  H  L  A  G  A  L  G  L  L  R  I  L  I  Y  K  :  V  Y  V  D  G  T  T  T  M  S  V  H  E  R  K  A  S  I  R  E  F  Y   : A  V  I  Y  P  S  L  L  Q  L  E  R  G  V  T  D  S  E  D  K  K  Q  K  A  V  C  Q  E  R  Y  R  R  R  D  D  E  D  Y  R  Q  S  S  D  S  D  I  E  R  E  E  E  C  G  I  C  M  E  M  N  S  K  I  V  L  P  K  C  N  H  A  L  C  L  K  C  Y  R  E  W :   R  S  R  S  Q  S  C  P  F  C  R  D  S  L  K  R  V  N  S  S  D  L  W  V  Y  M  D  N  K  D  I  V  D  M  S  M  I  T  R  E  N  L  R  R  L  F  M  F  I  D  K  L  P  L  I  V  P  D  N  V  F  D  H  Y  D  T  H  I  R  *  M  I  N  A  S  I  G  G  L  N  H  T  K  D  K  V  I  G  L  A  R  F  R  N  A  G  G  L  L  Y  H  L  S  *  F  R  R  T  R  P  S  H  C  G  A  G  V  E  A  K  L  D  K  I  S  Q  K  K  M  E  L  F  N  C  I  S  *  F  V  H  A  C  T  V  P  V  L  L  L  E  N  T  I  V  V  C  F  L  I  F  K  Y  A  M  N  T  S  I  *  A  F  S  S  A  E  L  Y  G  C  Y  L  *  E  C  I  I  Y  D  V  F  S  F  Q  S  V  </second_frame>
            <third_frame>   S  F  C  T  V  K  E  A  V  K  K  K  E  E  T  E  S  S  K  F  G  E  N  S  Y  K  R  I  E  *  I  L  I  *  G  K  K  G  V  V  L  K  W  I  C  D  G  K  E  C  L  V  V  S  K  I  R  F  F  F  F  G  F  W  V  V  G  V  K  S  E  R  E  G  K  L  Q  V  *  I  E  E  E  L  E  L  E  G  Q  C  E  S  L  L  R  T  L  L  K  F  L  K  L  I  F  S  M  L  I  L   : W  H  L  T  F  P  E  S  T  M  G  P  A  Y  R  *  E  C  P  T  V  Q  Q  R  T  C  S  F  S  *  S  S  G  L  I  A  T  L  L  V  H  L  D  C  *  E  F  L  F  T  R :   F  M  L  M  A  P  Q  P  C  Q  F  M  K  G  K  Q  A  L  G  S  S  M  :  L  L  F  I  P  P  Y  F  N  L  K  E  V  L  R  I  Q  K  T  K  S  K  K  Q  F  A  R  R  D  T  G  E  E  M  M  R  I  T  D  N  L  L  T  L  T  L  K  G  K  R  N  V  E  S  A  W  K  *  T  A  K  L  S  F  P  N  A  I  T  P  C  V  *  N  A  I  V  N   : G  V  Q  G  H  N  P  A  L  F  A  A  I  A  L  K  G  L  T  P  V  I  C  G  Y  T  W  T  T  K  T  S  W  T  C  Q  *  *  Q  G  R  I  *  G  G  Y  S  C  L  *  I  S  Y  P  *  S  C  Q  I  M  F  L  I  T  M  I  L  I  *  G  R  *  S  M  L  P  L  G  D  *  I  I  L  K  I  K  *  L  V  S  L  D  L  E  M  Q  V  D  Y  F  I  T  F  P  D  L  E  E  P  D  R  V  I  V  V  Q  G  L  K  L  S  *  I  R  L  A  K  K  K  W  S  F  L  I  A  S  P  N  L  Y  M  P  V  Q  F  Q  F  Y  F  L  K  T  Q  L  L  F  V  F  *  S  S  S  M  P  *  I  P  A  F  E  L  S  Q  V  Q  S  C  M  V  A  I  Y  K  N  V  *  Y  M  M  Y  L  V  S  N  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18150" stop="17984"/>
                    <exon start="16903" stop="16753"/>
                    <exon start="16650" stop="16584"/>
                    <exon start="16482" stop="16248"/>
                    <exon start="14311" stop="14101"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>828</number_coding_nucleotides>
                  <number_encoded_amino_acids>276</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSFFLFWVLGGWSKERKRRKIAGMNRGGIGIGGPMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSVHERKASIREFYAVIYPSLLQLERGVTDSEDKKQKAVCQERYRRRDDEDYRQSSDSDIEREEECGICMEMNSKIVLPKCNHALCLKCYREWRSRSQSCPFCRDSLKRVNSSDLWVYMDNKDIVDMSMITRENLRRLFMFIDKLPLIVPDNVFDHYDTHIR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18312" e_stop="17984"/>
            <exon e_start="16903" e_stop="16839"/>
            <exon e_start="16604" e_stop="16584"/>
            <exon e_start="16482" e_stop="16067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.834" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18312" e_stop="17984" e_length="329"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17983" i_stop="16904" i_length="1080"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16903" e_stop="16839" e_length="65"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16838" i_stop="16605" i_length="234"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16604" e_stop="16584" e_length="21"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.834">
            <gDNA_intron_boundary i_start="16583" i_stop="16483" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="16482" e_stop="16067" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18312" stop="17984"/>
              <exon start="16903" stop="16839"/>
              <exon start="16604" stop="16584"/>
              <exon start="16482" stop="16067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736848" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTGTACAGTAAAAGAAGCTGTGAAAAAGAAAGAAGAAACAGAGTCATCAAAATTTGGGGAAAATTCTTACAAGAGAATCGAATAGATTTTGATTTGAGGAAAAAAAGGGGTGGTGTTGAAGTGGATTTGTGATGGTAAGGAGTGTTTGGTTGTGAGTAAAATTCGTTTTTTCTTTTTTGGGTTTTGGGTGGTTGGAGTAAAGAGCGAAAGAGAAGGAAAATTGCAGGTATGAATAGAGGAGGAATTGGAATTGGAGGGCCAATGCGAAAGTCTTTTAAGGACTCTCTTAAAGTTCTTGAAGCTGATATTCAGCATGCTAATACTCT : GGCATCTGACTTTCCCCGAGAGTACGATGGGGCCTGCCTACAGATGAGAATGTCCTACAGTCCAG : CAAGCATTAGGGAGTTCTATG : CTGTTATTTATCCCTCCTTACTTCAACTTGAAAGAGGTGTTACGGATTCAGAAGACAAAAAGCAAAAAGCAGTTTGCCAGGAGAGATACAGGAGAAGAGATGATGAGGATTACAGACAATCTTCTGACTCTGACATTGAAAGGGAAGAGGAATGTGGAATCTGCATGGAAATGAACAGCAAAATTGTCCTTCCCAAATGCAATCACGCCCTGTGTTTGAAATGCTATCGTGAATGGTATGTTTAATTTTGCAGTTTGTCTGAGATAGAAGATGTGTGTTAAGTTTAACTACTATATTCAGATCTCTATCATCCCACGCCAACTCTACATTTCCTTTGCACTCTTTCTAACCCCCTTCATACACTTGAATGTTCACAGAACAGCTGTCGAGTGCTTCCTGGTGTGAGGTTCTGTGGG</gDNA_template>
            <first_frame> I  L  Y  S  K  R  S  C  E  K  E  R  R  N  R  V  I  K  I  W  G  K  F  L  Q  E  N  R  I  D  F  D  L  R  K  K  R  G  G  V  E  V  D  L  *  W  *  G  V  F  G  C  E  *  N  S  F  F  L  F  W  V  L  G  G  W  S  K  E  R  K  R  R  K  I  A  G  M  N  R  G  G  I  G  I  G  G  P  M  R  K  S  F  K  D  S  L  K  V  L  E  A  D  I  Q  H  A  N  T  L :   A  S  D  F  P  R  E  Y  D  G  A  C  L  Q  M  R  M  S  Y  S  P   : A  S  I  R  E  F  Y   : A  V  I  Y  P  S  L  L  Q  L  E  R  G  V  T  D  S  E  D  K  K  Q  K  A  V  C  Q  E  R  Y  R  R  R  D  D  E  D  Y  R  Q  S  S  D  S  D  I  E  R  E  E  E  C  G  I  C  M  E  M  N  S  K  I  V  L  P  K  C  N  H  A  L  C  L  K  C  Y  R  E  W  Y  V  *  F  C  S  L  S  E  I  E  D  V  C  *  V  *  L  L  Y  S  D  L  Y  H  P  T  P  T  L  H  F  L  C  T  L  S  N  P  L  H  T  L  E  C  S  Q  N  S  C  R  V  L  P  G  V  R  F  C  G </first_frame>
            <second_frame>  F  C  T  V  K  E  A  V  K  K  K  E  E  T  E  S  S  K  F  G  E  N  S  Y  K  R  I  E  *  I  L  I  *  G  K  K  G  V  V  L  K  W  I  C  D  G  K  E  C  L  V  V  S  K  I  R  F  F  F  F  G  F  W  V  V  G  V  K  S  E  R  E  G  K  L  Q  V  *  I  E  E  E  L  E  L  E  G  Q  C  E  S  L  L  R  T  L  L  K  F  L  K  L  I  F  S  M  L  I  L   : W  H  L  T  F  P  E  S  T  M  G  P  A  Y  R  *  E  C  P  T  V  Q  :  Q  A  L  G  S  S  M  :  L  L  F  I  P  P  Y  F  N  L  K  E  V  L  R  I  Q  K  T  K  S  K  K  Q  F  A  R  R  D  T  G  E  E  M  M  R  I  T  D  N  L  L  T  L  T  L  K  G  K  R  N  V  E  S  A  W  K  *  T  A  K  L  S  F  P  N  A  I  T  P  C  V  *  N  A  I  V  N  G  M  F  N  F  A  V  C  L  R  *  K  M  C  V  K  F  N  Y  Y  I  Q  I  S  I  I  P  R  Q  L  Y  I  S  F  A  L  F  L  T  P  F  I  H  L  N  V  H  R  T  A  V  E  C  F  L  V  *  G  S  V   </second_frame>
            <third_frame>   S  V  Q  *  K  K  L  *  K  R  K  K  K  Q  S  H  Q  N  L  G  K  I  L  T  R  E  S  N  R  F  *  F  E  E  K  K  G  W  C  *  S  G  F  V  M  V  R  S  V  W  L  *  V  K  F  V  F  S  F  L  G  F  G  W  L  E  *  R  A  K  E  K  E  N  C  R  Y  E  *  R  R  N  W  N  W  R  A  N  A  K  V  F  *  G  L  S  *  S  S  *  S  *  Y  S  A  C  *  Y  S  :  G  I  *  L  S  P  R  V  R  W  G  L  P  T  D  E  N  V  L  Q  S  S :   K  H  *  G  V  L  C :   C  Y  L  S  L  L  T  S  T  *  K  R  C  Y  G  F  R  R  Q  K  A  K  S  S  L  P  G  E  I  Q  E  K  R  *  *  G  L  Q  T  I  F  *  L  *  H  *  K  G  R  G  M  W  N  L  H  G  N  E  Q  Q  N  C  P  S  Q  M  Q  S  R  P  V  F  E  M  L  S  *  M  V  C  L  I  L  Q  F  V  *  D  R  R  C  V  L  S  L  T  T  I  F  R  S  L  S  S  H  A  N  S  T  F  P  L  H  S  F  *  P  P  S  Y  T  *  M  F  T  E  Q  L  S  S  A  S  W  C  E  V  L  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18150" stop="17984"/>
                    <exon start="16903" stop="16839"/>
                    <exon start="16604" stop="16584"/>
                    <exon start="16482" stop="16238"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSFFLFWVLGGWSKERKRRKIAGMNRGGIGIGGPMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPASIREFYAVIYPSLLQLERGVTDSEDKKQKAVCQERYRRRDDEDYRQSSDSDIEREEECGICMEMNSKIVLPKCNHALCLKCYREWYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="29980" PGL_stop="30536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29980" e_stop="30536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29980" e_stop="30536" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29980" stop="30536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGTGGATTTTCTTAGTGGGGTTGATGTAGAGATTGGTAATTTGAAGAAGGGTGTTAGGAAAGGAATTGAGAATAATCAAATTACTGTGGAAGATTTGGGAAGTTTCGAAAAGAGTCTGGAATCTATAAATTTTTCTGCTCTCAATGCTAGAAAGGTTATAGAAGGTTGTATTGAAAGCTTGTCAATTGATGGACAAGATATAGGGGGGGAAATCAGTCAAAAATCGAGTAAGAAGAAGAAGGAGCCGGGTAAATATGGCTTCGACTTCTTTCAGATTGCTGCTGGTCTGTTTCAAGCAAAGTCGGGTTCGAAGTCTACTAAAATGAAAGATCATGGTGACACTGAGTTAATGGACAGAAAGATGAATGGCCCTAAGCAAGGGAATATCTTGAGTTCTACTACTAAAGAAAGACATTTGAATTTTGATATGGATCTAGACGGCCTTAGTGGCACTTCAAGGCACAGTTTCAATGATGATGCCATTAGACAAGACAGAGTGGGTGAGACATTTGGGAAGGCTAGCAGAATGAATGTAGTTTCTGATGGAAATTTCA</gDNA_template>
            <first_frame> F  G  G  F  S  *  W  G  *  C  R  D  W  *  F  E  E  G  C  *  E  R  N  *  E  *  S  N  Y  C  G  R  F  G  K  F  R  K  E  S  G  I  Y  K  F  F  C  S  Q  C  *  K  G  Y  R  R  L  Y  *  K  L  V  N  *  W  T  R  Y  R  G  G  N  Q  S  K  I  E  *  E  E  E  G  A  G  *  I  W  L  R  L  L  S  D  C  C  W  S  V  S  S  K  V  G  F  E  V  Y  *  N  E  R  S  W  *  H  *  V  N  G  Q  K  D  E  W  P  *  A  R  E  Y  L  E  F  Y  Y  *  R  K  T  F  E  F  *  Y  G  S  R  R  P  *  W  H  F  K  A  Q  F  Q  *  *  C  H  *  T  R  Q  S  G  *  D  I  W  E  G  *  Q  N  E  C  S  F  *  W  K  F   </first_frame>
            <second_frame>  L  V  D  F  L  S  G  V  D  V  E  I  G  N  L  K  K  G  V  R  K  G  I  E  N  N  Q  I  T  V  E  D  L  G  S  F  E  K  S  L  E  S  I  N  F  S  A  L  N  A  R  K  V  I  E  G  C  I  E  S  L  S  I  D  G  Q  D  I  G  G  E  I  S  Q  K  S  S  K  K  K  K  E  P  G  K  Y  G  F  D  F  F  Q  I  A  A  G  L  F  Q  A  K  S  G  S  K  S  T  K  M  K  D  H  G  D  T  E  L  M  D  R  K  M  N  G  P  K  Q  G  N  I  L  S  S  T  T  K  E  R  H  L  N  F  D  M  D  L  D  G  L  S  G  T  S  R  H  S  F  N  D  D  A  I  R  Q  D  R  V  G  E  T  F  G  K  A  S  R  M  N  V  V  S  D  G  N  F  </second_frame>
            <third_frame>   W  W  I  F  L  V  G  L  M  *  R  L  V  I  *  R  R  V  L  G  K  E  L  R  I  I  K  L  L  W  K  I  W  E  V  S  K  R  V  W  N  L  *  I  F  L  L  S  M  L  E  R  L  *  K  V  V  L  K  A  C  Q  L  M  D  K  I  *  G  G  K  S  V  K  N  R  V  R  R  R  R  S  R  V  N  M  A  S  T  S  F  R  L  L  L  V  C  F  K  Q  S  R  V  R  S  L  L  K  *  K  I  M  V  T  L  S  *  W  T  E  R  *  M  A  L  S  K  G  I  S  *  V  L  L  L  K  K  D  I  *  I  L  I  W  I  *  T  A  L  V  A  L  Q  G  T  V  S  M  M  M  P  L  D  K  T  E  W  V  R  H  L  G  R  L  A  E  *  M  *  F  L  M  E  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29981" stop="30535"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVDFLSGVDVEIGNLKKGVRKGIENNQITVEDLGSFEKSLESINFSALNARKVIEGCIESLSIDGQDIGGEISQKSSKKKKEPGKYGFDFFQIAAGLFQAKSGSKSTKMKDHGDTELMDRKMNGPKQGNILSSTTKERHLNFDMDLDGLSGTSRHSFNDDAIRQDRVGETFGKASRMNVVSDGNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="30696" PGL_stop="31103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30696" e_stop="31103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="30696" e_stop="31103" e_length="408"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30696" stop="31103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324567" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATTCTATTGATTTTGGCGTCAGTATGGAGCAAAGCAATACTGAAGCATCTTCGTTGCATGAAAAGGACGTCGAGAATTTTGAAGGAGTAAGGAGCCATTTTGGTGGAAAAGAAAATGATGAAGACACCTACAGTCATTTTCTTGGAGAAGAGATGAGAAACCCTGAAAAGGAACCCTCCATGGGTAGAGATGAGGCCTCAAATGAATGTGAATCTGGTCACTCTCCATCTTCAGGAGGTTCCATTGATTTGCAATTTAATAAGTACCTTACTGAGGCAAATATTCTAGTACAAGAAGCAAAGGACTGTTTAAGGAGGCAAGACGGCGACAAGCATGCTGAGAATGCGTTTTACGAGTCTGCTGTATTGCTCTCAAAAGCTATAGATATCCGCCCCATGAGTTTAT</gDNA_template>
            <first_frame> L  I  L  L  I  L  A  S  V  W  S  K  A  I  L  K  H  L  R  C  M  K  R  T  S  R  I  L  K  E  *  G  A  I  L  V  E  K  K  M  M  K  T  P  T  V  I  F  L  E  K  R  *  E  T  L  K  R  N  P  P  W  V  E  M  R  P  Q  M  N  V  N  L  V  T  L  H  L  Q  E  V  P  L  I  C  N  L  I  S  T  L  L  R  Q  I  F  *  Y  K  K  Q  R  T  V  *  G  G  K  T  A  T  S  M  L  R  M  R  F  T  S  L  L  Y  C  S  Q  K  L  *  I  S  A  P  *  V  Y </first_frame>
            <second_frame>  *  F  Y  *  F  W  R  Q  Y  G  A  K  Q  Y  *  S  I  F  V  A  *  K  G  R  R  E  F  *  R  S  K  E  P  F  W  W  K  R  K  *  *  R  H  L  Q  S  F  S  W  R  R  D  E  K  P  *  K  G  T  L  H  G  *  R  *  G  L  K  *  M  *  I  W  S  L  S  I  F  R  R  F  H  *  F  A  I  *  *  V  P  Y  *  G  K  Y  S  S  T  R  S  K  G  L  F  K  E  A  R  R  R  Q  A  C  *  E  C  V  L  R  V  C  C  I  A  L  K  S  Y  R  Y  P  P  H  E  F   </second_frame>
            <third_frame>   D  S  I  D  F  G  V  S  M  E  Q  S  N  T  E  A  S  S  L  H  E  K  D  V  E  N  F  E  G  V  R  S  H  F  G  G  K  E  N  D  E  D  T  Y  S  H  F  L  G  E  E  M  R  N  P  E  K  E  P  S  M  G  R  D  E  A  S  N  E  C  E  S  G  H  S  P  S  S  G  G  S  I  D  L  Q  F  N  K  Y  L  T  E  A  N  I  L  V  Q  E  A  K  D  C  L  R  R  Q  D  G  D  K  H  A  E  N  A  F  Y  E  S  A  V  L  L  S  K  A  I  D  I  R  P  M  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30698" stop="31102"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSIDFGVSMEQSNTEASSLHEKDVENFEGVRSHFGGKENDEDTYSHFLGEEMRNPEKEPSMGRDEASNECESGHSPSSGGSIDLQFNKYLTEANILVQEAKDCLRRQDGDKHAENAFYESAVLLSKAIDIRPMSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31112" PGL_stop="32655"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31112" e_stop="31429"/>
            <exon e_start="31636" e_stop="31726"/>
            <exon e_start="32379" e_stop="32655"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31112" e_stop="31429" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.972">
            <gDNA_intron_boundary i_start="31430" i_stop="31635" i_length="206"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31636" e_stop="31726" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.936">
            <gDNA_intron_boundary i_start="31727" i_stop="32378" i_length="652"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="32379" e_stop="32655" e_length="277"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31112" stop="31429"/>
              <exon start="31636" stop="31726"/>
              <exon start="32379" stop="32655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACAGTTGGGAAATACTTACCTTCTTCATGGAGAACTTAAGTTAAGGATCAGCCGTGATTTGAGAGCTTTACTAACTGATGCTGTATCATTAAATAAACGGGCTAAAATACGTGATGCGCTAGATGATACGGTTCCAAGGGAAGACAAAATTACATCTTATCTTGTAAATGTATGTGAAGAGTGTGAAGAACTACTTATTAAGGCAGGAAGACAGTATAGGTTAGCCTTGTCGATAGATGGGAATGATATGAGAGCTTTGTATAATTGGGGAATTGCTCTCTCGTTGCGTGGGCAGTTGATTGCAGACATTGGACCT : GGTTCTGCACGTGATGCCGACAAAGTTTTCTTGGCTGCAATTGATAAGTTCGATGCAATGATCTCCAGAGGAAATGTATATGCACCTGATG : CTCTTTTCAGATGGGCCACAGCATTGCAGCACAGATCTCGCCTACGACCTAGAACAAGTAGAGAGAAGGTGAAGTTATTGCAGCAGGCTCAAAGGTTATACAAAGATGCCCTTCATATGGACTCCGATAACCTTCAAGCACGAAAGGCCCTGTCATCCTGCATATCTGAGCTCAAGTACTGGTATAGATAGTCATACAATAAATTTTAGTTATCCTTCTTTTTCTCCATTTGATAACATAAACCAAGTTTACATATTTATCAGTACCCATATGGTTG</gDNA_template>
            <first_frame> G  Q  L  G  N  T  Y  L  L  H  G  E  L  K  L  R  I  S  R  D  L  R  A  L  L  T  D  A  V  S  L  N  K  R  A  K  I  R  D  A  L  D  D  T  V  P  R  E  D  K  I  T  S  Y  L  V  N  V  C  E  E  C  E  E  L  L  I  K  A  G  R  Q  Y  R  L  A  L  S  I  D  G  N  D  M  R  A  L  Y  N  W  G  I  A  L  S  L  R  G  Q  L  I  A  D  I  G  P  :  G  S  A  R  D  A  D  K  V  F  L  A  A  I  D  K  F  D  A  M  I  S  R  G  N  V  Y  A  P  D   : A  L  F  R  W  A  T  A  L  Q  H  R  S  R  L  R  P  R  T  S  R  E  K  V  K  L  L  Q  Q  A  Q  R  L  Y  K  D  A  L  H  M  D  S  D  N  L  Q  A  R  K  A  L  S  S  C  I  S  E  L  K  Y  W  Y  R  *  S  Y  N  K  F  *  L  S  F  F  F  S  I  *  *  H  K  P  S  L  H  I  Y  Q  Y  P  Y  G   </first_frame>
            <second_frame>  D  S  W  E  I  L  T  F  F  M  E  N  L  S  *  G  S  A  V  I  *  E  L  Y  *  L  M  L  Y  H  *  I  N  G  L  K  Y  V  M  R  *  M  I  R  F  Q  G  K  T  K  L  H  L  I  L  *  M  Y  V  K  S  V  K  N  Y  L  L  R  Q  E  D  S  I  G  *  P  C  R  *  M  G  M  I  *  E  L  C  I  I  G  E  L  L  S  R  C  V  G  S  *  L  Q  T  L  D  L :   V  L  H  V  M  P  T  K  F  S  W  L  Q  L  I  S  S  M  Q  *  S  P  E  E  M  Y  M  H  L  M  :  L  F  S  D  G  P  Q  H  C  S  T  D  L  A  Y  D  L  E  Q  V  E  R  R  *  S  Y  C  S  R  L  K  G  Y  T  K  M  P  F  I  W  T  P  I  T  F  K  H  E  R  P  C  H  P  A  Y  L  S  S  S  T  G  I  D  S  H  T  I  N  F  S  Y  P  S  F  S  P  F  D  N  I  N  Q  V  Y  I  F  I  S  T  H  M  V  </second_frame>
            <third_frame>   T  V  G  K  Y  L  P  S  S  W  R  T  *  V  K  D  Q  P  *  F  E  S  F  T  N  *  C  C  I  I  K  *  T  G  *  N  T  *  C  A  R  *  Y  G  S  K  G  R  Q  N  Y  I  L  S  C  K  C  M  *  R  V  *  R  T  T  Y  *  G  R  K  T  V  *  V  S  L  V  D  R  W  E  *  Y  E  S  F  V  *  L  G  N  C  S  L  V  A  W  A  V  D  C  R  H  W  T   : W  F  C  T  *  C  R  Q  S  F  L  G  C  N  *  *  V  R  C  N  D  L  Q  R  K  C  I  C  T  *  C :   S  F  Q  M  G  H  S  I  A  A  Q  I  S  P  T  T  *  N  K  *  R  E  G  E  V  I  A  A  G  S  K  V  I  Q  R  C  P  S  Y  G  L  R  *  P  S  S  T  K  G  P  V  I  L  H  I  *  A  Q  V  L  V  *  I  V  I  Q  *  I  L  V  I  L  L  F  L  H  L  I  T  *  T  K  F  T  Y  L  S  V  P  I  W  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31112" stop="31429"/>
                    <exon start="31636" stop="31726"/>
                    <exon start="32379" stop="32569"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQLGNTYLLHGELKLRISRDLRALLTDAVSLNKRAKIRDALDDTVPREDKITSYLVNVCEECEELLIKAGRQYRLALSIDGNDMRALYNWGIALSLRGQLIADIGPGSARDADKVFLAAIDKFDAMISRGNVYAPDALFRWATALQHRSRLRPRTSREKVKLLQQAQRLYKDALHMDSDNLQARKALSSCISELKYWYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="34619" PGL_stop="35287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34619" e_stop="35287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="34619" e_stop="35287" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34619" stop="35287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547448" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCACCCCAACCCCCATACCCATACACCAATGGTTATCTTCTTCTCCCACCATTCTACTGATTTCAAAATTCTTAGTCTTAGTGTTTATCTTCTTCCCCCACCATTCTAAAGGTTTCAAAATTCTTAACATTTTGTTTCATTTATAAATTTTTTCGGAGAGATTTTTTTGCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAATAAAAAAGCTGATGAAAAAAAAATTGTTGGGTTAAAGATGGAACTGTATAGGGAGGGGAGGGAGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGGGCAGGGAAGTGGGTGTTTAAGTTTTATTTATTTTTTTCATTTTTTTTACTTTAAAATAATCTTTTAAATTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTAATTGGTCAAATTGACATGTCAGCACGAGTGTATTTCACACATCCTCTTTTTTTGTTTATTCTCGAAAAAATATTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTAAGTGGCCGCATATGACTTTGGCCTAAAAATATCTAT</gDNA_template>
            <first_frame> P  T  P  T  P  I  P  I  H  Q  W  L  S  S  S  P  T  I  L  L  I  S  K  F  L  V  L  V  F  I  F  F  P  H  H  S  K  G  F  K  I  L  N  I  L  F  H  L  *  I  F  S  E  R  F  F  C  P  S  F  S  T  *  K  T  R  *  S  K  K  L  *  L  I  K  K  L  M  K  K  K  L  L  G  *  R  W  N  C  I  G  R  G  G  R  V  A  I  N  G  V  R  G  N  V  C  F  V  P  V  E  G  A  G  K  W  V  F  K  F  Y  L  F  F  S  F  F  L  L  *  N  N  L  L  N  F  F  T  L  *  Y  N  V  *  I  I  F  W  I  K  K  *  H  M  S  L  F  N  W  S  N  *  H  V  S  T  S  V  F  H  T  S  S  F  F  V  Y  S  R  K  N  I  Q  M  V  Q  I  Q  N  G  *  S  V  Q  *  V  V  R  L  V  E  V  S  K  *  I  I  G  T  S  L  S  G  R  I  *  L  W  P  K  N  I  Y </first_frame>
            <second_frame>  P  P  Q  P  P  Y  P  Y  T  N  G  Y  L  L  L  P  P  F  Y  *  F  Q  N  S  *  S  *  C  L  S  S  S  P  T  I  L  K  V  S  K  F  L  T  F  C  F  I  Y  K  F  F  R  R  D  F  F  A  H  L  S  L  P  K  K  R  D  E  V  K  S  Y  N  *  *  K  S  *  *  K  K  N  C  W  V  K  D  G  T  V  *  G  G  E  G  G  S  P  L  M  E  L  E  E  M  Y  V  L  F  Q  L  K  G  Q  G  S  G  C  L  S  F  I  Y  F  F  H  F  F  Y  F  K  I  I  F  *  I  F  L  L  Y  N  I  M  F  K  *  F  F  G  L  K  N  N  T  C  H  Y  L  I  G  Q  I  D  M  S  A  R  V  Y  F  T  H  P  L  F  L  F  I  L  E  K  I  F  K  W  F  K  F  R  M  V  E  V  F  N  R  *  Y  V  *  L  R  C  L  N  E  *  S  G  Q  V  *  V  A  A  Y  D  F  G  L  K  I  S   </second_frame>
            <third_frame>   H  P  N  P  H  T  H  T  P  M  V  I  F  F  S  H  H  S  T  D  F  K  I  L  S  L  S  V  Y  L  L  P  P  P  F  *  R  F  Q  N  S  *  H  F  V  S  F  I  N  F  F  G  E  I  F  L  P  I  F  L  Y  L  K  N  E  M  K  *  K  V  I  I  N  K  K  A  D  E  K  K  I  V  G  L  K  M  E  L  Y  R  E  G  R  E  G  R  H  *  W  S  *  R  K  C  M  F  C  S  S  *  R  G  R  E  V  G  V  *  V  L  F  I  F  F  I  F  F  T  L  K  *  S  F  K  F  F  Y  F  I  I  *  C  L  N  N  F  L  D  *  K  I  T  H  V  I  I  *  L  V  K  L  T  C  Q  H  E  C  I  S  H  I  L  F  F  C  L  F  S  K  K  Y  S  N  G  S  N  S  E  W  L  K  C  S  I  G  S  T  S  S  *  G  V  *  M  N  N  R  D  K  F  K  W  P  H  M  T  L  A  *  K  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0065H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="37916" PGL_stop="34777"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37916" e_stop="37411"/>
            <exon e_start="36785" e_stop="35778"/>
