<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:57:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715943" ref_strand="+" ref_description="SGN-E715943 [FB15CG09]">
      <seq>gtccaaacacattcagttaagaaaggtgctggacaaaacagcggtgcaactaaaaatggaaaaacagaaaaccaagtggtggcaacaaaaaagagggaaaagaagaaaccccttcctagagaggaaattgcaaaagctagggaggagaagaggaaagcacttagggaagctacacgaaaagccacgatgaagaacaaatgaggtctggtgataagccgaagatattttaccagaggtgacatgagcgaacataaaacaagaaactctggtgattttgtgaaagctcacctcgcgtattattagcacctgccagctagttgtaatatttttgttattggttgatgactttgagatgaagagagctggaggtcgtgtatgattttgctttagaaaacaacttagggttcatggtttgcatgaatatgaatccaaaaattttgtcctatacttttaacctacttgggaatgagcaatgaaaattataaagggaaaagggtagtttgtattccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="4239" stop="3023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3939" g_stop="3800" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3799" i_stop="3693" i_length="107">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3692" g_stop="3324" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="509" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="523"/>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E715943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3939" e_stop="3800"/>
          <exon e_start="3692" e_stop="3324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCAAACACATTCAGTTAAGAAAGGTGCTGGACAAAACAGCGGTGCAACTAAAAATGGAAAAACAGAAAACCAAGTGGTGGCAACAAAAAAGAGGGAAAAGAAGAAACCCCTTCCTAGAGAGGAAATTGCAAAAGCTAGGTACTATTTGTAGTTTCACTATCACTAGTTGTTAAACAGTGATGTGCTATTGGAACAGAGTTAATTTCAGATAATATAACCTAGTATTGTCTTCAACATTTTTACAGGGAGGAGAAGAGGAAAGCACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</genome_strand>
        <mrna_strand>GTCCAAACACATTCAGTTAAGAAAGGTGCTGGACAAAACAGCGGTGCAACTAAAAATGGAAAAACAGAAAACCAAGTGGTGGCAACAAAAAAGAGGGAAAAGAAGAAACCCCTTCCTAGAGAGGAAATTGCAAAAGCTAG...........................................................................................................GGAGGAGAAGAGGAAAGCACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221952" ref_strand="+" ref_description="SGN-E221952 [cLEL-10-J14](-)">
      <seq>aattgcaaaagctagggagcagaataggaaagctacttagggaagctacacgaaaagccacgatgaagaacaaatgaggtctggtgataagccgaagatattttaccagaggtgacatgagcgaacataaaacaagaaactctggtgattttgtgaaagctcacctcgcgtattattagcacctgccagctagttgtaatatttttgttattggttgatgactttgagatgaagagagctggaggtcgtgtatgattttgctttagaaaacaacttagggttcatggtttgcatgaatatgaatccaaaaattttgtcctatacttttaaccaacttgggaatgagcaatggaaattataaaggcaaaagggtagtttgtattccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="3994" stop="3023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3814" g_stop="3800" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3799" i_stop="3693" i_length="107">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3692" g_stop="3324" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="385" r_length="370" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="404"/>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E221952" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3814" e_stop="3800"/>
          <exon e_start="3692" e_stop="3324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAAAAGCTAGGTACTATTTGTAGTTTCACTATCACTAGTTGTTAAACAGTGATGTGCTATTGGAACAGAGTTAATTTCAGATAATATAACCTAGTATTGTCTTCAACATTTTTACAGGGAGGAGAAGAGGAAAGC-ACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</genome_strand>
        <mrna_strand>AATTGCAAAAGCTAG...........................................................................................................GGAGCAGAATAGGAAAGCTACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCAACTTGGGAATGAGCAATGGAAATTATAAAGGCAAAAGGGTAGTTTGTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221703" ref_strand="+" ref_description="SGN-E221703 [cLEL-10-J13](-)">
      <seq>aaaagcctcgatgaagaacaaatgaggtctggtgataagccgaagatattttaccagaggtgacatgagcgaacataaaacaagaaactctggtgattttgtgaaagctcacctcgcgtattattagcacctgccagctagttgtaatatttttgttattggttgatgactttgagatgaagagagctggaggtcgtgtatgattttgctttagaaaacaacttagggttcatggtttgcatgaatatgaatccaaaaattttgtcctatacttttaacctacttgggaatgagcaatgaaaattataaagggaaaagggtagtttgtattccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="3956" stop="3023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3656" g_stop="3324" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="334" polyA_stop="352"/>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E221703" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3656" e_stop="3324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</genome_strand>
        <mrna_strand>AAAAGCCTCGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221542" ref_strand="+" ref_description="SGN-E221542 [cLEL-10-J14](-)">
      <seq>gatgaagaacaaatgaggtctggtgataagccgaagatattttaccagaggtgacatgagcgaacataaaacaagaaactctggtgattttgtgaaagctcacctcgcgtattattagcacctgccagctagttgtaatatttttgttattggttgatgactttgagatgaagagagctggaggtcgtgtatgattttgctttagaaaacaacttagggttcatggtttgcatgaatatgaatccaaaaattttgtcctatacttttaacctacttgggaatgagcaatgagaattataaagggaaaagggtagtttgtattcccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="3947" stop="3024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3647" g_stop="3324" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="343"/>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E221542" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3647" e_stop="3324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</genome_strand>
        <mrna_strand>GATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAGAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243394" ref_strand="+" ref_description="SGN-E243394 [cLED-34-E7]">
      <seq>aaaaatagtggtattatttatgcaaatgagatgaaggagtcgagacttaaatcactcactgctaacttacatcgcatgggggtaacaaacaccattgtctgtaactatgatggaagagagctacctaaagtcttgggtcagaacactgccgatagaattttgctggatgctccctgcagtggcactggggtgatttccaaggatgagtctgttaaaacttccaaaactgctgcagatatacaaaattgctcacacctgcagaaggaactgatacttgcagcaattgacatggtcgatgccaactcaaaatcgggtggatacatagtgtattctacctgctccatcatggttgatgagaatgaagcagttatagattatgcactcaagaagagagatgttaaactcgtgccttgtggacttgattttggcaggcccggatttgttcgctttaggcagcaccgtttccacacatcgttggacaagacacggcgattctatcctcatgtgcacaacatggatggattctttgtggcaaagttgaaaaagatgagcaattccaagtctgctgcaaaagcgtcagctcagtccgaagaaatagaagatgctgataccattgagagcagtgaccagcagaatgctgaagaggatgatgacaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="6598" stop="3718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6290" g_stop="6181" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="120" r_length="110" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6180" i_stop="5916" i_length="265">
            <donor d_prob="0.538" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5915" g_stop="5847" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="189" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5846" i_stop="5774" i_length="73">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5773" g_stop="5699" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="264" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5698" i_stop="5185" i_length="514">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5184" g_stop="5092" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="357" r_length="93" r_score="0.914"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5091" i_stop="5000" i_length="92">
            <donor d_prob="0.960" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4999" g_stop="4920" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="437" r_length="80" r_score="0.900"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4919" i_stop="4845" i_length="75">
            <donor d_prob="0.981" d_score="0.86"/>
            <acceptor a_prob="0.912" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4844" g_stop="4745" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="537" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4744" i_stop="4141" i_length="604">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.929" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4140" g_stop="4018" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="660" r_length="123" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E243394" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6290" e_stop="6181"/>
          <exon e_start="5915" e_stop="5847"/>
          <exon e_start="5773" e_stop="5699"/>
          <exon e_start="5184" e_stop="5092"/>
          <exon e_start="4999" e_stop="4920"/>
          <exon e_start="4844" e_stop="4745"/>
          <exon e_start="4140" e_stop="4018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTATTTATGCGAATGAGATGAAGGAGTCCAGACTTAAATCTCTCACTGCTAATTTACATCGCATGGGGGTAACAAACACCATTATCTGCAACTATGATGGAAGAGAGGTTTGAGTTGGACTATTTTGCAATCTTCCCTTTAGAACTAGCACAATTATTTTTTTTGTATTTTGCGGGCAATGTCCTATTTTTTTCTCCATCATGAGCACTTATGCTTGTTGGCTTAAGTATGTCTTTACTAATTTCATTAAGCTACAGGCTTTGATCCGACAAGATTTCGTTGTTCTACTGTTTCTATTTCCTAGTTTACATTCTTAATGGTGATATGGACTTAGTCCTCTGATCTAATACCTTGTTTGTGGGATCATTTCAGTTGCCTAAAGTTTTGGGTCAGAGCACTGCTGATAGGATTTTGCTGGATGCTCCCTGCAGTGGCACTGGGGTATGTGGTAATCTTTTATGTATATGCTTGGCTTGGATCTTGTTTAAACCAATGAATTATGTTCTTTGTGCAGGTAATCTCCAAGGATGAGTCTGTTAAAACTTCCAAAACTGCACCAGATATACAAAATTGCTCACAACTGCAGAAGGTATATATGTTAGATGTGTAAGTTTGTTGATTTGTGTCATCTATATTTATACACTTGCAACGATTTGCGCTGTGGGAGGATATCATGAAAACTTTCCATGAATTAGTTGGGTGCTTAGAGTTTGTCATGATTCATAACAGAACACCCCAGAGTATATTGCAAGCATCTGACTGTTCGAAAATACTGGTTTCTGTAAGTCTGCATCCAGGAAGAGATAAAGCTGCAAAAAGAATTGAACTTTATCGTATTTGTTTCTAATGATTGATTCCATTGAACATAATTGTTGTATAGGAGGACAAATTTTACATTTCTAGTTGTCTTATCGCCTTTTTTTTTGTGTTGTTATATTTGTCCTCCCAAATCATGAGGGTGTTGGTGATTGTATTGGAAGCTTCATGTCCCTCCTTCAGCAGTGTTAATTTTGCTCCATGATGTTTCTTTTATCACATATTCCCCATTCACATGTTGTTGTGGCCTTTGAGGAACCTGTTTCATCGTCAATTTTGATTTGCAGGAACTAATACTTGCAGCAATTGACATGGTTGATGCCAACTCAAAAACAGGTGGATACATTGTGTATTCGACCTGCTCCATTATGGTTGAAGAGGTATCTTTCTAAACATATATTTCCAAATGAATCCTCAAAAAAACTGATGCTTTTCAAAGTATTCTACTCATTTGTCTAATTTGGAACTGCAGAATGAAGCGGTTATAGATTATGCACTCAAGAAGAGAGATGTTAAGCTTGTTCCATGCGGACTTGATTTTGGGAGGCCTGGGTATATTTTTTAGTGTTTGCGCTTTTACTCGAAAGGTTACCTAATTCTACTACTAATTAATGCTACCTCTCCCAGATTTATTCGCTTTAGGCAGCACCGTTTCCACACATCTTTGGACAAGACAAGGCGATTCTATCCTCATGTGCACAACATGGATGGATTTTTTGTAGCCAAGGTATGCCTTATTATTTGGTAATAATTTGTGCTGTCAATAGCTGCTTAGCAAATGACTGTAAATTACAAGGATGAGAAGTATCAAGTTGAGAGAGCTCGAACGGAGGCTTAAGAGTCCTACTTATGATGGTCATTATTCTTAAAATTGATTACAGTAAAGCGTGAAGTACAAAATGATCTATCCTGTTCTTTTATTCCGTTCGAAAAAGTCACATTAGTTATTCTGACTTAGCATATCATCGAAATATCCTCCGAAAGTCACTTTTTTTTTTCTCAAAATGATTTTTCGTTTTAGTAATTGCTTGTTTTTTAAAAAAAATAATTTTGGGCATAATAAATACTATTCAACCCTATACACATGAGGTTTTGTGTGCTTCTCTTCAGTTCTCATGCTTCTGCACTTGTGTAGAAATCTAGCTTCTTCATGTCAGTCAAACAAACATTTCATCTTTTCATTAAGGTTTCTGGTACTCAAAAAATGAATTGGGAGTGGCATATGTGGTTGTAAAAACAAATGAATGATTTTAAGCATATTTCTTCTTTGAAGTTGCTGCAAGTTTGTTTCGGTAAAACATTTGGCCTCGTATGTGTTGTTTCTTTTCCAGTTGAAAAAGATGAGCAATTCCAAGTCTGCTGCAAACTCGTTGGCTCAGTCTGAAGAAGTACAAGGTGCTGAAAGCATTGAGAACAGTGAGCAGCAGGATTCTGAAGAGGATGATGACAAGAAT</genome_strand>
        <mrna_strand>GTATTATTTATGCAAATGAGATGAAGGAGTCGAGACTTAAATCACTCACTGCTAACTTACATCGCATGGGGGTAACAAACACCATTGTCTGTAACTATGATGGAAGAGAG.........................................................................................................................................................................................................................................................................CTACCTAAAGTCTTGGGTCAGAACACTGCCGATAGAATTTTGCTGGATGCTCCCTGCAGTGGCACTGGG.........................................................................GTGATTTCCAAGGATGAGTCTGTTAAAACTTCCAAAACTGCTGCAGATATACAAAATTGCTCACACCTGCAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGATACTTGCAGCAATTGACATGGTCGATGCCAACTCAAAATCGGGTGGATACATAGTGTATTCTACCTGCTCCATCATGGTTGATGAG............................................................................................AATGAAGCAGTTATAGATTATGCACTCAAGAAGAGAGATGTTAAACTCGTGCCTTGTGGACTTGATTTTGGCAGGCCCGG...........................................................................ATTTGTTCGCTTTAGGCAGCACCGTTTCCACACATCGTTGGACAAGACACGGCGATTCTATCCTCATGTGCACAACATGGATGGATTCTTTGTGGCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAAGATGAGCAATTCCAAGTCTGCTGCAAAAGCGTCAGCTCAGTCCGAAGAAATAGAAGATGCTGATACCATTGAGAGCAGTGACCAGCAGAATGCTGAAGAGGATGATGACAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235468" ref_strand="+" ref_description="SGN-E235468 [cLED-11-M23]">
      <seq>aaaaatagtggtattatttatgcaaatgagatgaaggagtcgagacttaaatcactcactgctaacttacatcgcatgggggtaacaaacaccattgtctgtaactatgatggaagagagctacctaaagtcttgggtcagaacactgccgatagaattttgctggatgctccctgcagtggcactggggtgatttccaaggatgagtctgttaaaacttccaaaactgctgcagatatacaaaattgctcacacctgcagaaggaactgatacttgcagcaattgacatggtcgatgccaactcaaaatcgggtggatacatagtgtattctacctgctccatcatggttgatgagaatgaagcagttatagattatgcactcaagaagagagatgttaaactcgtgccttgtggacttgattttggcaggcccggatttgttcgctttaggcagcaccgtttccacacatcgttggacaagacacggcgattctatcctcatgtgcacaacatggatggattctttgtggcaaagttgaaaaagatgagcaattccaagtctgctgcaaaagcgtcagcttagtccgaagaaatagaagatgctgataccattgagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="6598" stop="3759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6290" g_stop="6181" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="120" r_length="110" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6180" i_stop="5916" i_length="265">
            <donor d_prob="0.538" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5915" g_stop="5847" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="189" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5846" i_stop="5774" i_length="73">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5773" g_stop="5699" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="264" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5698" i_stop="5185" i_length="514">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5184" g_stop="5092" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="357" r_length="93" r_score="0.914"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5091" i_stop="5000" i_length="92">
            <donor d_prob="0.960" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4999" g_stop="4920" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="437" r_length="80" r_score="0.900"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4919" i_stop="4845" i_length="75">
            <donor d_prob="0.981" d_score="0.86"/>
            <acceptor a_prob="0.912" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4844" g_stop="4745" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="537" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4744" i_stop="4141" i_length="604">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.929" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4140" g_stop="4058" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="620" r_length="83" r_score="0.855"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E235468" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6290" e_stop="6181"/>
          <exon e_start="5915" e_stop="5847"/>
          <exon e_start="5773" e_stop="5699"/>
          <exon e_start="5184" e_stop="5092"/>
          <exon e_start="4999" e_stop="4920"/>
          <exon e_start="4844" e_stop="4745"/>
          <exon e_start="4140" e_stop="4058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTATTTATGCGAATGAGATGAAGGAGTCCAGACTTAAATCTCTCACTGCTAATTTACATCGCATGGGGGTAACAAACACCATTATCTGCAACTATGATGGAAGAGAGGTTTGAGTTGGACTATTTTGCAATCTTCCCTTTAGAACTAGCACAATTATTTTTTTTGTATTTTGCGGGCAATGTCCTATTTTTTTCTCCATCATGAGCACTTATGCTTGTTGGCTTAAGTATGTCTTTACTAATTTCATTAAGCTACAGGCTTTGATCCGACAAGATTTCGTTGTTCTACTGTTTCTATTTCCTAGTTTACATTCTTAATGGTGATATGGACTTAGTCCTCTGATCTAATACCTTGTTTGTGGGATCATTTCAGTTGCCTAAAGTTTTGGGTCAGAGCACTGCTGATAGGATTTTGCTGGATGCTCCCTGCAGTGGCACTGGGGTATGTGGTAATCTTTTATGTATATGCTTGGCTTGGATCTTGTTTAAACCAATGAATTATGTTCTTTGTGCAGGTAATCTCCAAGGATGAGTCTGTTAAAACTTCCAAAACTGCACCAGATATACAAAATTGCTCACAACTGCAGAAGGTATATATGTTAGATGTGTAAGTTTGTTGATTTGTGTCATCTATATTTATACACTTGCAACGATTTGCGCTGTGGGAGGATATCATGAAAACTTTCCATGAATTAGTTGGGTGCTTAGAGTTTGTCATGATTCATAACAGAACACCCCAGAGTATATTGCAAGCATCTGACTGTTCGAAAATACTGGTTTCTGTAAGTCTGCATCCAGGAAGAGATAAAGCTGCAAAAAGAATTGAACTTTATCGTATTTGTTTCTAATGATTGATTCCATTGAACATAATTGTTGTATAGGAGGACAAATTTTACATTTCTAGTTGTCTTATCGCCTTTTTTTTTGTGTTGTTATATTTGTCCTCCCAAATCATGAGGGTGTTGGTGATTGTATTGGAAGCTTCATGTCCCTCCTTCAGCAGTGTTAATTTTGCTCCATGATGTTTCTTTTATCACATATTCCCCATTCACATGTTGTTGTGGCCTTTGAGGAACCTGTTTCATCGTCAATTTTGATTTGCAGGAACTAATACTTGCAGCAATTGACATGGTTGATGCCAACTCAAAAACAGGTGGATACATTGTGTATTCGACCTGCTCCATTATGGTTGAAGAGGTATCTTTCTAAACATATATTTCCAAATGAATCCTCAAAAAAACTGATGCTTTTCAAAGTATTCTACTCATTTGTCTAATTTGGAACTGCAGAATGAAGCGGTTATAGATTATGCACTCAAGAAGAGAGATGTTAAGCTTGTTCCATGCGGACTTGATTTTGGGAGGCCTGGGTATATTTTTTAGTGTTTGCGCTTTTACTCGAAAGGTTACCTAATTCTACTACTAATTAATGCTACCTCTCCCAGATTTATTCGCTTTAGGCAGCACCGTTTCCACACATCTTTGGACAAGACAAGGCGATTCTATCCTCATGTGCACAACATGGATGGATTTTTTGTAGCCAAGGTATGCCTTATTATTTGGTAATAATTTGTGCTGTCAATAGCTGCTTAGCAAATGACTGTAAATTACAAGGATGAGAAGTATCAAGTTGAGAGAGCTCGAACGGAGGCTTAAGAGTCCTACTTATGATGGTCATTATTCTTAAAATTGATTACAGTAAAGCGTGAAGTACAAAATGATCTATCCTGTTCTTTTATTCCGTTCGAAAAAGTCACATTAGTTATTCTGACTTAGCATATCATCGAAATATCCTCCGAAAGTCACTTTTTTTTTTCTCAAAATGATTTTTCGTTTTAGTAATTGCTTGTTTTTTAAAAAAAATAATTTTGGGCATAATAAATACTATTCAACCCTATACACATGAGGTTTTGTGTGCTTCTCTTCAGTTCTCATGCTTCTGCACTTGTGTAGAAATCTAGCTTCTTCATGTCAGTCAAACAAACATTTCATCTTTTCATTAAGGTTTCTGGTACTCAAAAAATGAATTGGGAGTGGCATATGTGGTTGTAAAAACAAATGAATGATTTTAAGCATATTTCTTCTTTGAAGTTGCTGCAAGTTTGTTTCGGTAAAACATTTGGCCTCGTATGTGTTGTTTCTTTTCCAGTTGAAAAAGATGAGCAATTCCAAGTCTGCTGCAAACTCGTTGGCTCAGTCTGAAGAAGTACAAGGTGCTGAAAGCATTGAGAA</genome_strand>
        <mrna_strand>GTATTATTTATGCAAATGAGATGAAGGAGTCGAGACTTAAATCACTCACTGCTAACTTACATCGCATGGGGGTAACAAACACCATTGTCTGTAACTATGATGGAAGAGAG.........................................................................................................................................................................................................................................................................CTACCTAAAGTCTTGGGTCAGAACACTGCCGATAGAATTTTGCTGGATGCTCCCTGCAGTGGCACTGGG.........................................................................GTGATTTCCAAGGATGAGTCTGTTAAAACTTCCAAAACTGCTGCAGATATACAAAATTGCTCACACCTGCAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGATACTTGCAGCAATTGACATGGTCGATGCCAACTCAAAATCGGGTGGATACATAGTGTATTCTACCTGCTCCATCATGGTTGATGAG............................................................................................AATGAAGCAGTTATAGATTATGCACTCAAGAAGAGAGATGTTAAACTCGTGCCTTGTGGACTTGATTTTGGCAGGCCCGG...........................................................................ATTTGTTCGCTTTAGGCAGCACCGTTTCCACACATCGTTGGACAAGACACGGCGATTCTATCCTCATGTGCACAACATGGATGGATTCTTTGTGGCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAAGATGAGCAATTCCAAGTCTGCTGCAAAAGCGTCAGCTTAGTCCGAAGAAATAGAAGATGCTGATACCATTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244427" ref_strand="+" ref_description="SGN-E244427 [cLEF-3-O17]">
      <seq>tcgcatgggggtaacaaacaccattggctgtaactatgatggaagagagctacctaaagtcttgggtcagaacactgccgatagaattttgctggatgctccctgcagtggcactggggtgatttccaaggatgagtctgttaaaacttccaaaactgctgcagatatacaaaattgctcacacctgcagaaggaactgatacttgcagcaattgacatggtcgatgccaactcaaaatcgggtggatacatagtgtattctacctgctccatcatggttgatgagaatgaagcagttatagattatgcactcaagaagagagatgttaaactcgtgccttgtggacttgattttggcaggcccggatttgttcgctttaggcagcaccgtttccacacatcgttggacaagacacggcgattctatcctcatgtgcacaacatggatggattctttgtggcaaagttgaaaaagatgagcaattccaagtctgctgcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="6529" stop="3806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6229" g_stop="6181" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6180" i_stop="5916" i_length="265">
            <donor d_prob="0.538" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5915" g_stop="5847" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="118" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5846" i_stop="5774" i_length="73">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5773" g_stop="5699" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="193" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5698" i_stop="5185" i_length="514">
            <donor d_prob="0.974" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5184" g_stop="5092" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="286" r_length="93" r_score="0.914"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5091" i_stop="5000" i_length="92">
            <donor d_prob="0.960" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4999" g_stop="4920" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="366" r_length="80" r_score="0.900"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4919" i_stop="4845" i_length="75">
            <donor d_prob="0.981" d_score="0.86"/>
            <acceptor a_prob="0.912" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4844" g_stop="4745" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="466" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4744" i_stop="4141" i_length="604">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4140" g_stop="4104" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="503" r_length="37" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E244427" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6229" e_stop="6181"/>
          <exon e_start="5915" e_stop="5847"/>
          <exon e_start="5773" e_stop="5699"/>
          <exon e_start="5184" e_stop="5092"/>
          <exon e_start="4999" e_stop="4920"/>
          <exon e_start="4844" e_stop="4745"/>
          <exon e_start="4140" e_stop="4104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCATGGGGGTAACAAACACCATTATCTGCAACTATGATGGAAGAGAGGTTTGAGTTGGACTATTTTGCAATCTTCCCTTTAGAACTAGCACAATTATTTTTTTTGTATTTTGCGGGCAATGTCCTATTTTTTTCTCCATCATGAGCACTTATGCTTGTTGGCTTAAGTATGTCTTTACTAATTTCATTAAGCTACAGGCTTTGATCCGACAAGATTTCGTTGTTCTACTGTTTCTATTTCCTAGTTTACATTCTTAATGGTGATATGGACTTAGTCCTCTGATCTAATACCTTGTTTGTGGGATCATTTCAGTTGCCTAAAGTTTTGGGTCAGAGCACTGCTGATAGGATTTTGCTGGATGCTCCCTGCAGTGGCACTGGGGTATGTGGTAATCTTTTATGTATATGCTTGGCTTGGATCTTGTTTAAACCAATGAATTATGTTCTTTGTGCAGGTAATCTCCAAGGATGAGTCTGTTAAAACTTCCAAAACTGCACCAGATATACAAAATTGCTCACAACTGCAGAAGGTATATATGTTAGATGTGTAAGTTTGTTGATTTGTGTCATCTATATTTATACACTTGCAACGATTTGCGCTGTGGGAGGATATCATGAAAACTTTCCATGAATTAGTTGGGTGCTTAGAGTTTGTCATGATTCATAACAGAACACCCCAGAGTATATTGCAAGCATCTGACTGTTCGAAAATACTGGTTTCTGTAAGTCTGCATCCAGGAAGAGATAAAGCTGCAAAAAGAATTGAACTTTATCGTATTTGTTTCTAATGATTGATTCCATTGAACATAATTGTTGTATAGGAGGACAAATTTTACATTTCTAGTTGTCTTATCGCCTTTTTTTTTGTGTTGTTATATTTGTCCTCCCAAATCATGAGGGTGTTGGTGATTGTATTGGAAGCTTCATGTCCCTCCTTCAGCAGTGTTAATTTTGCTCCATGATGTTTCTTTTATCACATATTCCCCATTCACATGTTGTTGTGGCCTTTGAGGAACCTGTTTCATCGTCAATTTTGATTTGCAGGAACTAATACTTGCAGCAATTGACATGGTTGATGCCAACTCAAAAACAGGTGGATACATTGTGTATTCGACCTGCTCCATTATGGTTGAAGAGGTATCTTTCTAAACATATATTTCCAAATGAATCCTCAAAAAAACTGATGCTTTTCAAAGTATTCTACTCATTTGTCTAATTTGGAACTGCAGAATGAAGCGGTTATAGATTATGCACTCAAGAAGAGAGATGTTAAGCTTGTTCCATGCGGACTTGATTTTGGGAGGCCTGGGTATATTTTTTAGTGTTTGCGCTTTTACTCGAAAGGTTACCTAATTCTACTACTAATTAATGCTACCTCTCCCAGATTTATTCGCTTTAGGCAGCACCGTTTCCACACATCTTTGGACAAGACAAGGCGATTCTATCCTCATGTGCACAACATGGATGGATTTTTTGTAGCCAAGGTATGCCTTATTATTTGGTAATAATTTGTGCTGTCAATAGCTGCTTAGCAAATGACTGTAAATTACAAGGATGAGAAGTATCAAGTTGAGAGAGCTCGAACGGAGGCTTAAGAGTCCTACTTATGATGGTCATTATTCTTAAAATTGATTACAGTAAAGCGTGAAGTACAAAATGATCTATCCTGTTCTTTTATTCCGTTCGAAAAAGTCACATTAGTTATTCTGACTTAGCATATCATCGAAATATCCTCCGAAAGTCACTTTTTTTTTTCTCAAAATGATTTTTCGTTTTAGTAATTGCTTGTTTTTTAAAAAAAATAATTTTGGGCATAATAAATACTATTCAACCCTATACACATGAGGTTTTGTGTGCTTCTCTTCAGTTCTCATGCTTCTGCACTTGTGTAGAAATCTAGCTTCTTCATGTCAGTCAAACAAACATTTCATCTTTTCATTAAGGTTTCTGGTACTCAAAAAATGAATTGGGAGTGGCATATGTGGTTGTAAAAACAAATGAATGATTTTAAGCATATTTCTTCTTTGAAGTTGCTGCAAGTTTGTTTCGGTAAAACATTTGGCCTCGTATGTGTTGTTTCTTTTCCAGTTGAAAAAGATGAGCAATTCCAAGTCTGCTGCAAACT</genome_strand>
        <mrna_strand>TCGCATGGGGGTAACAAACACCATTGGCTGTAACTATGATGGAAGAGAG.........................................................................................................................................................................................................................................................................CTACCTAAAGTCTTGGGTCAGAACACTGCCGATAGAATTTTGCTGGATGCTCCCTGCAGTGGCACTGGG.........................................................................GTGATTTCCAAGGATGAGTCTGTTAAAACTTCCAAAACTGCTGCAGATATACAAAATTGCTCACACCTGCAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGATACTTGCAGCAATTGACATGGTCGATGCCAACTCAAAATCGGGTGGATACATAGTGTATTCTACCTGCTCCATCATGGTTGATGAG............................................................................................AATGAAGCAGTTATAGATTATGCACTCAAGAAGAGAGATGTTAAACTCGTGCCTTGTGGACTTGATTTTGGCAGGCCCGG...........................................................................ATTTGTTCGCTTTAGGCAGCACCGTTTCCACACATCGTTGGACAAGACACGGCGATTCTATCCTCATGTGCACAACATGGATGGATTCTTTGTGGCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAAGATGAGCAATTCCAAGTCTGCTGCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336914" ref_strand="+" ref_description="SGN-E336914 [cTOE-5-J18]">
      <seq>taggattttgctggatgctccctgcagtggcactggggtaatctccaaggatgagtctgttaaaacttccaaaactgcaccagatatacaaaattgctcacaactgcagaaggaactaatacttgcagcaattgacatggttgatgccaactcaaaaacaggtggatacattgtgtattcgacctgctccattatggttgaagagaatgaagcggttatagattatgcactcaagaagagagatgttaagcttgttccatgcggacttgattttgggaggcctggatttattcgctttaggcagcaccgtttccacacatctttggacaagacaaggcgattctatcctcatgtgcacaacatggatggatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="6183" stop="4454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5883" g_stop="5847" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5846" i_stop="5774" i_length="73">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5773" g_stop="5699" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="112" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5698" i_stop="5185" i_length="514">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5184" g_stop="5092" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="205" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5091" i_stop="5000" i_length="92">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4999" g_stop="4920" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="285" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4919" i_stop="4845" i_length="75">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4844" g_stop="4754" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="376" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E336914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5883" e_stop="5847"/>
          <exon e_start="5773" e_stop="5699"/>
          <exon e_start="5184" e_stop="5092"/>
          <exon e_start="4999" e_stop="4920"/>
          <exon e_start="4844" e_stop="4754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGATTTTGCTGGATGCTCCCTGCAGTGGCACTGGGGTATGTGGTAATCTTTTATGTATATGCTTGGCTTGGATCTTGTTTAAACCAATGAATTATGTTCTTTGTGCAGGTAATCTCCAAGGATGAGTCTGTTAAAACTTCCAAAACTGCACCAGATATACAAAATTGCTCACAACTGCAGAAGGTATATATGTTAGATGTGTAAGTTTGTTGATTTGTGTCATCTATATTTATACACTTGCAACGATTTGCGCTGTGGGAGGATATCATGAAAACTTTCCATGAATTAGTTGGGTGCTTAGAGTTTGTCATGATTCATAACAGAACACCCCAGAGTATATTGCAAGCATCTGACTGTTCGAAAATACTGGTTTCTGTAAGTCTGCATCCAGGAAGAGATAAAGCTGCAAAAAGAATTGAACTTTATCGTATTTGTTTCTAATGATTGATTCCATTGAACATAATTGTTGTATAGGAGGACAAATTTTACATTTCTAGTTGTCTTATCGCCTTTTTTTTTGTGTTGTTATATTTGTCCTCCCAAATCATGAGGGTGTTGGTGATTGTATTGGAAGCTTCATGTCCCTCCTTCAGCAGTGTTAATTTTGCTCCATGATGTTTCTTTTATCACATATTCCCCATTCACATGTTGTTGTGGCCTTTGAGGAACCTGTTTCATCGTCAATTTTGATTTGCAGGAACTAATACTTGCAGCAATTGACATGGTTGATGCCAACTCAAAAACAGGTGGATACATTGTGTATTCGACCTGCTCCATTATGGTTGAAGAGGTATCTTTCTAAACATATATTTCCAAATGAATCCTCAAAAAAACTGATGCTTTTCAAAGTATTCTACTCATTTGTCTAATTTGGAACTGCAGAATGAAGCGGTTATAGATTATGCACTCAAGAAGAGAGATGTTAAGCTTGTTCCATGCGGACTTGATTTTGGGAGGCCTGGGTATATTTTTTAGTGTTTGCGCTTTTACTCGAAAGGTTACCTAATTCTACTACTAATTAATGCTACCTCTCCCAGATTTATTCGCTTTAGGCAGCACCGTTTCCACACATCTTTGGACAAGACAAGGCGATTCTATCCTCATGTGCACAACATGGATGGATTTTTT</genome_strand>
        <mrna_strand>TAGGATTTTGCTGGATGCTCCCTGCAGTGGCACTGGG.........................................................................GTAATCTCCAAGGATGAGTCTGTTAAAACTTCCAAAACTGCACCAGATATACAAAATTGCTCACAACTGCAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTAATACTTGCAGCAATTGACATGGTTGATGCCAACTCAAAAACAGGTGGATACATTGTGTATTCGACCTGCTCCATTATGGTTGAAGAG............................................................................................AATGAAGCGGTTATAGATTATGCACTCAAGAAGAGAGATGTTAAGCTTGTTCCATGCGGACTTGATTTTGGGAGGCCTGG...........................................................................ATTTATTCGCTTTAGGCAGCACCGTTTCCACACATCTTTGGACAAGACAAGGCGATTCTATCCTCATGTGCACAACATGGATGGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335775" ref_strand="+" ref_description="SGN-E335775 [cTOE-6-A7]">
      <seq>atactcgcagacgggatttagctggcgttcttcttaacagaggtgtcaatttggacccattaagcaaatggtcaaaggttggattagttgtatatgattctcaagttccagttggtgccacccctgagtatatggctggtcattacatgctccaaagtgcaagctcttttctgcctgtaatggcccttgctcctcaagagaatgaacgtgtcgttgatatggctgctgctcctggaggcaaaacaacttatgttgctgcactgatgaaaaatagtggtattatttatgcgaatgagatgaaggagtccagacttaaatctctcactgctaatttacatcgcatgggggtaacaaacaccattatctgcaactatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="8079" stop="5890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7779" g_stop="7703" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7702" i_stop="7574" i_length="129">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7573" g_stop="7502" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="149" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7501" i_stop="7411" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7410" g_stop="7337" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="223" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7336" i_stop="6890" i_length="447">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6889" g_stop="6837" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="276" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6836" i_stop="6291" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6290" g_stop="6190" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="377" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E335775" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7779" e_stop="7703"/>
          <exon e_start="7573" e_stop="7502"/>
          <exon e_start="7410" e_stop="7337"/>
          <exon e_start="6889" e_stop="6837"/>
          <exon e_start="6290" e_stop="6190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTCGCAGACGGGATTTAGCTGGCGTTCTTCTTAACAGAGGTGTCAATTTGGACCCATTAAGCAAATGGTCAAAGGTACAAATACAAAGATGAAGTGTGATTTCTTTGGATTAACCCATTATTTTGGTAACAATTTGAATCTGTTATTTCTCAGTTTCATATGTATCCTTACTTATTTCAGCATATGCATTTATGACTTTGTAGGTTGGATTAGTTGTATATGATTCTCAAGTTCCAGTTGGTGCCACCCCTGAGTATATGGCTGGTCATTACATGGTAACCTGACTTATAACTAACTTGCTTACAAGATATCTTTGCTCTTAATATGCAACTGTTATGCTTATTTCTAATAATAACTTTCTTACAGCTCCAAAGTGCAAGCTCTTTTCTGCCTGTAATGGCCCTTGCTCCTCAGGAGAATGAACGTGTCGTTGATATGGCGTAAGTAAATAACTTAGTTTCTAAATAATGTTAGCTTCAATTGTCAATTATTGAAGTTCCACCTATTGAGTTAGTTCTTAATCGATATTGTTTTCAGAATTATTATCATTTCATTTTCTTGTATGTATTGGTAAGAATTAACGAGTTTGATTGCTGAAAGAGTTGTCTAGTCCATACTTAGATAGTCTAGGATAAAGCTAATCGGAAAAAAAAGCTTCTGCTTTTCCTCTCTCACTTTTAATTTCTTCTTTCTTTCTTTAAATCAGCAGCTTTGTCTTGGATATAATTTTGTCCGTCTTAGGTTCAAGTTATGCACCTAATATCTTTTCTTTTGGGAGGAAAGCTAAAATAATTTCTGCCATCTTCTTACTAGTTAGCTCAGTTAGTAGAAAAGTGAAATTTTTGTTAGCTTTTGTTCTCCTAAAGTGGGTAACTTTCATGGTGTAGTGCTGCTCCTGGAGGCAAAACAACTTATGTTGCTGCACTGATGAAAAATAGTGGTATGTATTCATTGTGAAGTTAATCGTGTTGTAAATGTTCTTGTGAATGAATCCATTTTATCCACAATGCATCCATACTTTCTGGATACAGAAAGGAGAATGAATTGAATACATGTAGCTGCCCTGGTGTCAGAATTGATTATCTCCTTTTCCTTGTAAAATAATTTATTGTTTTCCATTTCTTGCCCTGCTAATTTCTAATGCAGTTTACAAAAATATACTGGATGTTTTCGTTCTATTTTACTTTTCGCTCATGTACACCCTTCTTGGTAAAAAAAGATAGTACTTCGTAAATAATAGCCTGCATTAGCAATCTGTTTGCTTCCTCCAGTTGTCATTCCTGATGTGTCTTATATACTTACTACTGTTTGTCCTAAGATTTTGTGACATATTAATGTTTACCATGGTATTTTTCTAATTCTCCTTGCTCTGGTTCTGCTTTTGAAGTTACTGTAAATAATGCTGTCTTCCAGATTAGTGCTTAATAGCATTTGCCATTTCAATCATTGTCTGAATGACACTGACATATTTTACCTTGATAACTAGGTATTATTTATGCGAATGAGATGAAGGAGTCCAGACTTAAATCTCTCACTGCTAATTTACATCGCATGGGGGTAACAAACACCATTATCTGCAACTATGAT</genome_strand>
        <mrna_strand>ATACTCGCAGACGGGATTTAGCTGGCGTTCTTCTTAACAGAGGTGTCAATTTGGACCCATTAAGCAAATGGTCAAAG.................................................................................................................................GTTGGATTAGTTGTATATGATTCTCAAGTTCCAGTTGGTGCCACCCCTGAGTATATGGCTGGTCATTACATG...........................................................................................CTCCAAAGTGCAAGCTCTTTTCTGCCTGTAATGGCCCTTGCTCCTCAAGAGAATGAACGTGTCGTTGATATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTCCTGGAGGCAAAACAACTTATGTTGCTGCACTGATGAAAAATAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTATTTATGCGAATGAGATGAAGGAGTCCAGACTTAAATCTCTCACTGCTAATTTACATCGCATGGGGGTAACAAACACCATTATCTGCAACTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317359" ref_strand="+" ref_description="SGN-E317359 [cTOA-28-A8]">
      <seq>acacatcataatctccaaagacctaaagatttacctaaatttgagatagaaaaattgtaaaaatcttttgttcagtgactctgtatgtgtgataacaattattaacaatgaagaaatgtgagttgtgcagttccatagcaagagtttattgtgaatcagatcaagccagtctttgttgggattgtgatgccagagttcacacagccaatttccttgtagctaaacattcaaggattcttctctgtaattcttgccaatcacttaccccatggactggctctggctctaagcttggtcccactgtttctgtttgccagaaatgttttcacagaaataataatgatggcgcagatcaacatcttaatgatcataatgatacggaagaagaagaagatgatgatgatgatacggaagaagacgaagatgatggaagcagtgatggtgataatcaagttgttcctttatcttcttcaacttcagatcaacctaatcctccctcattgacttcaagctcttctagtagtgaagattccactaacagatttaacagaagaagtataattggattttcacctaacagaacagaggaaaatatccaatcccattattgtggcattacaagacctaaagagaagatagaaaggagttcatggagatggagataatcgggatatttacagctcaaaagctaattctgttatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="17584" stop="16085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17284" g_stop="16674" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16673" i_stop="16478" i_length="196">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16477" g_stop="16385" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="704" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E317359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17284" e_stop="16674"/>
          <exon e_start="16477" e_stop="16385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATCATAATCTCCAAAGACCTAAAGATTTACCTAAATTTGAGATAGAAAAATTGTAAAAATCTTTTGTTCAGTGACTCTGTATGTGTGATAACAATTATTAACAATGAAGAAATGTGAGTTGTGCAGTTCCATAGCAAGAGTTTATTGTGAATCAGATCAAGCCAGTCTTTGTTGGGATTGTGATGCCAGAGTTCACACAGCCAATTTCCTTGTAGCTAAACATTCAAGGATTCTTCTCTGTAATTCTTGCCAATCACTTACCCCATGGACTGGCTCTGGCTCTAAGCTTGGTCCCACTGTTTCTGTTTGCCAGAAATGTTTTCACAGAAATAATAATGATGGCGCAGATCAACATCTTAATGATCATAATGATACGGAAGAAGAAGAAGATGATGATGATGATACGGAAGAAGACGAAGATGATGGAAGCAGTGATGGTGATAATCAAGTTGTTCCTTTATCTTCTTCAACTTCAGATCAACCTAATCCTCCCTCATTGACTTCAAGCTCTTCTAGTAGTGAAGATTCCACTAACAGATTTAACAGAAGAAGTATAATTGGATTTTCACCTAACAGAACAGAGGAAAATATCCAATCCCATTATTGTGTAAGTCTTTAATTCCCTACCTGTTATCAATCACTCCCTCCGTTTCAATATTTGACATTTCAATCTCATAATCGTTGAAAAACGGAACGATTATTTTTTTAAACAGACTAAAAGAAAAGTAGGTCAAACAGAGAGGTAACACATTCCAATATTTCTACAGCTGAATGTGTGTTCTGTTCTCTTTTTGTATTTTCAGGGCATTACAAGACCTAAAGAGAAGATAGAAAGGAGTTCATGGAGATGGAGATAATCGGGATATTTACAGCTCAAAAGCTAATTCTGTTATCTG</genome_strand>
        <mrna_strand>ACACATCATAATCTCCAAAGACCTAAAGATTTACCTAAATTTGAGATAGAAAAATTGTAAAAATCTTTTGTTCAGTGACTCTGTATGTGTGATAACAATTATTAACAATGAAGAAATGTGAGTTGTGCAGTTCCATAGCAAGAGTTTATTGTGAATCAGATCAAGCCAGTCTTTGTTGGGATTGTGATGCCAGAGTTCACACAGCCAATTTCCTTGTAGCTAAACATTCAAGGATTCTTCTCTGTAATTCTTGCCAATCACTTACCCCATGGACTGGCTCTGGCTCTAAGCTTGGTCCCACTGTTTCTGTTTGCCAGAAATGTTTTCACAGAAATAATAATGATGGCGCAGATCAACATCTTAATGATCATAATGATACGGAAGAAGAAGAAGATGATGATGATGATACGGAAGAAGACGAAGATGATGGAAGCAGTGATGGTGATAATCAAGTTGTTCCTTTATCTTCTTCAACTTCAGATCAACCTAATCCTCCCTCATTGACTTCAAGCTCTTCTAGTAGTGAAGATTCCACTAACAGATTTAACAGAAGAAGTATAATTGGATTTTCACCTAACAGAACAGAGGAAAATATCCAATCCCATTATTGT....................................................................................................................................................................................................GGCATTACAAGACCTAAAGAGAAGATAGAAAGGAGTTCATGGAGATGGAGATAATCGGGATATTTACAGCTCAAAAGCTAATTCTGTTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331300" ref_strand="+" ref_description="SGN-E331300 [cTOD-6-H4]">
      <seq>acatcataatctccaaagacctaaagatttacctaaatttgagatagaaaaattgtaaaaatcttttgttcagtgactctgtatgtgtgataacaattattaacaatgaagaaatgtgagttgtgcagttccatagcaagagtttattgtgaatcagatcaagccagtctttgttgggattgtgatgccagagttcacacagccaatttccttgtagctaaacattcaaagattcttctctgtaattcttgccaatcacttaccccatggactggctctggctctaagcttggtcccactgtttctgtttgccagaaatgttttcacagaaataataatgatggcgcagatcaacatcttaatgatcataatgatacggaagaagaagaagatgatgatgatgatacggaagaagacgaagatgatggaagcagtgatggtgataatcaagttgttcctttatcttcttcaacttcagatcaacctaatcctccctcattgacttcaagctcttctagtagtgaagattccactaacagatttaacagaagaagtataattggattttcacctaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="17582" stop="16405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17282" g_stop="16705" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E331300" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17282" e_stop="16705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCATAATCTCCAAAGACCTAAAGATTTACCTAAATTTGAGATAGAAAAATTGTAAAAATCTTTTGTTCAGTGACTCTGTATGTGTGATAACAATTATTAACAATGAAGAAATGTGAGTTGTGCAGTTCCATAGCAAGAGTTTATTGTGAATCAGATCAAGCCAGTCTTTGTTGGGATTGTGATGCCAGAGTTCACACAGCCAATTTCCTTGTAGCTAAACATTCAAGGATTCTTCTCTGTAATTCTTGCCAATCACTTACCCCATGGACTGGCTCTGGCTCTAAGCTTGGTCCCACTGTTTCTGTTTGCCAGAAATGTTTTCACAGAAATAATAATGATGGCGCAGATCAACATCTTAATGATCATAATGATACGGAAGAAGAAGAAGATGATGATGATGATACGGAAGAAGACGAAGATGATGGAAGCAGTGATGGTGATAATCAAGTTGTTCCTTTATCTTCTTCAACTTCAGATCAACCTAATCCTCCCTCATTGACTTCAAGCTCTTCTAGTAGTGAAGATTCCACTAACAGATTTAACAGAAGAAGTATAATTGGATTTTCACCTAACAG</genome_strand>
        <mrna_strand>ACATCATAATCTCCAAAGACCTAAAGATTTACCTAAATTTGAGATAGAAAAATTGTAAAAATCTTTTGTTCAGTGACTCTGTATGTGTGATAACAATTATTAACAATGAAGAAATGTGAGTTGTGCAGTTCCATAGCAAGAGTTTATTGTGAATCAGATCAAGCCAGTCTTTGTTGGGATTGTGATGCCAGAGTTCACACAGCCAATTTCCTTGTAGCTAAACATTCAAAGATTCTTCTCTGTAATTCTTGCCAATCACTTACCCCATGGACTGGCTCTGGCTCTAAGCTTGGTCCCACTGTTTCTGTTTGCCAGAAATGTTTTCACAGAAATAATAATGATGGCGCAGATCAACATCTTAATGATCATAATGATACGGAAGAAGAAGAAGATGATGATGATGATACGGAAGAAGACGAAGATGATGGAAGCAGTGATGGTGATAATCAAGTTGTTCCTTTATCTTCTTCAACTTCAGATCAACCTAATCCTCCCTCATTGACTTCAAGCTCTTCTAGTAGTGAAGATTCCACTAACAGATTTAACAGAAGAAGTATAATTGGATTTTCACCTAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310909" ref_strand="+" ref_description="SGN-E310909 [cLEZ-17-D1]">