            <exon e_start="35002" e_stop="34977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.808"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37916" e_stop="37411" e_length="506"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37410" i_stop="36786" i_length="625"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="36785" e_stop="35778" e_length="1008"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35777" i_stop="35003" i_length="775"/>
          </intron>
          <exon e_serial="3" e_score="0.808">
            <gDNA_exon_boundary e_start="35002" e_stop="34977" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37916" stop="37411"/>
              <exon start="36785" stop="36673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37916" stop="37659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37916" stop="37724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37915" stop="37411"/>
              <exon start="36785" stop="36674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37907" stop="37428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37907" stop="37685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37905" stop="37411"/>
              <exon start="36785" stop="36464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37895" stop="37411"/>
              <exon start="36785" stop="36393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37895" stop="37483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37894" stop="37411"/>
              <exon start="36785" stop="36570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37894" stop="37411"/>
              <exon start="36785" stop="36757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36771" stop="36044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36771" stop="36179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36472" stop="35891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36417" stop="35778"/>
              <exon start="35002" stop="34977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36376" stop="35785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36318" stop="35778"/>
              <exon start="35002" stop="34977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36274" stop="35778"/>
              <exon start="35002" stop="34977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36082" stop="35778"/>
              <exon start="35002" stop="34977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAG : CTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGG : TAAAAAAAATGAAAAAAATAAATAAA</gDNA_template>
            <first_frame> H  I  S  N  L  S  P  P  T  K  S  S  V  V  F  S  C  *  R  I  F  R  P  I  S  F  S  I  L  Y  R  I  F  F  F  L  Y  I  I  S  V  F  F  L  L  N  I  R  I  C  M  A  V  S  F  L  N  R  E  V  S  D  L  C  L  G  K  P  A  L  K  P  I  P  A  E  A  T  V  S  E  A  L  T  L  L  K  K  S  G  E  T  H  V  S  V  W  S  C  D  H  I  R  K  V  V  E  E  E  E  G  G  G  G  Y  S  V  C  R  C  I  G  K  I  C  M  V  D  V  I  C  F  L  C  T  E  E  N  L  A  D  P  S  K  A  L  Q  T  P  V  E  Q  I  L  P  K  G  N  S  I  V  R  H  L  D  P  N  S  S :   L  L  E  A  I  D  Y  I  L  E  G  A  Q  N  L  V  I  P  I  Q  N  S  K  S  T  P  S  R  K  K  L  S  S  K  A  S  F  L  T  P  T  N  H  N  G  V  E  Y  C  W  L  T  Q  E  D  I  V  R  F  L  L  N  S  I  G  V  F  S  P  M  P  T  F  S  I  E  S  L  N  I  I  N  H  D  M  M  T  V  S  Y  H  D  P  A  I  S  S  L  D  A  I  I  R  A  Y  I  E  Q  S  S  V  A  V  V  D  E  D  N  R  L  I  G  E  I  S  P  F  T  L  A  Y  C  D  E  T  V  A  A  A  I  A  T  L  S  A  G  D  L  M  T  Y  I  D  Y  G  G  P  P  E  D  L  I  E  L  V  K  M  R  L  Q  E  K  K  L  G  A  M  V  E  L  I  D  E  E  F  S  L  S  S  S  S  S  S  A  S  S  C  S  S  D  D  E  S  G  S  S  K  V  T  V  L  G  R  Y  S  S  A  R  R  S  E  A  I  T  C  Y  P  W  S  S  L  V  A  V  M  I  Q  A  L  A  H  R  A  N  S  I  W  V  M  D  E  D  H  N  L  I  G  V  V  T  F  K  G  I  L  E  V  F  R  S  I  A  N  A  K  R  K  P  E  R  E  N  T  S  K  Q  *  Y  T  I  K  C  H  I  C  *  V  N  F  F  L  N  V  I  I  F  I  V  F  Y  F  Y  F  Y  F  E  N  G  T  M  F  A  *  I  L  L  K  *  T  E  E  L  K  L  L  G :   K  K  N  E  K  N  K  *  </first_frame>
            <second_frame>  T  Y  L  T  Y  H  H  R  L  S  L  P  L  Y  F  P  V  K  E  F  S  G  R  S  L  S  L  F  Y  I  G  F  F  S  F  S  I  L  Y  R  Y  S  F  C  *  I  F  A  F  A  W  Q  *  V  F  *  I  G  R  Y  L  T  C  V  L  V  S  R  R  *  S  L  F  Q  L  K  L  L  Y  R  R  R  *  H  C  *  K  N  P  A  R  L  M  *  A  F  G  A  V  T  I  S  G  R  L  *  K  K  K  K  E  A  E  D  I  L  F  A  A  V  L  G  R  S  V  W  *  M  *  F  A  S  S  V  R  K  R  I  W  R  I  L  L  R  L  F  K  L  L  W  N  R  F  C  L  K  G  I  P  L  S  D  I  *  I  Q  I  L   : A  C  W  K  R  *  I  T  F  L  K  A  L  R  I  W  L  Y  Q  F  K  I  L  R  A  P  L  R  G  K  S  F  R  V  K  R  H  F  *  L  P  Q  I  I  T  E  L  N  T  V  G  *  R  R  K  T  L  S  G  S  F  *  T  P  L  E  S  S  L  P  C  L  L  F  Q  L  N  R  S  T  S  *  I  T  I  *  *  L  L  V  I  M  I  L  Q  F  L  L  W  M  P  *  F  G  R  I  L  S  R  A  Q  L  Q  L  L  M  K  T  T  D  *  L  V  K  S  L  P  S  L  *  P  T  V  M  R  P  L  Q  Q  Q  S  R  H  F  Q  L  V  I  S  *  L  T  S  T  T  V  V  L  Q  R  T  *  S  S  W  S  R  *  G  Y  K  K  R  N  L  G  Q  W  L  N  *  *  M  K  S  F  H  C  L  H  H  H  L  L  L  Q  A  V  H  Q  M  M  N  Q  A  Q  A  K  L  L  C  *  D  D  I  L  Q  Q  E  D  P  R  R  L  L  V  I  H  G  V  H  W  W  L  *  *  S  K  L  *  H  I  A  L  I  P  F  G  *  W  M  K  I  T  I  *  S  E  L  *  H  L  K  E  F  W  K  F  S  G  V  S  L  M  R  S  V  N  Q  K  G  R  I  H  Q  S  N  N  T  Q  L  N  A  T  Y  V  E  L  I  F  S  *  M  S  S  Y  L  L  C  S  I  F  I  F  I  L  K  M  G  L  C  L  H  K  F  C  L  N  E  L  K  N  *  N  F  L   : V  K  K  M  K  K  I  N  K </second_frame>
            <third_frame>   H  I  *  P  I  T  T  D  *  V  F  R  C  I  F  L  L  K  N  F  P  A  D  L  F  L  Y  F  I  S  D  F  F  L  S  L  Y  Y  I  G  I  L  S  V  E  Y  S  H  L  H  G  S  K  F  F  E  S  G  G  I  *  P  V  S  W  *  A  G  V  K  A  Y  S  S  *  S  Y  C  I  G  G  V  D  I  V  E  K  I  R  R  D  S  C  K  R  L  E  L  *  P  Y  Q  E  G  C  R  R  R  R  R  R  R  R  I  F  C  L  P  L  Y  W  E  D  L  Y  G  R  C  D  L  L  P  L  Y  G  R  E  F  G  G  S  F  *  G  S  S  N  S  C  G  T  D  F  A  *  R  E  F  H  C  Q  T  F  R  S  K  F  *  :  L  V  G  S  D  R  L  H  S  *  R  R  S  E  S  G  Y  T  N  S  K  F  *  E  H  P  F  E  E  K  A  F  E  *  S  V  I  F  D  S  H  K  S  *  R  S  *  I  L  L  A  N  A  G  R  H  C  P  V  P  S  E  L  H  W  S  L  L  S  H  A  Y  F  F  N  *  I  A  Q  H  H  K  S  R  Y  D  D  C  *  L  S  *  S  C  N  F  F  F  G  C  H  N  S  G  V  Y  *  A  E  L  S  C  S  C  *  *  R  Q  P  I  D  W  *  N  L  S  L  H  S  S  L  L  *  *  D  R  C  S  S  N  R  D  T  F  S  W  *  S  H  D  L  H  R  L  R  W  S  S  R  G  L  D  R  V  G  Q  D  E  V  T  R  K  E  T  W  G  N  G  *  T  N  R  *  R  V  F  T  V  F  I  I  I  F  C  F  K  L  F  I  R  *  *  I  R  L  K  Q  S  Y  C  A  R  T  I  F  F  S  K  K  I  R  G  D  Y  L  L  S  M  E  F  I  G  G  C  D  D  P  S  S  S  T  S  R  *  F  H  L  G  D  G  *  R  S  Q  F  D  R  S  C  N  I  *  R  N  S  G  S  F  Q  E  Y  R  *  C  E  A  *  T  R  K  G  E  Y  I  K  A  I  I  H  N  *  M  P  H  M  L  S  *  F  F  L  K  C  H  H  I  Y  C  V  L  F  L  F  L  F  *  K  W  D  Y  V  C  I  N  F  A  *  M  N  *  R  T  E  T  S  W  :  *  K  K  *  K  K  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37862" stop="37411"/>
                    <exon start="36785" stop="35924"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1311</number_coding_nucleotides>
                  <number_encoded_amino_acids>437</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIFRPISFSILYRIFFFLYIISVFFLLNIRICMAVSFLNREVSDLCLGKPALKPIPAEATVSEALTLLKKSGETHVSVWSCDHIRKVVEEEEGGGGYSVCRCIGKICMVDVICFLCTEENLADPSKALQTPVEQILPKGNSIVRHLDPNSSLLEAIDYILEGAQNLVIPIQNSKSTPSRKKLSSKASFLTPTNHNGVEYCWLTQEDIVRFLLNSIGVFSPMPTFSIESLNIINHDMMTVSYHDPAISSLDAIIRAYIEQSSVAVVDEDNRLIGEISPFTLAYCDETVAAAIATLSAGDLMTYIDYGGPPEDLIELVKMRLQEKKLGAMVELIDEEFSLSSSSSSASSCSSDDESGSSKVTVLGRYSSARRSEAITCYPWSSLVAVMIQALAHRANSIWVMDEDHNLIGVVTFKGILEVFRSIANAKRKPERENTSKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37916" e_stop="37411"/>
            <exon e_start="36785" e_stop="35758"/>
            <exon e_start="34799" e_stop="34777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.469" acc_prob="0.732" e_score="0.996"/>
          <exon-only e_score="0.565"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37916" e_stop="37411" e_length="506"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37410" i_stop="36786" i_length="625"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="36785" e_stop="35758" e_length="1028"/>
          </exon>
          <intron i_serial="2" don_prob="0.469" acc_prob="0.732">
            <gDNA_intron_boundary i_start="35757" i_stop="34800" i_length="958"/>
          </intron>
          <exon e_serial="3" e_score="0.565">
            <gDNA_exon_boundary e_start="34799" e_stop="34777" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37916" stop="37411"/>
              <exon start="36785" stop="36673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37916" stop="37659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37916" stop="37724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37915" stop="37411"/>
              <exon start="36785" stop="36674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37907" stop="37428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37907" stop="37685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37905" stop="37411"/>
              <exon start="36785" stop="36464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37895" stop="37411"/>
              <exon start="36785" stop="36393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37895" stop="37483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37894" stop="37411"/>
              <exon start="36785" stop="36570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37894" stop="37411"/>
              <exon start="36785" stop="36757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36771" stop="36044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36771" stop="36179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36472" stop="35891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36376" stop="35785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36250" stop="35758"/>
              <exon start="34799" stop="34777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238001" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAG : CTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGGGGATGCTTGGAAAACACTCT : AGAAAGATGGGCAAAAAAATCTC</gDNA_template>
            <first_frame> H  I  S  N  L  S  P  P  T  K  S  S  V  V  F  S  C  *  R  I  F  R  P  I  S  F  S  I  L  Y  R  I  F  F  F  L  Y  I  I  S  V  F  F  L  L  N  I  R  I  C  M  A  V  S  F  L  N  R  E  V  S  D  L  C  L  G  K  P  A  L  K  P  I  P  A  E  A  T  V  S  E  A  L  T  L  L  K  K  S  G  E  T  H  V  S  V  W  S  C  D  H  I  R  K  V  V  E  E  E  E  G  G  G  G  Y  S  V  C  R  C  I  G  K  I  C  M  V  D  V  I  C  F  L  C  T  E  E  N  L  A  D  P  S  K  A  L  Q  T  P  V  E  Q  I  L  P  K  G  N  S  I  V  R  H  L  D  P  N  S  S :   L  L  E  A  I  D  Y  I  L  E  G  A  Q  N  L  V  I  P  I  Q  N  S  K  S  T  P  S  R  K  K  L  S  S  K  A  S  F  L  T  P  T  N  H  N  G  V  E  Y  C  W  L  T  Q  E  D  I  V  R  F  L  L  N  S  I  G  V  F  S  P  M  P  T  F  S  I  E  S  L  N  I  I  N  H  D  M  M  T  V  S  Y  H  D  P  A  I  S  S  L  D  A  I  I  R  A  Y  I  E  Q  S  S  V  A  V  V  D  E  D  N  R  L  I  G  E  I  S  P  F  T  L  A  Y  C  D  E  T  V  A  A  A  I  A  T  L  S  A  G  D  L  M  T  Y  I  D  Y  G  G  P  P  E  D  L  I  E  L  V  K  M  R  L  Q  E  K  K  L  G  A  M  V  E  L  I  D  E  E  F  S  L  S  S  S  S  S  S  A  S  S  C  S  S  D  D  E  S  G  S  S  K  V  T  V  L  G  R  Y  S  S  A  R  R  S  E  A  I  T  C  Y  P  W  S  S  L  V  A  V  M  I  Q  A  L  A  H  R  A  N  S  I  W  V  M  D  E  D  H  N  L  I  G  V  V  T  F  K  G  I  L  E  V  F  R  S  I  A  N  A  K  R  K  P  E  R  E  N  T  S  K  Q  *  Y  T  I  K  C  H  I  C  *  V  N  F  F  L  N  V  I  I  F  I  V  F  Y  F  Y  F  Y  F  E  N  G  T  M  F  A  *  I  L  L  K  *  T  E  E  L  K  L  L  G  D  A  W  K  T  L   : *  K  D  G  Q  K  N  L </first_frame>
            <second_frame>  T  Y  L  T  Y  H  H  R  L  S  L  P  L  Y  F  P  V  K  E  F  S  G  R  S  L  S  L  F  Y  I  G  F  F  S  F  S  I  L  Y  R  Y  S  F  C  *  I  F  A  F  A  W  Q  *  V  F  *  I  G  R  Y  L  T  C  V  L  V  S  R  R  *  S  L  F  Q  L  K  L  L  Y  R  R  R  *  H  C  *  K  N  P  A  R  L  M  *  A  F  G  A  V  T  I  S  G  R  L  *  K  K  K  K  E  A  E  D  I  L  F  A  A  V  L  G  R  S  V  W  *  M  *  F  A  S  S  V  R  K  R  I  W  R  I  L  L  R  L  F  K  L  L  W  N  R  F  C  L  K  G  I  P  L  S  D  I  *  I  Q  I  L   : A  C  W  K  R  *  I  T  F  L  K  A  L  R  I  W  L  Y  Q  F  K  I  L  R  A  P  L  R  G  K  S  F  R  V  K  R  H  F  *  L  P  Q  I  I  T  E  L  N  T  V  G  *  R  R  K  T  L  S  G  S  F  *  T  P  L  E  S  S  L  P  C  L  L  F  Q  L  N  R  S  T  S  *  I  T  I  *  *  L  L  V  I  M  I  L  Q  F  L  L  W  M  P  *  F  G  R  I  L  S  R  A  Q  L  Q  L  L  M  K  T  T  D  *  L  V  K  S  L  P  S  L  *  P  T  V  M  R  P  L  Q  Q  Q  S  R  H  F  Q  L  V  I  S  *  L  T  S  T  T  V  V  L  Q  R  T  *  S  S  W  S  R  *  G  Y  K  K  R  N  L  G  Q  W  L  N  *  *  M  K  S  F  H  C  L  H  H  H  L  L  L  Q  A  V  H  Q  M  M  N  Q  A  Q  A  K  L  L  C  *  D  D  I  L  Q  Q  E  D  P  R  R  L  L  V  I  H  G  V  H  W  W  L  *  *  S  K  L  *  H  I  A  L  I  P  F  G  *  W  M  K  I  T  I  *  S  E  L  *  H  L  K  E  F  W  K  F  S  G  V  S  L  M  R  S  V  N  Q  K  G  R  I  H  Q  S  N  N  T  Q  L  N  A  T  Y  V  E  L  I  F  S  *  M  S  S  Y  L  L  C  S  I  F  I  F  I  L  K  M  G  L  C  L  H  K  F  C  L  N  E  L  K  N  *  N  F  L  G  M  L  G  K  H  S  :  R  K  M  G  K  K  I   </second_frame>
            <third_frame>   H  I  *  P  I  T  T  D  *  V  F  R  C  I  F  L  L  K  N  F  P  A  D  L  F  L  Y  F  I  S  D  F  F  L  S  L  Y  Y  I  G  I  L  S  V  E  Y  S  H  L  H  G  S  K  F  F  E  S  G  G  I  *  P  V  S  W  *  A  G  V  K  A  Y  S  S  *  S  Y  C  I  G  G  V  D  I  V  E  K  I  R  R  D  S  C  K  R  L  E  L  *  P  Y  Q  E  G  C  R  R  R  R  R  R  R  R  I  F  C  L  P  L  Y  W  E  D  L  Y  G  R  C  D  L  L  P  L  Y  G  R  E  F  G  G  S  F  *  G  S  S  N  S  C  G  T  D  F  A  *  R  E  F  H  C  Q  T  F  R  S  K  F  *  :  L  V  G  S  D  R  L  H  S  *  R  R  S  E  S  G  Y  T  N  S  K  F  *  E  H  P  F  E  E  K  A  F  E  *  S  V  I  F  D  S  H  K  S  *  R  S  *  I  L  L  A  N  A  G  R  H  C  P  V  P  S  E  L  H  W  S  L  L  S  H  A  Y  F  F  N  *  I  A  Q  H  H  K  S  R  Y  D  D  C  *  L  S  *  S  C  N  F  F  F  G  C  H  N  S  G  V  Y  *  A  E  L  S  C  S  C  *  *  R  Q  P  I  D  W  *  N  L  S  L  H  S  S  L  L  *  *  D  R  C  S  S  N  R  D  T  F  S  W  *  S  H  D  L  H  R  L  R  W  S  S  R  G  L  D  R  V  G  Q  D  E  V  T  R  K  E  T  W  G  N  G  *  T  N  R  *  R  V  F  T  V  F  I  I  I  F  C  F  K  L  F  I  R  *  *  I  R  L  K  Q  S  Y  C  A  R  T  I  F  F  S  K  K  I  R  G  D  Y  L  L  S  M  E  F  I  G  G  C  D  D  P  S  S  S  T  S  R  *  F  H  L  G  D  G  *  R  S  Q  F  D  R  S  C  N  I  *  R  N  S  G  S  F  Q  E  Y  R  *  C  E  A  *  T  R  K  G  E  Y  I  K  A  I  I  H  N  *  M  P  H  M  L  S  *  F  F  L  K  C  H  H  I  Y  C  V  L  F  L  F  L  F  *  K  W  D  Y  V  C  I  N  F  A  *  M  N  *  R  T  E  T  S  W  G  C  L  E  N  T  L :   E  R  W  A  K  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37862" stop="37411"/>
                    <exon start="36785" stop="35924"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1311</number_coding_nucleotides>
                  <number_encoded_amino_acids>437</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIFRPISFSILYRIFFFLYIISVFFLLNIRICMAVSFLNREVSDLCLGKPALKPIPAEATVSEALTLLKKSGETHVSVWSCDHIRKVVEEEEGGGGYSVCRCIGKICMVDVICFLCTEENLADPSKALQTPVEQILPKGNSIVRHLDPNSSLLEAIDYILEGAQNLVIPIQNSKSTPSRKKLSSKASFLTPTNHNGVEYCWLTQEDIVRFLLNSIGVFSPMPTFSIESLNIINHDMMTVSYHDPAISSLDAIIRAYIEQSSVAVVDEDNRLIGEISPFTLAYCDETVAAAIATLSAGDLMTYIDYGGPPEDLIELVKMRLQEKKLGAMVELIDEEFSLSSSSSSASSCSSDDESGSSKVTVLGRYSSARRSEAITCYPWSSLVAVMIQALAHRANSIWVMDEDHNLIGVVTFKGILEVFRSIANAKRKPERENTSKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="37916" e_stop="37411"/>
            <exon e_start="36785" e_stop="35862"/>
            <exon e_start="35014" e_stop="34968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.723"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37916" e_stop="37411" e_length="506"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="37410" i_stop="36786" i_length="625"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="36785" e_stop="35862" e_length="924"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35861" i_stop="35015" i_length="847"/>
          </intron>
          <exon e_serial="3" e_score="0.723">
            <gDNA_exon_boundary e_start="35014" e_stop="34968" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37916" stop="37411"/>
              <exon start="36785" stop="36673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37916" stop="37659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37916" stop="37724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37915" stop="37411"/>
              <exon start="36785" stop="36674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37907" stop="37428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37907" stop="37685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37905" stop="37411"/>
              <exon start="36785" stop="36464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37895" stop="37411"/>
              <exon start="36785" stop="36393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37895" stop="37483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37894" stop="37411"/>
              <exon start="36785" stop="36570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37894" stop="37411"/>
              <exon start="36785" stop="36757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36771" stop="36044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36771" stop="36179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36485" stop="35862"/>
              <exon start="35014" stop="34968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36472" stop="35891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATATCTAACCTATCACCACCGACTAAGTCTTCCGTTGTATTTTCCTGTTAAAGAATTTTCCGGCCGATCTCTTTCTCTATTTTATATCGGATTTTTTTCTTTCTCTATATTATATCGGTATTCTTTCTGTTGAATATTCGCATTTGCATGGCAGTAAGTTTTTTGAATCGGGAGGTATCTGACCTGTGTCTTGGTAAGCCGGCGTTAAAGCCTATTCCAGCTGAAGCTACTGTATCGGAGGCGTTGACATTGTTGAAAAAATCCGGCGAGACTCATGTAAGCGTTTGGAGCTGTGACCATATCAGGAAGGTTGTAGAAGAAGAAGAAGGAGGCGGAGGATATTCTGTTTGCCGCTGTATTGGGAAGATCTGTATGGTAGATGTGATTTGCTTCCTCTGTACGGAAGAGAATTTGGCGGATCCTTCTAAGGCTCTTCAAACTCCTGTGGAACAGATTTTGCCTAAAGGGAATTCCATTGTCAGACATTTAGATCCAAATTCTAG : CTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGT : ATTATTTTAAAGTAAAAAAAATGAAAAAAATAAATAAAACTTAAACA</gDNA_template>
            <first_frame> H  I  S  N  L  S  P  P  T  K  S  S  V  V  F  S  C  *  R  I  F  R  P  I  S  F  S  I  L  Y  R  I  F  F  F  L  Y  I  I  S  V  F  F  L  L  N  I  R  I  C  M  A  V  S  F  L  N  R  E  V  S  D  L  C  L  G  K  P  A  L  K  P  I  P  A  E  A  T  V  S  E  A  L  T  L  L  K  K  S  G  E  T  H  V  S  V  W  S  C  D  H  I  R  K  V  V  E  E  E  E  G  G  G  G  Y  S  V  C  R  C  I  G  K  I  C  M  V  D  V  I  C  F  L  C  T  E  E  N  L  A  D  P  S  K  A  L  Q  T  P  V  E  Q  I  L  P  K  G  N  S  I  V  R  H  L  D  P  N  S  S :   L  L  E  A  I  D  Y  I  L  E  G  A  Q  N  L  V  I  P  I  Q  N  S  K  S  T  P  S  R  K  K  L  S  S  K  A  S  F  L  T  P  T  N  H  N  G  V  E  Y  C  W  L  T  Q  E  D  I  V  R  F  L  L  N  S  I  G  V  F  S  P  M  P  T  F  S  I  E  S  L  N  I  I  N  H  D  M  M  T  V  S  Y  H  D  P  A  I  S  S  L  D  A  I  I  R  A  Y  I  E  Q  S  S  V  A  V  V  D  E  D  N  R  L  I  G  E  I  S  P  F  T  L  A  Y  C  D  E  T  V  A  A  A  I  A  T  L  S  A  G  D  L  M  T  Y  I  D  Y  G  G  P  P  E  D  L  I  E  L  V  K  M  R  L  Q  E  K  K  L  G  A  M  V  E  L  I  D  E  E  F  S  L  S  S  S  S  S  S  A  S  S  C  S  S  D  D  E  S  G  S  S  K  V  T  V  L  G  R  Y  S  S  A  R  R  S  E  A  I  T  C  Y  P  W  S  S  L  V  A  V  M  I  Q  A  L  A  H  R  A  N  S  I  W  V  M  D  E  D  H  N  L  I  G  V  V  T  F  K  G  I  L  E  V  F  R  S  I  A  N  A  K  R  K  P  E  R  E  N  T  S  K  Q  *  Y  T  I  K  C  H  I  C  *  V  N  F  F  L  N  V  I  I  F  I  V :   L  F  *  S  K  K  N  E  K  N  K  *  N  L  N  </first_frame>
            <second_frame>  T  Y  L  T  Y  H  H  R  L  S  L  P  L  Y  F  P  V  K  E  F  S  G  R  S  L  S  L  F  Y  I  G  F  F  S  F  S  I  L  Y  R  Y  S  F  C  *  I  F  A  F  A  W  Q  *  V  F  *  I  G  R  Y  L  T  C  V  L  V  S  R  R  *  S  L  F  Q  L  K  L  L  Y  R  R  R  *  H  C  *  K  N  P  A  R  L  M  *  A  F  G  A  V  T  I  S  G  R  L  *  K  K  K  K  E  A  E  D  I  L  F  A  A  V  L  G  R  S  V  W  *  M  *  F  A  S  S  V  R  K  R  I  W  R  I  L  L  R  L  F  K  L  L  W  N  R  F  C  L  K  G  I  P  L  S  D  I  *  I  Q  I  L   : A  C  W  K  R  *  I  T  F  L  K  A  L  R  I  W  L  Y  Q  F  K  I  L  R  A  P  L  R  G  K  S  F  R  V  K  R  H  F  *  L  P  Q  I  I  T  E  L  N  T  V  G  *  R  R  K  T  L  S  G  S  F  *  T  P  L  E  S  S  L  P  C  L  L  F  Q  L  N  R  S  T  S  *  I  T  I  *  *  L  L  V  I  M  I  L  Q  F  L  L  W  M  P  *  F  G  R  I  L  S  R  A  Q  L  Q  L  L  M  K  T  T  D  *  L  V  K  S  L  P  S  L  *  P  T  V  M  R  P  L  Q  Q  Q  S  R  H  F  Q  L  V  I  S  *  L  T  S  T  T  V  V  L  Q  R  T  *  S  S  W  S  R  *  G  Y  K  K  R  N  L  G  Q  W  L  N  *  *  M  K  S  F  H  C  L  H  H  H  L  L  L  Q  A  V  H  Q  M  M  N  Q  A  Q  A  K  L  L  C  *  D  D  I  L  Q  Q  E  D  P  R  R  L  L  V  I  H  G  V  H  W  W  L  *  *  S  K  L  *  H  I  A  L  I  P  F  G  *  W  M  K  I  T  I  *  S  E  L  *  H  L  K  E  F  W  K  F  S  G  V  S  L  M  R  S  V  N  Q  K  G  R  I  H  Q  S  N  N  T  Q  L  N  A  T  Y  V  E  L  I  F  S  *  M  S  S  Y  L  L   : Y  Y  F  K  V  K  K  M  K  K  I  N  K  T  *  T </second_frame>