      <seq>atcataatctccaaagacctaaagatttacctaaatttgagatagaaaaattgtaaaaatcttttgttcagtgactctgtatgtgtgataacaattattaacaatgaagaaatgtgagttgtgcagttccatagcaagagtttattgtgaatcagatcaagccagtctttgttgggattgtgatgccagagttcacacagccaatttccttgtagctaaacattcaaggattcttctctgtaattcttgccaatcacttaccccatggactggctctggctctaagcttggtcccactgtttctgtttgccagaaatgttttcacagaaataataatgatggcgcagatcaacatcttaatgatcataatgatacggaagaagaagaagatgatgatgatgatacggaagaagacgaagatgatggaagcagtgatggtgataatcaagttgttcctttatcttcttcaacttcagatcaacctaatcctccctcattgacttcaagctcttctagtagtgaagattccactaacagatttaacagaagaagtataattggattttcacctaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="17580" stop="16405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17280" g_stop="16705" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E310909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17280" e_stop="16705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATAATCTCCAAAGACCTAAAGATTTACCTAAATTTGAGATAGAAAAATTGTAAAAATCTTTTGTTCAGTGACTCTGTATGTGTGATAACAATTATTAACAATGAAGAAATGTGAGTTGTGCAGTTCCATAGCAAGAGTTTATTGTGAATCAGATCAAGCCAGTCTTTGTTGGGATTGTGATGCCAGAGTTCACACAGCCAATTTCCTTGTAGCTAAACATTCAAGGATTCTTCTCTGTAATTCTTGCCAATCACTTACCCCATGGACTGGCTCTGGCTCTAAGCTTGGTCCCACTGTTTCTGTTTGCCAGAAATGTTTTCACAGAAATAATAATGATGGCGCAGATCAACATCTTAATGATCATAATGATACGGAAGAAGAAGAAGATGATGATGATGATACGGAAGAAGACGAAGATGATGGAAGCAGTGATGGTGATAATCAAGTTGTTCCTTTATCTTCTTCAACTTCAGATCAACCTAATCCTCCCTCATTGACTTCAAGCTCTTCTAGTAGTGAAGATTCCACTAACAGATTTAACAGAAGAAGTATAATTGGATTTTCACCTAACAG</genome_strand>
        <mrna_strand>ATCATAATCTCCAAAGACCTAAAGATTTACCTAAATTTGAGATAGAAAAATTGTAAAAATCTTTTGTTCAGTGACTCTGTATGTGTGATAACAATTATTAACAATGAAGAAATGTGAGTTGTGCAGTTCCATAGCAAGAGTTTATTGTGAATCAGATCAAGCCAGTCTTTGTTGGGATTGTGATGCCAGAGTTCACACAGCCAATTTCCTTGTAGCTAAACATTCAAGGATTCTTCTCTGTAATTCTTGCCAATCACTTACCCCATGGACTGGCTCTGGCTCTAAGCTTGGTCCCACTGTTTCTGTTTGCCAGAAATGTTTTCACAGAAATAATAATGATGGCGCAGATCAACATCTTAATGATCATAATGATACGGAAGAAGAAGAAGATGATGATGATGATACGGAAGAAGACGAAGATGATGGAAGCAGTGATGGTGATAATCAAGTTGTTCCTTTATCTTCTTCAACTTCAGATCAACCTAATCCTCCCTCATTGACTTCAAGCTCTTCTAGTAGTGAAGATTCCACTAACAGATTTAACAGAAGAAGTATAATTGGATTTTCACCTAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215113" ref_strand="+" ref_description="SGN-E215113 [cLEC-78-P13]">
      <seq>ggaggtggaggagcaagttttggtgttattttagcatggaaactcaaacttgttcctgtcccggagaaagttactgttttcaatgtttacaagaggttagagggtaaccacaatctcctcacaaaatgggaaagcaccgcgcatcaattacctgataaattacttatcagagtaattatacaaaatgatggaacagagaatgacaagtacgttgaagtaatctttcaatcactatacctcggacctgttgatgagttaattccattgctcaaagaaaaattccctgaatttgatttggacaaaaaggattgcttccaagagcctgttgtggattgtagtaacaggccttgtattaagaaagaatgtcgcgaatcttcctggattggatcagtcctgtatttctatggtaggagaacaaatgaatcacttgaagttctgctagaaaagagtattccaacacagaagaattatttcaaagccacatctgattttgtgaagactccagttccggaaagtggttgggaaatggttgaaaaaatgtttttggaagaagaaagacctcagatgataatggagccattangtgggatattagatgaaatatcagaatctgaaattccattccctcatagaaaggggaatttgtataatattcagtactttggtgaactggggcgataacagcgagagtatatcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="23519" stop="22221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23219" g_stop="22521" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E215113" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23219" e_stop="22521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGGAGGAGCAAGTTTTGGTGTTATTTTAGCATGGAAACTCAAACTTGTTCCTGTCCCGGAGAAAGTTACTGTTTTCAATGTTTACAAGAGGTTAGAGGGTAACCACAATCTCCTCACAAAATGGGAAAGCACCGCGCATCAATTACCTGATAAATTACTTATCAGAGTAATTATACAAAATGATGGAACAGAGAATGACAAGTACGTTGAAGTAATCTTTCAATCACTATACCTCGGACCTGTTGATGAGTTAATTCCATTGCTCAAAGAAAAATTCCCTGAATTTGATTTGGACAAAAAGGATTGCTTCCAAGAGCCTGTTGTGGATTGTAGTAACAGGCCTTGTATTAAGAAAGAATGTCGCGAATCTTCCTGGATTGGATCAGTCCTGTATTTCTATGGTAGGAGAACAAATGAATCACTTGAAGTTCTGCTAGAAAAGAGTATTCCAACACAGAAGAATTATTTCAAAGCCACATCTGATTTTGTGAAGACTCCAGTTCCGGAAAGTGGTTGGGAAATGGTTGAAAAAATGTTTTTGGAAGAAGAAAGACCTCAGATGATAATGGAGCCATTAGGTGGGATATTAGATGAAATATCAGAATCTGAAATTCCATTCCCTCATAGAAAGGGGAATTTGTATAATATTCAGTAC-TTGGTGAACTGGGGCGATAACAGCGAGAGTATATCAAGC</genome_strand>
        <mrna_strand>GGAGGTGGAGGAGCAAGTTTTGGTGTTATTTTAGCATGGAAACTCAAACTTGTTCCTGTCCCGGAGAAAGTTACTGTTTTCAATGTTTACAAGAGGTTAGAGGGTAACCACAATCTCCTCACAAAATGGGAAAGCACCGCGCATCAATTACCTGATAAATTACTTATCAGAGTAATTATACAAAATGATGGAACAGAGAATGACAAGTACGTTGAAGTAATCTTTCAATCACTATACCTCGGACCTGTTGATGAGTTAATTCCATTGCTCAAAGAAAAATTCCCTGAATTTGATTTGGACAAAAAGGATTGCTTCCAAGAGCCTGTTGTGGATTGTAGTAACAGGCCTTGTATTAAGAAAGAATGTCGCGAATCTTCCTGGATTGGATCAGTCCTGTATTTCTATGGTAGGAGAACAAATGAATCACTTGAAGTTCTGCTAGAAAAGAGTATTCCAACACAGAAGAATTATTTCAAAGCCACATCTGATTTTGTGAAGACTCCAGTTCCGGAAAGTGGTTGGGAAATGGTTGAAAAAATGTTTTTGGAAGAAGAAAGACCTCAGATGATAATGGAGCCATTANGTGGGATATTAGATGAAATATCAGAATCTGAAATTCCATTCCCTCATAGAAAGGGGAATTTGTATAATATTCAGTACTTTGGTGAACTGGGGCGATAACAGCGAGAGTATATCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211145" ref_strand="+" ref_description="SGN-E211145 [cLEC-70-A22]">
      <seq>aatttctattcctcaaaagaaaaagaaaaattatgggtaaccttcaaatcctctctcttttaatcttttccttctttttgtcaaaatgttactccaaacaagaagattttgttcagtgtctttctaaatactctaaaaccaacgttacacacaacatttacaccccaaaatctccaacctattcatctatcttagaatatgctcaaaaaaatcctagatggatgaattcttcacatcccattttcattgtttcccctacaaaagaatcacaaatcaagccggttattcgctgtgcaaaaaaactagggttgcaaatgaaaataaaaagtggtggccatgactatgaaggcatatcttttcgctctaaaaccccttttgttatgcttgatttaagcaatcttaacaaaatcaagattgatttaaatgaaggaacagtttgggttcaagcaggggcaaccctcggccagctttactatgcaattgctaaaaaaagtaatgtgcatggttttgctggaggtgtttgtttcagtattggcactggagggattattagtggtggagggttaggtactttgatgagaaaattcgggcttgcagctgataatgttgtagatgctcgcgtaatagatgtaaatggaaaaattcttaataagaacaaaatgaatgaagatctgttttgggcaataagaagangtggangagcaagttttggtgttattttagcatggaaactcaaacttgttccctgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="24208" stop="22859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23908" g_stop="23159" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E211145" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23908" e_stop="23159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTATTCCTCAAAAGAAAAAGAAAAATTATGGGTAACCTTCAAATCCTCTCTCTTTTAATCTTTTCCTTCTTTTTGTCAAAATGTTACTCCAAACAAGAAGATTTTGTTCAGTGTCTTTCTAAATACTCTAAAACCAACGTTACACACAACATTTACACCCCAAAATCTCCAACCTATTCATCTATCTTAGAATATGCTCAAAAAAATCCTAGATGGATGAATTCTTCACATCCCATTTTCATTGTTTCCCCTACAAAAGAATCACAAATCAAGCCGGTTATTCGCTGTGCAAAAAAACTAGGGTTGCAAATGAAAATAAAAAGTGGTGGCCATGACTATGAAGGCATATCTTTTCGCTCTAAAACCCCTTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGAAGGAACAGTTTGGGTTCAAGCAGGGGCAACCCTCGGCCAGCTTTACTATGCAATTGCTAAAAAAAGTAATGTGCATGGTTTTGCTGGAGGTGTTTGTTTCAGTATTGGCACTGGAGGGATTATTAGTGGTGGAGGGTTAGGTACTTTGATGAGAAAATTCGGGCTTGCAGCTGATAATGTTGTAGATGCTCGCGTAATAGATGTAAATGGAAAAATTCTTAATAAGAACAAAATGAATGAAGATCTGTTTTGGGCAATAAGAGGAGGTGGAGGAGCAAGTTTTGGTGTTATTTTAGCATGGAAACTCAAACTTGTT-CCTGTCC</genome_strand>
        <mrna_strand>AATTTCTATTCCTCAAAAGAAAAAGAAAAATTATGGGTAACCTTCAAATCCTCTCTCTTTTAATCTTTTCCTTCTTTTTGTCAAAATGTTACTCCAAACAAGAAGATTTTGTTCAGTGTCTTTCTAAATACTCTAAAACCAACGTTACACACAACATTTACACCCCAAAATCTCCAACCTATTCATCTATCTTAGAATATGCTCAAAAAAATCCTAGATGGATGAATTCTTCACATCCCATTTTCATTGTTTCCCCTACAAAAGAATCACAAATCAAGCCGGTTATTCGCTGTGCAAAAAAACTAGGGTTGCAAATGAAAATAAAAAGTGGTGGCCATGACTATGAAGGCATATCTTTTCGCTCTAAAACCCCTTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGAAGGAACAGTTTGGGTTCAAGCAGGGGCAACCCTCGGCCAGCTTTACTATGCAATTGCTAAAAAAAGTAATGTGCATGGTTTTGCTGGAGGTGTTTGTTTCAGTATTGGCACTGGAGGGATTATTAGTGGTGGAGGGTTAGGTACTTTGATGAGAAAATTCGGGCTTGCAGCTGATAATGTTGTAGATGCTCGCGTAATAGATGTAAATGGAAAAATTCTTAATAAGAACAAAATGAATGAAGATCTGTTTTGGGCAATAAGAAGANGTGGANGAGCAAGTTTTGGTGTTATTTTAGCATGGAAACTCAAACTTGTTCCCTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205411" ref_strand="+" ref_description="SGN-E205411 [cLEC-28-B19]">
      <seq>tcaaatcctctctcttttaatcttttccttctttttgtcaaaatgttactccaaacaagaagattttgttcagtgtctttctaaatactctaaaaccaacgttacacacaacatttacaccccaaaatctccaacctattcatctatcttagaatatgctcaaaaaaatcctagatggatgaattcttcacatcccattttcattgtttcccctacaaaagaatcacaaatcaagccggttattcgctgtgcaaaaaaactagggttgcaaatgaaaataaaaagtggtggccatgactatgaaggcatatcttttcgctctaaaaccccttttgttatgcttgatttaagcaatcttaacaaaatcaagattgatttaaatgaaggaacagtttgggttcaagcaggggcaaccctcggccagctttactatgcaattgctaaaaaaagtaatgtgcatggttttgctggaggtgtttgtttcagtattggcactggagggattattagtggtggagggttaggtactttgatgagaaaattcgggcttgcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="24165" stop="23009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23865" g_stop="23309" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E205411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23865" e_stop="23309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCCTCTCTCTTTTAATCTTTTCCTTCTTTTTGTCAAAATGTTACTCCAAACAAGAAGATTTTGTTCAGTGTCTTTCTAAATACTCTAAAACCAACGTTACACACAACATTTACACCCCAAAATCTCCAACCTATTCATCTATCTTAGAATATGCTCAAAAAAATCCTAGATGGATGAATTCTTCACATCCCATTTTCATTGTTTCCCCTACAAAAGAATCACAAATCAAGCCGGTTATTCGCTGTGCAAAAAAACTAGGGTTGCAAATGAAAATAAAAAGTGGTGGCCATGACTATGAAGGCATATCTTTTCGCTCTAAAACCCCTTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGAAGGAACAGTTTGGGTTCAAGCAGGGGCAACCCTCGGCCAGCTTTACTATGCAATTGCTAAAAAAAGTAATGTGCATGGTTTTGCTGGAGGTGTTTGTTTCAGTATTGGCACTGGAGGGATTATTAGTGGTGGAGGGTTAGGTACTTTGATGAGAAAATTCGGGCTTGCAGCTG</genome_strand>
        <mrna_strand>TCAAATCCTCTCTCTTTTAATCTTTTCCTTCTTTTTGTCAAAATGTTACTCCAAACAAGAAGATTTTGTTCAGTGTCTTTCTAAATACTCTAAAACCAACGTTACACACAACATTTACACCCCAAAATCTCCAACCTATTCATCTATCTTAGAATATGCTCAAAAAAATCCTAGATGGATGAATTCTTCACATCCCATTTTCATTGTTTCCCCTACAAAAGAATCACAAATCAAGCCGGTTATTCGCTGTGCAAAAAAACTAGGGTTGCAAATGAAAATAAAAAGTGGTGGCCATGACTATGAAGGCATATCTTTTCGCTCTAAAACCCCTTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGAAGGAACAGTTTGGGTTCAAGCAGGGGCAACCCTCGGCCAGCTTTACTATGCAATTGCTAAAAAAAGTAATGTGCATGGTTTTGCTGGAGGTGTTTGTTTCAGTATTGGCACTGGAGGGATTATTAGTGGTGGAGGGTTAGGTACTTTGATGAGAAAATTCGGGCTTGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211512" ref_strand="+" ref_description="SGN-E211512 [cLEC-67-F10]">
      <seq>aatttctattcctcaaaagaaaaagaaaaattatgggtaaccttcaaatcctctctcttttaatcttttccttctttttgtcaaaatgttactccaaacaagaagattttgttcagtgtctttctaaatactctaaaaccaacgttacacacaacatttacaccccaaaatctccaacctattcatctatcttagaatatgctcaaaaaaatcctagatggatgaattcttcacatcccattttcattgtttcccctacaaaagaatcacaaatcaagccggttattcgctgtgcaaaaaaactagggttgcaaatgaaaataaaaagtggtggccatgactatgaaggcatatcttttcgctctaaaaccccttttgttatgcttgatttaagcaatcttaacaaaatcaagattgatttaaatgaaggaacagtttgggttcaagcaggggcaaccctcggccagctttactatgcaattgctaaaaaaagtaatgtgcatggttttgctggaggtgtttgtttcagtattggcactggaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="24208" stop="23064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23908" g_stop="23364" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E211512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23908" e_stop="23364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTATTCCTCAAAAGAAAAAGAAAAATTATGGGTAACCTTCAAATCCTCTCTCTTTTAATCTTTTCCTTCTTTTTGTCAAAATGTTACTCCAAACAAGAAGATTTTGTTCAGTGTCTTTCTAAATACTCTAAAACCAACGTTACACACAACATTTACACCCCAAAATCTCCAACCTATTCATCTATCTTAGAATATGCTCAAAAAAATCCTAGATGGATGAATTCTTCACATCCCATTTTCATTGTTTCCCCTACAAAAGAATCACAAATCAAGCCGGTTATTCGCTGTGCAAAAAAACTAGGGTTGCAAATGAAAATAAAAAGTGGTGGCCATGACTATGAAGGCATATCTTTTCGCTCTAAAACCCCTTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGAAGGAACAGTTTGGGTTCAAGCAGGGGCAACCCTCGGCCAGCTTTACTATGCAATTGCTAAAAAAAGTAATGTGCATGGTTTTGCTGGAGGTGTTTGTTTCAGTATTGGCACTGGAGGG</genome_strand>
        <mrna_strand>AATTTCTATTCCTCAAAAGAAAAAGAAAAATTATGGGTAACCTTCAAATCCTCTCTCTTTTAATCTTTTCCTTCTTTTTGTCAAAATGTTACTCCAAACAAGAAGATTTTGTTCAGTGTCTTTCTAAATACTCTAAAACCAACGTTACACACAACATTTACACCCCAAAATCTCCAACCTATTCATCTATCTTAGAATATGCTCAAAAAAATCCTAGATGGATGAATTCTTCACATCCCATTTTCATTGTTTCCCCTACAAAAGAATCACAAATCAAGCCGGTTATTCGCTGTGCAAAAAAACTAGGGTTGCAAATGAAAATAAAAAGTGGTGGCCATGACTATGAAGGCATATCTTTTCGCTCTAAAACCCCTTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGAAGGAACAGTTTGGGTTCAAGCAGGGGCAACCCTCGGCCAGCTTTACTATGCAATTGCTAAAAAAAGTAATGTGCATGGTTTTGCTGGAGGTGTTTGTTTCAGTATTGGCACTGGAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379761" ref_strand="+" ref_description="SGN-E379761 [TUS-1-J1]">
      <seq>caaatacaacactacacaaaacatttacaccccaaattctccaacttattcatctatcctggaatatgcccaaaaaaaaccaagatggttgaattcttcacatcccaatttcattgcttcccctaaagaagaatcagaaatcaggcctatcattctttgtagtaaaaaagtaggcctacaaatcaagatcaaaagcggtggtcacgactatgaaggcatatcttatcgctctaaatcccggtttgttatgcttgatttaagcaatcttaacaaaatcaagattgatttaaatgatgaaacagtttgggttcaaacaggggcgacccttggccaactttactatgcaattgccaagaaaagtaaagttcatgcatttccaagtggtgtctgtttcagtattggcactggtggaatcatcagtggtggtgggattggcgcattgatgaggaaattcggcctgtcagctgataacgttgtagatgcacgtgtgatggatgtgaatggaaaaattcttgacaggaagatgaatgaagatttgttttgggcgataagaggaggcggaggagcaagtttcggtgttattctagcatggaaactaaaattggttcgtattccagtgaagcttactgttttcacgattcgtacagaagttagagggtaacctaaatctcctccnaaaaatgggaaacatagcacatcaactccctgaagatttgttaatcagagttattatttcaaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="+" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="32209" stop="33550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32509" g_stop="33250" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="+" ref_id="SGN-E379761" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32509" e_stop="33250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAACACTACACAAAACATTTACACCCCAAATTCTCCAACTTATTCATCTATCCTGGAATATGCCCAAAAAAAACCAAGATGGTTGAATTCTTCACATCCCAATTTCATTGCTTCCCCTAAAGAAGAATCAGAAATCAGGCCTATCATTCTTTGTAGTAAAAAAGTAGGCCTACAAATCAAGATCAAAAGCGGTGGTCACGACTATGAAGGCATATCTTATCGCTCTAAATCCCGGTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGATGAAACAGTTTGGGTTCAAACAGGGGCGACCCTTGGCCAACTTTACTATGCAATTGCCAAGAAAAGTAAAGTTCATGCATTTCCAAGTGGTGTCTGTTTCAGTATTGGCACTGGTGGAATCATCAGTGGTGGTGGGATTGGCGCATTGATGAGGAAATTCGGCCTGTCAGCTGATAACGTTGTAGATGCACGTGTGATGGATGTGAATGGAAAAATTCTTGACAGGAAGATGAATGAAGATTTGTTTTGGGCGATAAGAGGAGGCGGAGGAGCAAGTTTCGGTGTTATTCTAGCATGGAAACTAAAATTGGTTCGTATTCCAGTGAAGCTTACTGTTTTCACGATTCGTA-GGAAGTTAGAGGGTAACCTAAATCTCCTCCAAAAATGGGAAAACATAGCACATCAACTCCCTGAAGATTTGTTAATCAGAGTTATTATTCAAAATGCT</genome_strand>
        <mrna_strand>CAAATACAACACTACACAAAACATTTACACCCCAAATTCTCCAACTTATTCATCTATCCTGGAATATGCCCAAAAAAAACCAAGATGGTTGAATTCTTCACATCCCAATTTCATTGCTTCCCCTAAAGAAGAATCAGAAATCAGGCCTATCATTCTTTGTAGTAAAAAAGTAGGCCTACAAATCAAGATCAAAAGCGGTGGTCACGACTATGAAGGCATATCTTATCGCTCTAAATCCCGGTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGATGAAACAGTTTGGGTTCAAACAGGGGCGACCCTTGGCCAACTTTACTATGCAATTGCCAAGAAAAGTAAAGTTCATGCATTTCCAAGTGGTGTCTGTTTCAGTATTGGCACTGGTGGAATCATCAGTGGTGGTGGGATTGGCGCATTGATGAGGAAATTCGGCCTGTCAGCTGATAACGTTGTAGATGCACGTGTGATGGATGTGAATGGAAAAATTCTTGACAGGAAGATGAATGAAGATTTGTTTTGGGCGATAAGAGGAGGCGGAGGAGCAAGTTTCGGTGTTATTCTAGCATGGAAACTAAAATTGGTTCGTATTCCAGTGAAGCTTACTGTTTTCACGATTCGTACAGAAGTTAGAGGGTAACCTAAATCTCCTCCNAAAAATGGGAAACATAGCACATCAACTCCCTGAAGATTTGTTAATCAGAGTTATTATTTCAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201094" ref_strand="+" ref_description="SGN-E201094 [cLEC-10-O19]">
      <seq>caaaaacaacactacacaaaacatttacaccccaaattctccaacttattcatctatcctggaatatgcccaaaaaaaaccaagatggttgaattcttcacatcccaatttcattgcttcccctaaagaagaatcagaaatcaggcctatcattctttgtagtaaaaaagtaggcctacaaatcaagatcaaaagcggtggtcacgactatgaaggcatatcttatcgctctaaatcccggtttgttatgcttgatttaagcaatcttaacaaaatcaagattgatttaaatgatgaaacagtttgggttcaaacaggggcgacccttggccaactttactatgcaattgccaagaaaagtaaagttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="+" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="32209" stop="33179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32509" g_stop="32879" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="+" ref_id="SGN-E201094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32509" e_stop="32879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAACACTACACAAAACATTTACACCCCAAATTCTCCAACTTATTCATCTATCCTGGAATATGCCCAAAAAAAACCAAGATGGTTGAATTCTTCACATCCCAATTTCATTGCTTCCCCTAAAGAAGAATCAGAAATCAGGCCTATCATTCTTTGTAGTAAAAAAGTAGGCCTACAAATCAAGATCAAAAGCGGTGGTCACGACTATGAAGGCATATCTTATCGCTCTAAATCCCGGTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGATGAAACAGTTTGGGTTCAAACAGGGGCGACCCTTGGCCAACTTTACTATGCAATTGCCAAGAAAAGTAAAGTTCATG</genome_strand>
        <mrna_strand>CAAAAACAACACTACACAAAACATTTACACCCCAAATTCTCCAACTTATTCATCTATCCTGGAATATGCCCAAAAAAAACCAAGATGGTTGAATTCTTCACATCCCAATTTCATTGCTTCCCCTAAAGAAGAATCAGAAATCAGGCCTATCATTCTTTGTAGTAAAAAAGTAGGCCTACAAATCAAGATCAAAAGCGGTGGTCACGACTATGAAGGCATATCTTATCGCTCTAAATCCCGGTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGATGAAACAGTTTGGGTTCAAACAGGGGCGACCCTTGGCCAACTTTACTATGCAATTGCCAAGAAAAGTAAAGTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379372" ref_strand="+" ref_description="SGN-E379372 [TUS-1-J1](-)">
      <seq>gttcaattggagcgaaaagattgctttcaaaagactactagtactggtgcggagaaagaatgccatgaagtttcctggattcagtcaatcttatatttctatttcagaaaactaactgatgcccctgaaacattgctagaaaagagtattccaacaaagaaaagttacgacaaagggacgtctgattttgtgaagactccagttccagaaagtggttgggaaatgatagaaagactgttcttggaagaagaaagtccccagatgatctttgagccaatgggtgcgaaatttgatgaaatatcagaatccgaaattccattccctcatagaaaagggaatttgtacaatattcagtacttgaactactggagcgataacagtgagactatatcaagccagaagataggatggatgaggaaactttaccaggaaatggagccatatgtttcaaattctccaagaactgcttatctgaactacagggaccttgattttgggacaaattcagaggactacagctattccaaggccaaaatatggggtcaaaagtattatagtggcaactttgagagattggctcaagttaagagtaaggtggatcccaacaatttcttcagaaatgaacaaagtattccaccttattctacaaattgaagagtcattttactcacatgtctcatattattagacaggccagttagtgcttgtcacactttgtaatatgagatacaaagaagtttcagtttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="+" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="33061" stop="34412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33361" g_stop="34111" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="+" ref_id="SGN-E379372" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33361" e_stop="34111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAATTTGGAGCGAAAAGATTGCTTTCAAAAGACTACTAGTACTGGTGCGGAGAAAGAATGCCATGAAGTTTCCTGGATTCAGTCAATCTTATATTTCTATTTCAGAAAACTAACTGATGCCCCTGAAACATTGCTAGAAAAGAGTATTCCAACAAAGAAAAGTTACGACAAAGGGACGTCTGATTTTGTGAAGACTCCAGTTCCAGAAAGTGGTTGGGAAATGATAGAAAGACTGTTCTTGGAAGAAGAAAGTCCCCAGATGATCTTTGAGCCAATGGGTGCGAAATTTGATGAAATATCAGAATCCGAAATTCCATTCCCTCATAGAAAAGGGAATTTGTACAATATTCAGTACTTGAACTACTGGAGCGATAACAGTGAGACTATATCAAGCCAGAAGATAGGATGGATGAGGAAACTTTACCAGGAAATGGAGCCATATGTTTCAAATTCTCCAAGAACTGCTTATCTGAACTACAGGGACCTTGATTTTGGGACAAATTCAGAGGACTACAGCTATTCCAAGGCCAAAATATGGGGTCAAAAGTATTATAGTGGCAACTTTGAGAGATTGGCTCAAGTTAAGAGTAAGGTGGATCCCAACAATTTCTTCAGAAATGAACAAAGTATTCCACCTTATTCTACAAATTGAAGAGTCATTTTACTCACATGTCTCATATTATTAGACAGGCCAGTTAGTGCTTGTCACACATTGTAATATGATATTACAAAGAAGTTTCAGTTTTAA</genome_strand>
        <mrna_strand>GTTCAA-TTGGAGCGAAAAGATTGCTTTCAAAAGACTACTAGTACTGGTGCGGAGAAAGAATGCCATGAAGTTTCCTGGATTCAGTCAATCTTATATTTCTATTTCAGAAAACTAACTGATGCCCCTGAAACATTGCTAGAAAAGAGTATTCCAACAAAGAAAAGTTACGACAAAGGGACGTCTGATTTTGTGAAGACTCCAGTTCCAGAAAGTGGTTGGGAAATGATAGAAAGACTGTTCTTGGAAGAAGAAAGTCCCCAGATGATCTTTGAGCCAATGGGTGCGAAATTTGATGAAATATCAGAATCCGAAATTCCATTCCCTCATAGAAAAGGGAATTTGTACAATATTCAGTACTTGAACTACTGGAGCGATAACAGTGAGACTATATCAAGCCAGAAGATAGGATGGATGAGGAAACTTTACCAGGAAATGGAGCCATATGTTTCAAATTCTCCAAGAACTGCTTATCTGAACTACAGGGACCTTGATTTTGGGACAAATTCAGAGGACTACAGCTATTCCAAGGCCAAAATATGGGGTCAAAAGTATTATAGTGGCAACTTTGAGAGATTGGCTCAAGTTAAGAGTAAGGTGGATCCCAACAATTTCTTCAGAAATGAACAAAGTATTCCACCTTATTCTACAAATTGAAGAGTCATTTTACTCACATGTCTCATATTATTAGACAGGCCAGTTAGTGCTTGTCACACTTTGTAATATGAGA-TACAAAGAAGTTTCAGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732338" ref_strand="+" ref_description="SGN-E732338 [LB01DF04]">
      <seq>gtgtagtgcatgagtttcttgaacatgttgtgacaagagaacattttcttgggttaataaattgggttgagaatcattgtccggagccagctctagcaagaatttatgccacgaatgaagatacacctgcgctggtggtgtcatcggggcaacaatttccggtgaggaagattgagtttggatggggagaggcggtgtttggttcgtaccattttccatgggaagggaaatcaggatatgtgatgccaatgccaagtccaaaaggaaatggagattggattgtttacatgcatatgttgaagggacaaattgatttgattgaggctattgcgtcaaatgtgttcaagcccctcactgcagattatctcaatttaaagtaatcaatcaatgtttgtgtatacatatgtactcggagatctgaaggggagctttggagcaatgaaaacgttgtttgtttccgtttgactcatagattgtgggttcaagtatagaaacaaattacaatacttgtgtttatacaacacgacctactaacataggatgttttctgcataaaaactattttaatatatatactaagcttgtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="42761" stop="41573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42461" g_stop="41874" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="598"/>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E732338" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42461" e_stop="41874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGTGCATGAGTTTCTTGAACATGTTGTGACAAGAGAACATTTTCTTGGGTTAATAAATTGGGTTGAGAATCATCGTCCGGAGCCAGCTCTAGCAAGAATTTATGCCACGAATGAAGATACACCTGCGCTGGTGGTGTCATCGGGGCAACAATTTCCGGTGAGGAAGATTGAGTTTGGATGGGGAGAGGCGGTGTTTGGTTCGTACCATTTTCCATGGGAAGGGAAATCAGGATATGTGATGCCAATGCCAAGTCCAAAAGGAAATGGAGATTGGATTGTTTACATGCATATGTTGAAGGGACAAATTGATTTGATTGAGGCTATTGCGTCAAATGTGTTCAAGCCCCTCACTGCAGATTATCTCAGTTTAAAGTAATCAATCAATGTTTGTGTATACATATGTACTCGGAGATCAGAAGGGGAGCTTTGGAGCAATGAAAACGTTGTTTGTTTCCGTTTGACTCATAGGTTGTGGGTTCAAGTATAGAAACAAATTACAATACTTGTGTTTATACAACACGACCTACTAACATAGGATGTTTTCTGCATAAAAACTACTTTAATATATATACTAAGCTTGTTTG</genome_strand>
        <mrna_strand>GTGTAGTGCATGAGTTTCTTGAACATGTTGTGACAAGAGAACATTTTCTTGGGTTAATAAATTGGGTTGAGAATCATTGTCCGGAGCCAGCTCTAGCAAGAATTTATGCCACGAATGAAGATACACCTGCGCTGGTGGTGTCATCGGGGCAACAATTTCCGGTGAGGAAGATTGAGTTTGGATGGGGAGAGGCGGTGTTTGGTTCGTACCATTTTCCATGGGAAGGGAAATCAGGATATGTGATGCCAATGCCAAGTCCAAAAGGAAATGGAGATTGGATTGTTTACATGCATATGTTGAAGGGACAAATTGATTTGATTGAGGCTATTGCGTCAAATGTGTTCAAGCCCCTCACTGCAGATTATCTCAATTTAAAGTAATCAATCAATGTTTGTGTATACATATGTACTCGGAGATCTGAAGGGGAGCTTTGGAGCAATGAAAACGTTGTTTGTTTCCGTTTGACTCATAGATTGTGGGTTCAAGTATAGAAACAAATTACAATACTTGTGTTTATACAACACGACCTACTAACATAGGATGTTTTCTGCATAAAAACTATTTTAATATATATACTAAGCTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733518" ref_strand="+" ref_description="SGN-E733518 [LB10AH11]">
      <seq>gtgcagtgcatgagtttcttgaacatgttgtgacaagagaacattttcttgggttaataaattgggttgagaatcattgtccggagccagctctagcaagaatttatgccacgaatgaagatacacctgcgctggtggtgtcatcggggcaacaatttccggtgaggaagattgagtttggatggggagaggcggtgtttggttcgtaccattttccatgggaagggaaatcaggatatgtgatgccaatgccaagtccaaaaggaaatggagattggattgtttacatgcatatgttgaagggacaaattgatttgattgaggctattgcgtcaaatgtgttcaagcccctcactgcagattatctcaatttaaagtaatcaatcaatgtttgtgtatacatatgtactcggagatctgaaggggagctttggagcaatgaaaacgttgtttgtttccgtttgactcatagattgtgggttcaagtatagaaacaaattacaatacttgtgtttatacaacacgacctactaacataggatgttttctgcataaaaactattttaatatatatactaagcttgtttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="42761" stop="41573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42461" g_stop="41874" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="589" polyA_stop="598"/>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E733518" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42461" e_stop="41874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGTGCATGAGTTTCTTGAACATGTTGTGACAAGAGAACATTTTCTTGGGTTAATAAATTGGGTTGAGAATCATCGTCCGGAGCCAGCTCTAGCAAGAATTTATGCCACGAATGAAGATACACCTGCGCTGGTGGTGTCATCGGGGCAACAATTTCCGGTGAGGAAGATTGAGTTTGGATGGGGAGAGGCGGTGTTTGGTTCGTACCATTTTCCATGGGAAGGGAAATCAGGATATGTGATGCCAATGCCAAGTCCAAAAGGAAATGGAGATTGGATTGTTTACATGCATATGTTGAAGGGACAAATTGATTTGATTGAGGCTATTGCGTCAAATGTGTTCAAGCCCCTCACTGCAGATTATCTCAGTTTAAAGTAATCAATCAATGTTTGTGTATACATATGTACTCGGAGATCAGAAGGGGAGCTTTGGAGCAATGAAAACGTTGTTTGTTTCCGTTTGACTCATAGGTTGTGGGTTCAAGTATAGAAACAAATTACAATACTTGTGTTTATACAACACGACCTACTAACATAGGATGTTTTCTGCATAAAAACTACTTTAATATATATACTAAGCTTGTTTG</genome_strand>
        <mrna_strand>GTGCAGTGCATGAGTTTCTTGAACATGTTGTGACAAGAGAACATTTTCTTGGGTTAATAAATTGGGTTGAGAATCATTGTCCGGAGCCAGCTCTAGCAAGAATTTATGCCACGAATGAAGATACACCTGCGCTGGTGGTGTCATCGGGGCAACAATTTCCGGTGAGGAAGATTGAGTTTGGATGGGGAGAGGCGGTGTTTGGTTCGTACCATTTTCCATGGGAAGGGAAATCAGGATATGTGATGCCAATGCCAAGTCCAAAAGGAAATGGAGATTGGATTGTTTACATGCATATGTTGAAGGGACAAATTGATTTGATTGAGGCTATTGCGTCAAATGTGTTCAAGCCCCTCACTGCAGATTATCTCAATTTAAAGTAATCAATCAATGTTTGTGTATACATATGTACTCGGAGATCTGAAGGGGAGCTTTGGAGCAATGAAAACGTTGTTTGTTTCCGTTTGACTCATAGATTGTGGGTTCAAGTATAGAAACAAATTACAATACTTGTGTTTATACAACACGACCTACTAACATAGGATGTTTTCTGCATAAAAACTATTTTAATATATATACTAAGCTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728045" ref_strand="+" ref_description="SGN-E728045 [LA16CB08]">
      <seq>ctctctacatgtttcttgtatcatgggctgagttagctcagtccaaaccactctctcagctaccatctttcagacgatcttttcttactccgcggtgtccctctttctatgatcctataattgataccatgtacttacctatctcggccctgaaacaggaaaccgcaaatattgatcatgatgctgatgaaattataagtagaatttactatgttaaggccgaagaaatcaggcgcctccaatcactagccaattgtaacaacacaacgtttactaaacttgaagcattcagcgctttcctatggaaaactatagccagtgatactaataacaagttcaggcttggaattgtggttaatggaagaagtagattaagcaacggagatgaagaacaagcgaagatactagaagggtattttgggaatgttctttccatcccatttggggaaaaaaaagttgaggaactaaaagagaaatcattgagttgggttgcaagtgcagtgcatgagtttcttgaacatgttgtgacaagagaacattttcttgggttaataaattgggttgagaatcattgtccggagccagctctagcaagaatttatgccacgaatgaagatacacctgcgctggtggtgtcatcggggcaacaatttccggtgaggaagattgagtttggatggggagaggcggtgtttggttcgtaccattttccatgggaagggaaatcaggatatgtgatgccaatgccaagtccaaaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="43256" stop="41895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42956" g_stop="42195" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E728045" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42956" e_stop="42195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCAACATGTTTCTTGTATCATGGGCTGAGTTAGCTCAGTCCAAACCACTCTCTCAGCTACCATCTTTCAGACGATCTTTTCTTACTCCGCGGTGTCCCTCTTTCTATGATCCTATAATTGATACCATGTACTTACCTATCTCAGCCCTGAAACAGGAAACCGCAAATATTGATCATGATGCTGATGAAATTATAAGTAGAATTTACTATGTTAAGGCCGAAGAAATCAGGCGCCTCCAATCACTAGCCAATTGTAACAACACAACGTTTACTAAACTTGAAGCATTCAGCGCTTTCCTATGGAAAACGATAGCCAGTGATACTAATAACAAGTTCAGGCTTGGAATTGTGGTTAATGGAAGAAGTAGATTAAGCAACGGAGATGAAGAACAAGCCAAGATACTAGAAGGGTATTTTGGGAATGTTCTTTCCATCCCATTTGGGGAAAAAAAAGTTGAGGAACTAAAAGAGAAATCATTGAGTTGGGTTGCAAGTGCAGTGCATGAGTTTCTTGAACATGTTGTGACAAGAGAACATTTTCTTGGGTTAATAAATTGGGTTGAGAATCATCGTCCGGAGCCAGCTCTAGCAAGAATTTATGCCACGAATGAAGATACACCTGCGCTGGTGGTGTCATCGGGGCAACAATTTCCGGTGAGGAAGATTGAGTTTGGATGGGGAGAGGCGGTGTTTGGTTCGTACCATTTTCCATGGGAAGGGAAATCAGGATATGTGATGCCAATGCCAAGTCCAAAAGGAA</genome_strand>
        <mrna_strand>CTCTCTACATGTTTCTTGTATCATGGGCTGAGTTAGCTCAGTCCAAACCACTCTCTCAGCTACCATCTTTCAGACGATCTTTTCTTACTCCGCGGTGTCCCTCTTTCTATGATCCTATAATTGATACCATGTACTTACCTATCTCGGCCCTGAAACAGGAAACCGCAAATATTGATCATGATGCTGATGAAATTATAAGTAGAATTTACTATGTTAAGGCCGAAGAAATCAGGCGCCTCCAATCACTAGCCAATTGTAACAACACAACGTTTACTAAACTTGAAGCATTCAGCGCTTTCCTATGGAAAACTATAGCCAGTGATACTAATAACAAGTTCAGGCTTGGAATTGTGGTTAATGGAAGAAGTAGATTAAGCAACGGAGATGAAGAACAAGCGAAGATACTAGAAGGGTATTTTGGGAATGTTCTTTCCATCCCATTTGGGGAAAAAAAAGTTGAGGAACTAAAAGAGAAATCATTGAGTTGGGTTGCAAGTGCAGTGCATGAGTTTCTTGAACATGTTGTGACAAGAGAACATTTTCTTGGGTTAATAAATTGGGTTGAGAATCATTGTCCGGAGCCAGCTCTAGCAAGAATTTATGCCACGAATGAAGATACACCTGCGCTGGTGGTGTCATCGGGGCAACAATTTCCGGTGAGGAAGATTGAGTTTGGATGGGGAGAGGCGGTGTTTGGTTCGTACCATTTTCCATGGGAAGGGAAATCAGGATATGTGATGCCAATGCCAAGTCCAAAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730144" ref_strand="+" ref_description="SGN-E730144 [LA23AG12]">
      <seq>aaagattcaaaagtctctccagtattctttccctcaacaaaaagcaaaaaatatatcttagaaatattaatagatgggtgccaaaaaggacttcaatgtgaagttgataaaaacagaggtggtagcagcaatgttgccaatgcaagagcattggctatcacagtccaatcttgatttgcttttacctccagtggatgttggagtattcttatgttatcaaaatcccattatttctggaatattgtcaaaaaattggtcatttgattccatggtcaatgttcttaaggtgtctttgggtgagactttggtttcatactatgcatttgctggagagttaattcaaaaccttgctggagagcccgaaattctgtgtaacaatgctggagtggatttcatagaatcttgggctgatgtagagcttaaagagatcaactttcataatccggatgaaagcatagaaggcaagcttgtaccaaagaagaagcatggtgtactagctgttcaggttacagaactaaaatgtggaggagtagtggtgggttgtacatttgatcatagagttgctgatgcttactctttcaacatgtttcttgtatcatgggctgagttagctcagtccaaaccactctctcagctaccatctttcagacgatcttttcttactccgcggtgtccctctttctatgatcctataattgataccatgtacttacctatctcagccctgaaacaggaaaccgcaaatattgatcatgatgctgatgaaattataagtagaatttactatgttaaaggccgaagaaatcangcgcctccaatcactagcccattgtaacaacacaacgtttactaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="44454" stop="42378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44154" g_stop="43650" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43649" i_stop="43027" i_length="623">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43026" g_stop="42678" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="855" r_length="350" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E730144" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44154" e_stop="43650"/>
          <exon e_start="43026" e_stop="42678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTCAAAAGTCTCTCCAGTATTCTTTCCCTCAACAAAAAGCAAAAAATATATCTTAGAAATATTAATAGATGGGTGCCAAAAAGGACTTCAATGTGAAGTTGATAAAAACAGAGGTGGTAGCAGCAATGTTGCCAATGCAAGAGCATTGGCTATCACAGTCCAATCTTGATTTGCTTTTACCTCCAGTGGATGTTGGAGTATTCTTATGTTATCAAAATCCCATTATTTCTGGAATATTGTCAAAAAATTGGTCATTTGATTCCATGGTCAATGTTCTTAAGGTGTCTTTGGGTGAGACTTTGGTTTCATACTATGCATTTGCTGGAGAGTTAATTCAAAACCTTGCTGGAGAGCCCGAAATTCTGTGTAACAATGCTGGAGTGGATTTCATAGAATCTTGGGCTGATGTAGAGCTTAAAGAGATCAACTTTCATAATCCGGATGAAAGCATAGAAGGCAAGCTTGTACCAAAGAAGAAGCATGGTGTACTAGCTGTTCAGGTACTATTCATCATTCCTCAATCACTCTAGATATTCTTCGAATCCAGCTCGCGTCATCTCATTAACCATCTATCTGAGACTTTTGTTATTCTTTAACACCCCATCTCTGCCCAGTTGAATTTTGATTTTAGGTTCCAACATTGGGTGGGATGGAATTGCTCTGATACTATGTTAAATTAGCTCAAAAAGAAGGATTGTCCATGCGATTATATCTATTTTGAGAAACTAGGATTATTATTTTCCATGCCCACACGAGAAGCATATATACGAGTGCCTTTGTGCCGCTTGTACAAACCAGAGAAAACACCGGCGAGACCAGGGTTCAAATCCAGCTAGAGCCCTATTTGAGTCATTAGGACCAATCAAATACAAATTATTCGTTACTGTTATTAAAAGTTGCCTAAATTAAGTTAATATTGATAGATGCATCTTAAGTTTTCAAATGCTGGATTTTCCTCTTGTCTTCATGGGTTCTGTGAAGGACTAGACCACGTCAAGCCCATTTACCCTTTTTCTCCTTTTGCAACTCAACTTGAACTTGTTGTTTTGCATGCTGCTATTCCTATGAACTCTGCTCCTTACTAAAGTTTTTTGAGAATTGAAAGTTTAATAATCCATTGCAGGTTACAGAACTAAAATGTGGAGGAGTAGTGGTGGGTTGTACATTTGATCATAGAGTTGCTGATGCTTACTCTTTCAACATGTTTCTTGTATCATGGGCTGAGTTAGCTCAGTCCAAACCACTCTCTCAGCTACCATCTTTCAGACGATCTTTTCTTACTCCGCGGTGTCCCTCTTTCTATGATCCTATAATTGATACCATGTACTTACCTATCTCAGCCCTGAAACAGGAAACCGCAAATATTGATCATGATGCTGATGAAATTATAAGTAGAATTTACTATGTT-AAGGCCGAAGAAATCAGGCGCCTCCAATCACTAGCCAATTGTAACAACACAACGTTTACTAAAC</genome_strand>
        <mrna_strand>AAAGATTCAAAAGTCTCTCCAGTATTCTTTCCCTCAACAAAAAGCAAAAAATATATCTTAGAAATATTAATAGATGGGTGCCAAAAAGGACTTCAATGTGAAGTTGATAAAAACAGAGGTGGTAGCAGCAATGTTGCCAATGCAAGAGCATTGGCTATCACAGTCCAATCTTGATTTGCTTTTACCTCCAGTGGATGTTGGAGTATTCTTATGTTATCAAAATCCCATTATTTCTGGAATATTGTCAAAAAATTGGTCATTTGATTCCATGGTCAATGTTCTTAAGGTGTCTTTGGGTGAGACTTTGGTTTCATACTATGCATTTGCTGGAGAGTTAATTCAAAACCTTGCTGGAGAGCCCGAAATTCTGTGTAACAATGCTGGAGTGGATTTCATAGAATCTTGGGCTGATGTAGAGCTTAAAGAGATCAACTTTCATAATCCGGATGAAAGCATAGAAGGCAAGCTTGTACCAAAGAAGAAGCATGGTGTACTAGCTGTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACAGAACTAAAATGTGGAGGAGTAGTGGTGGGTTGTACATTTGATCATAGAGTTGCTGATGCTTACTCTTTCAACATGTTTCTTGTATCATGGGCTGAGTTAGCTCAGTCCAAACCACTCTCTCAGCTACCATCTTTCAGACGATCTTTTCTTACTCCGCGGTGTCCCTCTTTCTATGATCCTATAATTGATACCATGTACTTACCTATCTCAGCCCTGAAACAGGAAACCGCAAATATTGATCATGATGCTGATGAAATTATAAGTAGAATTTACTATGTTAAAGGCCGAAGAAATCANGCGCCTCCAATCACTAGCCCATTGTAACAACACAACGTTTACTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549310" ref_strand="+" ref_description="SGN-E549310 [TUS-69-D21](-)">
      <seq>cagccagaggttatgaagtaatagcacaagctaaacaaagtgttataaacacatgcccaaacgtatctgtatcttgtgctgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttataacgttgcattagggagaagcgatgctagaacggccaacttcagtggtgctataaatcaacttccagctccattcgacaacctaactgtccaaatccagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgcttactgattctgatttgcaacaattggacactactcctactatgttcgacaaagtttactacgataacttaaacagcaaccaaggcataatgttttcagatcaagttttgaccggggatgctacaactgctggctttgtaacggattatagcaacgatgttaatgttttccttggagattttgctgctgccatgatcaagatgggagacttgcccccctccgcaggcgctcaattggaaattcgtgatgtttgtagcagggttaatcccacttcagtggcttctatgtgaaaaattcggaaattttaagtaacttatctcacgactagttgcttcatgttttcttcaaaataaaagaatcactggctccagaatgtggtttggtttttggtatttgttttaatccttatgtaacaaattatatgaaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="61239" stop="23776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60939" g_stop="60821" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="59866" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="790" r_length="671" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59865" i_stop="59766" i_length="100">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.929" a_score="0.55"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59765" g_stop="59717" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="839" r_length="49" r_score="0.551"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E549310" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60939" e_stop="60821"/>
          <exon e_start="60538" e_stop="59866"/>
          <exon e_start="59765" e_stop="59717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCGCGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGG-TTTTGGTATTTGTTTTGTAATCCATCCTATTTTATATGAATATTGTTTTCCTTGTGTGCTAATGTTGGAGCTGATCAGAATAGTTCAATTCGTTATTAAAAATTTAATAATCTGCAAAATAAAAATAGGACTCAAATAGCCTTATGAAAACGAAAATAAGAAAGGTGTGAGGATACC</genome_strand>
        <mrna_strand>CAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTTATAAACACATGCCCAAACGTATCTGTATCTTGTGCTGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAACGTTGCATTAGGGAGAAGCGATGCTAGAACGGCCAACTTCAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACTGTCCAAATCCAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTTACTGATTCTGATTTGCAACAATTGGACACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGCTTTGTAACGGATTATAGCAACGATGTTAATGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCAGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAAGTAACTTATCTCACGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTTGGTATTTG-TTT-TAATCC-TTAT....................................................................................................GTAACAAATTATATGAAAAAAAAAAAAAAAAAAAACTCGAGGGGGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352283" ref_strand="+" ref_description="SGN-E352283 [cTOS-9-A17]">
      <seq>tggatactactcctactatgttcgacaaagtttactacgataacttaaacagcaaccaaggcataatgttttcagatcaagttttgaccggggatgctacaactgctggttttgtaacggattatagcaacgatgtgaacgttttccttggagattttgctgctgccatgatcaagatgggagacttgcccccctccgccggcgctcaattggaaattcgtgatgtttgtagcagggttaatcccacttcagtggcttctatgtgaaaaattccgaaattttaattaacttatctcgcgactaattgcttcatgttttcttcaaaataaaagaatcactggctccagaaagtgggttgggtttgggatttggtttgtaatccatcctattttatatgaataatggtttccctgtgtgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="60552" stop="59532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60252" g_stop="59823" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E352283" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60252" e_stop="59823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCGCGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTGGTATTTGTTTTGTAATCCATCCTATTTTATATGAATATTGTTTTCCTTGTGTGCTAATGTTGGAGC</genome_strand>
        <mrna_strand>TGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCCGAAATTTTAATTAACTTATCTCGCGACTAATTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAAAGTGGGTTGGGTTTGGGATTTGGTTTGTAATCCATCCTATTTTATATGAATAATGGTTTCCCTGTGTGCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349382" ref_strand="+" ref_description="SGN-E349382 [cTOS-1-B3]">
      <seq>ttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattctgatttgcaacaattggatactactcctactatgttcgacaaagtttactacgataacttaaacagcaaccaaggcataatgttttcagatcaagttttgaccggggatgctacaactgctggttttgtaacggattatagcaacgatgtgaacgttttccttggagattttgctgctgccatgatcaagatgggagacttgcccccctccgccggcgctcaattggaaattcgtgatgtttgtagcagggttaatcccacttcagtggcttctatgtgaaaaattcggaaattttaattaacttatctcgcgactagttgcttcatgttttcttcaaaataaaagaatcactggctccagaatgtggtttggttttggtatttgttttgtaatccatcctattttatatgaatattgttttccttgtgtgctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="60635" stop="59532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60335" g_stop="59833" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="516"/>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E349382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60335" e_stop="59833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCGCGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTGGTATTTGTTTTGTAATCCATCCTATTTTATATGAATATTGTTTTCCTTGTGTGCTA</genome_strand>
        <mrna_strand>TTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCGCGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTGGTATTTGTTTTGTAATCCATCCTATTTTATATGAATATTGTTTTCCTTGTGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355442" ref_strand="+" ref_description="SGN-E355442 [cTOS-25-M24]">
      <seq>tccaatgcaactgctccgccacgctaactgattctgatttgcaacaattggatactactcctactatgttcgacaaagtttactacgataacttaaacagcaaccaaggcataatgttttcagatcaagttttgaccggggatgctacaactgctggttttgtaacggattatagcaacgatgtgaacgttttccttggagattttgctgctgccatgatcaagatgggagacttgcccccctccgccggcgctcaattggaaattcgtgatgtttgtagcagggttaatcccacttcagtggcttctatgtgaaaaattcggaaattttaattaacttatctcgcgactagttgcttcatgttttcttcaaaataaaagaatcactggctccagaatgtggtttggttttggtatttgttttgtaatccatcctattttatatgaatattgttttccttgtgtgctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="60600" stop="59532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60300" g_stop="59833" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="480"/>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E355442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60300" e_stop="59833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCGCGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTGGTATTTGTTTTGTAATCCATCCTATTTTATATGAATATTGTTTTCCTTGTGTGCTA</genome_strand>
        <mrna_strand>TCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCGCGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTGGTATTTGTTTTGTAATCCATCCTATTTTATATGAATATTGTTTTCCTTGTGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714761" ref_strand="+" ref_description="SGN-E714761 [FB12BE01]">
      <seq>cacaggggggatacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattctgatttgcaacaattggatactactcctactatgttcgacaaagtttactacgataacttaaacagcaaccaaggcataatgttttcagatcaagttttgaccggggatgctacaactgctggttttgtaacggattatagcaacgatgtgaacgttttccttggagattttgctgctgccatgatcaagatgggagacttgcccccctccgccggcgctcaattggaaattcgtgatgtttgtagcagggttaatcccacttcagtggcttctatgtgaaaaattcggaaattttaattaacttatctcacgactagttgcttcatgttttcttcaaaataaaagaatcactggctccagaatgtggtttggttttggtatttgttttgtaatccatcctattttatatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="61270" stop="59552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60969" g_stop="60821" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="157" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="59845" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="851" r_length="694" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E714761" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60969" e_stop="60821"/>
          <exon e_start="60538" e_stop="59845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCGCGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTGGTATTTGTTTTGTAATCCATCCTATTTTATATGAATATTGTTTT</genome_strand>
        <mrna_strand>GGATACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCACGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTGGTATTTGTTTTGTAATCCATCCTATTTTATATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703582" ref_strand="+" ref_description="SGN-E703582 [FA21DF03]">