            <third_frame>   H  I  *  P  I  T  T  D  *  V  F  R  C  I  F  L  L  K  N  F  P  A  D  L  F  L  Y  F  I  S  D  F  F  L  S  L  Y  Y  I  G  I  L  S  V  E  Y  S  H  L  H  G  S  K  F  F  E  S  G  G  I  *  P  V  S  W  *  A  G  V  K  A  Y  S  S  *  S  Y  C  I  G  G  V  D  I  V  E  K  I  R  R  D  S  C  K  R  L  E  L  *  P  Y  Q  E  G  C  R  R  R  R  R  R  R  R  I  F  C  L  P  L  Y  W  E  D  L  Y  G  R  C  D  L  L  P  L  Y  G  R  E  F  G  G  S  F  *  G  S  S  N  S  C  G  T  D  F  A  *  R  E  F  H  C  Q  T  F  R  S  K  F  *  :  L  V  G  S  D  R  L  H  S  *  R  R  S  E  S  G  Y  T  N  S  K  F  *  E  H  P  F  E  E  K  A  F  E  *  S  V  I  F  D  S  H  K  S  *  R  S  *  I  L  L  A  N  A  G  R  H  C  P  V  P  S  E  L  H  W  S  L  L  S  H  A  Y  F  F  N  *  I  A  Q  H  H  K  S  R  Y  D  D  C  *  L  S  *  S  C  N  F  F  F  G  C  H  N  S  G  V  Y  *  A  E  L  S  C  S  C  *  *  R  Q  P  I  D  W  *  N  L  S  L  H  S  S  L  L  *  *  D  R  C  S  S  N  R  D  T  F  S  W  *  S  H  D  L  H  R  L  R  W  S  S  R  G  L  D  R  V  G  Q  D  E  V  T  R  K  E  T  W  G  N  G  *  T  N  R  *  R  V  F  T  V  F  I  I  I  F  C  F  K  L  F  I  R  *  *  I  R  L  K  Q  S  Y  C  A  R  T  I  F  F  S  K  K  I  R  G  D  Y  L  L  S  M  E  F  I  G  G  C  D  D  P  S  S  S  T  S  R  *  F  H  L  G  D  G  *  R  S  Q  F  D  R  S  C  N  I  *  R  N  S  G  S  F  Q  E  Y  R  *  C  E  A  *  T  R  K  G  E  Y  I  K  A  I  I  H  N  *  M  P  H  M  L  S  *  F  F  L  K  C  H  H  I  Y  C  :  I  I  L  K  *  K  K  *  K  K  *  I  K  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37862" stop="37411"/>
                    <exon start="36785" stop="35924"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1311</number_coding_nucleotides>
                  <number_encoded_amino_acids>437</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIFRPISFSILYRIFFFLYIISVFFLLNIRICMAVSFLNREVSDLCLGKPALKPIPAEATVSEALTLLKKSGETHVSVWSCDHIRKVVEEEEGGGGYSVCRCIGKICMVDVICFLCTEENLADPSKALQTPVEQILPKGNSIVRHLDPNSSLLEAIDYILEGAQNLVIPIQNSKSTPSRKKLSSKASFLTPTNHNGVEYCWLTQEDIVRFLLNSIGVFSPMPTFSIESLNIINHDMMTVSYHDPAISSLDAIIRAYIEQSSVAVVDEDNRLIGEISPFTLAYCDETVAAAIATLSAGDLMTYIDYGGPPEDLIELVKMRLQEKKLGAMVELIDEEFSLSSSSSSASSCSSDDESGSSKVTVLGRYSSARRSEAITCYPWSSLVAVMIQALAHRANSIWVMDEDHNLIGVVTFKGILEVFRSIANAKRKPERENTSKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="36793" e_stop="35778"/>
            <exon e_start="35002" e_stop="34977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.808"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="36793" e_stop="35778" e_length="1016"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35777" i_stop="35003" i_length="775"/>
          </intron>
          <exon e_serial="2" e_score="0.808">
            <gDNA_exon_boundary e_start="35002" e_stop="34977" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36793" stop="36060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36771" stop="36044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36771" stop="36179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36472" stop="35891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36417" stop="35778"/>
              <exon start="35002" stop="34977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36376" stop="35785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36318" stop="35778"/>
              <exon start="35002" stop="34977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36274" stop="35778"/>
              <exon start="35002" stop="34977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36082" stop="35778"/>
              <exon start="35002" stop="34977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCAGCTTGTTGGAAGCGATAGATTACATTCTTGAAGGCGCTCAGAATCTGGTTATACCAATTCAAAATTCTAAGAGCACCCCTTCGAGGAAAAAGCTTTCGAGTAAAGCGTCATTTTTGACTCCCACAAATCATAACGGAGTTGAATACTGTTGGCTAACGCAGGAAGACATTGTCCGGTTCCTTCTGAACTCCATTGGAGTCTTCTCTCCCATGCCTACTTTTTCAATTGAATCGCTCAACATCATAAATCACGATATGATGACTGTTAGTTATCATGATCCTGCAATTTCTTCTTTGGATGCCATAATTCGGGCGTATATTGAGCAGAGCTCAGTTGCAGTTGTTGATGAAGACAACCGATTGATTGGTGAAATCTCTCCCTTCACTCTAGCCTACTGTGATGAGACCGTTGCAGCAGCAATCGCGACACTTTCAGCTGGTGATCTCATGACTTACATCGACTACGGTGGTCCTCCAGAGGACTTGATCGAGTTGGTCAAGATGAGGTTACAAGAAAAGAAACTTGGGGCAATGGTTGAACTAATAGATGAAGAGTTTTCACTGTCTTCATCATCATCTTCTGCTTCAAGCTGTTCATCAGATGATGAATCAGGCTCAAGCAAAGTTACTGTGCTAGGACGATATTCTTCAGCAAGAAGATCCGAGGCGATTACTTGTTATCCATGGAGTTCATTGGTGGCTGTGATGATCCAAGCTCTAGCACATCGCGCTAATTCCATTTGGGTGATGGATGAAGATCACAATTTGATCGGAGTTGTAACATTTAAAGGAATTCTGGAAGTTTTCAGGAGTATCGCTAATGCGAAGCGTAAACCAGAAAGGGAGAATACATCAAAGCAATAATACACAATTAAATGCCACATATGTTGAGTTAATTTTTTCTTAAATGTCATCATATTTATTGTGTTCTATTTTTATTTTTATTTTGAAAATGGGACTATGTTTGCATAAATTTTGCTTAAATGAACTGAAGAACTGAAACTTCTTGG : TAAAAAAAATGAAAAAAATAAATAAA</gDNA_template>
            <first_frame> L  F  S  L  L  E  A  I  D  Y  I  L  E  G  A  Q  N  L  V  I  P  I  Q  N  S  K  S  T  P  S  R  K  K  L  S  S  K  A  S  F  L  T  P  T  N  H  N  G  V  E  Y  C  W  L  T  Q  E  D  I  V  R  F  L  L  N  S  I  G  V  F  S  P  M  P  T  F  S  I  E  S  L  N  I  I  N  H  D  M  M  T  V  S  Y  H  D  P  A  I  S  S  L  D  A  I  I  R  A  Y  I  E  Q  S  S  V  A  V  V  D  E  D  N  R  L  I  G  E  I  S  P  F  T  L  A  Y  C  D  E  T  V  A  A  A  I  A  T  L  S  A  G  D  L  M  T  Y  I  D  Y  G  G  P  P  E  D  L  I  E  L  V  K  M  R  L  Q  E  K  K  L  G  A  M  V  E  L  I  D  E  E  F  S  L  S  S  S  S  S  S  A  S  S  C  S  S  D  D  E  S  G  S  S  K  V  T  V  L  G  R  Y  S  S  A  R  R  S  E  A  I  T  C  Y  P  W  S  S  L  V  A  V  M  I  Q  A  L  A  H  R  A  N  S  I  W  V  M  D  E  D  H  N  L  I  G  V  V  T  F  K  G  I  L  E  V  F  R  S  I  A  N  A  K  R  K  P  E  R  E  N  T  S  K  Q  *  Y  T  I  K  C  H  I  C  *  V  N  F  F  L  N  V  I  I  F  I  V  F  Y  F  Y  F  Y  F  E  N  G  T  M  F  A  *  I  L  L  K  *  T  E  E  L  K  L  L  G :   K  K  N  E  K  N  K  *  </first_frame>
            <second_frame>  C  S  A  C  W  K  R  *  I  T  F  L  K  A  L  R  I  W  L  Y  Q  F  K  I  L  R  A  P  L  R  G  K  S  F  R  V  K  R  H  F  *  L  P  Q  I  I  T  E  L  N  T  V  G  *  R  R  K  T  L  S  G  S  F  *  T  P  L  E  S  S  L  P  C  L  L  F  Q  L  N  R  S  T  S  *  I  T  I  *  *  L  L  V  I  M  I  L  Q  F  L  L  W  M  P  *  F  G  R  I  L  S  R  A  Q  L  Q  L  L  M  K  T  T  D  *  L  V  K  S  L  P  S  L  *  P  T  V  M  R  P  L  Q  Q  Q  S  R  H  F  Q  L  V  I  S  *  L  T  S  T  T  V  V  L  Q  R  T  *  S  S  W  S  R  *  G  Y  K  K  R  N  L  G  Q  W  L  N  *  *  M  K  S  F  H  C  L  H  H  H  L  L  L  Q  A  V  H  Q  M  M  N  Q  A  Q  A  K  L  L  C  *  D  D  I  L  Q  Q  E  D  P  R  R  L  L  V  I  H  G  V  H  W  W  L  *  *  S  K  L  *  H  I  A  L  I  P  F  G  *  W  M  K  I  T  I  *  S  E  L  *  H  L  K  E  F  W  K  F  S  G  V  S  L  M  R  S  V  N  Q  K  G  R  I  H  Q  S  N  N  T  Q  L  N  A  T  Y  V  E  L  I  F  S  *  M  S  S  Y  L  L  C  S  I  F  I  F  I  L  K  M  G  L  C  L  H  K  F  C  L  N  E  L  K  N  *  N  F  L   : V  K  K  M  K  K  I  N  K </second_frame>
            <third_frame>   V  Q  L  V  G  S  D  R  L  H  S  *  R  R  S  E  S  G  Y  T  N  S  K  F  *  E  H  P  F  E  E  K  A  F  E  *  S  V  I  F  D  S  H  K  S  *  R  S  *  I  L  L  A  N  A  G  R  H  C  P  V  P  S  E  L  H  W  S  L  L  S  H  A  Y  F  F  N  *  I  A  Q  H  H  K  S  R  Y  D  D  C  *  L  S  *  S  C  N  F  F  F  G  C  H  N  S  G  V  Y  *  A  E  L  S  C  S  C  *  *  R  Q  P  I  D  W  *  N  L  S  L  H  S  S  L  L  *  *  D  R  C  S  S  N  R  D  T  F  S  W  *  S  H  D  L  H  R  L  R  W  S  S  R  G  L  D  R  V  G  Q  D  E  V  T  R  K  E  T  W  G  N  G  *  T  N  R  *  R  V  F  T  V  F  I  I  I  F  C  F  K  L  F  I  R  *  *  I  R  L  K  Q  S  Y  C  A  R  T  I  F  F  S  K  K  I  R  G  D  Y  L  L  S  M  E  F  I  G  G  C  D  D  P  S  S  S  T  S  R  *  F  H  L  G  D  G  *  R  S  Q  F  D  R  S  C  N  I  *  R  N  S  G  S  F  Q  E  Y  R  *  C  E  A  *  T  R  K  G  E  Y  I  K  A  I  I  H  N  *  M  P  H  M  L  S  *  F  F  L  K  C  H  H  I  Y  C  V  L  F  L  F  L  F  *  K  W  D  Y  V  C  I  N  F  A  *  M  N  *  R  T  E  T  S  W  :  *  K  K  *  K  K  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36793" stop="35924"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSLLEAIDYILEGAQNLVIPIQNSKSTPSRKKLSSKASFLTPTNHNGVEYCWLTQEDIVRFLLNSIGVFSPMPTFSIESLNIINHDMMTVSYHDPAISSLDAIIRAYIEQSSVAVVDEDNRLIGEISPFTLAYCDETVAAAIATLSAGDLMTYIDYGGPPEDLIELVKMRLQEKKLGAMVELIDEEFSLSSSSSSASSCSSDDESGSSKVTVLGRYSSARRSEAITCYPWSSLVAVMIQALAHRANSIWVMDEDHNLIGVVTFKGILEVFRSIANAKRKPERENTSKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="35731" PGL_stop="36250"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35731" e_stop="36250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="35731" e_stop="36250" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35731" stop="36250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241502" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35731" stop="36113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240746" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAATTTGATAAAAAGTAGTTCAAACAGAGTGTTTTCCAAGCATCCCCAAGAAGTTTCAGTTCTTCAGTTCATTTAAGCAAAATTTATGCAAACATAGTCCCATTTTCAAAATAAAAATAAAAATAGAACACAATAAATATGATGACATTTAAGAAAAAATTAACTCAACATATGTGGCATTTAATTGTGTATTATTGCTTTGATGTATTCTCCCTTTCTGGTTTACGCTTCGCATTAGCGATACTCCTGAAAACTTCCAGAATTCCTTTAAATGTTACAACTCCGATCAAATTGTGATCTTCATCCATCACCCAAATGGAATTAGCGCGATGTGCTAGAGCTTGGATCATCACAGCCACCAATGAACTCCATGGATAACAAGTAATCGCCTCGGATCTTCTTGCTGAAGAATATCGTCCTAGCACAGTAACTTTGCTTGAGCCTGATTCATCATCTGATGAACAGCTTGAAGCAGAAGATGATGATGAAGACAGTGAAAACTCTTCATCTATTAGTTC</gDNA_template>
            <first_frame> E  N  L  I  K  S  S  S  N  R  V  F  S  K  H  P  Q  E  V  S  V  L  Q  F  I  *  A  K  F  M  Q  T  *  S  H  F  Q  N  K  N  K  N  R  T  Q  *  I  *  *  H  L  R  K  N  *  L  N  I  C  G  I  *  L  C  I  I  A  L  M  Y  S  P  F  L  V  Y  A  S  H  *  R  Y  S  *  K  L  P  E  F  L  *  M  L  Q  L  R  S  N  C  D  L  H  P  S  P  K  W  N  *  R  D  V  L  E  L  G  S  S  Q  P  P  M  N  S  M  D  N  K  *  S  P  R  I  F  L  L  K  N  I  V  L  A  Q  *  L  C  L  S  L  I  H  H  L  M  N  S  L  K  Q  K  M  M  M  K  T  V  K  T  L  H  L  L  V  </first_frame>
            <second_frame>  R  I  *  *  K  V  V  Q  T  E  C  F  P  S  I  P  K  K  F  Q  F  F  S  S  F  K  Q  N  L  C  K  H  S  P  I  F  K  I  K  I  K  I  E  H  N  K  Y  D  D  I  *  E  K  I  N  S  T  Y  V  A  F  N  C  V  L  L  L  *  C  I  L  P  F  W  F  T  L  R  I  S  D  T  P  E  N  F  Q  N  S  F  K  C  Y  N  S  D  Q  I  V  I  F  I  H  H  P  N  G  I  S  A  M  C  *  S  L  D  H  H  S  H  Q  *  T  P  W  I  T  S  N  R  L  G  S  S  C  *  R  I  S  S  *  H  S  N  F  A  *  A  *  F  I  I  *  *  T  A  *  S  R  R  *  *  *  R  Q  *  K  L  F  I  Y  *  F </second_frame>
            <third_frame>   E  F  D  K  K  *  F  K  Q  S  V  F  Q  A  S  P  R  S  F  S  S  S  V  H  L  S  K  I  Y  A  N  I  V  P  F  S  K  *  K  *  K  *  N  T  I  N  M  M  T  F  K  K  K  L  T  Q  H  M  W  H  L  I  V  Y  Y  C  F  D  V  F  S  L  S  G  L  R  F  A  L  A  I  L  L  K  T  S  R  I  P  L  N  V  T  T  P  I  K  L  *  S  S  S  I  T  Q  M  E  L  A  R  C  A  R  A  W  I  I  T  A  T  N  E  L  H  G  *  Q  V  I  A  S  D  L  L  A  E  E  Y  R  P  S  T  V  T  L  L  E  P  D  S  S  S  D  E  Q  L  E  A  E  D  D  D  E  D  S  E  N  S  S  S  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0065H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="50067" PGL_stop="56438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50067" e_stop="50176"/>
            <exon e_start="51974" e_stop="52143"/>
            <exon e_start="53189" e_stop="53305"/>
            <exon e_start="54143" e_stop="54209"/>
            <exon e_start="54541" e_stop="54620"/>
            <exon e_start="54701" e_stop="54781"/>
            <exon e_start="55389" e_stop="55455"/>
            <exon e_start="56048" e_stop="56438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.826" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.709" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50067" e_stop="50176" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50177" i_stop="51973" i_length="1797"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51974" e_stop="52143" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.826" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52144" i_stop="53188" i_length="1045"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53189" e_stop="53305" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.929" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53306" i_stop="54142" i_length="837"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54143" e_stop="54209" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54210" i_stop="54540" i_length="331"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="54541" e_stop="54620" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.709" acc_prob="0.934">
            <gDNA_intron_boundary i_start="54621" i_stop="54700" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="54701" e_stop="54781" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.988">
            <gDNA_intron_boundary i_start="54782" i_stop="55388" i_length="607"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55389" e_stop="55455" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="55456" i_stop="56047" i_length="592"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="56048" e_stop="56438" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50067" stop="50176"/>
              <exon start="51974" stop="52143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50072" stop="50176"/>
              <exon start="51974" stop="52143"/>
              <exon start="53189" stop="53305"/>
              <exon start="54143" stop="54209"/>
              <exon start="54541" stop="54620"/>
              <exon start="54701" stop="54781"/>
              <exon start="55389" stop="55455"/>
              <exon start="56048" stop="56218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50098" stop="50176"/>
              <exon start="51974" stop="52143"/>
              <exon start="53189" stop="53303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54706" stop="54781"/>
              <exon start="55389" stop="55455"/>
              <exon start="56048" stop="56438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688665" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54716" stop="54781"/>
              <exon start="55389" stop="55455"/>
              <exon start="56048" stop="56438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550916" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTATCAAAGATTCAAAACTACTGACATGCCTCGATTTGAAAGTAAAAATGACGATCGGAGAAGATCGTCTCCGTATTCTTACAAAGATCGGAAGTCGCATCATCACGAG : AGCCAGTCTAATGGATCGCAGCACTTTAGAGTGAAGGCTAATTATTCTGGAGATCAATACCGTCACGGTCACCGTCAGCGTGAGGACTACAAGGATAAAAGCACCAGGAGCCACAGAAGAAATGACGACAATGAGGATTACAGCCGTTCCAGGAACCATAAATTTGACAG : GCGCCAAGATCGTGGAGGTAGATATAAGGGTGAAACATGTGGATCCCGTTCTAGGTCAAAGGATCGGTCTCATGAAGAAGCTAGATCAAGATCAAGTTCTCCTTTACCCCCAAAGAG : CAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAG : AAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAG : GTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTG : GTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAG : GTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAATATAAG</gDNA_template>
            <first_frame> G  I  K  D  S  K  L  L  T  C  L  D  L  K  V  K  M  T  I  G  E  D  R  L  R  I  L  T  K  I  G  S  R  I  I  T  R :   A  S  L  M  D  R  S  T  L  E  *  R  L  I  I  L  E  I  N  T  V  T  V  T  V  S  V  R  T  T  R  I  K  A  P  G  A  T  E  E  M  T  T  M  R  I  T  A  V  P  G  T  I  N  L  T   : G  A  K  I  V  E  V  D  I  R  V  K  H  V  D  P  V  L  G  Q  R  I  G  L  M  K  K  L  D  Q  D  Q  V  L  L  Y  P  Q  R   : A  V  G  R  *  N  L  N  R  S  V  Y  *  L  R  Q  G  C  T  *  L  C  R :   N  G  F  *  S  *  W  Y  D  Y  S  W  Y  R  D  R  A  C  C  D  C  *  N  S  N  Q   : G  D  Y  P  S  R  I  I  *  *  R  R  V  *  R  N  F  G  R  H  E  E  G  G  Q  K  F   : G  D  L  I  D  V  V  I  P  R  P  E  P  D  Q  K  M  V  M  V  L  G  R :   Y  F  S  S  T  L  T  L  S  I  A  R  K  Q  R  Q  H  L  V  A  G  N  L  E  G  I  L  L  L  P  F  F  I  L  K  T  N  A  T  R  R  I  M  P  L  N  F  L  N  I  F  H  V  Y  S  L  V  *  F  *  C  L  Q  S  A  I  *  L  R  S  R  P  F  D  N  Y  F  S  S  I  T  I  A  T  L  T  Q  P  Y  G  G  W  F  E  L  L  D  I  V  S  L  L  G  E  V  F  H  V  S  N  Y  C  N  D  Q  I  L  D  I  S  I  *  C  S  I  L  L  K  Y  K </first_frame>
            <second_frame>  V  S  K  I  Q  N  Y  *  H  A  S  I  *  K  *  K  *  R  S  E  K  I  V  S  V  F  L  Q  R  S  E  V  A  S  S  R   : E  P  V  *  W  I  A  A  L  *  S  E  G  *  L  F  W  R  S  I  P  S  R  S  P  S  A  *  G  L  Q  G  *  K  H  Q  E  P  Q  K  K  *  R  Q  *  G  L  Q  P  F  Q  E  P  *  I  *  Q  :  A  P  R  S  W  R  *  I  *  G  *  N  M  W  I  P  F  *  V  K  G  S  V  S  *  R  S  *  I  K  I  K  F  S  F  T  P  K  E  :  Q  W  A  G  E  I  *  T  G  V  C  I  S  S  G  K  A  A  H  S  Y  A   : E  M  A  F  E  A  S  G  M  T  I  P  G  T  E  I  G  P  V  V  T  A  E  I  P  T  K  :  V  I  T  P  Q  E  L  F  D  D  V  E  Y  E  E  I  L  E  D  M  K  K  E  A  K  N  L  :  V  T  *  L  M  L  L  F  L  G  Q  N  L  I  K  K  W  *  W  F  W  E   : G  I  S  R  V  L  *  H  Y  R  L  H  E  S  K  G  S  T  W  W  Q  E  I  W  R  E  Y  C  C  C  H  F  L  S  *  R  Q  M  L  Q  E  G  L  C  L  L  I  F  *  I  S  S  M  F  I  V  L  Y  S  F  S  A  C  N  R  P  F  S  C  G  Q  G  R  S  I  I  I  F  L  P  S  Q  L  Q  R  *  P  S  H  M  V  G  G  L  S  C  L  I  *  S  L  Y  *  E  K  F  F  M  F  Q  T  I  V  M  T  R  F  W  I  Y  L  Y  N  A  Q  Y  Y  *  N  I   </second_frame>
            <third_frame>   Y  Q  R  F  K  T  T  D  M  P  R  F  E  S  K  N  D  D  R  R  R  S  S  P  Y  S  Y  K  D  R  K  S  H  H  H  E  :  S  Q  S  N  G  S  Q  H  F  R  V  K  A  N  Y  S  G  D  Q  Y  R  H  G  H  R  Q  R  E  D  Y  K  D  K  S  T  R  S  H  R  R  N  D  D  N  E  D  Y  S  R  S  R  N  H  K  F  D  R :   R  Q  D  R  G  G  R  Y  K  G  E  T  C  G  S  R  S  R  S  K  D  R  S  H  E  E  A  R  S  R  S  S  S  P  L  P  P  K  S :   S  G  Q  V  K  S  E  Q  E  C  V  L  A  Q  A  R  L  H  I  A  M  Q  :  K  W  L  L  K  L  V  V  *  L  F  L  V  Q  R  *  G  L  L  *  L  L  K  F  Q  P  R :   *  L  P  L  K  N  Y  L  M  T  *  S  M  K  K  F  W  K  T  *  R  R  R  P  K  I  W :   *  L  D  *  C  C  Y  S  S  A  R  T  *  S  K  N  G  D  G  F  G  K  :  V  F  L  E  Y  S  D  T  I  D  C  T  K  A  K  A  A  L  G  G  R  K  F  G  G  N  T  A  V  A  I  F  Y  P  E  D  K  C  Y  K  K  D  Y  A  S  *  F  S  E  Y  L  P  C  L  *  S  C  I  V  L  V  L  A  I  G  H  L  A  A  V  K  A  V  R  *  L  F  F  F  H  H  N  C  N  A  N  P  A  I  W  W  V  V  *  A  A  *  Y  S  L  S  I  R  R  S  F  S  C  F  K  L  L  *  *  P  D  F  G  Y  I  Y  I  M  L  N  I  T  K  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50069" stop="50176"/>
                    <exon start="51974" stop="52143"/>
                    <exon start="53189" stop="53305"/>
                    <exon start="54143" stop="54209"/>
                    <exon start="54541" stop="54567"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YQRFKTTDMPRFESKNDDRRRSSPYSYKDRKSHHHESQSNGSQHFRVKANYSGDQYRHGHRQREDYKDKSTRSHRRNDDNEDYSRSRNHKFDRRQDRGGRYKGETCGSRSRSKDRSHEEARSRSSSPLPPKSSGQVKSEQECVLAQARLHIAMQKWLLKLVV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54742" stop="54781"/>
                    <exon start="55389" stop="55455"/>
                    <exon start="56048" stop="56222"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNFGRHEEGGQKFGDLIDVVIPRPEPDQKMVMVLGRYFSSTLTLSIARKQRQHLVAGNLEGILLLPFFILKTNATRRIMPLNFLNIFHVYSLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53788" e_stop="54209"/>
            <exon e_start="54541" e_stop="54781"/>
            <exon e_start="55389" e_stop="55455"/>
            <exon e_start="56048" e_stop="56438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.983" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="53788" e_stop="54209" e_length="422"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54210" i_stop="54540" i_length="331"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54541" e_stop="54781" e_length="241"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.988">
            <gDNA_intron_boundary i_start="54782" i_stop="55388" i_length="607"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55389" e_stop="55455" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.993">
            <gDNA_intron_boundary i_start="55456" i_stop="56047" i_length="592"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="56048" e_stop="56438" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53788" stop="54209"/>
              <exon start="54541" stop="54667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54636" stop="54781"/>
              <exon start="55389" stop="55455"/>
              <exon start="56048" stop="56437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252948" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54706" stop="54781"/>
              <exon start="55389" stop="55455"/>
              <exon start="56048" stop="56438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688665" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54716" stop="54781"/>