      <seq>gagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgttagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattctgatttgcaacaattggatactactcctactatgttcgacaaagtttactacgataacttaaacagcaaccaaggcataatgttttcagatcaagttttgaccggggatgctacaactgctggttttgtaacggattatagcaacgatgtgaacgttttccttggagattttgctgctgccatngatcagatgggagacttgccccctccgccggcgctcaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62331" stop="59740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62031" g_stop="61881" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="349" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60040" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="847" r_length="498" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E703582" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62031" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCAT-GATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGG</genome_strand>
        <mrna_strand>GAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGTTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATNGATC-AGATGGGAGACTTG-CCCCCTCCGCCGGCGCTCAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303928" ref_strand="+" ref_description="SGN-E303928 [cLEX-4-M16]">
      <seq>gccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacaccatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattctgatttgcaacaattggatactactcctactatgttcgacaaagtttactacgataacttaaacagcaaccaaggcataatgttttcagatcaagttttgaccggggatgctacaactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="61246" stop="59847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60946" g_stop="60821" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60538" g_stop="60147" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="519" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E303928" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60946" e_stop="60821"/>
          <exon e_start="60538" e_stop="60147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACA-CATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGC</genome_strand>
        <mrna_strand>GCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACCATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720506" ref_strand="+" ref_description="SGN-E720506 [FC11AA10]">
      <seq>gatccctatcgaaagcctttaatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattctgatttgcaacaattggatactactcctactatgttcgacaaagttttactacgatacttaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62578" stop="59903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62279" g_stop="61881" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="597" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60203" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="933" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E720506" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62279" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCTATCGAAAGCCTTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAG-TTTACTACGATAACTTAAAC</genome_strand>
        <mrna_strand>GATCCCTATCGAAAGCCTTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTTACTACGAT-ACTTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736836" ref_strand="+" ref_description="SGN-E736836 [LC07CA09]">
      <seq>aatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctcccgcacgctaactgattctgatttgcaacaattggatactactcctactatgttcgacaaagtttactacgataacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62559" stop="59905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62259" g_stop="61881" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="577" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60205" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="911" r_length="334" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E736836" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62259" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAA</genome_strand>
        <mrna_strand>AATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCCGCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735594" ref_strand="+" ref_description="SGN-E735594 [LC02BA05]">
      <seq>aatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattctgatttgncacaattggatactactcctactatgttcgnacaagtttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62559" stop="59916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62259" g_stop="61881" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="577" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60216" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="900" r_length="323" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E735594" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62259" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTA</genome_strand>
        <mrna_strand>AATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGNCACAATTGGATACTACTCCTACTATGTTCGNACAAGTTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736174" ref_strand="+" ref_description="SGN-E736174 [LC04CE11]">
      <seq>aatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacacacggtaggtttcgccaggtgttccacagtttgcaccagcgggtacgttaatcctgccgcacaaactccaatgcactgctccgccacgctaactgattctgatttgcaacaattggatactactcctactatgttcgacaaagtttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62559" stop="59916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62259" g_stop="61881" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="577" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60216" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="900" r_length="323" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E736174" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62259" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCAC-AACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTA</genome_strand>
        <mrna_strand>AATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGGTACGTTAATCCTGCCGCACAAACTCCAATGC-ACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701263" ref_strand="+" ref_description="SGN-E701263 [FA15BH11]">
      <seq>atttgtttcctcgatagacatttaaattaagtgatgggttttcgcttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattctgattttgcacaattggatactactcctactatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62558" stop="59931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62258" g_stop="61881" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="576" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60231" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="884" r_length="308" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E701263" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62258" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTT</genome_strand>
        <mrna_strand>ATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGCTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTTGCACAATTGGATACTACTCCTACTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735527" ref_strand="+" ref_description="SGN-E735527 [LC02AA06]">
      <seq>caatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattctgatttggccacattggatactactcctactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62559" stop="59934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62260" g_stop="61881" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="578" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60234" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="883" r_length="305" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E735527" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62260" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTAT</genome_strand>
        <mrna_strand>CAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGGCCACATTGGATACTACTCCTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717855" ref_strand="+" ref_description="SGN-E717855 [FC02DG06]">
      <seq>gggcgattggcggccaatcggccgaattatcgaaagcctttaatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacaagcagttgtggacagtgctattgatgcaaaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattctgatttgcaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62573" stop="59954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62273" g_stop="61881" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="420" r_length="393" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="618" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60254" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="903" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E717855" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62273" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGAAAGCCTTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAA</genome_strand>
        <mrna_strand>TATCGAAAGCCTTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACAAGCAGTTGTGGACAGTGCTATTGATGCAAAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305951" ref_strand="+" ref_description="SGN-E305951 [cLEY-17-E6]">
      <seq>aactccggaggcatgcgttttctcagctgtacgagcaggggtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctccgtgaaatggttgcactagctggtgcacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62298" stop="60064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61998" g_stop="61881" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="316" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60364" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="491" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E305951" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61998" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACA</genome_strand>
        <mrna_strand>AACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGGGGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737316" ref_strand="+" ref_description="SGN-E737316 [LC09BB05]">
      <seq>caatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcaccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62559" stop="60094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62260" g_stop="61881" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="578" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60394" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="723" r_length="145" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E737316" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62260" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCC</genome_strand>
        <mrna_strand>CAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334354" ref_strand="+" ref_description="SGN-E334354 [cTOD-21-J5]">
      <seq>tttaatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagcttcattcgacaacctaacagtccaaatacagaaattcagcgacaaaaatttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62562" stop="60098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62262" g_stop="61881" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="580" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60398" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="721" r_length="141" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E334354" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62262" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACC</genome_strand>
        <mrna_strand>TTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTTCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333181" ref_strand="+" ref_description="SGN-E333181 [cTOD-19-P20]">
      <seq>tttaatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattangaaggacaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaactttcagctccattcgacaacctaacagtccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62562" stop="60126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62262" g_stop="61881" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="580" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60426" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="693" r_length="113" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E333181" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62262" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGG-AGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAAT</genome_strand>
        <mrna_strand>TTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTANGAAGGAC-AACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTTCAGCTCCATTCGACAACCTAACAGTCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722096" ref_strand="+" ref_description="SGN-E722096 [FC16AG06]">
      <seq>ggggatccgatgatccctatcgaaagcctttaatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcaaaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaattaggaggacaaacttatagcgttgcattagggagaagcgatgctagaactgccaactttagtggtgctataaatcaacttccagctccattcgacaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62581" stop="60138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62278" g_stop="61881" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="410" r_length="398" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="608" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60438" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="709" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E722096" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62278" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCTATCGAAAGCCTTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCT</genome_strand>
        <mrna_strand>ATCCCTATCGAAAGCCTTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAAAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355819" ref_strand="+" ref_description="SGN-E355819 [cLHT-12-J10]">
      <seq>tttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtattgctatttataaaaatacttatgaagccatcataatgaataatggttcactcctcaaaaatgttcctccgaatttcgattcgttggaatcaggcgtagcgagtattttaactttaaataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttactggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgttataaacacatgcccaaacgtatctgtatcttgtgctgacatattagctagtgctgctcgtgattctgttgctaaattaggaggacaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62553" stop="60516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62253" g_stop="61881" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="568" r_length="198" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60538" g_stop="60524" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="583" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E355819" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62253" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
          <exon e_start="60538" e_stop="60524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAAGTAAGTCTATCATTCATTTTACAGTTTGATAATTTCTACCAAAATTAATTACGAATAGTAACAAATGGATATTTAATCAAACTCTAAAGTCATCGTGGAAGTTGAGAAATGTTCAAAGAGATGACCAAATTCCACATCCACAATCAATGTGGAAATTGTGACACCTCGCCTGTGGGCGTCTAACATTTAATAGATGAAGCATTGTATTTATTTAGGTTATGATGATATGACAAAGAAATTGACTTGGGCTAACTCAAACTCTGTTTTATTGGTATTTGACAGTTAGGAGGACAAACT</genome_strand>
        <mrna_strand>TTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTATTGCTATTTATAAAAATACTTATGAAGCCATCATAATGAATAATGGTTCACTCCTCAAAAATGTTCCTCCGAATTTCGATTCGTTGGAATCAGGCGTAGCGAGTATTTTAA-CTT-TA-AATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACTGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTTATAAACACATGCCCAAACGTATCTGTATCTTGTGCTGACATATTAGCTAGTGCTGCTCGTGATTCTGTTGCTAAA..........................................................................................................................................................................................................................................................................................TTAGGAGGACAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333128" ref_strand="+" ref_description="SGN-E333128 [cTOD-19-N19]">
      <seq>tttaatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattgctgctcgtgattctgttgctaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62562" stop="60519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62262" g_stop="61881" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60821" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="580" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E333128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62262" e_stop="61881"/>
          <exon e_start="61018" e_stop="60821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA</genome_strand>
        <mrna_strand>TTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329370" ref_strand="+" ref_description="SGN-E329370 [cTOD-2-C10]">
      <seq>tttaatttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagccagaggttatgaagtaatagcacaagctaaacaaagtgtcataaacacatgccccaacgtatctgtatcttgtgccgacatattagctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62562" stop="60544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62262" g_stop="61881" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60844" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="557" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E329370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62262" e_stop="61881"/>
          <exon e_start="61018" e_stop="60844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTG</genome_strand>
        <mrna_strand>TTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E214553" ref_strand="+" ref_description="SGN-E214553 [cLEC-79-D11]">
      <seq>tttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcaggcgtagccagtattttaaccttaaataataataagaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcagctgtacgagcagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttcgttgatgggttgtgatggaggtattctgctagatgatattaatggaacatttacaggggaacaaaactcaccacccaacgccaactcagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62557" stop="60635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62257" g_stop="61881" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60935" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="462" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E214553" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62257" e_stop="61881"/>
          <exon e_start="61018" e_stop="60935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT-GTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCC</genome_strand>
        <mrna_strand>TTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215074" ref_strand="+" ref_description="SGN-E215074 [cLEC-78-O12]">
      <seq>tttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttttgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacggttcactcctcaaaaatgtttctccagatttcgattcgttggaatcacgcgtagccagtattttaaccttaaataataataagaagagaaattccgacaagtacttgagacagcaactaactccggaggcatgcgttttctcaactgtaccaacagttgtggacagtgctattgatgcagaaactcgcatgggagcttctctcattcgtctccactttcatgactgcttccttgatgggtgtgatggaaggattctgccagaagatattaatggaacatttaccaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62557" stop="60668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62257" g_stop="61881" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.630" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61018" g_stop="60967" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="429" r_length="52" r_score="0.865"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E215074" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62257" e_stop="61881"/>