              <exon start="55389" stop="55455"/>
              <exon start="56048" stop="56438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550916" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATCAATTTTGTCAATCTTTGGGAACAGTGTACCAACTGATAATTCTGAATCAAATTTTGTTTATTTGCTCAGTAAAGAGTCTTGTGCTTTTAGAAACAAATGTCTTGCATGCTCACTTCGTCAGTCTCAAAAAGTAGAATTTGTAAACCGCCTTGAGCTTAACAATGTTCAGCAGCCAAGTAAACTTTTGAATGATGATTAACTTCTTCCCATATACTGATTATATCTTCCATATGTTATTTCGATGAAGGGGTGTGTGGTTTCTGGAACCACACTTGTGGTTCTGTATTTAACCTCTCCCTGGTAATTTACTGTGCTCTTTTATAACTTTTTTCCAATCATGTTTAACAGCAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAG : AAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAGGTCTTATGCTTAACCGATAATGACAAGGTAAAATATTGTAGTAATGCTAACGAGTTAGTCATTCTCTGGATGTTTTGAAGGTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTG : GTGACTTGATTGATGTTGTTATTCCTCGGCCAGAACCTGATCAAAAAATGGTGATGGTTTTGGGAAG : GTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAATATAAG</gDNA_template>
            <first_frame> F  Y  Q  F  C  Q  S  L  G  T  V  Y  Q  L  I  I  L  N  Q  I  L  F  I  C  S  V  K  S  L  V  L  L  E  T  N  V  L  H  A  H  F  V  S  L  K  K  *  N  L  *  T  A  L  S  L  T  M  F  S  S  Q  V  N  F  *  M  M  I  N  F  F  P  Y  T  D  Y  I  F  H  M  L  F  R  *  R  G  V  W  F  L  E  P  H  L  W  F  C  I  *  P  L  P  G  N  L  L  C  S  F  I  T  F  F  Q  S  C  L  T  A  V  G  R  *  N  L  N  R  S  V  Y  *  L  R  Q  G  C  T  *  L  C  R :   N  G  F  *  S  *  W  Y  D  Y  S  W  Y  R  D  R  A  C  C  D  C  *  N  S  N  Q  G  L  M  L  N  R  *  *  Q  G  K  I  L  *  *  C  *  R  V  S  H  S  L  D  V  L  K  V  I  T  P  Q  E  L  F  D  D  V  E  Y  E  E  I  L  E  D  M  K  K  E  A  K  N  L  :  V  T  *  L  M  L  L  F  L  G  Q  N  L  I  K  K  W  *  W  F  W  E   : G  I  S  R  V  L  *  H  Y  R  L  H  E  S  K  G  S  T  W  W  Q  E  I  W  R  E  Y  C  C  C  H  F  L  S  *  R  Q  M  L  Q  E  G  L  C  L  L  I  F  *  I  S  S  M  F  I  V  L  Y  S  F  S  A  C  N  R  P  F  S  C  G  Q  G  R  S  I  I  I  F  L  P  S  Q  L  Q  R  *  P  S  H  M  V  G  G  L  S  C  L  I  *  S  L  Y  *  E  K  F  F  M  F  Q  T  I  V  M  T  R  F  W  I  Y  L  Y  N  A  Q  Y  Y  *  N  I   </first_frame>
            <second_frame>  F  I  N  F  V  N  L  W  E  Q  C  T  N  *  *  F  *  I  K  F  C  L  F  A  Q  *  R  V  L  C  F  *  K  Q  M  S  C  M  L  T  S  S  V  S  K  S  R  I  C  K  P  P  *  A  *  Q  C  S  A  A  K  *  T  F  E  *  *  L  T  S  S  H  I  L  I  I  S  S  I  C  Y  F  D  E  G  V  C  G  F  W  N  H  T  C  G  S  V  F  N  L  S  L  V  I  Y  C  A  L  L  *  L  F  S  N  H  V  *  Q  Q  W  A  G  E  I  *  T  G  V  C  I  S  S  G  K  A  A  H  S  Y  A   : E  M  A  F  E  A  S  G  M  T  I  P  G  T  E  I  G  P  V  V  T  A  E  I  P  T  K  V  L  C  L  T  D  N  D  K  V  K  Y  C  S  N  A  N  E  L  V  I  L  W  M  F  *  R  *  L  P  L  K  N  Y  L  M  T  *  S  M  K  K  F  W  K  T  *  R  R  R  P  K  I  W :   *  L  D  *  C  C  Y  S  S  A  R  T  *  S  K  N  G  D  G  F  G  K  :  V  F  L  E  Y  S  D  T  I  D  C  T  K  A  K  A  A  L  G  G  R  K  F  G  G  N  T  A  V  A  I  F  Y  P  E  D  K  C  Y  K  K  D  Y  A  S  *  F  S  E  Y  L  P  C  L  *  S  C  I  V  L  V  L  A  I  G  H  L  A  A  V  K  A  V  R  *  L  F  F  F  H  H  N  C  N  A  N  P  A  I  W  W  V  V  *  A  A  *  Y  S  L  S  I  R  R  S  F  S  C  F  K  L  L  *  *  P  D  F  G  Y  I  Y  I  M  L  N  I  T  K  I  *  </second_frame>
            <third_frame>   L  S  I  L  S  I  F  G  N  S  V  P  T  D  N  S  E  S  N  F  V  Y  L  L  S  K  E  S  C  A  F  R  N  K  C  L  A  C  S  L  R  Q  S  Q  K  V  E  F  V  N  R  L  E  L  N  N  V  Q  Q  P  S  K  L  L  N  D  D  *  L  L  P  I  Y  *  L  Y  L  P  Y  V  I  S  M  K  G  C  V  V  S  G  T  T  L  V  V  L  Y  L  T  S  P  W  *  F  T  V  L  F  Y  N  F  F  P  I  M  F  N  S  S  G  Q  V  K  S  E  Q  E  C  V  L  A  Q  A  R  L  H  I  A  M  Q  :  K  W  L  L  K  L  V  V  *  L  F  L  V  Q  R  *  G  L  L  *  L  L  K  F  Q  P  R  S  Y  A  *  P  I  M  T  R  *  N  I  V  V  M  L  T  S  *  S  F  S  G  C  F  E  G  D  Y  P  S  R  I  I  *  *  R  R  V  *  R  N  F  G  R  H  E  E  G  G  Q  K  F   : G  D  L  I  D  V  V  I  P  R  P  E  P  D  Q  K  M  V  M  V  L  G  R :   Y  F  S  S  T  L  T  L  S  I  A  R  K  Q  R  Q  H  L  V  A  G  N  L  E  G  I  L  L  L  P  F  F  I  L  K  T  N  A  T  R  R  I  M  P  L  N  F  L  N  I  F  H  V  Y  S  L  V  *  F  *  C  L  Q  S  A  I  *  L  R  S  R  P  F  D  N  Y  F  S  S  I  T  I  A  T  L  T  Q  P  Y  G  G  W  F  E  L  L  D  I  V  S  L  L  G  E  V  F  H  V  S  N  Y  C  N  D  Q  I  L  D  I  S  I  *  C  S  I  L  L  K  Y  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54742" stop="54781"/>
                    <exon start="55389" stop="55455"/>
                    <exon start="56048" stop="56222"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNFGRHEEGGQKFGDLIDVVIPRPEPDQKMVMVLGRYFSSTLTLSIARKQRQHLVAGNLEGILLLPFFILKTNATRRIMPLNFLNIFHVYSLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54164" stop="54209"/>
                    <exon start="54541" stop="54698"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGVCISSGKAAHSYAEMAFEASGMTIPGTEIGPVVTAEIPTKVLCLTDNDKVKYCSNANELVILWMF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53790" stop="53993"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSILSIFGNSVPTDNSESNFVYLLSKESCAFRNKCLACSLRQSQKVEFVNRLELNNVQQPSKLLNDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="53787" e_stop="54209"/>
            <exon e_start="54541" e_stop="54932"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53787" e_stop="54209" e_length="423"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54210" i_stop="54540" i_length="331"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="54541" e_stop="54932" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53787" stop="54209"/>
              <exon start="54541" stop="54932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53788" stop="54209"/>
              <exon start="54541" stop="54667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296734" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTATCAATTTTGTCAATCTTTGGGAACAGTGTACCAACTGATAATTCTGAATCAAATTTTGTTTATTTGCTCAGTAAAGAGTCTTGTGCTTTTAGAAACAAATGTCTTGCATGCTCACTTCGTCAGTCTCAAAAAGTAGAATTTGTAAACCGCCTTGAGCTTAACAATGTTCAGCAGCCAAGTAAACTTTTGAATGATGATTAACTTCTTCCCATATACTGATTATATCTTCCATATGTTATTTCGATGAAGGGGTGTGTGGTTTCTGGAACCACACTTGTGGTTCTGTATTTAACCTCTCCCTGGTAATTTACTGTGCTCTTTTATAACTTTTTTCCAATCATGTTTAACAGCAGTGGGCAGGTGAAATCTGAACAGGAGTGTGTATTAGCTCAGGCAAGGCTGCACATAGCTATGCAG : AAATGGCTTTTGAAGCTAGTGGTATGACTATTCCTGGTACAGAGATAGGGCCTGTTGTGACTGCTGAAATTCCAACCAAGGTCTTATGCTTAACCGATAATGACAAGGTAAAATATTGTAGTAATGCTAACGAGTTAGTCATTCTCTGGATGTTTTGAAGGTGATTACCCCTCAAGAATTATTTGATGACGTAGAGTATGAAGAAATTTTGGAAGACATGAAGAAGGAGGCCAAAAATTTGGTAACTGCAGCTTCTCATTCATTAAAATATCTTCTGTTATCTCTTTTTTGTTTTATGATATGTTCTTTTGTTTCCATCTGTTTCTCATGTTCACATAGAAATTGTTTCTATTAAAAAAAGATGATTGAAAATGAGACACTTTCAAATTGAT</gDNA_template>
            <first_frame> V  L  S  I  L  S  I  F  G  N  S  V  P  T  D  N  S  E  S  N  F  V  Y  L  L  S  K  E  S  C  A  F  R  N  K  C  L  A  C  S  L  R  Q  S  Q  K  V  E  F  V  N  R  L  E  L  N  N  V  Q  Q  P  S  K  L  L  N  D  D  *  L  L  P  I  Y  *  L  Y  L  P  Y  V  I  S  M  K  G  C  V  V  S  G  T  T  L  V  V  L  Y  L  T  S  P  W  *  F  T  V  L  F  Y  N  F  F  P  I  M  F  N  S  S  G  Q  V  K  S  E  Q  E  C  V  L  A  Q  A  R  L  H  I  A  M  Q  :  K  W  L  L  K  L  V  V  *  L  F  L  V  Q  R  *  G  L  L  *  L  L  K  F  Q  P  R  S  Y  A  *  P  I  M  T  R  *  N  I  V  V  M  L  T  S  *  S  F  S  G  C  F  E  G  D  Y  P  S  R  I  I  *  *  R  R  V  *  R  N  F  G  R  H  E  E  G  G  Q  K  F  G  N  C  S  F  S  F  I  K  I  S  S  V  I  S  F  L  F  Y  D  M  F  F  C  F  H  L  F  L  M  F  T  *  K  L  F  L  L  K  K  D  D  *  K  *  D  T  F  K  L   </first_frame>
            <second_frame>  F  Y  Q  F  C  Q  S  L  G  T  V  Y  Q  L  I  I  L  N  Q  I  L  F  I  C  S  V  K  S  L  V  L  L  E  T  N  V  L  H  A  H  F  V  S  L  K  K  *  N  L  *  T  A  L  S  L  T  M  F  S  S  Q  V  N  F  *  M  M  I  N  F  F  P  Y  T  D  Y  I  F  H  M  L  F  R  *  R  G  V  W  F  L  E  P  H  L  W  F  C  I  *  P  L  P  G  N  L  L  C  S  F  I  T  F  F  Q  S  C  L  T  A  V  G  R  *  N  L  N  R  S  V  Y  *  L  R  Q  G  C  T  *  L  C  R :   N  G  F  *  S  *  W  Y  D  Y  S  W  Y  R  D  R  A  C  C  D  C  *  N  S  N  Q  G  L  M  L  N  R  *  *  Q  G  K  I  L  *  *  C  *  R  V  S  H  S  L  D  V  L  K  V  I  T  P  Q  E  L  F  D  D  V  E  Y  E  E  I  L  E  D  M  K  K  E  A  K  N  L  V  T  A  A  S  H  S  L  K  Y  L  L  L  S  L  F  C  F  M  I  C  S  F  V  S  I  C  F  S  C  S  H  R  N  C  F  Y  *  K  K  M  I  E  N  E  T  L  S  N  *  </second_frame>
            <third_frame>   F  I  N  F  V  N  L  W  E  Q  C  T  N  *  *  F  *  I  K  F  C  L  F  A  Q  *  R  V  L  C  F  *  K  Q  M  S  C  M  L  T  S  S  V  S  K  S  R  I  C  K  P  P  *  A  *  Q  C  S  A  A  K  *  T  F  E  *  *  L  T  S  S  H  I  L  I  I  S  S  I  C  Y  F  D  E  G  V  C  G  F  W  N  H  T  C  G  S  V  F  N  L  S  L  V  I  Y  C  A  L  L  *  L  F  S  N  H  V  *  Q  Q  W  A  G  E  I  *  T  G  V  C  I  S  S  G  K  A  A  H  S  Y  A   : E  M  A  F  E  A  S  G  M  T  I  P  G  T  E  I  G  P  V  V  T  A  E  I  P  T  K  V  L  C  L  T  D  N  D  K  V  K  Y  C  S  N  A  N  E  L  V  I  L  W  M  F  *  R  *  L  P  L  K  N  Y  L  M  T  *  S  M  K  K  F  W  K  T  *  R  R  R  P  K  I  W  *  L  Q  L  L  I  H  *  N  I  F  C  Y  L  F  F  V  L  *  Y  V  L  L  F  P  S  V  S  H  V  H  I  E  I  V  S  I  K  K  R  *  L  K  M  R  H  F  Q  I  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54671" stop="54895"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSHSLDVLKVITPQELFDDVEYEEILEDMKKEAKNLVTAASHSLKYLLLSLFCFMICSFVSICFSCSHRNCFY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53787" stop="53993"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLSILSIFGNSVPTDNSESNFVYLLSKESCAFRNKCLACSLRQSQKVEFVNRLELNNVQQPSKLLNDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54164" stop="54209"/>
                    <exon start="54541" stop="54698"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGVCISSGKAAHSYAEMAFEASGMTIPGTEIGPVVTAEIPTKVLCLTDNDKVKYCSNANELVILWMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="55564" e_stop="56438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="55564" e_stop="56438" e_length="875"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55564" stop="56438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTAAATAATTTGCTGCCATTGAAAGTCCATGGTCACTTCTTGGTTGACATTGGCAAAATAAAGTGCTCTGTTACTACAAGTTATCGCTTATTTTCCTTTTTACTGTTTGACTCTAGATTTTGAGATCATCTTAGAATGTACTGTTTAGGCAATTTTTGAATGAAGAAGTGATGCATAAGCATTTTTATTTTTTTCTTTCCTCATCTGTCTCTCATATGTATTAATCCTCAATCTGCTGCACAGAGAATTGAAACGACTCATTATTTAATCCTCATAAAAAATGCACACAGAATGTAGCATCACAATCAATTGATCATTTTGCCAGTAATGTACATCTTGATAGTTCACTTCAACCCTGCATGGGTGTTATATATAGCCATATTTCAACAGTCAGGATAATACGCAACAATTATAGTAGTCTTTTTCGATCTTGAATCCCCCCCCTCTCCTTCTTTCAGATGGTTTTGTGTTTCAAACTGCAGGTATTTCTCGAGTACTCTGACACTATCGATTGCACGAAAGCAAAGGCAGCACTTGGTGGCAGGAAATTTGGAGGGAATACTGCTGTTGCCATTTTTTATCCTGAAGACAAATGCTACAAGAAGGATTATGCCTCTTAATTTTCTGAATATCTTCCATGTTTATAGTCTTGTATAGTTTTAGTGCTTGCAATCGGCCATTTAGCTGCGGTCAAGGCCGTTCGATAATTATTTTTCTTCCATCACAATTGCAACGCTAACCCAGCCATATGGTGGGTGGTTTGAGCTGCTTGATATAGTCTCTCTATTAGGAGAAGTTTTTCATGTTTCAAACTATTGTAATGACCAGATTTTGGATATATCTATATAATGCTCAATATTACTAAAATATAAG</gDNA_template>
            <first_frame> V  *  I  I  C  C  H  *  K  S  M  V  T  S  W  L  T  L  A  K  *  S  A  L  L  L  Q  V  I  A  Y  F  P  F  Y  C  L  T  L  D  F  E  I  I  L  E  C  T  V  *  A  I  F  E  *  R  S  D  A  *  A  F  L  F  F  S  F  L  I  C  L  S  Y  V  L  I  L  N  L  L  H  R  E  L  K  R  L  I  I  *  S  S  *  K  M  H  T  E  C  S  I  T  I  N  *  S  F  C  Q  *  C  T  S  *  *  F  T  S  T  L  H  G  C  Y  I  *  P  Y  F  N  S  Q  D  N  T  Q  Q  L  *  *  S  F  S  I  L  N  P  P  P  L  L  L  S  D  G  F  V  F  Q  T  A  G  I  S  R  V  L  *  H  Y  R  L  H  E  S  K  G  S  T  W  W  Q  E  I  W  R  E  Y  C  C  C  H  F  L  S  *  R  Q  M  L  Q  E  G  L  C  L  L  I  F  *  I  S  S  M  F  I  V  L  Y  S  F  S  A  C  N  R  P  F  S  C  G  Q  G  R  S  I  I  I  F  L  P  S  Q  L  Q  R  *  P  S  H  M  V  G  G  L  S  C  L  I  *  S  L  Y  *  E  K  F  F  M  F  Q  T  I  V  M  T  R  F  W  I  Y  L  Y  N  A  Q  Y  Y  *  N  I   </first_frame>
            <second_frame>  F  K  *  F  A  A  I  E  S  P  W  S  L  L  G  *  H  W  Q  N  K  V  L  C  Y  Y  K  L  S  L  I  F  L  F  T  V  *  L  *  I  L  R  S  S  *  N  V  L  F  R  Q  F  L  N  E  E  V  M  H  K  H  F  Y  F  F  L  S  S  S  V  S  H  M  Y  *  S  S  I  C  C  T  E  N  *  N  D  S  L  F  N  P  H  K  K  C  T  Q  N  V  A  S  Q  S  I  D  H  F  A  S  N  V  H  L  D  S  S  L  Q  P  C  M  G  V  I  Y  S  H  I  S  T  V  R  I  I  R  N  N  Y  S  S  L  F  R  S  *  I  P  P  L  S  F  F  Q  M  V  L  C  F  K  L  Q  V  F  L  E  Y  S  D  T  I  D  C  T  K  A  K  A  A  L  G  G  R  K  F  G  G  N  T  A  V  A  I  F  Y  P  E  D  K  C  Y  K  K  D  Y  A  S  *  F  S  E  Y  L  P  C  L  *  S  C  I  V  L  V  L  A  I  G  H  L  A  A  V  K  A  V  R  *  L  F  F  F  H  H  N  C  N  A  N  P  A  I  W  W  V  V  *  A  A  *  Y  S  L  S  I  R  R  S  F  S  C  F  K  L  L  *  *  P  D  F  G  Y  I  Y  I  M  L  N  I  T  K  I  *  </second_frame>
            <third_frame>   L  N  N  L  L  P  L  K  V  H  G  H  F  L  V  D  I  G  K  I  K  C  S  V  T  T  S  Y  R  L  F  S  F  L  L  F  D  S  R  F  *  D  H  L  R  M  Y  C  L  G  N  F  *  M  K  K  *  C  I  S  I  F  I  F  F  F  P  H  L  S  L  I  C  I  N  P  Q  S  A  A  Q  R  I  E  T  T  H  Y  L  I  L  I  K  N  A  H  R  M  *  H  H  N  Q  L  I  I  L  P  V  M  Y  I  L  I  V  H  F  N  P  A  W  V  L  Y  I  A  I  F  Q  Q  S  G  *  Y  A  T  I  I  V  V  F  F  D  L  E  S  P  P  S  P  S  F  R  W  F  C  V  S  N  C  R  Y  F  S  S  T  L  T  L  S  I  A  R  K  Q  R  Q  H  L  V  A  G  N  L  E  G  I  L  L  L  P  F  F  I  L  K  T  N  A  T  R  R  I  M  P  L  N  F  L  N  I  F  H  V  Y  S  L  V  *  F  *  C  L  Q  S  A  I  *  L  R  S  R  P  F  D  N  Y  F  S  S  I  T  I  A  T  L  T  Q  P  Y  G  G  W  F  E  L  L  D  I  V  S  L  L  G  E  V  F  H  V  S  N  Y  C  N  D  Q  I  L  D  I  S  I  *  C  S  I  L  L  K  Y  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55965" stop="56222"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YATIIVVFFDLESPPSPSFRWFCVSNCRYFSSTLTLSIARKQRQHLVAGNLEGILLLPFFILKTNATRRIMPLNFLNIFHVYSLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="50920" e_stop="51246"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50920" e_stop="51246" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50920" stop="51246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATCATACTAAAGGTAAAAGGAAGTACTTAAAAATTATGTCCCCCATGTAGCAATTCCATACTTTTTATCTACTATGCCAATTTAAAGTTGCTAAACATATCCTGGAACCATGTAGAATGGTGTTGGATATATTATGGAACAATGGTTTTAGATACTAAGTCGCTTGGACTATCTACTTTAGGTGCCGCACCCGTGTCGACACAACATGGGTGATTGGGTGTGGGTGTGAGATTCATGTCCGATTTGGCCAACCGATTTTGAGTATTTTGACCAAAATCGATGGGAATTTGGATAGTTTTAATGATTTCTATAATCAATACAAAA</gDNA_template>
            <first_frame> I  I  I  L  K  V  K  G  S  T  *  K  L  C  P  P  C  S  N  S  I  L  F  I  Y  Y  A  N  L  K  L  L  N  I  S  W  N  H  V  E  W  C  W  I  Y  Y  G  T  M  V  L  D  T  K  S  L  G  L  S  T  L  G  A  A  P  V  S  T  Q  H  G  *  L  G  V  G  V  R  F  M  S  D  L  A  N  R  F  *  V  F  *  P  K  S  M  G  I  W  I  V  L  M  I  S  I  I  N  T  K </first_frame>
            <second_frame>  S  S  Y  *  R  *  K  E  V  L  K  N  Y  V  P  H  V  A  I  P  Y  F  L  S  T  M  P  I  *  S  C  *  T  Y  P  G  T  M  *  N  G  V  G  Y  I  M  E  Q  W  F  *  I  L  S  R  L  D  Y  L  L  *  V  P  H  P  C  R  H  N  M  G  D  W  V  W  V  *  D  S  C  P  I  W  P  T  D  F  E  Y  F  D  Q  N  R  W  E  F  G  *  F  *  *  F  L  *  S  I  Q   </second_frame>
            <third_frame>   H  H  T  K  G  K  R  K  Y  L  K  I  M  S  P  M  *  Q  F  H  T  F  Y  L  L  C  Q  F  K  V  A  K  H  I  L  E  P  C  R  M  V  L  D  I  L  W  N  N  G  F  R  Y  *  V  A  W  T  I  Y  F  R  C  R  T  R  V  D  T  T  W  V  I  G  C  G  C  E  I  H  V  R  F  G  Q  P  I  L  S  I  L  T  K  I  D  G  N  L  D  S  F  N  D  F  Y  N  Q  Y  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0065H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="57393" PGL_stop="59291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57393" e_stop="57672"/>
            <exon e_start="57918" e_stop="58158"/>
            <exon e_start="58562" e_stop="58682"/>
            <exon e_start="58835" e_stop="59291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.823" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.866" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57393" e_stop="57672" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="0.823" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57918" e_stop="58158" e_length="241"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58159" i_stop="58561" i_length="403"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58562" e_stop="58682" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.866">
            <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58835" e_stop="59291" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57393" stop="57672"/>
              <exon start="57918" stop="58158"/>
              <exon start="58562" stop="58624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57396" stop="57672"/>
              <exon start="57918" stop="58158"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="58855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57397" stop="57672"/>
              <exon start="57918" stop="58158"/>
              <exon start="58562" stop="58625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57398" stop="57672"/>
              <exon start="57918" stop="58158"/>
              <exon start="58562" stop="58600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57403" stop="57672"/>
              <exon start="57918" stop="58158"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="58905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57419" stop="57672"/>
              <exon start="57918" stop="58080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57429" stop="57672"/>
              <exon start="57918" stop="58158"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="58884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57566" stop="57672"/>
              <exon start="57918" stop="58158"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="58864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57940" stop="58158"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="59138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57940" stop="58158"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="59138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57940" stop="58158"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="59090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57940" stop="58158"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="59090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57941" stop="58158"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="59089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57949" stop="58158"/>
              <exon start="58562" stop="58640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58004" stop="58158"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="59291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59059" stop="59247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATCACCTTGTTTGTGCTTTCTCACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG : GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTT : GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG : GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCAATAAGCCTCCTGCATCTTCCATAAGGGCCTCAGCTTTGTAAATTTTCACATGAGGTTCCAACATGAGAAGATTGTTGAGTTTCCCTTTTTGTTTGTTTTCTTAGTTCCTAAGTGTTGAAAATTAGTAATGAGCAATTAGAACATTCTATATAA</gDNA_template>
            <first_frame> V  Y  H  L  V  C  A  F  S  L  I  Y  F  F  I  D  F  V  *  E  E  R  K  C  W  Q  F  S  R  K  V  W  L  I  H  Q  W  S  C  R  A  Q  P  L  C  N  H  Q  T  R  L  F  P  L  K  R  L  *  R  I  S  *  L  Q  I  P  T  M  G  F  L  L  D  S  W  T  R  H  S  W  P  I  P  N  L  H  P  H  Q  M  L  N  K   : G  C  S  V  G  *  M  T  Y  T  A  F  S  W  E  A  *  I  T  Y  G  H  *  T  S  S  M  V  C  Q  R  V  P  M  R  P  C  L  *  V  K  H  I  V  P  F  V  T  E  V  H  S  Q  L  M  R  F  S  R  D  L  R  V  A  M  A  L  *  S  M  I  I  R  L  V  M  S  L  L  P  L :   V  L  M  K  L  Q  R  C  S  G  E  *  H  L  M  D  L  S  *  S  L  I  M  W  I  I  S  K  E  A  V  S  N  H  L  L  P  S  Q  P  :  G  A  C  T  T  V  K  V  D  *  R  A  L  S  I  Q  V  S  R  *  K  Q  C  Q  E  W  I  V  K  E  P  C  V  E  L  A  S  K  L  M  S  T  P  R  *  I  A  C  Q  E  L  E  V  L  P  T  G  L  I  G  A  S  R  L  R  F  I  W  T  S  L  *  L  T  T  I  *  R  R  K  E  K  S  T  L  S  L  S  S  F  L  L  L  F  S  V  S  L  L  Y  F  N  K  P  P  A  S  S  I  R  A  S  A  L  *  I  F  T  *  G  S  N  M  R  R  L  L  S  F  P  F  C  L  F  S  *  F  L  S  V  E  N  *  *  *  A  I  R  T  F  Y  I  </first_frame>
            <second_frame>  F  I  T  L  F  V  L  S  H  *  F  T  F  S  *  I  L  F  E  K  K  E  N  V  G  N  F  Q  E  K  C  G  *  S  T  N  G  A  A  E  P  S  L  F  A  I  I  K  Q  G  C  F  P  *  R  D  Y  E  E  F  L  S  F  K  Y  Q  Q  W  V  F  Y  W  I  H  G  Q  G  I  L  G  L  F  Q  T  S  I  L  I  K  C  S  T  K  :  V  V  L  W  V  E  *  H  I  L  H  F  L  G  K  L  E  *  L  M  G  T  K  Q  A  V  W  S  V  K  G  Y  Q  *  G  H  A  C  E  *  S  I  S  Y  P  S  *  Q  R  S  I  P  S  S  *  G  S  Q  G  T  *  G  *  L  W  L  C  D  L  *  S  *  G  W  *  C  L  C  C  P   : W  C  *  *  N  C  K  D  V  L  G  N  S  I  *  W  I  C  H  D  L  *  *  C  G  S  Y  Q  R  K  L  S  Q  I  I  C  S  L  P  N  R :   V  H  V  P  Q  *  K  W  I  E  E  L  *  A  S  K  F  Q  D  E  S  N  A  K  S  G  *  *  R  S  H  V  W  S  L  L  Q  S  *  C  L  L  Q  G  E  *  H  A  K  S  W  K  F  C  Q  L  G  *  L  G  P  A  G  L  G  S  F  G  P  H  F  N  *  L  Q  Y  K  E  E  K  K  K  V  L  Y  L  C  L  H  S  C  C  Y  F  L  F  P  Y  C  I  S  I  S  L  L  H  L  P  *  G  P  Q  L  C  K  F  S  H  E  V  P  T  *  E  D  C  *  V  S  L  F  V  C  F  L  S  S  *  V  L  K  I  S  N  E  Q  L  E  H  S  I  * </second_frame>