          <exon e_start="61018" e_stop="60967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGATGTAAATATATATTTCCTTCGCTCTTTTTTTATCGTATTTGATTATGCACAAAATTTTATTTGAAGTCACTTAAATATTTTATGCTTGTTCAAACAAATTTGAAAATTCTTTCAGTTTTTCCTGAACTCACAATGCATGCAGTCAATTACTTTACTAGGGAAAATGCACAAGTACATTCTCAACCTATGTCCGAAATTACAGAGACACACTTATATTATACTAAGGTTCTATTACTCCCCTGAACTTATTTTATAAGTAATATTCTACCTAGCTTGAAAAAAAAGTCAACCTGCGTAAGGCCAACAAGATAGTGTCACGTAGGCCGAAAAAAAGTAAAAAATTATTAATAAAATAAGTTAAGTAAAATAATAGGACCTTAGTATAGTATAAGCGTGTCTCTAAAATTTCGGGTATAGGTTAAAGGGACTACTTAAATTGAAATGAAAAGAGTAGAGGGATATCATTTTTTAAGACAGGCTAAAAAGAGTACAATGTTAGGTGTAGCATATTAATTGAATCCGAGTCCTTTTCCTCTTATTAATTAAACCTGGCCGTATGATCATATTTTTCTTTCATAAATAAATAAATTGTTGAAAGATCTGAGGCTACGAACTCCAAATTAAAATTATAATGCCATACTTGTTGTTTTAAATCGCAAATATTTAAAAAAAAAATACTTTTTCTTTTGAACTCCCCGTCAAGTAAAATATCTTCGCACACATTTTGCTTCTACATGAACTCCAAAAACTTTGAAAAGTCTAGTCTGCTTTCCAGTTTTATTTTATTTTAGATCTTCTGCAGTTGATTTATGTATTTGACTAATTATACCTCTCTCGTTTTCTTTTTTATTACGAAAAATAAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGG</genome_strand>
        <mrna_strand>TTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCACGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCCGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAACTGTACCAACAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCCTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGTGATGGAAGGATTCTGCCAGAAGATATTAATGGAACATTTACCAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208918" ref_strand="+" ref_description="SGN-E208918 [cLEC-51-N16]">
      <seq>tttgtttcctcgatagacatttaaattaagtgatgggttttcgtttgagtcatttgagtcttgcattgagttctgtggcacttgcacttgcaggtgttgctatttatagaaatacttatgaagccatcatcatgaaaaacagttcactcctcaaaaatgtttctccaaatttccattcgttggaatcacgcgtaaccagtattttaaccttaaataataataacaagagaaattcagacaagtacttgagacagcaactaactccggaggcatgcgttttctcaactgttcgagcagttgtggacagagctattgatgcagaaactcgcatgggagcttctctcattcgtttccactttcatgactgcttcattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="62557" stop="61580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62257" g_stop="61881" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E208918" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62257" e_stop="61881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT</genome_strand>
        <mrna_strand>TTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTCTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACAGTTCACTCCTCAAAAATGTTTCTCCAAATTTCCATTCGTTGGAATCACGCGTAACCAGTATTTTAACCTTAAATAATAATAACAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAACTGTTCGAGCAGTTGTGGACAGAGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTTTCCACTTTCATGACTGCTTCATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350198" ref_strand="+" ref_description="SGN-E350198 [cTOS-4-I24]">
      <seq>cggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattccgatttgcaacaattggatacaactcctgctgtgttcgacaaagtttactatgataacttaaacaacaaccaagggataatgttctcggatcaagttttgactgggaatactacaactgctggttttgtaaccacttatagcaacaatgttactgtttttcttgaagattttgctgctgctatgatcaaaatggggaatttacctccctccgctggcgctcaattggaaattcgcgatgtttgcagcagggttaatcccacttctgtggcttctatgtgaaaaatttcggaaattttaagtagcttttatcttactatttgtcgcatcatgttttcatctttttcagtattgatgcaataatatatatgtccctatgttcgcagtgtttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="64995" stop="23779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64695" g_stop="64229" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E350198" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64695" e_stop="64229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAACCAAGGGATAATGTTCTCGGATCAAGTTTTGACTGGGAATACTACAACTGCTGGTTTTGTAACCACTTATAGCAACAATGTTACTGTTTTTCTTGAAGATTTTGCTGCTGCTATGATCAAAATGGGGAATTTACCTCCCTCCGCTGGCGCTCAATTGGAAATTCGCGATGTTTGCAGCAGGGTTAATCCCACTTCTGTGGCTTCTATGTGAAAAATTTCGGAAATTTTAAGTAGCTTTTATCTTACTATTTGTCGCATCATGTTTTCATCTTTTTCAGTATTGATGCAATAATATATATGTCCCTATGTTCGCAGTGTTTTTAATCCAATTTATTCTT</genome_strand>
        <mrna_strand>CGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAACCAAGGGATAATGTTCTCGGATCAAGTTTTGACTGGGAATACTACAACTGCTGGTTTTGTAACCACTTATAGCAACAATGTTACTGTTTTTCTTGAAGATTTTGCTGCTGCTATGATCAAAATGGGGAATTTACCTCCCTCCGCTGGCGCTCAATTGGAAATTCGCGATGTTTGCAGCAGGGTTAATCCCACTTCTGTGGCTTCTATGTGAAAAATTTCGGAAATTTTAAGTAGCTTTTATCTTACTATTTGTCGCATCATGTTTTCATCTTTTTCAGTATTGATGCAATAATATATATGTCCCTATGTTCGCAGTGTTTTTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357133" ref_strand="+" ref_description="SGN-E357133 [cTOS-22-J18]">
      <seq>tggcactagctggcgcgcacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattccgatttgcaacaattggatacaactcctgctgtgttcgacaaagtttactatgataacttaaacaacaaccaagggataatgttctcggatcaagttttgactgggaatactacaactgctggttttgtaaccacttatagcaacaatgttactgtttttcttgaagattttgctgctgctatgatcaaaatggggaatttacctccctccgctggcgctcaattggaaattcgcgatgtttgcagcagggttaatcccacttctgtggcttctatgtgaaaaatttcggaaattttaagtagcttttatcttactatttgtcgcatcatgttttcatctttttcagtattgatgcaataatatatatgtccctatgttcgcagtgtttttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="65053" stop="63941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64753" g_stop="64241" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E357133" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64753" e_stop="64241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAACCAAGGGATAATGTTCTCGGATCAAGTTTTGACTGGGAATACTACAACTGCTGGTTTTGTAACCACTTATAGCAACAATGTTACTGTTTTTCTTGAAGATTTTGCTGCTGCTATGATCAAAATGGGGAATTTACCTCCCTCCGCTGGCGCTCAATTGGAAATTCGCGATGTTTGCAGCAGGGTTAATCCCACTTCTGTGGCTTCTATGTGAAAAATTTCGGAAATTTTAAGTAGCTTTTATCTTACTATTTGTCGCATCATGTTTTCATCTTTTTCAGTATTGATGCAATAATATATATGTCCCTATGTTCGCAGTGTTTTTAATC</genome_strand>
        <mrna_strand>TGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAACCAAGGGATAATGTTCTCGGATCAAGTTTTGACTGGGAATACTACAACTGCTGGTTTTGTAACCACTTATAGCAACAATGTTACTGTTTTTCTTGAAGATTTTGCTGCTGCTATGATCAAAATGGGGAATTTACCTCCCTCCGCTGGCGCTCAATTGGAAATTCGCGATGTTTGCAGCAGGGTTAATCCCACTTCTGTGGCTTCTATGTGAAAAATTTCGGAAATTTTAAGTAGCTTTTATCTTACTATTTGTCGCATCATGTTTTCATCTTTTTCAGTATTGATGCAATAATATATATGTCCCTATGTTCGCAGTGTTTTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211851" ref_strand="+" ref_description="SGN-E211851 [cLEC-66-H22]">
      <seq>aactcagtcagaggctttgaagtgatagcacaagctaaacaaagtgttgtagattcatgccccaacatatctgtatcttgtgctgatattttagctattgctgctcgtgattcccttgctaaattaggaggacaaacttataccgttgcactagggagaagcgatgctacaacagccaactttagtggtgctataaatcaacttccagctccatccgacaacctaactgttcaaatacagaaattcagcgacaaaaatttcactgtccgtgaaatggtggcactagctggcgcgcacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattccgatttgcaacaattggatacaactcctgctgtgttcgacaaagtttactatgataacttaaacaacaaccaagggataatgttctcggatcaagttttgactgggaatactacaactgctggttttgtaaccacttatagcaacaatgttactgtttttcttgaagattttgctgctgctatgatcaaaatggggaatttacctccctccgctggcgctcaattggaaattcgcgatgtttgcagcagggttaatcccacttctgtggcttctatgtgaaaaatttcggaaattttaagtagcttttatcttactatttgtcgcatcatgttttcatctttttcagtattgatgcaataatatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="65455" stop="63967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65155" g_stop="65033" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65032" i_stop="64908" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64907" g_stop="64267" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="764" r_length="641" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E211851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65155" e_stop="65033"/>
          <exon e_start="64907" e_stop="64267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAAGTAAGTCCATTGCTCAATTTTTAGTCAAAGTTACTATTTTTAATTTAGCTTTACACTACATGTTTAATTAACTTATATCATATGATCAATAGTAAGTTAAACTCTATTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAACCAAGGGATAATGTTCTCGGATCAAGTTTTGACTGGGAATACTACAACTGCTGGTTTTGTAACCACTTATAGCAACAATGTTACTGTTTTTCTTGAAGATTTTGCTGCTGCTATGATCAAAATGGGGAATTTACCTCCCTCCGCTGGCGCTCAATTGGAAATTCGCGATGTTTGCAGCAGGGTTAATCCCACTTCTGTGGCTTCTATGTGAAAAATTTCGGAAATTTTAAGTAGCTTTTATCTTACTATTTGTCGCATCATGTTTTCATCTTTTTCAGTATTGATGCAATAATATATATG</genome_strand>
        <mrna_strand>AACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAA.............................................................................................................................TTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAACCAAGGGATAATGTTCTCGGATCAAGTTTTGACTGGGAATACTACAACTGCTGGTTTTGTAACCACTTATAGCAACAATGTTACTGTTTTTCTTGAAGATTTTGCTGCTGCTATGATCAAAATGGGGAATTTACCTCCCTCCGCTGGCGCTCAATTGGAAATTCGCGATGTTTGCAGCAGGGTTAATCCCACTTCTGTGGCTTCTATGTGAAAAATTTCGGAAATTTTAAGTAGCTTTTATCTTACTATTTGTCGCATCATGTTTTCATCTTTTTCAGTATTGATGCAATAATATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207065" ref_strand="+" ref_description="SGN-E207065 [cLEC-30-M24]">
      <seq>aactcagtcagaggctttgaagtgatagcacaagctaaacaaagtgttgtagattcatgccccaacatatctgtatcttgtgctgatattttagctattgctgctcgtgattcccttgctaaattaggaggacaaacttataccgttgcactagggagaagcgatgctacaacagccaactttagtggtgctataaatcaacttccagctccatccgacaacctaactgttcaaatacagaaattcagcgacaaaaatttcactgtccgtgaaatggtggcactagctggcgcgcacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactgattccgatttgcaacaattggatacaactcctgctgtgttcgacaaagtttactatgataacttaaacaacaaccaagggataatgttctcggatcaagttttgactgggaatactacaactgctggttttgtaaccacttatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="65455" stop="64194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65155" g_stop="65033" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65032" i_stop="64908" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64907" g_stop="64494" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="537" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E207065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65155" e_stop="65033"/>
          <exon e_start="64907" e_stop="64494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAAGTAAGTCCATTGCTCAATTTTTAGTCAAAGTTACTATTTTTAATTTAGCTTTACACTACATGTTTAATTAACTTATATCATATGATCAATAGTAAGTTAAACTCTATTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAACCAAGGGATAATGTTCTCGGATCAAGTTTTGACTGGGAATACTACAACTGCTGGTTTTGTAACCACTTATAGC</genome_strand>
        <mrna_strand>AACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAA.............................................................................................................................TTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAACCAAGGGATAATGTTCTCGGATCAAGTTTTGACTGGGAATACTACAACTGCTGGTTTTGTAACCACTTATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704224" ref_strand="+" ref_description="SGN-E704224 [FA23CG08]">
      <seq>tagacatttaataatttcttttaagtgatgggttttcgtttgagccttttgagccttgcggtgagccttgtggcacttgcacttgcaggtgttgccatttatagaaatacttatgaggccatgatcatgaataacggatcactcctccaaaatatctctccagatatcgattcgttggaatcaggcgaagtcagtattttaattttaaatgataagaagaaaaattcagacaaatatttgagtcagcaattaactcaggagtcatgcgttttctcagctgtgaaaggagttgtggacagtgccattgataatgaaacgcgcatgggagcttctctcattcgtctacatttccatgactgctttgttgatggttgtgatggaggtattctgctagatgatattaatggaacattcaccggggaacaaaactcaccacccaacaacaactcagtcagaggctttgaagtgatagcacaagctaaacaaagtgttgtagattcatgccccaacatatctgtatcttgtgctgatattttagctattgctgctcgtgattctcttgctaaattaggaggacaaacttataccgttgcactagggagaagcgatgctacaacagccaactttagtggtgctataaatcaacttccagctccatccgacaacctaactgttcaaatacagaaattcagcgacaaaaatttcactgtccgtgaaatggtggcactagctggcgcgcacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaatccctgccgcacaactccaatgcaactgctccgccacgctaactgattccgatttgcaacaattggatacaactcttgctgtgttccgacaagtttactatgataacttaaacaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="66894" stop="64266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66594" g_stop="66227" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66226" i_stop="65231" i_length="996">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65230" g_stop="65033" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="567" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65032" i_stop="64908" i_length="125">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64907" g_stop="64566" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="910" r_length="343" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E704224" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66594" e_stop="66227"/>
          <exon e_start="65230" e_stop="65033"/>
          <exon e_start="64907" e_stop="64566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACATTTAATAATTTC-TTTAAGTGATGGGTTTTCGTTTGAGCCTTTTGAGCCTTGCGGTGAGCCTTGTGGCACTTGCACTCGCAGGTGTTGCCATTTATAGAAATACTTATGAGGCCATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGATGTAAATATTCTTTCGTCCTTTTTCTCCCGCTCAATATTTTATAATAATGTAATTTTAAGGTTGATATAATCGTATGAATAAGTATTTACTTATTTTTTATCATAAATTTTAAATTTTTTAATTTTAACTTTTAAAATCTCTTACAACTAAACGCTTAATATAAAAATAGAAAGATCGGATTTTTTATTTTATTTTTGAGGACATATTAAAAAAATAAAACAGTATGTTAGGTGTAGTATATAAATTGAATCCGAGTCCTCCTTTCTCTTATTAAAATTAAAAGTAAAAACCTGGCTCCATGGACCATGGTCATATAATATTATTTAATGTAAATATGTGTAAGTGGTCCGAAAGGAAAGTGATCCGTAAAATTATTTGAAAAATCTGACGGAACGAATTTCAAAACATGCTTATGAAAACTGTGTGGGTTTTTATTAGTGTAGTAGTTGTAAAGTTGCATCATGAATGGTACCATCTTCTTGTAATTTGTGAAATGAACAGTTTCTTATTAGTTTTTTCTGCCTTACAACTCTTTTTTATCAGCCACTTGGCTAATTTTGGGCAACTTTATCTCCTTTATCTCACTCATCACTTTCTCTTTTGCTCGATTCTCTTTGCATATTTTAGATATATATAAATCTAGTCCCATTTTTATATACCTTAAATAAATAGTCTGTTTTACTCATTTTCATTCTATCTAGCATGCTCTTTTTCTATATTAATATATTGATAAAAAAAATATATGATTTTACAATATCTAACTTAAAATCTAATATAAAATTATTGATTAGTAAGACAATATTTAATTTGTTTGAACTATAAGGAGAACTAGTAAATATAGTAGGATTATTTATCTAATTAGGTTTGTTTTTTCTTTAAATAAATTCATGTTAAATTAAACCACATCCATATAAATTGAAGCAATAGAGTAACTAATTATGTATACATATAATTGACTAATTACAGTTATGTTTTTGGTTTGGAAAAAAAAAACAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAAGTAAGTCCATTGCTCAATTTTTAGTCAAAGTTACTATTTTTAATTTAGCTTTACACTACATGTTTAATTAACTTATATCATATGATCAATAGTAAGTTAAACTCTATTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAAT-CCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAAC</genome_strand>
        <mrna_strand>TAGACATTTAATAATTTCTTTTAAGTGATGGGTTTTCGTTTGAGCCTTTTGAGCCTTGCGGTGAGCCTTGTGGCACTTGCACTTGCAGGTGTTGCCATTTATAGAAATACTTATGAGGCCATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCATGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCTCTTGCTAAA.............................................................................................................................TTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCTTGCTGTGTTCCGACAAGTTTACTATGATAACTTAAACAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702007" ref_strand="+" ref_description="SGN-E702007 [FA17CC01]">
      <seq>ctaaggcctctgtttcttccaatagacatttaataatttcttttaagtgatgggttttcgtttgagccttttgagccttgcggtgagccttgtggcacttgcacttgcaggtgttgccatttatagaaatacttatgaggccatgatcatgaataacggatcactcctccaaaatatctctccagatatcgattcgttggaatcaggcgaagtcagtattttaattttaaatgataagaagaaaaattcagacaaatatttgagtcagcaattaactcaggagtcatgcgttttctcagctgtgaaaggagttgtggacagtgccattgataatgaaacgcgcatgggagcttctctcattcgtctacatttccatgactgctttgttgatggttgtgatggaggtattctgctagatgatattaatggaacattcaccggggaacaaaactcaccacccaacaacaactcagtcagaggctttgaagtgatagcacaagctaaacaaagtgttgtagattcatgccccaacatatctgtatcttgtgctgatattttagctattgctgctcgtgattctcttgctaaattaggaggacaaacttataccgttgcactagggagaagcgatgctacaacagccaactttagtggtgctataaatcaacttccagctccatccgacaacctaactgttcaaatacagaaattcagcgacaaaaatttcactgtccgtgaaatggtggcactagctggcgcgcacacggtaggtttcgccagggtgttccacagtttgcaccagcggtaacgttaatcctgccgcacaactccaatgcaactgctccgccacgctaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="66917" stop="64340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66617" g_stop="66227" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66226" i_stop="65231" i_length="996">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65230" g_stop="65033" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="589" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65032" i_stop="64908" i_length="125">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64907" g_stop="64640" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="858" r_length="269" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E702007" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66617" e_stop="66227"/>
          <exon e_start="65230" e_stop="65033"/>
          <exon e_start="64907" e_stop="64640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGGCCTCTGTTTCTTCCAAATAGACATTTAATAATTTC-TTTAAGTGATGGGTTTTCGTTTGAGCCTTTTGAGCCTTGCGGTGAGCCTTGTGGCACTTGCACTCGCAGGTGTTGCCATTTATAGAAATACTTATGAGGCCATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGATGTAAATATTCTTTCGTCCTTTTTCTCCCGCTCAATATTTTATAATAATGTAATTTTAAGGTTGATATAATCGTATGAATAAGTATTTACTTATTTTTTATCATAAATTTTAAATTTTTTAATTTTAACTTTTAAAATCTCTTACAACTAAACGCTTAATATAAAAATAGAAAGATCGGATTTTTTATTTTATTTTTGAGGACATATTAAAAAAATAAAACAGTATGTTAGGTGTAGTATATAAATTGAATCCGAGTCCTCCTTTCTCTTATTAAAATTAAAAGTAAAAACCTGGCTCCATGGACCATGGTCATATAATATTATTTAATGTAAATATGTGTAAGTGGTCCGAAAGGAAAGTGATCCGTAAAATTATTTGAAAAATCTGACGGAACGAATTTCAAAACATGCTTATGAAAACTGTGTGGGTTTTTATTAGTGTAGTAGTTGTAAAGTTGCATCATGAATGGTACCATCTTCTTGTAATTTGTGAAATGAACAGTTTCTTATTAGTTTTTTCTGCCTTACAACTCTTTTTTATCAGCCACTTGGCTAATTTTGGGCAACTTTATCTCCTTTATCTCACTCATCACTTTCTCTTTTGCTCGATTCTCTTTGCATATTTTAGATATATATAAATCTAGTCCCATTTTTATATACCTTAAATAAATAGTCTGTTTTACTCATTTTCATTCTATCTAGCATGCTCTTTTTCTATATTAATATATTGATAAAAAAAATATATGATTTTACAATATCTAACTTAAAATCTAATATAAAATTATTGATTAGTAAGACAATATTTAATTTGTTTGAACTATAAGGAGAACTAGTAAATATAGTAGGATTATTTATCTAATTAGGTTTGTTTTTTCTTTAAATAAATTCATGTTAAATTAAACCACATCCATATAAATTGAAGCAATAGAGTAACTAATTATGTATACATATAATTGACTAATTACAGTTATGTTTTTGGTTTGGAAAAAAAAAACAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAAGTAAGTCCATTGCTCAATTTTTAGTCAAAGTTACTATTTTTAATTTAGCTTTACACTACATGTTTAATTAACTTATATCATATGATCAATAGTAAGTTAAACTCTATTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCA-GGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTG</genome_strand>
        <mrna_strand>CTAAGGCCTCTGTTTCTTCC-AATAGACATTTAATAATTTCTTTTAAGTGATGGGTTTTCGTTTGAGCCTTTTGAGCCTTGCGGTGAGCCTTGTGGCACTTGCACTTGCAGGTGTTGCCATTTATAGAAATACTTATGAGGCCATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCATGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCTCTTGCTAAA.............................................................................................................................TTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204594" ref_strand="+" ref_description="SGN-E204594 [cLEC-14-C17]">
      <seq>ataacggatcactcctccaaaatatctctccagatatcgattcgttggaatcaggcgaagtcagtattttaattttaaatgataagaagaaaaattcagacaaatatttgagtcagcaattaactcaggagtcttgcgttttctcagctgtgaaaggagttgtggacagtgccattgataatgaaacgcgcatgggagcttctctcattcgtctacatttccatgactgctttgttgatggttgtgatggaggtattctgctagatgatattaatggaacattcaccggggaacaaaactcaccacccaacaacaactcagtcagaggctttgaagtgatagcacaagctaaacaaagtgttgtagattcatgccccaacatatctgtatcttgtgctgatattttagctattgctgctcgtgattcccttgctaaattaggaggacaaacttataccgttgcactagggagaagcgatgctacaacagccaactttagtggtgctataaatcaacttccagctccatccgacaacctaactgttcaaatacagaaattcagcgacaaaaatttcactgtccgtgaaatggtggcactagctggcgcgcacacggtaggtttcgccaggtgttccacagtttgcaccagcggtaacgttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="66765" stop="64383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66465" g_stop="66227" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66226" i_stop="65231" i_length="996">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65230" g_stop="65033" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="437" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65032" i_stop="64908" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64907" g_stop="64683" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="662" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E204594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66465" e_stop="66227"/>
          <exon e_start="65230" e_stop="65033"/>
          <exon e_start="64907" e_stop="64683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGATGTAAATATTCTTTCGTCCTTTTTCTCCCGCTCAATATTTTATAATAATGTAATTTTAAGGTTGATATAATCGTATGAATAAGTATTTACTTATTTTTTATCATAAATTTTAAATTTTTTAATTTTAACTTTTAAAATCTCTTACAACTAAACGCTTAATATAAAAATAGAAAGATCGGATTTTTTATTTTATTTTTGAGGACATATTAAAAAAATAAAACAGTATGTTAGGTGTAGTATATAAATTGAATCCGAGTCCTCCTTTCTCTTATTAAAATTAAAAGTAAAAACCTGGCTCCATGGACCATGGTCATATAATATTATTTAATGTAAATATGTGTAAGTGGTCCGAAAGGAAAGTGATCCGTAAAATTATTTGAAAAATCTGACGGAACGAATTTCAAAACATGCTTATGAAAACTGTGTGGGTTTTTATTAGTGTAGTAGTTGTAAAGTTGCATCATGAATGGTACCATCTTCTTGTAATTTGTGAAATGAACAGTTTCTTATTAGTTTTTTCTGCCTTACAACTCTTTTTTATCAGCCACTTGGCTAATTTTGGGCAACTTTATCTCCTTTATCTCACTCATCACTTTCTCTTTTGCTCGATTCTCTTTGCATATTTTAGATATATATAAATCTAGTCCCATTTTTATATACCTTAAATAAATAGTCTGTTTTACTCATTTTCATTCTATCTAGCATGCTCTTTTTCTATATTAATATATTGATAAAAAAAATATATGATTTTACAATATCTAACTTAAAATCTAATATAAAATTATTGATTAGTAAGACAATATTTAATTTGTTTGAACTATAAGGAGAACTAGTAAATATAGTAGGATTATTTATCTAATTAGGTTTGTTTTTTCTTTAAATAAATTCATGTTAAATTAAACCACATCCATATAAATTGAAGCAATAGAGTAACTAATTATGTATACATATAATTGACTAATTACAGTTATGTTTTTGGTTTGGAAAAAAAAAACAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAAGTAAGTCCATTGCTCAATTTTTAGTCAAAGTTACTATTTTTAATTTAGCTTTACACTACATGTTTAATTAACTTATATCATATGATCAATAGTAAGTTAAACTCTATTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAAT</genome_strand>
        <mrna_strand>ATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAA.............................................................................................................................TTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204587" ref_strand="+" ref_description="SGN-E204587 [cLEC-14-A13]">
      <seq>catgatcatgaataacggatcactcctccaaaatatctctccagatatcgattcgttggaatcaggcgaagtcagtattttaattttaaatgataagaagaaaaattcagacaaatatttgagtcagcaattaactcaggagtcttgcgttttctcagctgtgaaaggagttgtggacagtgccattgataatgaaacgcgcatgggagcttctctcattcgtctacatttccatgactgctttgttgatggttgtgatggaggtattctgctagatgatattaatggaacattcaccggggaacaaaactcaccacccaacaacaactcagtcagaggctttgaagtgatagcacaagctaaacaaagtgttgtagattcatgccccaacatatctgtatcttgtgctgatattttagctattgctgctcgtgattcccttgctaaattaggaggacaaacttataccgttgcactagggagaagcgatgctacaacagccaactttagtggtgctataaatcaacttccagctccatccgacaacctaactgttcaaatacagaaattcagcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="66776" stop="64480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66476" g_stop="66227" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66226" i_stop="65231" i_length="996">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65230" g_stop="65033" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="448" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65032" i_stop="64908" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64907" g_stop="64780" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="576" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E204587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66476" e_stop="66227"/>
          <exon e_start="65230" e_stop="65033"/>
          <exon e_start="64907" e_stop="64780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGATGTAAATATTCTTTCGTCCTTTTTCTCCCGCTCAATATTTTATAATAATGTAATTTTAAGGTTGATATAATCGTATGAATAAGTATTTACTTATTTTTTATCATAAATTTTAAATTTTTTAATTTTAACTTTTAAAATCTCTTACAACTAAACGCTTAATATAAAAATAGAAAGATCGGATTTTTTATTTTATTTTTGAGGACATATTAAAAAAATAAAACAGTATGTTAGGTGTAGTATATAAATTGAATCCGAGTCCTCCTTTCTCTTATTAAAATTAAAAGTAAAAACCTGGCTCCATGGACCATGGTCATATAATATTATTTAATGTAAATATGTGTAAGTGGTCCGAAAGGAAAGTGATCCGTAAAATTATTTGAAAAATCTGACGGAACGAATTTCAAAACATGCTTATGAAAACTGTGTGGGTTTTTATTAGTGTAGTAGTTGTAAAGTTGCATCATGAATGGTACCATCTTCTTGTAATTTGTGAAATGAACAGTTTCTTATTAGTTTTTTCTGCCTTACAACTCTTTTTTATCAGCCACTTGGCTAATTTTGGGCAACTTTATCTCCTTTATCTCACTCATCACTTTCTCTTTTGCTCGATTCTCTTTGCATATTTTAGATATATATAAATCTAGTCCCATTTTTATATACCTTAAATAAATAGTCTGTTTTACTCATTTTCATTCTATCTAGCATGCTCTTTTTCTATATTAATATATTGATAAAAAAAATATATGATTTTACAATATCTAACTTAAAATCTAATATAAAATTATTGATTAGTAAGACAATATTTAATTTGTTTGAACTATAAGGAGAACTAGTAAATATAGTAGGATTATTTATCTAATTAGGTTTGTTTTTTCTTTAAATAAATTCATGTTAAATTAAACCACATCCATATAAATTGAAGCAATAGAGTAACTAATTATGTATACATATAATTGACTAATTACAGTTATGTTTTTGGTTTGGAAAAAAAAAACAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAAGTAAGTCCATTGCTCAATTTTTAGTCAAAGTTACTATTTTTAATTTAGCTTTACACTACATGTTTAATTAACTTATATCATATGATCAATAGTAAGTTAAACTCTATTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGA</genome_strand>
        <mrna_strand>CATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAA.............................................................................................................................TTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212682" ref_strand="+" ref_description="SGN-E212682 [cLEC-73-E14]">
      <seq>catgatcatgaataacggatcactcctccaaaatatctctccagatatcgattcgttggaatcaggcgaagtcagtattttaattttaaatgataagaagaaaaattcagacaaatatttgagtcagcaattaactcaggagtcttgcgttttctcagctgtgaaaggagttgtggacagtgccattgataatgaaacgcgcatgggagcttctctcattcgtctacatttccatgactgctttgttgatggttgtgatggaggtattctgctagatgatattaatggaacattcaccggggaacaaaactcaccacccaacaacaactcagtcagaggctttgaagtgatagcacaagctaaacaaagtgttgtagattcatgccccaacatatctgtatcttgtgctgatattttagctattgctgctcgtgattcccttgctaaattaggaggacnaacttataccgttgcactagggagaagcgatgctacaacagccaactttagtggtgctataaatcaacttccagctccatccgacaacctaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="66776" stop="64502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66476" g_stop="66227" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66226" i_stop="65231" i_length="996">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65230" g_stop="65033" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="448" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65032" i_stop="64908" i_length="125">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64907" g_stop="64802" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="554" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E212682" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66476" e_stop="66227"/>
          <exon e_start="65230" e_stop="65033"/>
          <exon e_start="64907" e_stop="64802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGATGTAAATATTCTTTCGTCCTTTTTCTCCCGCTCAATATTTTATAATAATGTAATTTTAAGGTTGATATAATCGTATGAATAAGTATTTACTTATTTTTTATCATAAATTTTAAATTTTTTAATTTTAACTTTTAAAATCTCTTACAACTAAACGCTTAATATAAAAATAGAAAGATCGGATTTTTTATTTTATTTTTGAGGACATATTAAAAAAATAAAACAGTATGTTAGGTGTAGTATATAAATTGAATCCGAGTCCTCCTTTCTCTTATTAAAATTAAAAGTAAAAACCTGGCTCCATGGACCATGGTCATATAATATTATTTAATGTAAATATGTGTAAGTGGTCCGAAAGGAAAGTGATCCGTAAAATTATTTGAAAAATCTGACGGAACGAATTTCAAAACATGCTTATGAAAACTGTGTGGGTTTTTATTAGTGTAGTAGTTGTAAAGTTGCATCATGAATGGTACCATCTTCTTGTAATTTGTGAAATGAACAGTTTCTTATTAGTTTTTTCTGCCTTACAACTCTTTTTTATCAGCCACTTGGCTAATTTTGGGCAACTTTATCTCCTTTATCTCACTCATCACTTTCTCTTTTGCTCGATTCTCTTTGCATATTTTAGATATATATAAATCTAGTCCCATTTTTATATACCTTAAATAAATAGTCTGTTTTACTCATTTTCATTCTATCTAGCATGCTCTTTTTCTATATTAATATATTGATAAAAAAAATATATGATTTTACAATATCTAACTTAAAATCTAATATAAAATTATTGATTAGTAAGACAATATTTAATTTGTTTGAACTATAAGGAGAACTAGTAAATATAGTAGGATTATTTATCTAATTAGGTTTGTTTTTTCTTTAAATAAATTCATGTTAAATTAAACCACATCCATATAAATTGAAGCAATAGAGTAACTAATTATGTATACATATAATTGACTAATTACAGTTATGTTTTTGGTTTGGAAAAAAAAAACAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAAGTAAGTCCATTGCTCAATTTTTAGTCAAAGTTACTATTTTTAATTTAGCTTTACACTACATGTTTAATTAACTTATATCATATGATCAATAGTAAGTTAAACTCTATTTTATTGGTATTTGACAGTTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTG</genome_strand>
        <mrna_strand>CATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAA.............................................................................................................................TTAGGAGGACNAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374939" ref_strand="+" ref_description="SGN-E374939 [TUS-15-I1]">
      <seq>catgatcatgaataacggatcactcctccaaaatatctctccagatatcgattcgttggaatcaggcgaagtcagtattttaattttaaatgataagaagaaaaattcacacaaatatttgagtcagcaattaactcaggagtcttgcgttttctcagctgtgaaaggagttgtggacagtgccattgataatgaaacgcgcatgggagcttctctcattcgtctacatttccatgactgctttgttgatggttgtgatggaggtattctgctagatgatattaatggaacattcaccggggaacaaaactcaccacccaacaacaactcagtcagaggctttgaagtgatagcacaagctaaacaaagtgtagtagattcatgccccaacatatctgtatcttgtgctgatattttagctattgctgctcgtgattcccttgctacaattagggaggacaaacttataccgtagcactagggagaagcgatgctacaacagccaacttttagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="66776" stop="64542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66476" g_stop="66227" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66226" i_stop="65231" i_length="996">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65230" g_stop="65033" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="449" r_length="199" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65032" i_stop="64908" i_length="125">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64907" g_stop="64842" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="517" r_length="68" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E374939" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66476" e_stop="66227"/>
          <exon e_start="65230" e_stop="65033"/>
          <exon e_start="64907" e_stop="64842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGATGTAAATATTCTTTCGTCCTTTTTCTCCCGCTCAATATTTTATAATAATGTAATTTTAAGGTTGATATAATCGTATGAATAAGTATTTACTTATTTTTTATCATAAATTTTAAATTTTTTAATTTTAACTTTTAAAATCTCTTACAACTAAACGCTTAATATAAAAATAGAAAGATCGGATTTTTTATTTTATTTTTGAGGACATATTAAAAAAATAAAACAGTATGTTAGGTGTAGTATATAAATTGAATCCGAGTCCTCCTTTCTCTTATTAAAATTAAAAGTAAAAACCTGGCTCCATGGACCATGGTCATATAATATTATTTAATGTAAATATGTGTAAGTGGTCCGAAAGGAAAGTGATCCGTAAAATTATTTGAAAAATCTGACGGAACGAATTTCAAAACATGCTTATGAAAACTGTGTGGGTTTTTATTAGTGTAGTAGTTGTAAAGTTGCATCATGAATGGTACCATCTTCTTGTAATTTGTGAAATGAACAGTTTCTTATTAGTTTTTTCTGCCTTACAACTCTTTTTTATCAGCCACTTGGCTAATTTTGGGCAACTTTATCTCCTTTATCTCACTCATCACTTTCTCTTTTGCTCGATTCTCTTTGCATATTTTAGATATATATAAATCTAGTCCCATTTTTATATACCTTAAATAAATAGTCTGTTTTACTCATTTTCATTCTATCTAGCATGCTCTTTTTCTATATTAATATATTGATAAAAAAAATATATGATTTTACAATATCTAACTTAAAATCTAATATAAAATTATTGATTAGTAAGACAATATTTAATTTGTTTGAACTATAAGGAGAACTAGTAAATATAGTAGGATTATTTATCTAATTAGGTTTGTTTTTTCTTTAAATAAATTCATGTTAAATTAAACCACATCCATATAAATTGAAGCAATAGAGTAACTAATTATGTATACATATAATTGACTAATTACAGTTATGTTTTTGGTTTGGAAAAAAAAAACAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTA-AAGTAAGTCCATTGCTCAATTTTTAGTCAAAGTTACTATTTTTAATTTAGCTTTACACTACATGTTTAATTAACTTATATCATATGATCAATAGTAAGTTAAACTCTATTTTATTGGTATTTGACAGTTA-GGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAAC-TTTAGTGGT</genome_strand>
        <mrna_strand>CATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCACACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTAGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTACAA.............................................................................................................................TTAGGGAGGACAAACTTATACCGTAGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTTAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209226" ref_strand="+" ref_description="SGN-E209226 [cLEC-53-E3]">
      <seq>catgatcatgaataacggatcactcctccaaaatatctctccagatatcgattcgttggaatcaggcgaagtcagtattttaattttaaatgataagaagaaaaattcagacaaatatttgagtcagcaattaactcaggagtcttgcgttttctcagctgtgaaaggagttgtggacagtgccattgataatgaaacgcgcatgggagcttctctcattcgtctacatttccatgactgctttgttgatggttgtgatggaggtattctgctagatgatattaatggaacattcaccggggaacaaaactcaccacccaacaacaactcagtcagaggctttgaagtgatagcacaagctaaacaaagtgttgtagattcatgccccaacatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="66776" stop="64784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66476" g_stop="66227" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66226" i_stop="65231" i_length="996">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65230" g_stop="65084" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="397" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E209226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66476" e_stop="66227"/>
          <exon e_start="65230" e_stop="65084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGATGTAAATATTCTTTCGTCCTTTTTCTCCCGCTCAATATTTTATAATAATGTAATTTTAAGGTTGATATAATCGTATGAATAAGTATTTACTTATTTTTTATCATAAATTTTAAATTTTTTAATTTTAACTTTTAAAATCTCTTACAACTAAACGCTTAATATAAAAATAGAAAGATCGGATTTTTTATTTTATTTTTGAGGACATATTAAAAAAATAAAACAGTATGTTAGGTGTAGTATATAAATTGAATCCGAGTCCTCCTTTCTCTTATTAAAATTAAAAGTAAAAACCTGGCTCCATGGACCATGGTCATATAATATTATTTAATGTAAATATGTGTAAGTGGTCCGAAAGGAAAGTGATCCGTAAAATTATTTGAAAAATCTGACGGAACGAATTTCAAAACATGCTTATGAAAACTGTGTGGGTTTTTATTAGTGTAGTAGTTGTAAAGTTGCATCATGAATGGTACCATCTTCTTGTAATTTGTGAAATGAACAGTTTCTTATTAGTTTTTTCTGCCTTACAACTCTTTTTTATCAGCCACTTGGCTAATTTTGGGCAACTTTATCTCCTTTATCTCACTCATCACTTTCTCTTTTGCTCGATTCTCTTTGCATATTTTAGATATATATAAATCTAGTCCCATTTTTATATACCTTAAATAAATAGTCTGTTTTACTCATTTTCATTCTATCTAGCATGCTCTTTTTCTATATTAATATATTGATAAAAAAAATATATGATTTTACAATATCTAACTTAAAATCTAATATAAAATTATTGATTAGTAAGACAATATTTAATTTGTTTGAACTATAAGGAGAACTAGTAAATATAGTAGGATTATTTATCTAATTAGGTTTGTTTTTTCTTTAAATAAATTCATGTTAAATTAAACCACATCCATATAAATTGAAGCAATAGAGTAACTAATTATGTATACATATAATTGACTAATTACAGTTATGTTTTTGGTTTGGAAAAAAAAAACAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCT</genome_strand>
        <mrna_strand>CATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337089" ref_strand="+" ref_description="SGN-E337089 [cTOE-7-G4]">
      <seq>tttcttccaaatagacatttaataatttctttaagtgatgggttttcgtttgagccttttgagccttgcggtgagccttgtggcacttgcactcgcaggtgttgccatttatagaaatacttatgaggccatgatcatgaataacggatcactcctccaaaatatctctccagatatcgattcgttggaatcaggcgaagtcagtattttaattttaaatgataagaagaaaaattcagacaaatatttgagtcagcaattaactcaggagtcttgcgttttctcagctgtgaaaggagttgtggacagtgccattgataatgaaacgcgcatgggagcttctctcattcgtctacatttccatgactgctttgttgatggttgtgatggaggtattctgctagatgatattaatggaacattcaccggggaacaaaactcaccacccaacaacaactcagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="66905" stop="64846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66605" g_stop="66227" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66226" i_stop="65231" i_length="996">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65230" g_stop="65146" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="464" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E337089" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66605" e_stop="66227"/>
          <exon e_start="65230" e_stop="65146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCCAAATAGACATTTAATAATTTCTTTAAGTGATGGGTTTTCGTTTGAGCCTTTTGAGCCTTGCGGTGAGCCTTGTGGCACTTGCACTCGCAGGTGTTGCCATTTATAGAAATACTTATGAGGCCATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGATGTAAATATTCTTTCGTCCTTTTTCTCCCGCTCAATATTTTATAATAATGTAATTTTAAGGTTGATATAATCGTATGAATAAGTATTTACTTATTTTTTATCATAAATTTTAAATTTTTTAATTTTAACTTTTAAAATCTCTTACAACTAAACGCTTAATATAAAAATAGAAAGATCGGATTTTTTATTTTATTTTTGAGGACATATTAAAAAAATAAAACAGTATGTTAGGTGTAGTATATAAATTGAATCCGAGTCCTCCTTTCTCTTATTAAAATTAAAAGTAAAAACCTGGCTCCATGGACCATGGTCATATAATATTATTTAATGTAAATATGTGTAAGTGGTCCGAAAGGAAAGTGATCCGTAAAATTATTTGAAAAATCTGACGGAACGAATTTCAAAACATGCTTATGAAAACTGTGTGGGTTTTTATTAGTGTAGTAGTTGTAAAGTTGCATCATGAATGGTACCATCTTCTTGTAATTTGTGAAATGAACAGTTTCTTATTAGTTTTTTCTGCCTTACAACTCTTTTTTATCAGCCACTTGGCTAATTTTGGGCAACTTTATCTCCTTTATCTCACTCATCACTTTCTCTTTTGCTCGATTCTCTTTGCATATTTTAGATATATATAAATCTAGTCCCATTTTTATATACCTTAAATAAATAGTCTGTTTTACTCATTTTCATTCTATCTAGCATGCTCTTTTTCTATATTAATATATTGATAAAAAAAATATATGATTTTACAATATCTAACTTAAAATCTAATATAAAATTATTGATTAGTAAGACAATATTTAATTTGTTTGAACTATAAGGAGAACTAGTAAATATAGTAGGATTATTTATCTAATTAGGTTTGTTTTTTCTTTAAATAAATTCATGTTAAATTAAACCACATCCATATAAATTGAAGCAATAGAGTAACTAATTATGTATACATATAATTGACTAATTACAGTTATGTTTTTGGTTTGGAAAAAAAAAACAGGGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCA</genome_strand>
        <mrna_strand>TTTCTTCCAAATAGACATTTAATAATTTCTTTAAGTGATGGGTTTTCGTTTGAGCCTTTTGAGCCTTGCGGTGAGCCTTGTGGCACTTGCACTCGCAGGTGTTGCCATTTATAGAAATACTTATGAGGCCATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734409" ref_strand="+" ref_description="SGN-E734409 [LB12CD06]">
      <seq>aaaacatcgataatatccattttcgaaaattcatcgtgtacgttaattaatttttaaggcatggctacattgggacgtgacgttgtgtttgaggatttttttccatcaatggtggagaaactagggtcagaagggttcttgaaggagctaaagaacgggttccgggcattgatggataaggagagggaagtgatcacgtttgagagcttgaagaggaattcggcgttgttagggttagaaggaatgagtgatgatgaactaatgtgtatgttgagggaaggggatttgaatggagatgattgcttgaatgagaaagaattttgtgtgctaatggtaaggttgagccctgatttgatggaaaaatcgagaatgtggttcgctcagagcattgaaaatgatctgatgtaggctcgtattagcatgtgctttattaagggcattcattttgaagtaggattattaagctattctacctaggtctattaatttctatcatgttatttttcctcctatgtatgtgtcgtctagttttattattagtgaagttcattgttttatttgccattattaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="-" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="75916" stop="23773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75616" g_stop="75041" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75040" i_stop="74956" i_length="85">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74955" g_stop="74940" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="591" r_length="16" r_score="0.812"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="-" ref_id="SGN-E734409" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75616" e_stop="75041"/>
          <exon e_start="74955" e_stop="74940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATCGATAATATCCATTTTCGAAAATTCATCGTGTACGTTAATTAATTTTTAAGGCATGGCTACATTGGGACGTGACGTTGTGTTTGAGGATTTTTTTCCATCAATGATGGAGAAACTAGGGTCAGAAGGGTTCTTGAAGGAGCTAAAGAACGGGTTCCGGGCATTGATGGATAAGGAGAGGGAAGTGATCACGTTTGAGAGCTTGAAGAGGAATTCGGCGTTGTTAGGGTTAGAAGGAATGAGTGATGATGAACTAATGTGTATGTTGAGGGAAGGGGATTTGAATGGAGATGATTGCTTGAATGAGAAAGAATTTTGTGTGCTAATGGTAAGGTTGAGCCCTGATTTGATGGAAAAATCGAGAATGTGGTTCGCTCAGAGCATTGAAAATGATCTGATGTAGGCTCGTATTAGCATGTGCTTTATTGAGGGCATTCATTTTGAAGTAGGATTATTAAGCTATTCTAGCTAGGTCTATTAATTTCTATCTTGTTATTTTTTCCTCCTATGTATGTGTCGTCTAGTTTTATTATTAGTGAAGTTCATTGTTTTATTTGCCATTATTAATGTAGTTTTTTCGGAATTCAATGAAATTTTGGTTGTTAATCGTTACTCTATTCTTTCAAATTTTATCTCGTGATGTTTAGTTTAGTTTCCAAAATAAAAAAATAA</genome_strand>
        <mrna_strand>AAAACATCGATAATATCCATTTTCGAAAATTCATCGTGTACGTTAATTAATTTTTAAGGCATGGCTACATTGGGACGTGACGTTGTGTTTGAGGATTTTTTTCCATCAATGGTGGAGAAACTAGGGTCAGAAGGGTTCTTGAAGGAGCTAAAGAACGGGTTCCGGGCATTGATGGATAAGGAGAGGGAAGTGATCACGTTTGAGAGCTTGAAGAGGAATTCGGCGTTGTTAGGGTTAGAAGGAATGAGTGATGATGAACTAATGTGTATGTTGAGGGAAGGGGATTTGAATGGAGATGATTGCTTGAATGAGAAAGAATTTTGTGTGCTAATGGTAAGGTTGAGCCCTGATTTGATGGAAAAATCGAGAATGTGGTTCGCTCAGAGCATTGAAAATGATCTGATGTAGGCTCGTATTAGCATGTGCTTTATTAAGGGCATTCATTTTGAAGTAGGATTATTAAGCTATTCTACCTAGGTCTATTAATTTCTATCATGTTA-TTTTTCCTCCTATGTATGTGTCGTCTAGTTTTATTATTAGTGAAGTTCATTGTTTTATTTGCCATTATTAAAAAA.....................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542903" ref_strand="+" ref_description="SGN-E542903 [TUS-64-H3]">