            <third_frame>   L  S  P  C  L  C  F  L  T  N  L  L  F  H  R  F  C  L  R  R  K  K  M  L  A  I  F  K  K  S  V  V  D  P  P  M  E  L  Q  S  P  A  S  L  Q  S  S  N  K  A  V  S  P  E  E  T  M  K  N  F  L  A  S  N  T  N  N  G  F  S  I  G  F  M  D  K  A  F  L  A  Y  S  K  P  P  S  S  S  N  A  Q  Q  R :   L  F  C  G  L  N  D  I  Y  C  I  F  L  G  S  L  N  N  L  W  A  L  N  K  Q  Y  G  L  S  K  G  T  N  E  A  M  L  V  S  E  A  Y  R  T  L  R  D  R  G  P  F  P  A  H  E  V  L  K  G  L  E  G  S  Y  G  F  V  I  Y  D  H  K  A  G  N  V  F  V  A  L  :  G  A  D  E  T  A  K  M  F  W  G  I  A  S  D  G  S  V  M  I  S  D  N  V  D  H  I  K  G  S  C  L  K  S  F  A  P  F  P  T   : G  C  M  Y  H  S  E  S  G  L  K  S  F  E  H  P  S  F  K  M  K  A  M  P  R  V  D  S  E  G  A  M  C  G  A  C  F  K  V  D  V  Y  S  K  V  N  S  M  P  R  V  G  S  S  A  N  W  A  N  W  G  Q  Q  A  *  V  H  L  D  L  T  L  T  N  Y  N  I  K  K  K  R  K  K  Y  F  I  F  V  F  I  P  V  V  I  F  C  F  P  I  V  F  Q  *  A  S  C  I  F  H  K  G  L  S  F  V  N  F  H  M  R  F  Q  H  E  K  I  V  E  F  P  F  L  F  V  F  L  V  P  K  C  *  K  L  V  M  S  N  *  N  I  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57395" stop="57672"/>
                    <exon start="57918" stop="58158"/>
                    <exon start="58562" stop="58682"/>
                    <exon start="58835" stop="59028"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPCLCFLTNLLFHRFCLRRKKMLAIFKKSVVDPPMELQSPASLQSSNKAVSPEETMKNFLASNTNNGFSIGFMDKAFLAYSKPPSSSNAQQRLFCGLNDIYCIFLGSLNNLWALNKQYGLSKGTNEAMLVSEAYRTLRDRGPFPAHEVLKGLEGSYGFVIYDHKAGNVFVALGADETAKMFWGIASDGSVMISDNVDHIKGSCLKSFAPFPTGCMYHSESGLKSFEHPSFKMKAMPRVDSEGAMCGACFKVDVYSKVNSMPRVGSSANWANWGQQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58095" e_stop="58138"/>
            <exon e_start="58562" e_stop="58682"/>
            <exon e_start="58835" e_stop="59247"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.772" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.866" e_score="0.975"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58095" e_stop="58138" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.772" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58139" i_stop="58561" i_length="423"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="58562" e_stop="58682" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.866">
            <gDNA_intron_boundary i_start="58683" i_stop="58834" i_length="152"/>
          </intron>
          <exon e_serial="3" e_score="0.943">
            <gDNA_exon_boundary e_start="58835" e_stop="59247" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58095" stop="58138"/>
              <exon start="58562" stop="58682"/>
              <exon start="58835" stop="59064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59059" stop="59247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTG : GGTGCTGATGAAACTGCAAAGATGTTCTGGGGAATAGCATCTGATGGATCTGTCATGATCTCTGATAATGTGGATCATATCAAAGGAAGCTGTCTCAAATCATTTGCTCCCTTCCCAACCG : GGTGCATGTACCACAGTGAAAGTGGATTGAAGAGCTTTGAGCATCCAAGTTTCAAGATGAAAGCAATGCCAAGAGTGGATAGTGAAGGAGCCATGTGTGGAGCTTGCTTCAAAGTTGATGTCTACTCCAAGGTGAATAGCATGCCAAGAGTTGGAAGTTCTGCCAACTGGGCTAATTGGGGCCAGCAGGCTTAGGTTCATTTGGACCTCACTTTAACTAACTACAATATAAAGAAGAAAAGAAAAAAGTACTTTATCTTTGTCTTCATTCCTGTTGTTATTTTCTGTTTCCCTATTGTATTTCAATAAGCCTCCTGCATCTTCCATAAGGGCCTCAGCTTTGTAAATTTTCACATGAGGTTCCAACATGAGAAGATTGTTGAGTTTCCCTTTTTGTTTGTTTTCTTAGTTCCT</gDNA_template>
            <first_frame> T  *  G  *  L  W  L  C  D  L  *  S  *  G  W :   V  L  M  K  L  Q  R  C  S  G  E  *  H  L  M  D  L  S  *  S  L  I  M  W  I  I  S  K  E  A  V  S  N  H  L  L  P  S  Q  P  :  G  A  C  T  T  V  K  V  D  *  R  A  L  S  I  Q  V  S  R  *  K  Q  C  Q  E  W  I  V  K  E  P  C  V  E  L  A  S  K  L  M  S  T  P  R  *  I  A  C  Q  E  L  E  V  L  P  T  G  L  I  G  A  S  R  L  R  F  I  W  T  S  L  *  L  T  T  I  *  R  R  K  E  K  S  T  L  S  L  S  S  F  L  L  L  F  S  V  S  L  L  Y  F  N  K  P  P  A  S  S  I  R  A  S  A  L  *  I  F  T  *  G  S  N  M  R  R  L  L  S  F  P  F  C  L  F  S  *  F   </first_frame>
            <second_frame>  L  E  G  S  Y  G  F  V  I  Y  D  H  K  A   : G  C  *  *  N  C  K  D  V  L  G  N  S  I  *  W  I  C  H  D  L  *  *  C  G  S  Y  Q  R  K  L  S  Q  I  I  C  S  L  P  N  R :   V  H  V  P  Q  *  K  W  I  E  E  L  *  A  S  K  F  Q  D  E  S  N  A  K  S  G  *  *  R  S  H  V  W  S  L  L  Q  S  *  C  L  L  Q  G  E  *  H  A  K  S  W  K  F  C  Q  L  G  *  L  G  P  A  G  L  G  S  F  G  P  H  F  N  *  L  Q  Y  K  E  E  K  K  K  V  L  Y  L  C  L  H  S  C  C  Y  F  L  F  P  Y  C  I  S  I  S  L  L  H  L  P  *  G  P  Q  L  C  K  F  S  H  E  V  P  T  *  E  D  C  *  V  S  L  F  V  C  F  L  S  S  </second_frame>
            <third_frame>   L  R  V  A  M  A  L  *  S  M  I  I  R  L  :  G  A  D  E  T  A  K  M  F  W  G  I  A  S  D  G  S  V  M  I  S  D  N  V  D  H  I  K  G  S  C  L  K  S  F  A  P  F  P  T   : G  C  M  Y  H  S  E  S  G  L  K  S  F  E  H  P  S  F  K  M  K  A  M  P  R  V  D  S  E  G  A  M  C  G  A  C  F  K  V  D  V  Y  S  K  V  N  S  M  P  R  V  G  S  S  A  N  W  A  N  W  G  Q  Q  A  *  V  H  L  D  L  T  L  T  N  Y  N  I  K  K  K  R  K  K  Y  F  I  F  V  F  I  P  V  V  I  F  C  F  P  I  V  F  Q  *  A  S  C  I  F  H  K  G  L  S  F  V  N  F  H  M  R  F  Q  H  E  K  I  V  E  F  P  F  L  F  V  F  L  V  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58121" stop="58138"/>
                    <exon start="58562" stop="58682"/>
                    <exon start="58835" stop="59028"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMIIRLGADETAKMFWGIASDGSVMISDNVDHIKGSCLKSFAPFPTGCMYHSESGLKSFEHPSFKMKAMPRVDSEGAMCGACFKVDVYSKVNSMPRVGSSANWANWGQQA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="57419" e_stop="57672"/>
            <exon e_start="57918" e_stop="58537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.823" acc_prob="0.996" e_score="0.992"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="57419" e_stop="57672" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.823" acc_prob="0.996">
            <gDNA_intron_boundary i_start="57673" i_stop="57917" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="57918" e_stop="58537" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57419" stop="57672"/>
              <exon start="57918" stop="58080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57569" stop="57672"/>
              <exon start="57918" stop="58537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTAATTTACTTTTTCATAGATTTTGTTTGAGAAGAAAGAAAATGTTGGCAATTTTCAAGAAAAGTGTGGTTGATCCACCAATGGAGCTGCAGAGCCCAGCCTCTTTGCAATCATCAAACAAGGCTGTTTCCCCTGAAGAGACTATGAAGAATTTCTTAGCTTCAAATACCAACAATGGGTTTTCTATTGGATTCATGGACAAGGCATTCTTGGCCTATTCCAAACCTCCATCCTCATCAAATGCTCAACAAAG : GTTGTTCTGTGGGTTGAATGACATATACTGCATTTTCTTGGGAAGCTTGAATAACTTATGGGCACTAAACAAGCAGTATGGTCTGTCAAAGGGTACCAATGAGGCCATGCTTGTGAGTGAAGCATATCGTACCCTTCGTGACAGAGGTCCATTCCCAGCTCATGAGGTTCTCAAGGGACTTGAGGGTAGCTATGGCTTTGTGATCTATGATCATAAGGCTGGTAATGTCTTTGTTGCCCTTGTGAGTTCTTTTCTAGTTCTAAAGTTTATCCCCATCAATATGCAATTTTTAATAATGGTAGTTTTCAAGCCTGTTAGTGCTGAGCACCTCAACTATTCATTAGAGTACATGTTGCCTCTTACCAACACAGCTATGTCATAACTGCCTACTAAGGCTTAGGCAGATAGAAAGAAATGATTTTAGCAGATTCTATCTCTTTCTTGCAGTTACAATCACCAAAAGAAAGTGCATTGTCTCTATAAATGTATATAAACAACATTTTCTTACTCTAATTGGAGATGGAATGATGGTGATATCAATCTTGAAAGGGAACATATACAATAGATCATTTATTATATTCTATTAAGACATAATTTCCTTTTTTTCTCTTTCATTGAAT</gDNA_template>
            <first_frame> T  N  L  L  F  H  R  F  C  L  R  R  K  K  M  L  A  I  F  K  K  S  V  V  D  P  P  M  E  L  Q  S  P  A  S  L  Q  S  S  N  K  A  V  S  P  E  E  T  M  K  N  F  L  A  S  N  T  N  N  G  F  S  I  G  F  M  D  K  A  F  L  A  Y  S  K  P  P  S  S  S  N  A  Q  Q  R :   L  F  C  G  L  N  D  I  Y  C  I  F  L  G  S  L  N  N  L  W  A  L  N  K  Q  Y  G  L  S  K  G  T  N  E  A  M  L  V  S  E  A  Y  R  T  L  R  D  R  G  P  F  P  A  H  E  V  L  K  G  L  E  G  S  Y  G  F  V  I  Y  D  H  K  A  G  N  V  F  V  A  L  V  S  S  F  L  V  L  K  F  I  P  I  N  M  Q  F  L  I  M  V  V  F  K  P  V  S  A  E  H  L  N  Y  S  L  E  Y  M  L  P  L  T  N  T  A  M  S  *  L  P  T  K  A  *  A  D  R  K  K  *  F  *  Q  I  L  S  L  S  C  S  Y  N  H  Q  K  K  V  H  C  L  Y  K  C  I  *  T  T  F  S  Y  S  N  W  R  W  N  D  G  D  I  N  L  E  R  E  H  I  Q  *  I  I  Y  Y  I  L  L  R  H  N  F  L  F  F  S  F  I  E  </first_frame>
            <second_frame>  L  I  Y  F  F  I  D  F  V  *  E  E  R  K  C  W  Q  F  S  R  K  V  W  L  I  H  Q  W  S  C  R  A  Q  P  L  C  N  H  Q  T  R  L  F  P  L  K  R  L  *  R  I  S  *  L  Q  I  P  T  M  G  F  L  L  D  S  W  T  R  H  S  W  P  I  P  N  L  H  P  H  Q  M  L  N  K   : G  C  S  V  G  *  M  T  Y  T  A  F  S  W  E  A  *  I  T  Y  G  H  *  T  S  S  M  V  C  Q  R  V  P  M  R  P  C  L  *  V  K  H  I  V  P  F  V  T  E  V  H  S  Q  L  M  R  F  S  R  D  L  R  V  A  M  A  L  *  S  M  I  I  R  L  V  M  S  L  L  P  L  *  V  L  F  *  F  *  S  L  S  P  S  I  C  N  F  *  *  W  *  F  S  S  L  L  V  L  S  T  S  T  I  H  *  S  T  C  C  L  L  P  T  Q  L  C  H  N  C  L  L  R  L  R  Q  I  E  R  N  D  F  S  R  F  Y  L  F  L  A  V  T  I  T  K  R  K  C  I  V  S  I  N  V  Y  K  Q  H  F  L  T  L  I  G  D  G  M  M  V  I  S  I  L  K  G  N  I  Y  N  R  S  F  I  I  F  Y  *  D  I  I  S  F  F  S  L  S  L  N </second_frame>
            <third_frame>   *  F  T  F  S  *  I  L  F  E  K  K  E  N  V  G  N  F  Q  E  K  C  G  *  S  T  N  G  A  A  E  P  S  L  F  A  I  I  K  Q  G  C  F  P  *  R  D  Y  E  E  F  L  S  F  K  Y  Q  Q  W  V  F  Y  W  I  H  G  Q  G  I  L  G  L  F  Q  T  S  I  L  I  K  C  S  T  K  :  V  V  L  W  V  E  *  H  I  L  H  F  L  G  K  L  E  *  L  M  G  T  K  Q  A  V  W  S  V  K  G  Y  Q  *  G  H  A  C  E  *  S  I  S  Y  P  S  *  Q  R  S  I  P  S  S  *  G  S  Q  G  T  *  G  *  L  W  L  C  D  L  *  S  *  G  W  *  C  L  C  C  P  C  E  F  F  S  S  S  K  V  Y  P  H  Q  Y  A  I  F  N  N  G  S  F  Q  A  C  *  C  *  A  P  Q  L  F  I  R  V  H  V  A  S  Y  Q  H  S  Y  V  I  T  A  Y  *  G  L  G  R  *  K  E  M  I  L  A  D  S  I  S  F  L  Q  L  Q  S  P  K  E  S  A  L  S  L  *  M  Y  I  N  N  I  F  L  L  *  L  E  M  E  *  W  *  Y  Q  S  *  K  G  T  Y  T  I  D  H  L  L  Y  S  I  K  T  *  F  P  F  F  L  F  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57419" stop="57672"/>
                    <exon start="57918" stop="58299"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNLLFHRFCLRRKKMLAIFKKSVVDPPMELQSPASLQSSNKAVSPEETMKNFLASNTNNGFSIGFMDKAFLAYSKPPSSSNAQQRLFCGLNDIYCIFLGSLNNLWALNKQYGLSKGTNEAMLVSEAYRTLRDRGPFPAHEVLKGLEGSYGFVIYDHKAGNVFVALVSSFLVLKFIPINMQFLIMVVFKPVSAEHLNYSLEYMLPLTNTAMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="70294" PGL_stop="65843"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70294" e_stop="70211"/>
            <exon e_start="69484" e_stop="69248"/>
            <exon e_start="69090" e_stop="68919"/>
            <exon e_start="68812" e_stop="68331"/>
            <exon e_start="66630" e_stop="66454"/>
            <exon e_start="66171" e_stop="65843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.815" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.555" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70294" e_stop="70211" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.989">
            <gDNA_intron_boundary i_start="70210" i_stop="69485" i_length="726"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69484" e_stop="69248" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="69247" i_stop="69091" i_length="157"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="69090" e_stop="68919" e_length="172"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.815">
            <gDNA_intron_boundary i_start="68918" i_stop="68813" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68812" e_stop="68331" e_length="482"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68330" i_stop="66631" i_length="1700"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66630" e_stop="66454" e_length="177"/>
          </exon>
          <intron i_serial="5" don_prob="0.555" acc_prob="0.988">
            <gDNA_intron_boundary i_start="66453" i_stop="66172" i_length="282"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="66171" e_stop="65843" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70294" stop="70211"/>
              <exon start="69484" stop="69248"/>
              <exon start="69090" stop="68919"/>
              <exon start="68812" stop="68500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68669" stop="68331"/>
              <exon start="66630" stop="66536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68631" stop="68331"/>
              <exon start="66630" stop="66454"/>
              <exon start="66171" stop="65860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66593" stop="66454"/>
              <exon start="66171" stop="65843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245637" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGCTTTGAACAGTGTCATTGCTGTACTGGATGCAGATTTCCATTCCCTCCCTTCAACTCAGCATAGACAGCAGTATGGACCG : AGTCTAGACAGGATAAAATGCAGGCTTCTAGAAGGTACAAATGCTCAAGAAGTCCGGGCAATGGTGCTTGACATGCAAGCAAGATTGTTGCTAGATATGCTTGGCAAGGGAATCGAATCAGCTTTAACAAACCCATCAGCATTGGTTCCGGAGCCATGGCAAGCTTCTAGCGAGACACTGTTTGGTATTGATCCTGAGGCGATGGCTGTTGAACCATCACTTGTGCCAAGTATCCAG : GCATATGTAGATGCGATACTGGATCTGGCGTCTCATTTCATCACGCGCTTACGGCGCTATGCAAGTTTCTGCCGTACATTGGCTAGTCATGCTGTTACTGCAGGTACAGGTGGGAGTAGGAGTATGGTGACTAGTCCTACTCAAAGTGCTTCATCTCCTGCCACTTCCCAGG : GTGCTCAGGGTGGTACTGCAAGTTCTGCTGGGAGCACTCAGATGCAAGCTTGGGTACAAGGAGCTATAGCAAAAATTAGCAGTACAGCCGACAGTGTTCCTAGTTCAGCCCCAAACCCCATCACTGGTCCTTCTACATTTATGCCGATAAGTATCAACACTGGCACTTTCCCTGGAACTCCGGCTGTTAGGCTTATAGGGGACTGCCATTTTCTTCATCGGCTATGTCAACTTCTGCATTTCTGTTTTTTCTTCCGTGGAACACAATTACCGCGTTTTATGGGGGCTGCTCAAAGGAATGCTGATTCTTCAATGCAAAAACCTCAGTCCGGTATTCCAGGCAAAACAGAAGATTCCAACTCTGGTGCAAAACCAACGCTAGGCGGTCAGGTTGGAACAGGAGCAAAGGGGTCTGAAGAAGGTCCATCTAAACGGTCTAGGATTGGTTCTGGAAATGCTGGTCAAGGATACACATATGAGGAG : GTGAAGGTCCTTTTTCTTATTCTGATGGATCTTTGTCGCCGGACTGCTGGTTTGGTACATCCGCTGCCAGTTTCTCAGGTTGGGAGCAACAACATTCAGGTCCGCCTTCATTATATTGATGGGAACTATACTGTATTGCCGGAAGTAGTTGAAGCTTCCCTGGGACCTCACATGCAG : AATATGCCTAGGCCTAGAGGTGCAGATGCTGCTGGGCTGCTATTGCGTGAGTTAGAACTCCATCCACCTGCTGAGGAATGGCACAGGAGAAATATGTTTGGTGGACCTTGGTCTGATCCAGAAGATGTGGATGACAATTCTAAGCTTAGCCCATCAAGGGATTTGACACAGTACAGCTCATTAGAAAACTGTGATGTATATTATGGAGCTCATGGTTTGTGGCCTAGGAAACGCAGGATGTCTGAAAGAGATGCTGCTTTTGGGCTGAATACTTCAGTGGGGCTGGGTGCATATCTTGGTATAATGGGATCTCGACGAGATGTTGTGAC</gDNA_template>
            <first_frame> V  A  L  N  S  V  I  A  V  L  D  A  D  F  H  S  L  P  S  T  Q  H  R  Q  Q  Y  G  P  :  S  L  D  R  I  K  C  R  L  L  E  G  T  N  A  Q  E  V  R  A  M  V  L  D  M  Q  A  R  L  L  L  D  M  L  G  K  G  I  E  S  A  L  T  N  P  S  A  L  V  P  E  P  W  Q  A  S  S  E  T  L  F  G  I  D  P  E  A  M  A  V  E  P  S  L  V  P  S  I  Q  :  A  Y  V  D  A  I  L  D  L  A  S  H  F  I  T  R  L  R  R  Y  A  S  F  C  R  T  L  A  S  H  A  V  T  A  G  T  G  G  S  R  S  M  V  T  S  P  T  Q  S  A  S  S  P  A  T  S  Q   : G  A  Q  G  G  T  A  S  S  A  G  S  T  Q  M  Q  A  W  V  Q  G  A  I  A  K  I  S  S  T  A  D  S  V  P  S  S  A  P  N  P  I  T  G  P  S  T  F  M  P  I  S  I  N  T  G  T  F  P  G  T  P  A  V  R  L  I  G  D  C  H  F  L  H  R  L  C  Q  L  L  H  F  C  F  F  F  R  G  T  Q  L  P  R  F  M  G  A  A  Q  R  N  A  D  S  S  M  Q  K  P  Q  S  G  I  P  G  K  T  E  D  S  N  S  G  A  K  P  T  L  G  G  Q  V  G  T  G  A  K  G  S  E  E  G  P  S  K  R  S  R  I  G  S  G  N  A  G  Q  G  Y  T  Y  E  E  :  V  K  V  L  F  L  I  L  M  D  L  C  R  R  T  A  G  L  V  H  P  L  P  V  S  Q  V  G  S  N  N  I  Q  V  R  L  H  Y  I  D  G  N  Y  T  V  L  P  E  V  V  E  A  S  L  G  P  H  M  Q  :  N  M  P  R  P  R  G  A  D  A  A  G  L  L  L  R  E  L  E  L  H  P  P  A  E  E  W  H  R  R  N  M  F  G  G  P  W  S  D  P  E  D  V  D  D  N  S  K  L  S  P  S  R  D  L  T  Q  Y  S  S  L  E  N  C  D  V  Y  Y  G  A  H  G  L  W  P  R  K  R  R  M  S  E  R  D  A  A  F  G  L  N  T  S  V  G  L  G  A  Y  L  G  I  M  G  S  R  R  D  V  V   </first_frame>
            <second_frame>  L  L  *  T  V  S  L  L  Y  W  M  Q  I  S  I  P  S  L  Q  L  S  I  D  S  S  M  D  R :   V  *  T  G  *  N  A  G  F  *  K  V  Q  M  L  K  K  S  G  Q  W  C  L  T  C  K  Q  D  C  C  *  I  C  L  A  R  E  S  N  Q  L  *  Q  T  H  Q  H  W  F  R  S  H  G  K  L  L  A  R  H  C  L  V  L  I  L  R  R  W  L  L  N  H  H  L  C  Q  V  S  R :   H  M  *  M  R  Y  W  I  W  R  L  I  S  S  R  A  Y  G  A  M  Q  V  S  A  V  H  W  L  V  M  L  L  L  Q  V  Q  V  G  V  G  V  W  *  L  V  L  L  K  V  L  H  L  L  P  L  P  R  :  V  L  R  V  V  L  Q  V  L  L  G  A  L  R  C  K  L  G  Y  K  E  L  *  Q  K  L  A  V  Q  P  T  V  F  L  V  Q  P  Q  T  P  S  L  V  L  L  H  L  C  R  *  V  S  T  L  A  L  S  L  E  L  R  L  L  G  L  *  G  T  A  I  F  F  I  G  Y  V  N  F  C  I  S  V  F  S  S  V  E  H  N  Y  R  V  L  W  G  L  L  K  G  M  L  I  L  Q  C  K  N  L  S  P  V  F  Q  A  K  Q  K  I  P  T  L  V  Q  N  Q  R  *  A  V  R  L  E  Q  E  Q  R  G  L  K  K  V  H  L  N  G  L  G  L  V  L  E  M  L  V  K  D  T  H  M  R  R :   *  R  S  F  F  L  F  *  W  I  F  V  A  G  L  L  V  W  Y  I  R  C  Q  F  L  R  L  G  A  T  T  F  R  S  A  F  I  I  L  M  G  T  I  L  Y  C  R  K  *  L  K  L  P  W  D  L  T  C  R :   I  C  L  G  L  E  V  Q  M  L  L  G  C  Y  C  V  S  *  N  S  I  H  L  L  R  N  G  T  G  E  I  C  L  V  D  L  G  L  I  Q  K  M  W  M  T  I  L  S  L  A  H  Q  G  I  *  H  S  T  A  H  *  K  T  V  M  Y  I  M  E  L  M  V  C  G  L  G  N  A  G  C  L  K  E  M  L  L  L  G  *  I  L  Q  W  G  W  V  H  I  L  V  *  W  D  L  D  E  M  L  *  </second_frame>
            <third_frame>   C  F  E  Q  C  H  C  C  T  G  C  R  F  P  F  P  P  F  N  S  A  *  T  A  V  W  T   : E  S  R  Q  D  K  M  Q  A  S  R  R  Y  K  C  S  R  S  P  G  N  G  A  *  H  A  S  K  I  V  A  R  Y  A  W  Q  G  N  R  I  S  F  N  K  P  I  S  I  G  S  G  A  M  A  S  F  *  R  D  T  V  W  Y  *  S  *  G  D  G  C  *  T  I  T  C  A  K  Y  P   : G  I  C  R  C  D  T  G  S  G  V  S  F  H  H  A  L  T  A  L  C  K  F  L  P  Y  I  G  *  S  C  C  Y  C  R  Y  R  W  E  *  E  Y  G  D  *  S  Y  S  K  C  F  I  S  C  H  F  P  G :   C  S  G  W  Y  C  K  F  C  W  E  H  S  D  A  S  L  G  T  R  S  Y  S  K  N  *  Q  Y  S  R  Q  C  S  *  F  S  P  K  P  H  H  W  S  F  Y  I  Y  A  D  K  Y  Q  H  W  H  F  P  W  N  S  G  C  *  A  Y  R  G  L  P  F  S  S  S  A  M  S  T  S  A  F  L  F  F  L  P  W  N  T  I  T  A  F  Y  G  G  C  S  K  E  C  *  F  F  N  A  K  T  S  V  R  Y  S  R  Q  N  R  R  F  Q  L  W  C  K  T  N  A  R  R  S  G  W  N  R  S  K  G  V  *  R  R  S  I  *  T  V  *  D  W  F  W  K  C  W  S  R  I  H  I  *  G   : G  E  G  P  F  S  Y  S  D  G  S  L  S  P  D  C  W  F  G  T  S  A  A  S  F  S  G  W  E  Q  Q  H  S  G  P  P  S  L  Y  *  W  E  L  Y  C  I  A  G  S  S  *  S  F  P  G  T  S  H  A   : E  Y  A  *  A  *  R  C  R  C  C  W  A  A  I  A  *  V  R  T  P  S  T  C  *  G  M  A  Q  E  K  Y  V  W  W  T  L  V  *  S  R  R  C  G  *  Q  F  *  A  *  P  I  K  G  F  D  T  V  Q  L  I  R  K  L  *  C  I  L  W  S  S  W  F  V  A  *  E  T  Q  D  V  *  K  R  C  C  F  W  A  E  Y  F  S  G  A  G  C  I  S  W  Y  N  G  I  S  T  R  C  C  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70294" stop="70211"/>
                    <exon start="69484" stop="69248"/>
                    <exon start="69090" stop="68919"/>
                    <exon start="68812" stop="68331"/>
                    <exon start="66630" stop="66454"/>
                    <exon start="66171" stop="65845"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1479</number_coding_nucleotides>
                  <number_encoded_amino_acids>493</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VALNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALTNPSALVPEPWQASSETLFGIDPEAMAVEPSLVPSIQAYVDAILDLASHFITRLRRYASFCRTLASHAVTAGTGGSRSMVTSPTQSASSPATSQGAQGGTASSAGSTQMQAWVQGAIAKISSTADSVPSSAPNPITGPSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLHFCFFFRGTQLPRFMGAAQRNADSSMQKPQSGIPGKTEDSNSGAKPTLGGQVGTGAKGSEEGPSKRSRIGSGNAGQGYTYEEVKVLFLILMDLCRRTAGLVHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVDDNSKLSPSRDLTQYSSLENCDVYYGAHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="71299" PGL_stop="70740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71299" e_stop="70740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71299" e_stop="70740" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71299" stop="70740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAGGTTAACTATGGATATGATGCCGGAAACAGACCAATTTTATATCACCCTTCAATGTGAATTAGCAAAAGCGATGTCTCCTTCCATACTATGGATACCAAAAATTCATTATCTGGATTTGAATGAGTCTATGACAGGATTTATGATTGTTTGCTATTTGATGTGTTAATAGGAATCCTGACTAAAGAGTTCTGAAATAAAAAATTTCATTCCTGTTCTACTTGTGAGGTAATCAGTAATCAGTCTCTGTACTGATCACCAGGTTCAAGTAATGTGCCCCCCACCTTTTGCAATATATGGATTCTAAAGAATTGAAATGTCATATCTTCAATTTAGAGTTGCATACATGTTCCTTTTATAGCACTAATTTTTTTGCTTAATCGTTGGTCATTCTGCTGCAAGATCTTTACTTGGGTTTCATGGACTGCAAAATAAAATTTTTATAGCAGTTTTAGTTTGTTGAAATTCTTGTGTAGTTTGGAGGGTATTACCTGTCCTTGCATGCTTGCTTTCCTTGTTTTTCGTCTCTTCTGCTTTGATTCTGAATAATTGAAGACA</gDNA_template>
            <first_frame> N  R  L  T  M  D  M  M  P  E  T  D  Q  F  Y  I  T  L  Q  C  E  L  A  K  A  M  S  P  S  I  L  W  I  P  K  I  H  Y  L  D  L  N  E  S  M  T  G  F  M  I  V  C  Y  L  M  C  *  *  E  S  *  L  K  S  S  E  I  K  N  F  I  P  V  L  L  V  R  *  S  V  I  S  L  C  T  D  H  Q  V  Q  V  M  C  P  P  P  F  A  I  Y  G  F  *  R  I  E  M  S  Y  L  Q  F  R  V  A  Y  M  F  L  L  *  H  *  F  F  C  L  I  V  G  H  S  A  A  R  S  L  L  G  F  H  G  L  Q  N  K  I  F  I  A  V  L  V  C  *  N  S  C  V  V  W  R  V  L  P  V  L  A  C  L  L  S  L  F  F  V  S  S  A  L  I  L  N  N  *  R   </first_frame>
            <second_frame>  I  G  *  L  W  I  *  C  R  K  Q  T  N  F  I  S  P  F  N  V  N  *  Q  K  R  C  L  L  P  Y  Y  G  Y  Q  K  F  I  I  W  I  *  M  S  L  *  Q  D  L  *  L  F  A  I  *  C  V  N  R  N  P  D  *  R  V  L  K  *  K  I  S  F  L  F  Y  L  *  G  N  Q  *  S  V  S  V  L  I  T  R  F  K  *  C  A  P  H  L  L  Q  Y  M  D  S  K  E  L  K  C  H  I  F  N  L  E  L  H  T  C  S  F  Y  S  T  N  F  F  A  *  S  L  V  I  L  L  Q  D  L  Y  L  G  F  M  D  C  K  I  K  F  L  *  Q  F  *  F  V  E  I  L  V  *  F  G  G  Y  Y  L  S  L  H  A  C  F  P  C  F  S  S  L  L  L  *  F  *  I  I  E  D  </second_frame>
            <third_frame>   *  V  N  Y  G  Y  D  A  G  N  R  P  I  L  Y  H  P  S  M  *  I  S  K  S  D  V  S  F  H  T  M  D  T  K  N  S  L  S  G  F  E  *  V  Y  D  R  I  Y  D  C  L  L  F  D  V  L  I  G  I  L  T  K  E  F  *  N  K  K  F  H  S  C  S  T  C  E  V  I  S  N  Q  S  L  Y  *  S  P  G  S  S  N  V  P  P  T  F  C  N  I  W  I  L  K  N  *  N  V  I  S  S  I  *  S  C  I  H  V  P  F  I  A  L  I  F  L  L  N  R  W  S  F  C  C  K  I  F  T  W  V  S  W  T  A  K  *  N  F  Y  S  S  F  S  L  L  K  F  L  C  S  L  E  G  I  T  C  P  C  M  L  A  F  L  V  F  R  L  F  C  F  D  S  E  *  L  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0065H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="73016" PGL_stop="72865"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73016" e_stop="72865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73016" e_stop="72865" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73016" stop="72865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCTCTGTCTTCTCATCAGGGTCTGTTCAGCTCCACTGGTCTCAATGGCCACCTAATCAGAATGGTGCACCATCAAAGTGGTTTTGCACAAGCAAAGGGCTATTGGGAGCGGGGCCTAGTGGCATCATGGCTGCTGATGCTATCATAACAG</gDNA_template>
            <first_frame> M  L  C  L  L  I  R  V  C  S  A  P  L  V  S  M  A  T  *  S  E  W  C  T  I  K  V  V  L  H  K  Q  R  A  I  G  S  G  A  *  W  H  H  G  C  *  C  Y  H  N   </first_frame>
            <second_frame>  C  S  V  F  S  S  G  S  V  Q  L  H  W  S  Q  W  P  P  N  Q  N  G  A  P  S  K  W  F  C  T  S  K  G  L  L  G  A  G  P  S  G  I  M  A  A  D  A  I  I  T  </second_frame>
            <third_frame>   A  L  S  S  H  Q  G  L  F  S  S  T  G  L  N  G  H  L  I  R  M  V  H  H  Q  S  G  F  A  Q  A  K  G  Y  W  E  R  G  L  V  A  S  W  L  L  M  L  S  *  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0065H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="81462" PGL_stop="75094"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81462" e_stop="80837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="81462" e_stop="80837" e_length="626"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81462" stop="80837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAAATGAACAATCAACAACCACCTGTTGCTAAAGATACTGAAGTGGAGAAGGAGGAAGAGTCTTCTTCTGTGATTACCAATTCTCTAGAACCTTCTACTAATAAGGTTCACGAGAAACCGGATATCATTATTGAAGACGACGACGACGATCATCCTGCTGCAATTGTGGCTATGGTGACGGAGAAGGAGGTCTCTTCTGTTGACGATGATCCCATGGATGAGGATACTGTCAATCCTGCTGTCGTCTTTTGTATTAGGCTCAAACAACCTAGGTCAAATTTGCTTCATAAAATGAGTGTTCCTGAACTTTGCCGCAATTTCAGGTGATTTTTTAAAATTTTGTTTATGCTACATCTCAATTCTGGCTACATGACTTAGAAGATGATATCAATATTTTTTTTCCTTATAACTAAAGTAAGGATACGATCGAATTTAAAAAAAGCAGAAAAAGTGAGATTAGTCTGTTAGAGGTTTACTTAGTTATGCTGGAAGTGGAGAACTTGTTGGAACTTCGCAGTTTAACTGTTGAGGCGGTGGAAGTCACTGAATTGAGTTCTAAAGTTGCTGTACGTTGAGCTCACTGCCTCAAGTGATAGCTAGTTGCTGATCGAAGTGTTGACTTGT</gDNA_template>
            <first_frame> F  K  *  T  I  N  N  H  L  L  L  K  I  L  K  W  R  R  R  K  S  L  L  L  *  L  P  I  L  *  N  L  L  L  I  R  F  T  R  N  R  I  S  L  L  K  T  T  T  T  I  I  L  L  Q  L  W  L  W  *  R  R  R  R  S  L  L  L  T  M  I  P  W  M  R  I  L  S  I  L  L  S  S  F  V  L  G  S  N  N  L  G  Q  I  C  F  I  K  *  V  F  L  N  F  A  A  I  S  G  D  F  L  K  F  C  L  C  Y  I  S  I  L  A  T  *  L  R  R  *  Y  Q  Y  F  F  S  L  *  L  K  *  G  Y  D  R  I  *  K  K  Q  K  K  *  D  *  S  V  R  G  L  L  S  Y  A  G  S  G  E  L  V  G  T  S  Q  F  N  C  *  G  G  G  S  H  *  I  E  F  *  S  C  C  T  L  S  S  L  P  Q  V  I  A  S  C  *  S  K  C  *  L   </first_frame>
            <second_frame>  S  N  E  Q  S  T  T  T  C  C  *  R  Y  *  S  G  E  G  G  R  V  F  F  C  D  Y  Q  F  S  R  T  F  Y  *  *  G  S  R  E  T  G  Y  H  Y  *  R  R  R  R  R  S  S  C  C  N  C  G  Y  G  D  G  E  G  G  L  F  C  *  R  *  S  H  G  *  G  Y  C  Q  S  C  C  R  L  L  Y  *  A  Q  T  T  *  V  K  F  A  S  *  N  E  C  S  *  T  L  P  Q  F  Q  V  I  F  *  N  F  V  Y  A  T  S  Q  F  W  L  H  D  L  E  D  D  I  N  I  F  F  P  Y  N  *  S  K  D  T  I  E  F  K  K  S  R  K  S  E  I  S  L  L  E  V  Y  L  V  M  L  E  V  E  N  L  L  E  L  R  S  L  T  V  E  A  V  E  V  T  E  L  S  S  K  V  A  V  R  *  A  H  C  L  K  *  *  L  V  A  D  R  S  V  D  L  </second_frame>
            <third_frame>   Q  M  N  N  Q  Q  P  P  V  A  K  D  T  E  V  E  K  E  E  E  S  S  S  V  I  T  N  S  L  E  P  S  T  N  K  V  H  E  K  P  D  I  I  I  E  D  D  D  D  D  H  P  A  A  I  V  A  M  V  T  E  K  E  V  S  S  V  D  D  D  P  M  D  E  D  T  V  N  P  A  V  V  F  C  I  R  L  K  Q  P  R  S  N  L  L  H  K  M  S  V  P  E  L  C  R  N  F  R  *  F  F  K  I  L  F  M  L  H  L  N  S  G  Y  M  T  *  K  M  I  S  I  F  F  F  L  I  T  K  V  R  I  R  S  N  L  K  K  A  E  K  V  R  L  V  C  *  R  F  T  *  L  C  W  K  W  R  T  C  W  N  F  A  V  *  L  L  R  R  W  K  S  L  N  *  V  L  K  L  L  Y  V  E  L  T  A  S  S  D  S  *  L  L  I  E  V  L  T  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81460" stop="81134"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMNNQQPPVAKDTEVEKEEESSSVITNSLEPSTNKVHEKPDIIIEDDDDDHPAAIVAMVTEKEVSSVDDDPMDEDTVNPAVVFCIRLKQPRSNLLHKMSVPELCRNFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81430" e_stop="81138"/>
            <exon e_start="77240" e_stop="77172"/>
            <exon e_start="76998" e_stop="76910"/>
            <exon e_start="75888" e_stop="75776"/>
            <exon e_start="75329" e_stop="75228"/>
            <exon e_start="75149" e_stop="75094"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.667" acc_prob="0.791" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.852" acc_prob="0.000" e_score="0.990"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81430" e_stop="81138" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.994">
            <gDNA_intron_boundary i_start="81137" i_stop="77241" i_length="3897"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77240" e_stop="77172" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.979">
            <gDNA_intron_boundary i_start="77171" i_stop="76999" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76998" e_stop="76910" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.667" acc_prob="0.791">
            <gDNA_intron_boundary i_start="76909" i_stop="75889" i_length="1021"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75888" e_stop="75776" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75775" i_stop="75330" i_length="446"/>
          </intron>
          <exon e_serial="5" e_score="0.990">
            <gDNA_exon_boundary e_start="75329" e_stop="75228" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.852" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75227" i_stop="75150" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="75149" e_stop="75094" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81430" stop="81138"/>
              <exon start="77240" stop="77172"/>
              <exon start="76998" stop="76910"/>
              <exon start="75888" stop="75776"/>
              <exon start="75329" stop="75228"/>
              <exon start="75149" stop="75094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703989" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGATACTGAAGTGGAGAAGGAGGAAGAGTCTTCTTCTGTGATTACCAATTCTCTAGAACCTTCTACTAATAAGGTTCACGAGAAACCGGATATCATTATTGAAGACGACGACGACGATCATCCTGCTGCAATTGTGGCTATGGTGACGGAGAAGGAGGTCTCTTCTGTTGACGATGATCCCATGGATGAGGATACTGTCAATCCTGCTGTCGTCTTTTGTATTAGGCTCAAACAACCTAGGTCAAATTTGCTTCATAAAATGAGTGTTCCTGAACTTTGCCGCAATTTCAG : TGCTGTTGCTTGGTGTGGAAAGCTAAATGCAATAGCTTGTGCGTCTGAAACATGTGCAAGGATTCCAAG : TTCAAATGCAAATCCACCTTTCTGGATCCCTATACATATCGTCATCCCAGAGCGACCAACTGAGTGCACTGTGTTCAATGTTATAGCAG : ACTCCCCTCGTGATTCCGTCCAATTCATTGAATGGTCTCCAACTTCGTGTCCACGTGCACTACTCATAGCTAACTTTCATGGGAGAATAACAATCTGGACTCAGCCTTCACAA : GGTTCAGCTAATCTGGTACGAGATGCTAGTTGTTGGCAGCGAGATTACGAATGGCATCAAGATATTGCAGTTGTTACAAAGTGGTTATCAGGAGTTTCTCCG : TATAGGTGGCTTTCAACAAGAACGGGCGGTTCCGCTAAGTCAACATTTGAGGAGAA</gDNA_template>
            <first_frame> K  D  T  E  V  E  K  E  E  E  S  S  S  V  I  T  N  S  L  E  P  S  T  N  K  V  H  E  K  P  D  I  I  I  E  D  D  D  D  D  H  P  A  A  I  V  A  M  V  T  E  K  E  V  S  S  V  D  D  D  P  M  D  E  D  T  V  N  P  A  V  V  F  C  I  R  L  K  Q  P  R  S  N  L  L  H  K  M  S  V  P  E  L  C  R  N  F  S :   A  V  A  W  C  G  K  L  N  A  I  A  C  A  S  E  T  C  A  R  I  P  S :   S  N  A  N  P  P  F  W  I  P  I  H  I  V  I  P  E  R  P  T  E  C  T  V  F  N  V  I  A   : D  S  P  R  D  S  V  Q  F  I  E  W  S  P  T  S  C  P  R  A  L  L  I  A  N  F  H  G  R  I  T  I  W  T  Q  P  S  Q  :  G  S  A  N  L  V  R  D  A  S  C  W  Q  R  D  Y  E  W  H  Q  D  I  A  V  V  T  K  W  L  S  G  V  S  P  :  Y  R  W  L  S  T  R  T  G  G  S  A  K  S  T  F  E  E   </first_frame>
            <second_frame>  K  I  L  K  W  R  R  R  K  S  L  L  L  *  L  P  I  L  *  N  L  L  L  I  R  F  T  R  N  R  I  S  L  L  K  T  T  T  T  I  I  L  L  Q  L  W  L  W  *  R  R  R  R  S  L  L  L  T  M  I  P  W  M  R  I  L  S  I  L  L  S  S  F  V  L  G  S  N  N  L  G  Q  I  C  F  I  K  *  V  F  L  N  F  A  A  I  S   : V  L  L  L  G  V  E  S  *  M  Q  *  L  V  R  L  K  H  V  Q  G  F  Q   : V  Q  M  Q  I  H  L  S  G  S  L  Y  I  S  S  S  Q  S  D  Q  L  S  A  L  C  S  M  L  *  Q  :  T  P  L  V  I  P  S  N  S  L  N  G  L  Q  L  R  V  H  V  H  Y  S  *  L  T  F  M  G  E  *  Q  S  G  L  S  L  H  K :   V  Q  L  I  W  Y  E  M  L  V  V  G  S  E  I  T  N  G  I  K  I  L  Q  L  L  Q  S  G  Y  Q  E  F  L  R :   I  G  G  F  Q  Q  E  R  A  V  P  L  S  Q  H  L  R  R  </second_frame>
            <third_frame>   R  Y  *  S  G  E  G  G  R  V  F  F  C  D  Y  Q  F  S  R  T  F  Y  *  *  G  S  R  E  T  G  Y  H  Y  *  R  R  R  R  R  S  S  C  C  N  C  G  Y  G  D  G  E  G  G  L  F  C  *  R  *  S  H  G  *  G  Y  C  Q  S  C  C  R  L  L  Y  *  A  Q  T  T  *  V  K  F  A  S  *  N  E  C  S  *  T  L  P  Q  F  Q  :  C  C  C  L  V  W  K  A  K  C  N  S  L  C  V  *  N  M  C  K  D  S  K  :  F  K  C  K  S  T  F  L  D  P  Y  T  Y  R  H  P  R  A  T  N  *  V  H  C  V  Q  C  Y  S  R :   L  P  S  *  F  R  P  I  H  *  M  V  S  N  F  V  S  T  C  T  T  H  S  *  L  S  W  E  N  N  N  L  D  S  A  F  T   : R  F  S  *  S  G  T  R  C  *  L  L  A  A  R  L  R  M  A  S  R  Y  C  S  C  Y  K  V  V  I  R  S  F  S   : V  *  V  A  F  N  K  N  G  R  F  R  *  V  N  I  *  G  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81430" stop="81138"/>
                    <exon start="77240" stop="77172"/>
                    <exon start="76998" stop="76910"/>
                    <exon start="75888" stop="75776"/>
                    <exon start="75329" stop="75228"/>
                    <exon start="75149" stop="75096"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDTEVEKEEESSSVITNSLEPSTNKVHEKPDIIIEDDDDDHPAAIVAMVTEKEVSSVDDDPMDEDTVNPAVVFCIRLKQPRSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECTVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGSANLVRDASCWQRDYEWHQDIAVVTKWLSGVSPYRWLSTRTGGSAKSTFEE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="90019" PGL_stop="91207"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90019" e_stop="90168"/>
            <exon e_start="90353" e_stop="90465"/>
            <exon e_start="90724" e_stop="90934"/>
            <exon e_start="91016" e_stop="91207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.804" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90019" e_stop="90168" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.804" acc_prob="0.960">
            <gDNA_intron_boundary i_start="90169" i_stop="90352" i_length="184"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90353" e_stop="90465" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.938" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90466" i_stop="90723" i_length="258"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90724" e_stop="90934" e_length="211"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90935" i_stop="91015" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="91016" e_stop="91207" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90019" stop="90168"/>
              <exon start="90353" stop="90465"/>
              <exon start="90724" stop="90934"/>
              <exon start="91016" stop="91021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90020" stop="90168"/>
              <exon start="90353" stop="90465"/>
              <exon start="90724" stop="90934"/>
              <exon start="91016" stop="91207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90020" stop="90168"/>
              <exon start="90353" stop="90465"/>
              <exon start="90724" stop="90934"/>
              <exon start="91016" stop="91134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394852" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGTATTGGTGGTGAAGGCTAACATTTCATTTACTCATCAAAAGGCACTATCAATTGATTTAGACACGCTAATTGACATGAGTTGTTGCTTCTTTGGCGACCGGAAAAAGGGTCATGATCTCGTTCACCATGATACAAGAGATGCAGGAG : GTGACTCCATTGCAAGCACAAAGAATTTTTCATTTAATGAATTAAGATTAGCAACCAACAACTTCCATCAAATTAATAAAATAGGGCGAGGCGGTTTTGGCACAGTATACAAG : GGAACTCTAAAACAAGGAAAAGATGTTGCTGTGAAGACACTAGCAGCAGAATCAAGGCAGGGTTTGCGGGAGTTTTTGACAGAAATTGAGACAATATCAAATGTCAAACATCCAAATCTAGTTGAGATAATTGGATGCTGTGCTGATGGAAATAACCGGATTTTGGTCTATGAATATTTAGAAAATAGAAGCCTTGATCGGGCACTGTTTG : GTTCAAGGACTAGTATTAAGTTAGAATGGGAAAAAAGGACTACTATTTGCTTGGGTACTGCTCGAGGTCTTGCATATCTACATGAAGAACTAGTGCCACATATAGTGCACAGGGATATAAAAGCTAGTAATATTCTGCTTGACAAGGATTATACACCAAAAATTGGAGATTTTGGGCTTGCTAAACTTTTCC</gDNA_template>
            <first_frame> V  Y  W  W  *  R  L  T  F  H  L  L  I  K  R  H  Y  Q  L  I  *  T  R  *  L  T  *  V  V  A  S  L  A  T  G  K  R  V  M  I  S  F  T  M  I  Q  E  M  Q  E  :  V  T  P  L  Q  A  Q  R  I  F  H  L  M  N  *  D  *  Q  P  T  T  S  I  K  L  I  K  *  G  E  A  V  L  A  Q  Y  T  R :   E  L  *  N  K  E  K  M  L  L  *  R  H  *  Q  Q  N  Q  G  R  V  C  G  S  F  *  Q  K  L  R  Q  Y  Q  M  S  N  I  Q  I  *  L  R  *  L  D  A  V  L  M  E  I  T  G  F  W  S  M  N  I  *  K  I  E  A  L  I  G  H  C  L  :  V  Q  G  L  V  L  S  *  N  G  K  K  G  L  L  F  A  W  V  L  L  E  V  L  H  I  Y  M  K  N  *  C  H  I  *  C  T  G  I  *  K  L  V  I  F  C  L  T  R  I  I  H  Q  K  L  E  I  L  G  L  L  N  F  S </first_frame>
            <second_frame>  C  I  G  G  E  G  *  H  F  I  Y  S  S  K  G  T  I  N  *  F  R  H  A  N  *  H  E  L  L  L  L  W  R  P  E  K  G  S  *  S  R  S  P  *  Y  K  R  C  R  R :   *  L  H  C  K  H  K  E  F  F  I  *  *  I  K  I  S  N  Q  Q  L  P  S  N  *  *  N  R  A  R  R  F  W  H  S  I  Q   : G  N  S  K  T  R  K  R  C  C  C  E  D  T  S  S  R  I  K  A  G  F  A  G  V  F  D  R  N  *  D  N  I  K  C  Q  T  S  K  S  S  *  D  N  W  M  L  C  *  W  K  *  P  D  F  G  L  *  I  F  R  K  *  K  P  *  S  G  T  V  W :   F  K  D  *  Y  *  V  R  M  G  K  K  D  Y  Y  L  L  G  Y  C  S  R  S  C  I  S  T  *  R  T  S  A  T  Y  S  A  Q  G  Y  K  S  *  *  Y  S  A  *  Q  G  L  Y  T  K  N  W  R  F  W  A  C  *  T  F   </second_frame>
            <third_frame>   V  L  V  V  K  A  N  I  S  F  T  H  Q  K  A  L  S  I  D  L  D  T  L  I  D  M  S  C  C  F  F  G  D  R  K  K  G  H  D  L  V  H  H  D  T  R  D  A  G   : G  D  S  I  A  S  T  K  N  F  S  F  N  E  L  R  L  A  T  N  N  F  H  Q  I  N  K  I  G  R  G  G  F  G  T  V  Y  K  :  G  T  L  K  Q  G  K  D  V  A  V  K  T  L  A  A  E  S  R  Q  G  L  R  E  F  L  T  E  I  E  T  I  S  N  V  K  H  P  N  L  V  E  I  I  G  C  C  A  D  G  N  N  R  I  L  V  Y  E  Y  L  E  N  R  S  L  D  R  A  L  F   : G  S  R  T  S  I  K  L  E  W  E  K  R  T  T  I  C  L  G  T  A  R  G  L  A  Y  L  H  E  E  L  V  P  H  I  V  H  R  D  I  K  A  S  N  I  L  L  D  K  D  Y  T  P  K  I  G  D  F  G  L  A  K  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90021" stop="90168"/>
                    <exon start="90353" stop="90465"/>
                    <exon start="90724" stop="90934"/>
                    <exon start="91016" stop="91206"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLVVKANISFTHQKALSIDLDTLIDMSCCFFGDRKKGHDLVHHDTRDAGGDSIASTKNFSFNELRLATNNFHQINKIGRGGFGTVYKGTLKQGKDVAVKTLAAESRQGLREFLTEIETISNVKHPNLVEIIGCCADGNNRILVYEYLENRSLDRALFGSRTSIKLEWEKRTTICLGTARGLAYLHEELVPHIVHRDIKASNILLDKDYTPKIGDFGLAKLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="93190" PGL_stop="94103"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93190" e_stop="93992"/>
            <exon e_start="94060" e_stop="94103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.999"/>
          <exon-only e_score="0.591"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="93190" e_stop="93992" e_length="803"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93993" i_stop="94059" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="0.591">
            <gDNA_exon_boundary e_start="94060" e_stop="94103" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93190" stop="93903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93337" stop="93862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93337" stop="93749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93338" stop="93943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93338" stop="93787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93338" stop="93775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93338" stop="93635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93380" stop="93992"/>
              <exon start="94060" stop="94103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93451" stop="93961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394851" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGAAGAACTAGATGAATTCCCGGAGAGAGAAGTCGTCAGGTACATCAAGACGGCTCTGTTTTGCACACAAGCAAATGCAAACAGAAGACCAATGATGAGCCAGGTTATTGAGATGCTTTCAAGAGATATCCAGCTAAATGAGAAAGAACTTACACCACCTGGTTTCTTCGAAGATTCTGAAGGAAGCGTGCAATCAAGATTGAAGATATCTAGAGGTAATACTAGTCAACAAAGTTCTGTACACATCACAATTACTCAGGTGACCCCTAGATAGTCATCCTTGGTGACCGCCTGATCCTGCACTTGAATCATTCTTCCTGCGACATTGTTTTGCAGCTTAAGATGACGTTTGCTTGAGATTTTCTAGGAATTGAGTTTGCAAACTTGTATATTATGGATTTTTAACAAAAAAGGATAGCTAACTTTTTCAAATCTAGTTTTTTCAAATTTGTTGAAATATTTCTGAAATCTTCATAGAAAAGTTTGAACCTTTCTGCAAGTGTAGTTCAGACACATGAAGCAAAATTGAGTTTGCAAATTCAAAATTTTTTGAAAAATTTCAAACAAACGCCATCTAAGTTCACAGAAGATTGAAATTGCAGGATTAATGATATCGGAAGGCGTTGTCAAAGTTCCTAGACAAAATTCCAGCAATTTATGTGTATTATTTTTGTATGACAAACATTTTTTTGGATCCTGTTTTTTACCTTATTATTTTTATTCTGACAGGTATTATATTAAACCGATAACATTATATAGTTTCAAGTAAAATATTCTTTCAAAATAATATTTTATCAAGAT : CAAAAATATAATTGCAAAATCAATAATCTAAATAAATATTAATA</gDNA_template>
            <first_frame> D  E  E  L  D  E  F  P  E  R  E  V  V  R  Y  I  K  T  A  L  F  C  T  Q  A  N  A  N  R  R  P  M  M  S  Q  V  I  E  M  L  S  R  D  I  Q  L  N  E  K  E  L  T  P  P  G  F  F  E  D  S  E  G  S  V  Q  S  R  L  K  I  S  R  G  N  T  S  Q  Q  S  S  V  H  I  T  I  T  Q  V  T  P  R  *  S  S  L  V  T  A  *  S  C  T  *  I  I  L  P  A  T  L  F  C  S  L  R  *  R  L  L  E  I  F  *  E  L  S  L  Q  T  C  I  L  W  I  F  N  K  K  G  *  L  T  F  S  N  L  V  F  S  N  L  L  K  Y  F  *  N  L  H  R  K  V  *  T  F  L  Q  V  *  F  R  H  M  K  Q  N  *  V  C  K  F  K  I  F  *  K  I  S  N  K  R  H  L  S  S  Q  K  I  E  I  A  G  L  M  I  S  E  G  V  V  K  V  P  R  Q  N  S  S  N  L  C  V  L  F  L  Y  D  K  H  F  F  G  S  C  F  L  P  Y  Y  F  Y  S  D  R  Y  Y  I  K  P  I  T  L  Y  S  F  K  *  N  I  L  S  K  *  Y  F  I  K  I :   K  N  I  I  A  K  S  I  I  *  I  N  I  N  </first_frame>
            <second_frame>  M  K  N  *  M  N  S  R  R  E  K  S  S  G  T  S  R  R  L  C  F  A  H  K  Q  M  Q  T  E  D  Q  *  *  A  R  L  L  R  C  F  Q  E  I  S  S  *  M  R  K  N  L  H  H  L  V  S  S  K  I  L  K  E  A  C  N  Q  D  *  R  Y  L  E  V  I  L  V  N  K  V  L  Y  T  S  Q  L  L  R  *  P  L  D  S  H  P  W  *  P  P  D  P  A  L  E  S  F  F  L  R  H  C  F  A  A  *  D  D  V  C  L  R  F  S  R  N  *  V  C  K  L  V  Y  Y  G  F  L  T  K  K  D  S  *  L  F  Q  I  *  F  F  Q  I  C  *  N  I  S  E  I  F  I  E  K  F  E  P  F  C  K  C  S  S  D  T  *  S  K  I  E  F  A  N  S  K  F  F  E  K  F  Q  T  N  A  I  *  V  H  R  R  L  K  L  Q  D  *  *  Y  R  K  A  L  S  K  F  L  D  K  I  P  A  I  Y  V  Y  Y  F  C  M  T  N  I  F  L  D  P  V  F  Y  L  I  I  F  I  L  T  G  I  I  L  N  R  *  H  Y  I  V  S  S  K  I  F  F  Q  N  N  I  L  S  R   : S  K  I  *  L  Q  N  Q  *  S  K  *  I  L  I </second_frame>
            <third_frame>   *  R  T  R  *  I  P  G  E  R  S  R  Q  V  H  Q  D  G  S  V  L  H  T  S  K  C  K  Q  K  T  N  D  E  P  G  Y  *  D  A  F  K  R  Y  P  A  K  *  E  R  T  Y  T  T  W  F  L  R  R  F  *  R  K  R  A  I  K  I  E  D  I  *  R  *  Y  *  S  T  K  F  C  T  H  H  N  Y  S  G  D  P  *  I  V  I  L  G  D  R  L  I  L  H  L  N  H  S  S  C  D  I  V  L  Q  L  K  M  T  F  A  *  D  F  L  G  I  E  F  A  N  L  Y  I  M  D  F  *  Q  K  R  I  A  N  F  F  K  S  S  F  F  K  F  V  E  I  F  L  K  S  S  *  K  S  L  N  L  S  A  S  V  V  Q  T  H  E  A  K  L  S  L  Q  I  Q  N  F  L  K  N  F  K  Q  T  P  S  K  F  T  E  D  *  N  C  R  I  N  D  I  G  R  R  C  Q  S  S  *  T  K  F  Q  Q  F  M  C  I  I  F  V  *  Q  T  F  F  W  I  L  F  F  T  L  L  F  L  F  *  Q  V  L  Y  *  T  D  N  I  I  *  F  Q  V  K  Y  S  F  K  I  I  F  Y  Q  D  :  Q  K  Y  N  C  K  I  N  N  L  N  K  Y  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93190" stop="93465"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEELDEFPEREVVRYIKTALFCTQANANRRPMMSQVIEMLSRDIQLNEKELTPPGFFEDSEGSVQSRLKISRGNTSQQSSVHITITQVTPR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93745" stop="93960"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISNKRHLSSQKIEIAGLMISEGVVKVPRQNSSNLCVLFLYDKHFFGSCFLPYYFYSDRYYIKPITLYSFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="98393" PGL_stop="93338"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98393" e_stop="97924"/>
            <exon e_start="95528" e_stop="95375"/>
            <exon e_start="95241" e_stop="94549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.554" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98393" e_stop="97924" e_length="470"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95528" e_stop="95375" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.554">
            <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95241" e_stop="94549" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98393" stop="97928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98369" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98369" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98369" stop="97924"/>
              <exon start="95528" stop="95431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98362" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="94918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98362" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="94987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98362" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98356" stop="97924"/>
              <exon start="95528" stop="95488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98348" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98347" stop="97955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98345" stop="97924"/>
              <exon start="95528" stop="95478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98342" stop="97924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98328" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="94968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98324" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98299" stop="97978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97969" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="94634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95443" stop="95375"/>
              <exon start="95241" stop="94650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94896" stop="94549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94896" stop="94549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTAGAGAGAAGGAAAATTCGAGAGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG : GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG : CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGACATTAGCTGCATTTTGTTGCATTGGATGTCTGAGTTTGTTTATTGTACTATTTAGGTCCTTTCTTAACTGGAGGTGAATTCATTATTTTCTTGTTTACAGAAACCTTATATTTCTTGAA</gDNA_template>
            <first_frame> Y  *  R  E  G  K  F  E  R  F  C  R  L  *  R  E  K  G  E  K  R  R  E  M  A  A  F  D  A  F  S  M  D  G  E  V  P  A  P  A  A  S  T  P  F  D  D  G  D  Y  D  G  S  Y  T  A  F  S  N  A  D  T  P  P  F  H  G  S  G  G  F  G  G  D  Y  D  E  V  T  V  E  H  V  S  H  T  V  D  S  P  D  P  Y  G  Y  G  S  D  S  F  P  N  Q  T  G  S  F  G  A  S  A  A  P  I  S  N  G  N  G  K  P  Y  D  L  G  E  D  T  E  G  I  F  S  S  D  G  P  V  L  P  P  P  N  E  M  R  E  E  G  F  A  L  R  E  W  R  R :   Q  N  A  I  R  L  E  E  K  E  K  R  E  K  E  I  R  S  Q  I  I  E  E  G  E  E  Y  K  K  A  F  Y  E  K  R  N  L  S  I  E  T  N  K  T  T  N  R  E  K  E  K  :  L  Y  L  T  S  Q  E  K  F  H  K  E  A  D  K  Q  Y  W  K  A  I  A  E  L  I  P  K  E  V  P  S  I  E  K  K  G  R  K  K  D  Q  D  K  K  P  S  I  T  V  V  Q  G  P  K  P  G  K  P  T  D  L  S  R  M  R  H  I  L  L  K  L  K  H  T  P  P  P  H  M  I  P  P  P  P  A  P  A  K  D  A  K  V  G  K  D  G  K  D  T  K  D  A  K  A  G  K  D  G  K  D  T  K  N  A  K  D  T  V  A  P  N  G  T  P  D  A  P  T  S  D  A  K  V  T  Q  T  S  E  E  P  T  A  A  E  *  S  A  F  S  L  I  S  L  V  F  D  V  V  M  C  Y  P  L  T  Y  T  L  F  S  L  *  I  L  Y  H  L  L  Y  F  V  S  F  Y  Y  Y  S  I  G  S  *  Q  T  L  A  A  F  C  C  I  G  C  L  S  L  F  I  V  L  F  R  S  F  L  N  W  R  *  I  H  Y  F  L  V  Y  R  N  L  I  F  L  E </first_frame>
            <second_frame>  T  R  E  K  E  N  S  R  D  F  A  D  C  R  E  R  K  E  R  K  E  G  K  W  L  H  L  M  R  S  V  W  T  V  R  Y  R  H  R  R  H  Q  H  R  S  M  M  E  T  T  T  A  L  T  P  P  S  P  T  P  I  R  R  R  F  T  A  L  E  D  S  V  E  T  M  T  K  *  R  W  N  T  Y  L  I  P  S  I  V  P  I  P  T  D  T  G  Q  I  R  F  Q  T  K  P  V  H  L  E  L  L  Q  L  R  S  R  T  G  M  V  S  P  T  I  *  V  K  I  L  R  E  F  S  V  P  M  D  P  F  S  P  L  R  M  K  C  V  R  K  V  L  R  S  A  N  G  E   : G  K  M  L  S  V  L  R  R  R  R  R  E  K  R  K  S  E  A  K  L  L  R  K  V  K  N  I  R  K  H  S  M  R  K  E  I  S  V  L  R  P  T  R  Q  L  T  A  R  K  K  S :   C  T  *  L  V  K  R  S  S  I  K  K  L  I  S  N  I  G  K  P  *  Q  S  S  F  P  R  R  C  P  A  L  R  R  R  E  G  R  R  I  K  I  R  S  H  P  S  Q  S  S  K  G  L  N  L  G  N  L  P  I  F  Q  G  C  A  T  Y  C  *  S  L  S  T  P  H  H  L  T  *  Y  H  P  L  L  P  L  P  R  T  P  K  L  G  R  M  E  K  T  P  R  M  P  K  L  E  R  T  E  K  T  P  R  M  L  K  I  L  *  H  Q  M  G  L  Q  M  H  L  P  V  M  P  K  L  L  R  H  Q  K  N  L  L  L  Q  N  D  R  L  L  A  *  F  L  *  S  L  M  L  *  C  V  I  L  L  H  I  L  F  F  L  Y  E  F  C  I  I  Y  Y  I  L  C  H  S  T  T  I  L  L  V  R  D  R  H  *  L  H  F  V  A  L  D  V  *  V  C  L  L  Y  Y  L  G  P  F  L  T  G  G  E  F  I  I  F  L  F  T  E  T  L  Y  F  L   </second_frame>
            <third_frame>   L  E  R  R  K  I  R  E  I  L  Q  T  V  E  R  E  R  R  E  K  K  G  N  G  C  I  *  C  V  Q  Y  G  R  *  G  T  G  T  G  G  I  N  T  V  R  *  W  R  L  R  R  L  L  H  R  L  L  Q  R  R  Y  A  A  V  S  R  L  W  R  I  R  W  R  L  *  R  S  N  G  G  T  R  I  S  Y  R  R  *  S  R  S  L  R  I  R  V  R  F  V  S  K  P  N  R  F  I  W  S  F  C  S  S  D  L  E  R  E  W  *  A  L  R  S  R  *  R  Y  *  G  N  F  Q  F  R  W  T  R  S  P  P  S  E  *  N  A  *  G  R  F  C  A  P  R  M  A  K  :  A  K  C  Y  P  S  *  G  E  G  E  E  R  K  G  N  Q  K  P  N  Y  *  G  R  *  R  I  *  E  S  I  L  *  E  K  K  S  Q  Y  *  D  Q  Q  D  N  *  P  R  E  R  K   : A  V  L  D  *  S  R  E  V  P  *  R  S  *  *  A  I  L  E  S  H  S  R  A  H  S  Q  G  G  A  Q  H  *  E  E  G  K  E  E  G  S  R  *  E  A  I  H  H  S  R  P  R  A  *  T  W  E  T  Y  R  S  F  K  D  A  P  H  T  A  E  A  *  A  H  P  T  T  S  H  D  T  T  P  S  C  P  C  Q  G  R  Q  S  W  E  G  W  K  R  H  Q  G  C  Q  S  W  K  G  R  K  R  H  Q  E  C  *  R  Y  C  S  T  K  W  D  S  R  C  T  Y  Q  *  C  Q  S  Y  S  D  I  R  R  T  Y  C  C  R  M  I  G  F  *  P  N  F  F  S  L  *  C  C  N  V  L  S  S  Y  I  Y  S  F  F  S  M  N  F  V  S  F  T  I  F  C  V  I  L  L  L  F  Y  W  F  V  T  D  I  S  C  I  L  L  H  W  M  S  E  F  V  Y  C  T  I  *  V  L  S  *  L  E  V  N  S  L  F  S  C  L  Q  K  P  Y  I  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98351" stop="97924"/>
                    <exon start="95528" stop="95375"/>
                    <exon start="95241" stop="94807"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKGEKRREMAAFDAFSMDGEVPAPAASTPFDDGDYDGSYTAFSNADTPPFHGSGGFGGDYDEVTVEHVSHTVDSPDPYGYGSDSFPNQTGSFGASAAPISNGNGKPYDLGEDTEGIFSSDGPVLPPPNEMREEGFALREWRRQNAIRLEEKEKREKEIRSQIIEEGEEYKKAFYEKRNLSIETNKTTNREKEKLYLTSQEKFHKEADKQYWKAIAELIPKEVPSIEKKGRKKDQDKKPSITVVQGPKPGKPTDLSRMRHILLKLKHTPPPHMIPPPPAPAKDAKVGKDGKDTKDAKAGKDGKDTKNAKDTVAPNGTPDAPTSDAKVTQTSEEPTAAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="98393" e_stop="97924"/>
            <exon e_start="95528" e_stop="95375"/>
            <exon e_start="95241" e_stop="94667"/>
            <exon e_start="94042" e_stop="94023"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.554" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.911" e_score="0.994"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98393" e_stop="97924" e_length="470"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95528" e_stop="95375" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.554">
            <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="95241" e_stop="94667" e_length="575"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.911">
            <gDNA_intron_boundary i_start="94666" i_stop="94043" i_length="624"/>
          </intron>
          <exon e_serial="4" e_score="0.650">
            <gDNA_exon_boundary e_start="94042" e_stop="94023" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98393" stop="97928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98369" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98369" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98369" stop="97924"/>
              <exon start="95528" stop="95431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98362" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="94918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98362" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="94987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98362" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98356" stop="97924"/>
              <exon start="95528" stop="95488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98348" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98347" stop="97955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98345" stop="97924"/>
              <exon start="95528" stop="95478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98342" stop="97924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98328" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="94968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98324" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98299" stop="97978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94990" stop="94667"/>
              <exon start="94042" stop="94023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTAGAGAGAAGGAAAATTCGAGAGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG : GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG : CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACAGAC : AAAACTACGCGGAAAAAAAA</gDNA_template>
            <first_frame> Y  *  R  E  G  K  F  E  R  F  C  R  L  *  R  E  K  G  E  K  R  R  E  M  A  A  F  D  A  F  S  M  D  G  E  V  P  A  P  A  A  S  T  P  F  D  D  G  D  Y  D  G  S  Y  T  A  F  S  N  A  D  T  P  P  F  H  G  S  G  G  F  G  G  D  Y  D  E  V  T  V  E  H  V  S  H  T  V  D  S  P  D  P  Y  G  Y  G  S  D  S  F  P  N  Q  T  G  S  F  G  A  S  A  A  P  I  S  N  G  N  G  K  P  Y  D  L  G  E  D  T  E  G  I  F  S  S  D  G  P  V  L  P  P  P  N  E  M  R  E  E  G  F  A  L  R  E  W  R  R :   Q  N  A  I  R  L  E  E  K  E  K  R  E  K  E  I  R  S  Q  I  I  E  E  G  E  E  Y  K  K  A  F  Y  E  K  R  N  L  S  I  E  T  N  K  T  T  N  R  E  K  E  K  :  L  Y  L  T  S  Q  E  K  F  H  K  E  A  D  K  Q  Y  W  K  A  I  A  E  L  I  P  K  E  V  P  S  I  E  K  K  G  R  K  K  D  Q  D  K  K  P  S  I  T  V  V  Q  G  P  K  P  G  K  P  T  D  L  S  R  M  R  H  I  L  L  K  L  K  H  T  P  P  P  H  M  I  P  P  P  P  A  P  A  K  D  A  K  V  G  K  D  G  K  D  T  K  D  A  K  A  G  K  D  G  K  D  T  K  N  A  K  D  T  V  A  P  N  G  T  P  D  A  P  T  S  D  A  K  V  T  Q  T  S  E  E  P  T  A  A  E  *  S  A  F  S  L  I  S  L  V  F  D  V  V  M  C  Y  P  L  T  Y  T  L  F  S  L  *  I  L  Y  H  L  L  Y  F  V  S  F  Y  Y  Y  S  I  G  S  *  Q  T :   K  L  R  G  K  K  </first_frame>
            <second_frame>  T  R  E  K  E  N  S  R  D  F  A  D  C  R  E  R  K  E  R  K  E  G  K  W  L  H  L  M  R  S  V  W  T  V  R  Y  R  H  R  R  H  Q  H  R  S  M  M  E  T  T  T  A  L  T  P  P  S  P  T  P  I  R  R  R  F  T  A  L  E  D  S  V  E  T  M  T  K  *  R  W  N  T  Y  L  I  P  S  I  V  P  I  P  T  D  T  G  Q  I  R  F  Q  T  K  P  V  H  L  E  L  L  Q  L  R  S  R  T  G  M  V  S  P  T  I  *  V  K  I  L  R  E  F  S  V  P  M  D  P  F  S  P  L  R  M  K  C  V  R  K  V  L  R  S  A  N  G  E   : G  K  M  L  S  V  L  R  R  R  R  R  E  K  R  K  S  E  A  K  L  L  R  K  V  K  N  I  R  K  H  S  M  R  K  E  I  S  V  L  R  P  T  R  Q  L  T  A  R  K  K  S :   C  T  *  L  V  K  R  S  S  I  K  K  L  I  S  N  I  G  K  P  *  Q  S  S  F  P  R  R  C  P  A  L  R  R  R  E  G  R  R  I  K  I  R  S  H  P  S  Q  S  S  K  G  L  N  L  G  N  L  P  I  F  Q  G  C  A  T  Y  C  *  S  L  S  T  P  H  H  L  T  *  Y  H  P  L  L  P  L  P  R  T  P  K  L  G  R  M  E  K  T  P  R  M  P  K  L  E  R  T  E  K  T  P  R  M  L  K  I  L  *  H  Q  M  G  L  Q  M  H  L  P  V  M  P  K  L  L  R  H  Q  K  N  L  L  L  Q  N  D  R  L  L  A  *  F  L  *  S  L  M  L  *  C  V  I  L  L  H  I  L  F  F  L  Y  E  F  C  I  I  Y  Y  I  L  C  H  S  T  T  I  L  L  V  R  D  R   : Q  N  Y  A  E  K  K </second_frame>
            <third_frame>   L  E  R  R  K  I  R  E  I  L  Q  T  V  E  R  E  R  R  E  K  K  G  N  G  C  I  *  C  V  Q  Y  G  R  *  G  T  G  T  G  G  I  N  T  V  R  *  W  R  L  R  R  L  L  H  R  L  L  Q  R  R  Y  A  A  V  S  R  L  W  R  I  R  W  R  L  *  R  S  N  G  G  T  R  I  S  Y  R  R  *  S  R  S  L  R  I  R  V  R  F  V  S  K  P  N  R  F  I  W  S  F  C  S  S  D  L  E  R  E  W  *  A  L  R  S  R  *  R  Y  *  G  N  F  Q  F  R  W  T  R  S  P  P  S  E  *  N  A  *  G  R  F  C  A  P  R  M  A  K  :  A  K  C  Y  P  S  *  G  E  G  E  E  R  K  G  N  Q  K  P  N  Y  *  G  R  *  R  I  *  E  S  I  L  *  E  K  K  S  Q  Y  *  D  Q  Q  D  N  *  P  R  E  R  K   : A  V  L  D  *  S  R  E  V  P  *  R  S  *  *  A  I  L  E  S  H  S  R  A  H  S  Q  G  G  A  Q  H  *  E  E  G  K  E  E  G  S  R  *  E  A  I  H  H  S  R  P  R  A  *  T  W  E  T  Y  R  S  F  K  D  A  P  H  T  A  E  A  *  A  H  P  T  T  S  H  D  T  T  P  S  C  P  C  Q  G  R  Q  S  W  E  G  W  K  R  H  Q  G  C  Q  S  W  K  G  R  K  R  H  Q  E  C  *  R  Y  C  S  T  K  W  D  S  R  C  T  Y  Q  *  C  Q  S  Y  S  D  I  R  R  T  Y  C  C  R  M  I  G  F  *  P  N  F  F  S  L  *  C  C  N  V  L  S  S  Y  I  Y  S  F  F  S  M  N  F  V  S  F  T  I  F  C  V  I  L  L  L  F  Y  W  F  V  T  D  :  K  T  T  R  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98351" stop="97924"/>
                    <exon start="95528" stop="95375"/>
                    <exon start="95241" stop="94807"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKGEKRREMAAFDAFSMDGEVPAPAASTPFDDGDYDGSYTAFSNADTPPFHGSGGFGGDYDEVTVEHVSHTVDSPDPYGYGSDSFPNQTGSFGASAAPISNGNGKPYDLGEDTEGIFSSDGPVLPPPNEMREEGFALREWRRQNAIRLEEKEKREKEIRSQIIEEGEEYKKAFYEKRNLSIETNKTTNREKEKLYLTSQEKFHKEADKQYWKAIAELIPKEVPSIEKKGRKKDQDKKPSITVVQGPKPGKPTDLSRMRHILLKLKHTPPPHMIPPPPAPAKDAKVGKDGKDTKDAKAGKDGKDTKNAKDTVAPNGTPDAPTSDAKVTQTSEEPTAAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="98393" e_stop="97924"/>
            <exon e_start="95528" e_stop="95375"/>
            <exon e_start="95241" e_stop="94670"/>
            <exon e_start="94278" e_stop="94257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.554" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.991"/>
          <exon-only e_score="0.864"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98393" e_stop="97924" e_length="470"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97923" i_stop="95529" i_length="2395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95528" e_stop="95375" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.924" acc_prob="0.554">
            <gDNA_intron_boundary i_start="95374" i_stop="95242" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="95241" e_stop="94670" e_length="572"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94669" i_stop="94279" i_length="391"/>
          </intron>
          <exon e_serial="4" e_score="0.864">
            <gDNA_exon_boundary e_start="94278" e_stop="94257" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98393" stop="97928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98369" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98369" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98369" stop="97924"/>
              <exon start="95528" stop="95431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98362" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="94918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98362" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="94987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98362" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98356" stop="97924"/>
              <exon start="95528" stop="95488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98348" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98347" stop="97955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98345" stop="97924"/>
              <exon start="95528" stop="95478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98342" stop="97924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98328" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="94968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98324" stop="97924"/>
              <exon start="95528" stop="95375"/>
              <exon start="95241" stop="95207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98299" stop="97978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95007" stop="94670"/>
              <exon start="94278" stop="94257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTAGAGAGAAGGAAAATTCGAGAGATTTTGCAGACTGTAGAGAGAGAAAGGAGAGAAAAGAAGGGAAATGGCTGCATTTGATGCGTTCAGTATGGACGGTGAGGTACCGGCACCGGCGGCATCAACACCGTTCGATGATGGAGACTACGACGGCTCTTACACCGCCTTCTCCAACGCCGATACGCCGCCGTTTCACGGCTCTGGAGGATTCGGTGGAGACTATGACGAAGTAACGGTGGAACACGTATCTCATACCGTCGATAGTCCCGATCCCTACGGATACGGGTCAGATTCGTTTCCAAACCAAACCGGTTCATTTGGAGCTTCTGCAGCTCCGATCTCGAACGGGAATGGTAAGCCCTACGATCTAGGTGAAGATACTGAGGGAATTTTCAGTTCCGATGGACCCGTTCTCCCCCCTCCGAATGAAATGCGTGAGGAAGGTTTTGCGCTCCGCGAATGGCGAAG : GCAAAATGCTATCCGTCTTGAGGAGAAGGAGAAGAGAGAAAAGGAAATCAGAAGCCAAATTATTGAGGAAGGTGAAGAATATAAGAAAGCATTCTATGAGAAAAGAAATCTCAGTATTGAGACCAACAAGACAACTAACCGCGAGAAAGAAAAG : CTGTACTTGACTAGTCAAGAGAAGTTCCATAAAGAAGCTGATAAGCAATATTGGAAAGCCATAGCAGAGCTCATTCCCAAGGAGGTGCCCAGCATTGAGAAGAAGGGAAGGAAGAAGGATCAAGATAAGAAGCCATCCATCACAGTCGTCCAAGGGCCTAAACCTGGGAAACCTACCGATCTTTCAAGGATGCGCCACATACTGCTGAAGCTTAAGCACACCCCACCACCTCACATGATACCACCCCCTCCTGCCCCTGCCAAGGACGCCAAAGTTGGGAAGGATGGAAAAGACACCAAGGATGCCAAAGCTGGAAAGGACGGAAAAGACACCAAGAATGCTAAAGATACTGTAGCACCAAATGGGACTCCAGATGCACCTACCAGTGATGCCAAAGTTACTCAGACATCAGAAGAACCTACTGCTGCAGAATGATCGGCTTTTAGCCTAATTTCTTTAGTCTTTGATGTTGTAATGTGTTATCCTCTTACATATACTCTTTTTTCTCTATGAATTTTGTATCATTTACTATATTTTGTGTCATTCTACTACTATTCTATTGGTTCGTGACA : AAAAAAAAAATTAGAAAAAAAA</gDNA_template>
            <first_frame> Y  *  R  E  G  K  F  E  R  F  C  R  L  *  R  E  K  G  E  K  R  R  E  M  A  A  F  D  A  F  S  M  D  G  E  V  P  A  P  A  A  S  T  P  F  D  D  G  D  Y  D  G  S  Y  T  A  F  S  N  A  D  T  P  P  F  H  G  S  G  G  F  G  G  D  Y  D  E  V  T  V  E  H  V  S  H  T  V  D  S  P  D  P  Y  G  Y  G  S  D  S  F  P  N  Q  T  G  S  F  G  A  S  A  A  P  I  S  N  G  N  G  K  P  Y  D  L  G  E  D  T  E  G  I  F  S  S  D  G  P  V  L  P  P  P  N  E  M  R  E  E  G  F  A  L  R  E  W  R  R :   Q  N  A  I  R  L  E  E  K  E  K  R  E  K  E  I  R  S  Q  I  I  E  E  G  E  E  Y  K  K  A  F  Y  E  K  R  N  L  S  I  E  T  N  K  T  T  N  R  E  K  E  K  :  L  Y  L  T  S  Q  E  K  F  H  K  E  A  D  K  Q  Y  W  K  A  I  A  E  L  I  P  K  E  V  P  S  I  E  K  K  G  R  K  K  D  Q  D  K  K  P  S  I  T  V  V  Q  G  P  K  P  G  K  P  T  D  L  S  R  M  R  H  I  L  L  K  L  K  H  T  P  P  P  H  M  I  P  P  P  P  A  P  A  K  D  A  K  V  G  K  D  G  K  D  T  K  D  A  K  A  G  K  D  G  K  D  T  K  N  A  K  D  T  V  A  P  N  G  T  P  D  A  P  T  S  D  A  K  V  T  Q  T  S  E  E  P  T  A  A  E  *  S  A  F  S  L  I  S  L  V  F  D  V  V  M  C  Y  P  L  T  Y  T  L  F  S  L  *  I  L  Y  H  L  L  Y  F  V  S  F  Y  Y  Y  S  I  G  S  *  Q :   K  K  K  L  E  K  K </first_frame>
            <second_frame>  T  R  E  K  E  N  S  R  D  F  A  D  C  R  E  R  K  E  R  K  E  G  K  W  L  H  L  M  R  S  V  W  T  V  R  Y  R  H  R  R  H  Q  H  R  S  M  M  E  T  T  T  A  L  T  P  P  S  P  T  P  I  R  R  R  F  T  A  L  E  D  S  V  E  T  M  T  K  *  R  W  N  T  Y  L  I  P  S  I  V  P  I  P  T  D  T  G  Q  I  R  F  Q  T  K  P  V  H  L  E  L  L  Q  L  R  S  R  T  G  M  V  S  P  T  I  *  V  K  I  L  R  E  F  S  V  P  M  D  P  F  S  P  L  R  M  K  C  V  R  K  V  L  R  S  A  N  G  E   : G  K  M  L  S  V  L  R  R  R  R  R  E  K  R  K  S  E  A  K  L  L  R  K  V  K  N  I  R  K  H  S  M  R  K  E  I  S  V  L  R  P  T  R  Q  L  T  A  R  K  K  S :   C  T  *  L  V  K  R  S  S  I  K  K  L  I  S  N  I  G  K  P  *  Q  S  S  F  P  R  R  C  P  A  L  R  R  R  E  G  R  R  I  K  I  R  S  H  P  S  Q  S  S  K  G  L  N  L  G  N  L  P  I  F  Q  G  C  A  T  Y  C  *  S  L  S  T  P  H  H  L  T  *  Y  H  P  L  L  P  L  P  R  T  P  K  L  G  R  M  E  K  T  P  R  M  P  K  L  E  R  T  E  K  T  P  R  M  L  K  I  L  *  H  Q  M  G  L  Q  M  H  L  P  V  M  P  K  L  L  R  H  Q  K  N  L  L  L  Q  N  D  R  L  L  A  *  F  L  *  S  L  M  L  *  C  V  I  L  L  H  I  L  F  F  L  Y  E  F  C  I  I  Y  Y  I  L  C  H  S  T  T  I  L  L  V  R  D   : K  K  K  N  *  K  K   </second_frame>
            <third_frame>   L  E  R  R  K  I  R  E  I  L  Q  T  V  E  R  E  R  R  E  K  K  G  N  G  C  I  *  C  V  Q  Y  G  R  *  G  T  G  T  G  G  I  N  T  V  R  *  W  R  L  R  R  L  L  H  R  L  L  Q  R  R  Y  A  A  V  S  R  L  W  R  I  R  W  R  L  *  R  S  N  G  G  T  R  I  S  Y  R  R  *  S  R  S  L  R  I  R  V  R  F  V  S  K  P  N  R  F  I  W  S  F  C  S  S  D  L  E  R  E  W  *  A  L  R  S  R  *  R  Y  *  G  N  F  Q  F  R  W  T  R  S  P  P  S  E  *  N  A  *  G  R  F  C  A  P  R  M  A  K  :  A  K  C  Y  P  S  *  G  E  G  E  E  R  K  G  N  Q  K  P  N  Y  *  G  R  *  R  I  *  E  S  I  L  *  E  K  K  S  Q  Y  *  D  Q  Q  D  N  *  P  R  E  R  K   : A  V  L  D  *  S  R  E  V  P  *  R  S  *  *  A  I  L  E  S  H  S  R  A  H  S  Q  G  G  A  Q  H  *  E  E  G  K  E  E  G  S  R  *  E  A  I  H  H  S  R  P  R  A  *  T  W  E  T  Y  R  S  F  K  D  A  P  H  T  A  E  A  *  A  H  P  T  T  S  H  D  T  T  P  S  C  P  C  Q  G  R  Q  S  W  E  G  W  K  R  H  Q  G  C  Q  S  W  K  G  R  K  R  H  Q  E  C  *  R  Y  C  S  T  K  W  D  S  R  C  T  Y  Q  *  C  Q  S  Y  S  D  I  R  R  T  Y  C  C  R  M  I  G  F  *  P  N  F  F  S  L  *  C  C  N  V  L  S  S  Y  I  Y  S  F  F  S  M  N  F  V  S  F  T  I  F  C  V  I  L  L  L  F  Y  W  F  V  T  :  K  K  K  I  R  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98351" stop="97924"/>
                    <exon start="95528" stop="95375"/>
                    <exon start="95241" stop="94807"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REKGEKRREMAAFDAFSMDGEVPAPAASTPFDDGDYDGSYTAFSNADTPPFHGSGGFGGDYDEVTVEHVSHTVDSPDPYGYGSDSFPNQTGSFGASAAPISNGNGKPYDLGEDTEGIFSSDGPVLPPPNEMREEGFALREWRRQNAIRLEEKEKREKEIRSQIIEEGEEYKKAFYEKRNLSIETNKTTNREKEKLYLTSQEKFHKEADKQYWKAIAELIPKEVPSIEKKGRKKDQDKKPSITVVQGPKPGKPTDLSRMRHILLKLKHTPPPHMIPPPPAPAKDAKVGKDGKDTKDAKAGKDGKDTKNAKDTVAPNGTPDAPTSDAKVTQTSEEPTAAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="94095" e_stop="94053"/>
            <exon e_start="93994" e_stop="93590"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.628"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.628">
            <gDNA_exon_boundary e_start="94095" e_stop="94053" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94052" i_stop="93995" i_length="58"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="93994" e_stop="93590" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94095" stop="94053"/>
              <exon start="93994" stop="93590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392482" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATTTAGATTATTGATTTTGCAATTATATTTTTGCTTATTT : TTATCTTGATAAAATATTATTTTGAAAGAATATTTTACTTGAAACTATATAATGTTATCGGTTTAATATAATACCTGTCAGAATAAAAATAATAAGGTAAAAAACAGGATCCAAAAAAATGTTTGTCATACAAAAATAATACACATAAATTGCTGGAATTTTGTCTAGGAACTTTGACAACGCCTTCCGATATCATTAATCCTGCAATTTCAATCTTCTGTGAACTTAGATGGCGTTTGTTTGAAATTTTTCAAAAAATTTTGAATTTGCAAACTCAATTTTGCTTCATGTGTCTGAACTACACTTGCAGAAAGGTTCAAACTTTTCTATGAAGATTTCAGAAATATTTCAACAAATTTGAAAAAACTAGATTTGAAAAAGTTAGCTATCCTTTTTTGTTAAAAA</gDNA_template>
            <first_frame> F  I  *  I  I  D  F  A  I  I  F  L  L  I   : F  I  L  I  K  Y  Y  F  E  R  I  F  Y  L  K  L  Y  N  V  I  G  L  I  *  Y  L  S  E  *  K  *  *  G  K  K  Q  D  P  K  K  C  L  S  Y  K  N  N  T  H  K  L  L  E  F  C  L  G  T  L  T  T  P  S  D  I  I  N  P  A  I  S  I  F  C  E  L  R  W  R  L  F  E  I  F  Q  K  I  L  N  L  Q  T  Q  F  C  F  M  C  L  N  Y  T  C  R  K  V  Q  T  F  L  *  R  F  Q  K  Y  F  N  K  F  E  K  T  R  F  E  K  V  S  Y  P  F  L  L  K  </first_frame>
            <second_frame>  L  F  R  L  L  I  L  Q  L  Y  F  C  L  F  :  L  S  *  *  N  I  I  L  K  E  Y  F  T  *  N  Y  I  M  L  S  V  *  Y  N  T  C  Q  N  K  N  N  K  V  K  N  R  I  Q  K  N  V  C  H  T  K  I  I  H  I  N  C  W  N  F  V  *  E  L  *  Q  R  L  P  I  S  L  I  L  Q  F  Q  S  S  V  N  L  D  G  V  C  L  K  F  F  K  K  F  *  I  C  K  L  N  F  A  S  C  V  *  T  T  L  A  E  R  F  K  L  F  Y  E  D  F  R  N  I  S  T  N  L  K  K  L  D  L  K  K  L  A  I  L  F  C  *  K </second_frame>
            <third_frame>   Y  L  D  Y  *  F  C  N  Y  I  F  A  Y  F :   Y  L  D  K  I  L  F  *  K  N  I  L  L  E  T  I  *  C  Y  R  F  N  I  I  P  V  R  I  K  I  I  R  *  K  T  G  S  K  K  M  F  V  I  Q  K  *  Y  T  *  I  A  G  I  L  S  R  N  F  D  N  A  F  R  Y  H  *  S  C  N  F  N  L  L  *  T  *  M  A  F  V  *  N  F  S  K  N  F  E  F  A  N  S  I  L  L  H  V  S  E  L  H  L  Q  K  G  S  N  F  S  M  K  I  S  E  I  F  Q  Q  I  *  K  N  *  I  *  K  S  *  L  S  F  F  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93899" stop="93663"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKKQDPKKCLSYKNNTHKLLEFCLGTLTTPSDIINPAISIFCELRWRLFEIFQKILNLQTQFCFMCLNYTCRKVQTFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="94095" e_stop="94055"/>
            <exon e_start="93994" e_stop="93338"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.610"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.610">
            <gDNA_exon_boundary e_start="94095" e_stop="94055" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94054" i_stop="93995" i_length="60"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93994" e_stop="93338" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94095" stop="94055"/>
              <exon start="93994" stop="93338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369484" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATTTAGATTATTGATTTTGCAATTATATTTTTGCTTAT : TTATCTTGATAAAATATTATTTTGAAAGAATATTTTACTTGAAACTATATAATGTTATCGGTTTAATATAATACCTGTCAGAATAAAAATAATAAGGTAAAAAACAGGATCCAAAAAAATGTTTGTCATACAAAAATAATACACATAAATTGCTGGAATTTTGTCTAGGAACTTTGACAACGCCTTCCGATATCATTAATCCTGCAATTTCAATCTTCTGTGAACTTAGATGGCGTTTGTTTGAAATTTTTCAAAAAATTTTGAATTTGCAAACTCAATTTTGCTTCATGTGTCTGAACTACACTTGCAGAAAGGTTCAAACTTTTCTATGAAGATTTCAGAAATATTTCAACAAATTTGAAAAAACTAGATTTGAAAAAGTTAGCTATCCTTTTTTGTTAAAAATCCATAATATACAAGTTTGCAAACTCAATTCCTAGAAAATCTCAAGCAAACGTCATCTTAAGCTGCAAAACAATGTCGCAGGAAGAATGATTCAAGTGCAGGATCAGGCGGTCACCAAGGATGACTATCTAGGGGTCACCTGAGTAATTGTGATGTGTACAGAACTTTGTTGACTAGTATTACCTCTAGATATCTTCAATCTTGATTGCACGCTTCCTTCAGAATCTTCGAAGAAACCAGGTGGTGTAAGTT</gDNA_template>
            <first_frame> F  I  *  I  I  D  F  A  I  I  F  L  L  I :   Y  L  D  K  I  L  F  *  K  N  I  L  L  E  T  I  *  C  Y  R  F  N  I  I  P  V  R  I  K  I  I  R  *  K  T  G  S  K  K  M  F  V  I  Q  K  *  Y  T  *  I  A  G  I  L  S  R  N  F  D  N  A  F  R  Y  H  *  S  C  N  F  N  L  L  *  T  *  M  A  F  V  *  N  F  S  K  N  F  E  F  A  N  S  I  L  L  H  V  S  E  L  H  L  Q  K  G  S  N  F  S  M  K  I  S  E  I  F  Q  Q  I  *  K  N  *  I  *  K  S  *  L  S  F  F  V  K  N  P  *  Y  T  S  L  Q  T  Q  F  L  E  N  L  K  Q  T  S  S  *  A  A  K  Q  C  R  R  K  N  D  S  S  A  G  S  G  G  H  Q  G  *  L  S  R  G  H  L  S  N  C  D  V  Y  R  T  L  L  T  S  I  T  S  R  Y  L  Q  S  *  L  H  A  S  F  R  I  F  E  E  T  R  W  C  K   </first_frame>
            <second_frame>  L  F  R  L  L  I  L  Q  L  Y  F  C  L   : F  I  L  I  K  Y  Y  F  E  R  I  F  Y  L  K  L  Y  N  V  I  G  L  I  *  Y  L  S  E  *  K  *  *  G  K  K  Q  D  P  K  K  C  L  S  Y  K  N  N  T  H  K  L  L  E  F  C  L  G  T  L  T  T  P  S  D  I  I  N  P  A  I  S  I  F  C  E  L  R  W  R  L  F  E  I  F  Q  K  I  L  N  L  Q  T  Q  F  C  F  M  C  L  N  Y  T  C  R  K  V  Q  T  F  L  *  R  F  Q  K  Y  F  N  K  F  E  K  T  R  F  E  K  V  S  Y  P  F  L  L  K  I  H  N  I  Q  V  C  K  L  N  S  *  K  I  S  S  K  R  H  L  K  L  Q  N  N  V  A  G  R  M  I  Q  V  Q  D  Q  A  V  T  K  D  D  Y  L  G  V  T  *  V  I  V  M  C  T  E  L  C  *  L  V  L  P  L  D  I  F  N  L  D  C  T  L  P  S  E  S  S  K  K  P  G  G  V  S  </second_frame>
            <third_frame>   Y  L  D  Y  *  F  C  N  Y  I  F  A  Y  :  L  S  *  *  N  I  I  L  K  E  Y  F  T  *  N  Y  I  M  L  S  V  *  Y  N  T  C  Q  N  K  N  N  K  V  K  N  R  I  Q  K  N  V  C  H  T  K  I  I  H  I  N  C  W  N  F  V  *  E  L  *  Q  R  L  P  I  S  L  I  L  Q  F  Q  S  S  V  N  L  D  G  V  C  L  K  F  F  K  K  F  *  I  C  K  L  N  F  A  S  C  V  *  T  T  L  A  E  R  F  K  L  F  Y  E  D  F  R  N  I  S  T  N  L  K  K  L  D  L  K  K  L  A  I  L  F  C  *  K  S  I  I  Y  K  F  A  N  S  I  P  R  K  S  Q  A  N  V  I  L  S  C  K  T  M  S  Q  E  E  *  F  K  C  R  I  R  R  S  P  R  M  T  I  *  G  S  P  E  *  L  *  C  V  Q  N  F  V  D  *  Y  Y  L  *  I  S  S  I  L  I  A  R  F  L  Q  N  L  R  R  N  Q  V  V  *  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93899" stop="93663"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKKQDPKKCLSYKNNTHKLLEFCLGTLTTPSDIINPAISIFCELRWRLFEIFQKILNLQTQFCFMCLNYTCRKVQTFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="99200" PGL_stop="100459"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99200" e_stop="99214"/>
            <exon e_start="99785" e_stop="100459"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="99200" e_stop="99214" e_length="15"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99215" i_stop="99784" i_length="570"/>
          </intron>
          <exon e_serial="2" e_score="0.936">
            <gDNA_exon_boundary e_start="99785" e_stop="100459" e_length="675"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99200" stop="99214"/>
              <exon start="99785" stop="100459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694948" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTTTTCCAATT : TTGCTGAAAACTAAAGATTCCATTAATCAATTGAGGAGGTTACATTTGGACATTAAATTGTACCCCTGAGGCTACAAAAAAACAATGCAAAAATAGACTACACAGTAAGCAAATTACAGCTTAACAAAATTTTCCACTCGTCCTATTTTGGTATCTAAAAAATGCGGGAGAAACCACAAAAGCGAAAGGTCTCAAAATCATATCCTAAATCAACTATGAAATCGTCAAAATTGGAGTGTACTCCGGAAAACGCATTGGACATGGCCAAGGTGTATTCAATGCCGGAAGAACTAACTCCCCAAAAGTATGCGGCTTTTGGTGCCCATCTTGAATGAAGATGCGAACTCATTCCAGGCTCTAACTGGCTTTTTAGAGATCTCCCAAAATCACATGGAAAATAGCAAGACATCCACAGTTTACAAATTTGAACTACCTGGCTCCCGAAAGGTGATTCAATTCTGATCTATCGATCCAGACACTTGCTTCTATTGTGAGCGTACATACTGGATATAGTCGAGCTGAAACAGCAGGACAGTGATTCATAGTAAAGATCCCAATTGGCTTCACAAATCACAGCGGCAGATGTTCCCATGTATGTTAAAATTTCTATGGGGTTGATGTACAAGCAGAGGTGAAGATCTTTATACATAGTTCATGGCATAGCGGAAGTATTCT</gDNA_template>
            <first_frame> F  L  F  P  I  :  L  L  K  T  K  D  S  I  N  Q  L  R  R  L  H  L  D  I  K  L  Y  P  *  G  Y  K  K  T  M  Q  K  *  T  T  Q  *  A  N  Y  S  L  T  K  F  S  T  R  P  I  L  V  S  K  K  C  G  R  N  H  K  S  E  R  S  Q  N  H  I  L  N  Q  L  *  N  R  Q  N  W  S  V  L  R  K  T  H  W  T  W  P  R  C  I  Q  C  R  K  N  *  L  P  K  S  M  R  L  L  V  P  I  L  N  E  D  A  N  S  F  Q  A  L  T  G  F  L  E  I  S  Q  N  H  M  E  N  S  K  T  S  T  V  Y  K  F  E  L  P  G  S  R  K  V  I  Q  F  *  S  I  D  P  D  T  C  F  Y  C  E  R  T  Y  W  I  *  S  S  *  N  S  R  T  V  I  H  S  K  D  P  N  W  L  H  K  S  Q  R  Q  M  F  P  C  M  L  K  F  L  W  G  *  C  T  S  R  G  E  D  L  Y  T  *  F  M  A  *  R  K  Y  S </first_frame>
            <second_frame>  F  F  F  Q  F :   C  *  K  L  K  I  P  L  I  N  *  G  G  Y  I  W  T  L  N  C  T  P  E  A  T  K  K  Q  C  K  N  R  L  H  S  K  Q  I  T  A  *  Q  N  F  P  L  V  L  F  W  Y  L  K  N  A  G  E  T  T  K  A  K  G  L  K  I  I  S  *  I  N  Y  E  I  V  K  I  G  V  Y  S  G  K  R  I  G  H  G  Q  G  V  F  N  A  G  R  T  N  S  P  K  V  C  G  F  W  C  P  S  *  M  K  M  R  T  H  S  R  L  *  L  A  F  *  R  S  P  K  I  T  W  K  I  A  R  H  P  Q  F  T  N  L  N  Y  L  A  P  E  R  *  F  N  S  D  L  S  I  Q  T  L  A  S  I  V  S  V  H  T  G  Y  S  R  A  E  T  A  G  Q  *  F  I  V  K  I  P  I  G  F  T  N  H  S  G  R  C  S  H  V  C  *  N  F  Y  G  V  D  V  Q  A  E  V  K  I  F  I  H  S  S  W  H  S  G  S  I   </second_frame>
            <third_frame>   S  F  S  N   : F  A  E  N  *  R  F  H  *  S  I  E  E  V  T  F  G  H  *  I  V  P  L  R  L  Q  K  N  N  A  K  I  D  Y  T  V  S  K  L  Q  L  N  K  I  F  H  S  S  Y  F  G  I  *  K  M  R  E  K  P  Q  K  R  K  V  S  K  S  Y  P  K  S  T  M  K  S  S  K  L  E  C  T  P  E  N  A  L  D  M  A  K  V  Y  S  M  P  E  E  L  T  P  Q  K  Y  A  A  F  G  A  H  L  E  *  R  C  E  L  I  P  G  S  N  W  L  F  R  D  L  P  K  S  H  G  K  *  Q  D  I  H  S  L  Q  I  *  T  T  W  L  P  K  G  D  S  I  L  I  Y  R  S  R  H  L  L  L  L  *  A  Y  I  L  D  I  V  E  L  K  Q  Q  D  S  D  S  *  *  R  S  Q  L  A  S  Q  I  T  A  A  D  V  P  M  Y  V  K  I  S  M  G  L  M  Y  K  Q  R  *  R  S  L  Y  I  V  H  G  I  A  E  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0065H17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="101061" PGL_stop="99786"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101061" e_stop="101052"/>
            <exon e_start="100973" e_stop="100900"/>
            <exon e_start="100554" e_stop="99786"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.792" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101061" e_stop="101052" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="101051" i_stop="100974" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100973" e_stop="100900" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.792">
            <gDNA_intron_boundary i_start="100899" i_stop="100555" i_length="345"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="100554" e_stop="99786" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101061" stop="101052"/>
              <exon start="100973" stop="100900"/>
              <exon start="100554" stop="99868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100463" stop="99786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100463" stop="99786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100459" stop="99786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694947" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAACACAG : GCTGCTGAAAGGGCTCTTGTTGCTCTGAAGTCTGAGCTGGCTCAATTTTCTCACAAGCGCCAGGGTTCTCCAAG : ATCATTGCAGCAGCAGGGATTTTCTAATAAAAGATTGAAACCTGAATATTCTCGGGGTGTGCAGCAGAGAGTACCATTGTCTGGTAGATTCCCGAAGAATACTTCCGCTATGCCATGAACTATGTATAAAGATCTTCACCTCTGCTTGTACATCAACCCCATAGAAATTTTAACATACATGGGAACATCTGCCGCTGTGATTTGTGAAGCCAATTGGGATCTTTACTATGAATCACTGTCCTGCTGTTTCAGCTCGACTATATCCAGTATGTACGCTCACAATAGAAGCAAGTGTCTGGATCGATAGATCAGAATTGAATCACCTTTCGGGAGCCAGGTAGTTCAAATTTGTAAACTGTGGATGTCTTGCTATTTTCCATGTGATTTTGGGAGATCTCTAAAAAGCCAGTTAGAGCCTGGAATGAGTTCGCATCTTCATTCAAGATGGGCACCAAAAGCCGCATACTTTTGGGGAGTTAGTTCTTCCGGCATTGAATACACCTTGGCCATGTCCAATGCGTTTTCCGGAGTACACTCCAATTTTGACGATTTCATAGTTGATTTAGGATATGATTTTGAGACCTTTCGCTTTTGTGGTTTCTCCCGCATTTTTTAGATACCAAAATAGGACGAGTGGAAAATTTTGTTAAGCTGTAATTTGCTTACTGTGTAGTCTATTTTTGCATTGTTTTTTTGTAGCCTCAGGGGTACAATTTAATGTCCAAATGTAACCTCCTCAATTGATTAATGGAATCTTTAGTTTTCAGCA</gDNA_template>
            <first_frame> *  N  T   : G  C  *  K  G  S  C  C  S  E  V  *  A  G  S  I  F  S  Q  A  P  G  F  S  K  :  I  I  A  A  A  G  I  F  *  *  K  I  E  T  *  I  F  S  G  C  A  A  E  S  T  I  V  W  *  I  P  E  E  Y  F  R  Y  A  M  N  Y  V  *  R  S  S  P  L  L  V  H  Q  P  H  R  N  F  N  I  H  G  N  I  C  R  C  D  L  *  S  Q  L  G  S  L  L  *  I  T  V  L  L  F  Q  L  D  Y  I  Q  Y  V  R  S  Q  *  K  Q  V  S  G  S  I  D  Q  N  *  I  T  F  R  E  P  G  S  S  N  L  *  T  V  D  V  L  L  F  S  M  *  F  W  E  I  S  K  K  P  V  R  A  W  N  E  F  A  S  S  F  K  M  G  T  K  S  R  I  L  L  G  S  *  F  F  R  H  *  I  H  L  G  H  V  Q  C  V  F  R  S  T  L  Q  F  *  R  F  H  S  *  F  R  I  *  F  *  D  L  S  L  L  W  F  L  P  H  F  L  D  T  K  I  G  R  V  E  N  F  V  K  L  *  F  A  Y  C  V  V  Y  F  C  I  V  F  L  *  P  Q  G  Y  N  L  M  S  K  C  N  L  L  N  *  L  M  E  S  L  V  F  S  </first_frame>
            <second_frame>  K  T  Q  :  A  A  E  R  A  L  V  A  L  K  S  E  L  A  Q  F  S  H  K  R  Q  G  S  P  R :   S  L  Q  Q  Q  G  F  S  N  K  R  L  K  P  E  Y  S  R  G  V  Q  Q  R  V  P  L  S  G  R  F  P  K  N  T  S  A  M  P  *  T  M  Y  K  D  L  H  L  C  L  Y  I  N  P  I  E  I  L  T  Y  M  G  T  S  A  A  V  I  C  E  A  N  W  D  L  Y  Y  E  S  L  S  C  C  F  S  S  T  I  S  S  M  Y  A  H  N  R  S  K  C  L  D  R  *  I  R  I  E  S  P  F  G  S  Q  V  V  Q  I  C  K  L  W  M  S  C  Y  F  P  C  D  F  G  R  S  L  K  S  Q  L  E  P  G  M  S  S  H  L  H  S  R  W  A  P  K  A  A  Y  F  W  G  V  S  S  S  G  I  E  Y  T  L  A  M  S  N  A  F  S  G  V  H  S  N  F  D  D  F  I  V  D  L  G  Y  D  F  E  T  F  R  F  C  G  F  S  R  I  F  *  I  P  K  *  D  E  W  K  I  L  L  S  C  N  L  L  T  V  *  S  I  F  A  L  F  F  C  S  L  R  G  T  I  *  C  P  N  V  T  S  S  I  D  *  W  N  L  *  F  S  A </second_frame>
            <third_frame>   K  H  R :   L  L  K  G  L  L  L  L  *  S  L  S  W  L  N  F  L  T  S  A  R  V  L  Q   : D  H  C  S  S  R  D  F  L  I  K  D  *  N  L  N  I  L  G  V  C  S  R  E  Y  H  C  L  V  D  S  R  R  I  L  P  L  C  H  E  L  C  I  K  I  F  T  S  A  C  T  S  T  P  *  K  F  *  H  T  W  E  H  L  P  L  *  F  V  K  P  I  G  I  F  T  M  N  H  C  P  A  V  S  A  R  L  Y  P  V  C  T  L  T  I  E  A  S  V  W  I  D  R  S  E  L  N  H  L  S  G  A  R  *  F  K  F  V  N  C  G  C  L  A  I  F  H  V  I  L  G  D  L  *  K  A  S  *  S  L  E  *  V  R  I  F  I  Q  D  G  H  Q  K  P  H  T  F  G  E  L  V  L  P  A  L  N  T  P  W  P  C  P  M  R  F  P  E  Y  T  P  I  L  T  I  S  *  L  I  *  D  M  I  L  R  P  F  A  F  V  V  S  P  A  F  F  R  Y  Q  N  R  T  S  G  K  F  C  *  A  V  I  C  L  L  C  S  L  F  L  H  C  F  F  V  A  S  G  V  Q  F  N  V  Q  M  *  P  P  Q  L  I  N  G  I  F  S  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100247" stop="99939"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRIESPFGSQVVQICKLWMSCYFPCDFGRSLKSQLEPGMSSHLHSRWAPKAAYFWGVSSSGIEYTLAMSNAFSGVHSNFDDFIVDLGYDFETFRFCGFSRIF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101060" stop="101052"/>
                    <exon start="100973" stop="100900"/>
                    <exon start="100554" stop="100437"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTQAAERALVALKSELAQFSHKRQGSPRSLQQQGFSNKRLKPEYSRGVQQRVPLSGRFPKNTSAMP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="107903" PGL_stop="107064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107903" e_stop="107713"/>
            <exon e_start="107450" e_stop="107240"/>
            <exon e_start="107157" e_stop="107064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107903" e_stop="107713" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.823">
            <gDNA_intron_boundary i_start="107712" i_stop="107451" i_length="262"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107450" e_stop="107240" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="107239" i_stop="107158" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107157" e_stop="107064" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107903" stop="107713"/>
              <exon start="107450" stop="107240"/>
              <exon start="107157" stop="107064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGCGTTACCAGGAGGATAAAATTATTTTAAAGCAATATGCCGAAAATGATCAGGTTGTTGACAATGGAAAGGTGATCAGATCTCAGTCTGAGGTTTTCCCCGCATTGTCTGATAATCACCAACCTATTGTCAGACCCCTGATTAGGTTGCAAGATAGAAACATTATTCTTACTCGTATTAATCCAATG : ATCCGTGATACTAGTGTTCTTGTGAGATTGAGACCTGCTTGGGAGGATCTCCGCAGCTATCTGACTGCAAGGGGTCGGAAGCGCTTTGAAGTTTATGTGTGCACAATGGCTGAAAGAGATTATGCTTTAGAAATGTGGCGCCTTCTTGATCCAGATTCAAACTTGATTAACTCACAAGAACTCTTGGATCGTATTGTCTGTGTCAAGTCTG : GCTTGAGGAAATCTTTGTTCAATGTATTCCAAGATGGAAATTGTCATCCTAAGATGGCATTGGTGATTGATGATCGCTTGAAAGTGTGGGATGA</gDNA_template>
            <first_frame> S  S  V  T  R  R  I  K  L  F  *  S  N  M  P  K  M  I  R  L  L  T  M  E  R  *  S  D  L  S  L  R  F  S  P  H  C  L  I  I  T  N  L  L  S  D  P  *  L  G  C  K  I  E  T  L  F  L  L  V  L  I  Q  * :   S  V  I  L  V  F  L  *  D  *  D  L  L  G  R  I  S  A  A  I  *  L  Q  G  V  G  S  A  L  K  F  M  C  A  Q  W  L  K  E  I  M  L  *  K  C  G  A  F  L  I  Q  I  Q  T  *  L  T  H  K  N  S  W  I  V  L  S  V  S  S  L  :  A  *  G  N  L  C  S  M  Y  S  K  M  E  I  V  I  L  R  W  H  W  *  L  M  I  A  *  K  C  G  M  </first_frame>
            <second_frame>  Q  A  L  P  G  G  *  N  Y  F  K  A  I  C  R  K  *  S  G  C  *  Q  W  K  G  D  Q  I  S  V  *  G  F  P  R  I  V  *  *  S  P  T  Y  C  Q  T  P  D  *  V  A  R  *  K  H  Y  S  Y  S  Y  *  S  N   : D  P  *  Y  *  C  S  C  E  I  E  T  C  L  G  G  S  P  Q  L  S  D  C  K  G  S  E  A  L  *  S  L  C  V  H  N  G  *  K  R  L  C  F  R  N  V  A  P  S  *  S  R  F  K  L  D  *  L  T  R  T  L  G  S  Y  C  L  C  Q  V  W :   L  E  E  I  F  V  Q  C  I  P  R  W  K  L  S  S  *  D  G  I  G  D  *  *  S  L  E  S  V  G  * </second_frame>
            <third_frame>   K  R  Y  Q  E  D  K  I  I  L  K  Q  Y  A  E  N  D  Q  V  V  D  N  G  K  V  I  R  S  Q  S  E  V  F  P  A  L  S  D  N  H  Q  P  I  V  R  P  L  I  R  L  Q  D  R  N  I  I  L  T  R  I  N  P  M  :  I  R  D  T  S  V  L  V  R  L  R  P  A  W  E  D  L  R  S  Y  L  T  A  R  G  R  K  R  F  E  V  Y  V  C  T  M  A  E  R  D  Y  A  L  E  M  W  R  L  L  D  P  D  S  N  L  I  N  S  Q  E  L  L  D  R  I  V  C  V  K  S   : G  L  R  K  S  L  F  N  V  F  Q  D  G  N  C  H  P  K  M  A  L  V  I  D  D  R  L  K  V  W  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0065H17.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107901" stop="107713"/>
                    <exon start="107450" stop="107240"/>
                    <exon start="107157" stop="107066"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRYQEDKIILKQYAENDQVVDNGKVIRSQSEVFPALSDNHQPIVRPLIRLQDRNIILTRINPMIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPDSNLINSQELLDRIVCVKSGLRKSLFNVFQDGNCHPKMALVIDDRLKVWD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 286 chains have been computed
$ 
$ memory statistics:
$ 933928 bytes spliced alignments in total
$ 137 spliced alignments have been stored
$ 6816 bytes was the average size of a spliced alignment
$ 32712 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1635 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 386 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:10:02
-->