      <seq>cttattgggagaagaaaacttgataagaaatgaagctgagcttaagctgtaagaatatacttctttgttgtgcttttcttgttctgtttttttcttataacaaatgcttcatcagactccattagtattaatgagtttctgcaagattcagaaactttagtctctaataacaaaacattcaaattggttttttttgtcctgagaattcggcgaatcgttatgttggtatcatgtttaatatgaaatcacaatctgttatatgggtagccaacagagaccagcctttacaagattctagtggaagagtaacaatatcagaagatggcaatcttgtaatcttgaatggacagggaaagagtgtatggtcatcaaatatttcacctgctgtgaggaattctacagcccagctcttggatactggaaacttagttttgaaggacaactcaagtgagagagttctatgggaaagttttagtgatctttcagattcctacttgcagaacatgaaacttggcactgataagagtactaacaccacaaatctgttgaaatcatggaggagtcctgtagantcatctngatgggagttctcagctggtattcagactgaaacaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="+" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="88895" stop="90112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89195" g_stop="89812" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="+" ref_id="SGN-E542903" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89195" e_stop="89812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTGGGAGAAGAAAACTTGATAAGAAATGAAGCTGAGCTTAAGCTGTAAGAATATACTTCTTTGTTGTGCTTTTCTTGTTCTG-TTTTTTCTTATAACAAATGCTTCATCAGACTCCATTAGTATTAATGAGTTTCTGCAAGATTCAGAAACTTTAGTCTCTAATAACAAAACATTCAAATTGGTTTTTTTTTGTCCTGAGAATTCGGCGAATCGTTATGTTGGTATCATGTTTAATATGAAATCACAATCTGTTATATGGGTAGCCAACAGAGACCAGCCTTTACAAGATTCTAGTGGAAGAGTAACAATATCAGAAGATGGCAATCTTGTAATCTTGAATGGACAGGGAAAGAGTGTATGGTCATCAAATATTTCACCTGCTGTGAGGAATTCTACAGCCCAGCTCTTGGATACTGGAAACTTAGTTTTGAAGGACAACTCAAGTGAGAGAGTTCTATGGGAAAGTTTTAGTGATCTTTCAGATTCCTACTTGCAGAACATGAAACTTGGCACTGATAAGAGTACTAACACCACAAATCTGTTGAAATCATGGAGAAGTCCTGTAGATCCATCT-GATGGGAGTTTCTCAGCTGGTATTCAGACTGAAACAATTC</genome_strand>
        <mrna_strand>CTTATTGGGAGAAGAAAACTTGATAAGAAATGAAGCTGAGCTTAAGCTGTAAGAATATACTTCTTTGTTGTGCTTTTCTTGTTCTGTTTTTTTCTTATAACAAATGCTTCATCAGACTCCATTAGTATTAATGAGTTTCTGCAAGATTCAGAAACTTTAGTCTCTAATAACAAAACATTCAAATTGG-TTTTTTTTGTCCTGAGAATTCGGCGAATCGTTATGTTGGTATCATGTTTAATATGAAATCACAATCTGTTATATGGGTAGCCAACAGAGACCAGCCTTTACAAGATTCTAGTGGAAGAGTAACAATATCAGAAGATGGCAATCTTGTAATCTTGAATGGACAGGGAAAGAGTGTATGGTCATCAAATATTTCACCTGCTGTGAGGAATTCTACAGCCCAGCTCTTGGATACTGGAAACTTAGTTTTGAAGGACAACTCAAGTGAGAGAGTTCTATGGGAAAGTTTTAGTGATCTTTCAGATTCCTACTTGCAGAACATGAAACTTGGCACTGATAAGAGTACTAACACCACAAATCTGTTGAAATCATGGAGGAGTCCTGTAGANTCATCTNGATGGGAG-TTCTCAGCTGGTATTCAGACTGAAACAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302873" ref_strand="+" ref_description="SGN-E302873 [cLEW-26-G23]">
      <seq>gctgagcttaagctgtaagaatatactgcgtggtggtgcttttcttgttctgtttttttctcataacaaatgcttcatcagactccattagtattaatgagtttctgcaagattcagaaactttagtctctaataacaaaacattcaaattggttttttttgtcctgagaattcggcgaatcgttatgttggtatcatgtttaatatgaaatcacaatctgttatatgggtagccaacagagaccagcctttacaagattctagtggaagagtaacaatatcagaagatggcaatcttgtaatcttgaatggacagggaaagagtgtatggtcatcaaatatttcacctgctgtgaggaattctacagcccagctcttggatactggaaacttagttttgaaggacaactcaagtgagagagttctatgggaaagttttagtgatctttcagattcctacttgcagaacatgaaacttggcactgataagagtactaacaccacaaatctgttgaaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="+" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="88929" stop="90050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89229" g_stop="89750" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="+" ref_id="SGN-E302873" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89229" e_stop="89750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAGCTTAAGCTGTAAGAATATACTTCTTTGTTGTGCTTTTCTTGTTCTGT-TTTTTCTTATAACAAATGCTTCATCAGACTCCATTAGTATTAATGAGTTTCTGCAAGATTCAGAAACTTTAGTCTCTAATAACAAAACATTCAAATTGGTTTTTTTTTGTCCTGAGAATTCGGCGAATCGTTATGTTGGTATCATGTTTAATATGAAATCACAATCTGTTATATGGGTAGCCAACAGAGACCAGCCTTTACAAGATTCTAGTGGAAGAGTAACAATATCAGAAGATGGCAATCTTGTAATCTTGAATGGACAGGGAAAGAGTGTATGGTCATCAAATATTTCACCTGCTGTGAGGAATTCTACAGCCCAGCTCTTGGATACTGGAAACTTAGTTTTGAAGGACAACTCAAGTGAGAGAGTTCTATGGGAAAGTTTTAGTGATCTTTCAGATTCCTACTTGCAGAACATGAAACTTGGCACTGATAAGAGTACTAACACCACAAATCTGTTGAAATCATG</genome_strand>
        <mrna_strand>GCTGAGCTTAAGCTGTAAGAATATACTGCGTGGTGGTGCTTTTCTTGTTCTGTTTTTTTCTCATAACAAATGCTTCATCAGACTCCATTAGTATTAATGAGTTTCTGCAAGATTCAGAAACTTTAGTCTCTAATAACAAAACATTCAAATTGG-TTTTTTTTGTCCTGAGAATTCGGCGAATCGTTATGTTGGTATCATGTTTAATATGAAATCACAATCTGTTATATGGGTAGCCAACAGAGACCAGCCTTTACAAGATTCTAGTGGAAGAGTAACAATATCAGAAGATGGCAATCTTGTAATCTTGAATGGACAGGGAAAGAGTGTATGGTCATCAAATATTTCACCTGCTGTGAGGAATTCTACAGCCCAGCTCTTGGATACTGGAAACTTAGTTTTGAAGGACAACTCAAGTGAGAGAGTTCTATGGGAAAGTTTTAGTGATCTTTCAGATTCCTACTTGCAGAACATGAAACTTGGCACTGATAAGAGTACTAACACCACAAATCTGTTGAAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210961" ref_strand="+" ref_description="SGN-E210961 [cLEC-69-L23]">
      <seq>tggtttatgaatacatgccaaaaagaagcttggatgcctatctctttggtgtacacattgaagaggaatacttccttgattggagcaaacgtgtgatcatcattgagggaatcggccgaggcctcctataccttcacagggattcaagactaaggattatccacagggatttaaaggcaagcaacattttgttggatgaatatctgaaccctaaaatttcagattttggtatggcaagaattattgcaggcaaccaagatcaagccaatacaattagggttgttggaacctatggttatatggcacctgaatatgcaatgacaggaagattctcagaaaaatcagatgtctacagctttggcgtattgttactggaaattattagcggaaggaggaacactagcttttaccaagaggatggtgcattaagccttctagcatgggcatggaagttgtggaatgaaaataagattgtcgaattggttgactccaagataattgaactacagctcaaaaaggagattcatagatgtgtacatgttggactattatgtgtacaagaatatgcagaagacaggccagatgtctccacagttttgtctatgctcacccgggaaattgatgatttaccaagtccctaacacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="+" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="85423" stop="92468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91255" g_stop="91302" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91303" i_stop="91407" i_length="105">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91408" g_stop="91651" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="292" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91652" i_stop="91736" i_length="85">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91737" g_stop="91887" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="443" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91888" i_stop="91962" i_length="75">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.786" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91963" g_stop="92168" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="648" r_length="205" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="+" ref_id="SGN-E210961" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91255" e_stop="91302"/>
          <exon e_start="91408" e_stop="91651"/>
          <exon e_start="91737" e_stop="91887"/>
          <exon e_start="91963" e_stop="92168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTATGAATACATGCCAAAAAGAAGCTTGGATGCCTATCTCTTTGGTTGGTTTCTTTTTCTTTTATTCCTTTTCTTTACATTCACTATTCAGTATGGTCTAACTAAAAAAGAAAAAAAATCGAACTGATACATTTTCAATGTACTTACAGGTGTACACATTGAAGAGGAATACTTCCTTGATTGGAGCAAACGTGTGATCATCATTGAGGGAATCGGCCGAGGCCTCCTATACCTTCACAGGGATTCAAGACTAAGGATTATCCACAGGGATTTAAAGGCAAGCAACATTTTGTTGGATGAATATCTGAACCCTAAAATTTCAGATTTTGGTATGGCAAGAATTATTGCAGGCAACCAAGATCAAGCCAATACAATTAGGGTTGTTGGAACCTAGTATGTTTGTGAATCTCATTCTCCATTTTATTCATGGTTAAAATGAAAAGAAAAAGTAATCGTTCAAATTTATAATGTGATGCAGTGGTTATATGGCACCTGAATATGCAATGACAGGAAGATTCTCAGAAAAATCAGATGTCTACAGCTTTGGCGTATTGTTACTGGAAATTATTAGCGGAAGGAGGAACACTAGCTTTTACCAAGAGGATGGTGCATTAAGCCTTCTAGCATGGGTAAGTTTTTATGAAAACTAAGCTCCACTTCATATGAAATGTCAACCTTTCATAGTCAATACTCTTGCTCTTCAGGCATGGAAGTTGTGGAATGAAAATAAGATTGTCGAATTGGTTGACTCCAAGATAATTGAACTACAGCTCAAAAAGGAGATTCATAGATGTGTACATGTTGGACTATTATGTGTACAAGAATATGCAGAAGACAGGCCAAATGTCTCCACAGTTTTGTCTATGCTCACCCGGGAAATTGATGATTTACCAAGTCCTAAACAACCTGC</genome_strand>
        <mrna_strand>TGGTTTATGAATACATGCCAAAAAGAAGCTTGGATGCCTATCTCTTTG.........................................................................................................GTGTACACATTGAAGAGGAATACTTCCTTGATTGGAGCAAACGTGTGATCATCATTGAGGGAATCGGCCGAGGCCTCCTATACCTTCACAGGGATTCAAGACTAAGGATTATCCACAGGGATTTAAAGGCAAGCAACATTTTGTTGGATGAATATCTGAACCCTAAAATTTCAGATTTTGGTATGGCAAGAATTATTGCAGGCAACCAAGATCAAGCCAATACAATTAGGGTTGTTGGAACCTA.....................................................................................TGGTTATATGGCACCTGAATATGCAATGACAGGAAGATTCTCAGAAAAATCAGATGTCTACAGCTTTGGCGTATTGTTACTGGAAATTATTAGCGGAAGGAGGAACACTAGCTTTTACCAAGAGGATGGTGCATTAAGCCTTCTAGCATGG...........................................................................GCATGGAAGTTGTGGAATGAAAATAAGATTGTCGAATTGGTTGACTCCAAGATAATTGAACTACAGCTCAAAAAGGAGATTCATAGATGTGTACATGTTGGACTATTATGTGTACAAGAATATGCAGAAGACAGGCCAGATGTCTCCACAGTTTTGTCTATGCTCACCCGGGAAATTGATGATTTACCAAGTCCCTAAC-ACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548790" ref_strand="+" ref_description="SGN-E548790 [TUS-64-H3](-)">
      <seq>agcggaaggaggaacactagcttttaccaagaggatggtgcattaagccttctagcatgggcatggaagttgtggaatgaaaataagattgtcgaattggttgactccaagataattgaactacagctcaaaaaggagattcatagatgtgtacatgttggactattatgtgtacaagaatatgcagaagacaggccaaatgtctccacagttttgtctatgctcacccgggaaattgatgatttaccaagtcctaaacaacctgcatttacaacaagaccgaccccttccaagaaaggctcctctagaattcaagtctccgtgaacgatgttagcattactattatggaagcacgatagagatcatataattttagtgtaggcatatatcttattcatttcctgtaattattcttgtatgtgattctacatttagaatccaagagaagtttaaaccgagctgagtcctttagcagcgagaatttcagtcaagagattaacaagttaaaaaaaaaaaaaaaaaaaagctcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0075O22-fAWjw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0075O22.2" temp_strand="+" temp_description="C02SLe0075O22.2  AC215458.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0075O22 sequenced_by:kribb upload_account_name:korea">
        <position start="91528" stop="92709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91828" g_stop="91887" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91888" i_stop="91962" i_length="75">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.786" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91963" g_stop="92405" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="503" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="527"/>
      <MATCH_line gen_id="C02SLe0075O22.2" gen_strand="+" ref_id="SGN-E548790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0075O22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91828" e_stop="91887"/>
          <exon e_start="91963" e_stop="92405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGAAGGAGGAACACTAGCTTTTACCAAGAGGATGGTGCATTAAGCCTTCTAGCATGGGTAAGTTTTTATGAAAACTAAGCTCCACTTCATATGAAATGTCAACCTTTCATAGTCAATACTCTTGCTCTTCAGGCATGGAAGTTGTGGAATGAAAATAAGATTGTCGAATTGGTTGACTCCAAGATAATTGAACTACAGCTCAAAAAGGAGATTCATAGATGTGTACATGTTGGACTATTATGTGTACAAGAATATGCAGAAGACAGGCCAAATGTCTCCACAGTTTTGTCTATGCTCACCCGGGAAATTGATGATTTACCAAGTCCTAAACAACCTGCATTTACAACAAGACCGACCCCTTCCAAGAAAGGCTCCTCTAGAATTCAAGTCTCCGTGAACGATGTTAGCATTACTATTATGGAAGCACGATAGAGATCATATAATTTTAGTGTAGGCATATATCTTATTCATTTCCTGTAATTATTCTTGTATGTGATTCTACATTTAGAATCCAAGAGAAGTTTAAACCGAGCTGAGTCCTTTAGCAGCGAGAATTTCAGTCAAGAGATTAACAA</genome_strand>
        <mrna_strand>AGCGGAAGGAGGAACACTAGCTTTTACCAAGAGGATGGTGCATTAAGCCTTCTAGCATGG...........................................................................GCATGGAAGTTGTGGAATGAAAATAAGATTGTCGAATTGGTTGACTCCAAGATAATTGAACTACAGCTCAAAAAGGAGATTCATAGATGTGTACATGTTGGACTATTATGTGTACAAGAATATGCAGAAGACAGGCCAAATGTCTCCACAGTTTTGTCTATGCTCACCCGGGAAATTGATGATTTACCAAGTCCTAAACAACCTGCATTTACAACAAGACCGACCCCTTCCAAGAAAGGCTCCTCTAGAATTCAAGTCTCCGTGAACGATGTTAGCATTACTATTATGGAAGCACGATAGAGATCATATAATTTTAGTGTAGGCATATATCTTATTCATTTCCTGTAATTATTCTTGTATGTGATTCTACATTTAGAATCCAAGAGAAGTTTAAACCGAGCTGAGTCCTTTAGCAGCGAGAATTTCAGTCAAGAGATTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>65</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3939" PGL_stop="3324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3939" e_stop="3800"/>
            <exon e_start="3692" e_stop="3324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="3939" e_stop="3800" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="3799" i_stop="3693" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3692" e_stop="3324" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3939" stop="3800"/>
              <exon start="3692" stop="3324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3814" stop="3800"/>
              <exon start="3692" stop="3324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3656" stop="3324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3647" stop="3324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCAAACACATTCAGTTAAGAAAGGTGCTGGACAAAACAGCGGTGCAACTAAAAATGGAAAAACAGAAAACCAAGTGGTGGCAACAAAAAAGAGGGAAAAGAAGAAACCCCTTCCTAGAGAGGAAATTGCAAAAGCTAG : GGAGGAGAAGAGGAAAGCACTTAGGGAAGCTACACGAAAAGCCACGATGAAGAACAAATGAGGTCTGGTGATAAGCCGAAGATATTTTACCAGAGGTGACATGAGCGAACATAAAACAAGAAACTCTGGTGATTTTGTGAAAGCTCACCTCGCGTATTATTAGCACCTGCCAGCTAGTTGTAATATTTTTGTTATTGGTTGATGACTTTGAGATGAAGAGAGCTGGAGGTCGTGTATGATTTTGCTTTAGAAAACAACTTAGGGTTCATGGTTTGCATGAATATGAATCCAAAAATTTTGTCCTATACTTTTAACCTACTTGGGAATGAGCAATGAAAATTATAAAGGGAAAAGGGTAGTTTGTATTCC</gDNA_template>
            <first_frame> V  Q  T  H  S  V  K  K  G  A  G  Q  N  S  G  A  T  K  N  G  K  T  E  N  Q  V  V  A  T  K  K  R  E  K  K  K  P  L  P  R  E  E  I  A  K  A  R :   E  E  K  R  K  A  L  R  E  A  T  R  K  A  T  M  K  N  K  *  G  L  V  I  S  R  R  Y  F  T  R  G  D  M  S  E  H  K  T  R  N  S  G  D  F  V  K  A  H  L  A  Y  Y  *  H  L  P  A  S  C  N  I  F  V  I  G  *  *  L  *  D  E  E  S  W  R  S  C  M  I  L  L  *  K  T  T  *  G  S  W  F  A  *  I  *  I  Q  K  F  C  P  I  L  L  T  Y  L  G  M  S  N  E  N  Y  K  G  K  R  V  V  C  I   </first_frame>
            <second_frame>  S  K  H  I  Q  L  R  K  V  L  D  K  T  A  V  Q  L  K  M  E  K  Q  K  T  K  W  W  Q  Q  K  R  G  K  R  R  N  P  F  L  E  R  K  L  Q  K  L   : G  R  R  R  G  K  H  L  G  K  L  H  E  K  P  R  *  R  T  N  E  V  W  *  *  A  E  D  I  L  P  E  V  T  *  A  N  I  K  Q  E  T  L  V  I  L  *  K  L  T  S  R  I  I  S  T  C  Q  L  V  V  I  F  L  L  L  V  D  D  F  E  M  K  R  A  G  G  R  V  *  F  C  F  R  K  Q  L  R  V  H  G  L  H  E  Y  E  S  K  N  F  V  L  Y  F  *  P  T  W  E  *  A  M  K  I  I  K  G  K  G  *  F  V  F  </second_frame>
            <third_frame>   P  N  T  F  S  *  E  R  C  W  T  K  Q  R  C  N  *  K  W  K  N  R  K  P  S  G  G  N  K  K  E  G  K  E  E  T  P  S  *  R  G  N  C  K  S  *  :  G  G  E  E  E  S  T  *  G  S  Y  T  K  S  H  D  E  E  Q  M  R  S  G  D  K  P  K  I  F  Y  Q  R  *  H  E  R  T  *  N  K  K  L  W  *  F  C  E  S  S  P  R  V  L  L  A  P  A  S  *  L  *  Y  F  C  Y  W  L  M  T  L  R  *  R  E  L  E  V  V  Y  D  F  A  L  E  N  N  L  G  F  M  V  C  M  N  M  N  P  K  I  L  S  Y  T  F  N  L  L  G  N  E  Q  *  K  L  *  R  E  K  G  S  L  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3939" stop="3800"/>
                    <exon start="3692" stop="3632"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQTHSVKKGAGQNSGATKNGKTENQVVATKKREKKKPLPREEIAKAREEKRKALREATRKATMKNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7779" PGL_stop="4018"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7779" e_stop="7703"/>
            <exon e_start="7573" e_stop="7502"/>
            <exon e_start="7410" e_stop="7337"/>
            <exon e_start="6889" e_stop="6837"/>
            <exon e_start="6290" e_stop="6181"/>
            <exon e_start="5915" e_stop="5847"/>
            <exon e_start="5773" e_stop="5699"/>
            <exon e_start="5184" e_stop="5092"/>
            <exon e_start="4999" e_stop="4920"/>
            <exon e_start="4844" e_stop="4745"/>
            <exon e_start="4140" e_stop="4018"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.998" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.986"/>
          <exon-intron don_prob="0.993" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.538" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.913"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.929" e_score="1.000"/>
          <exon-only e_score="0.878"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="7779" e_stop="7703" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7702" i_stop="7574" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7573" e_stop="7502" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="7501" i_stop="7411" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="7410" e_stop="7337" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="7336" i_stop="6890" i_length="447"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6889" e_stop="6837" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.986">
            <gDNA_intron_boundary i_start="6836" i_stop="6291" i_length="546"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6290" e_stop="6181" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.538" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6180" i_stop="5916" i_length="265"/>
          </intron>
          <exon e_serial="6" e_score="0.913">
            <gDNA_exon_boundary e_start="5915" e_stop="5847" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5846" i_stop="5774" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5773" e_stop="5699" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5698" i_stop="5185" i_length="514"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="5184" e_stop="5092" e_length="93"/>
          </exon>
          <intron i_serial="8" don_prob="0.960" acc_prob="0.996">
            <gDNA_intron_boundary i_start="5091" i_stop="5000" i_length="92"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4999" e_stop="4920" e_length="80"/>
          </exon>
          <intron i_serial="9" don_prob="0.981" acc_prob="0.912">
            <gDNA_intron_boundary i_start="4919" i_stop="4845" i_length="75"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="4844" e_stop="4745" e_length="100"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.929">
            <gDNA_intron_boundary i_start="4744" i_stop="4141" i_length="604"/>
          </intron>
          <exon e_serial="11" e_score="0.878">
            <gDNA_exon_boundary e_start="4140" e_stop="4018" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7779" stop="7703"/>
              <exon start="7573" stop="7502"/>
              <exon start="7410" stop="7337"/>
              <exon start="6889" stop="6837"/>
              <exon start="6290" stop="6190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6290" stop="6181"/>
              <exon start="5915" stop="5847"/>
              <exon start="5773" stop="5699"/>
              <exon start="5184" stop="5092"/>
              <exon start="4999" stop="4920"/>
              <exon start="4844" stop="4745"/>
              <exon start="4140" stop="4018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6290" stop="6181"/>
              <exon start="5915" stop="5847"/>
              <exon start="5773" stop="5699"/>
              <exon start="5184" stop="5092"/>
              <exon start="4999" stop="4920"/>
              <exon start="4844" stop="4745"/>
              <exon start="4140" stop="4058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6229" stop="6181"/>
              <exon start="5915" stop="5847"/>
              <exon start="5773" stop="5699"/>
              <exon start="5184" stop="5092"/>
              <exon start="4999" stop="4920"/>
              <exon start="4844" stop="4745"/>
              <exon start="4140" stop="4104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5883" stop="5847"/>
              <exon start="5773" stop="5699"/>
              <exon start="5184" stop="5092"/>
              <exon start="4999" stop="4920"/>
              <exon start="4844" stop="4754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACTCGCAGACGGGATTTAGCTGGCGTTCTTCTTAACAGAGGTGTCAATTTGGACCCATTAAGCAAATGGTCAAAG : GTTGGATTAGTTGTATATGATTCTCAAGTTCCAGTTGGTGCCACCCCTGAGTATATGGCTGGTCATTACATG : CTCCAAAGTGCAAGCTCTTTTCTGCCTGTAATGGCCCTTGCTCCTCAGGAGAATGAACGTGTCGTTGATATGGC : TGCTGCTCCTGGAGGCAAAACAACTTATGTTGCTGCACTGATGAAAAATAGTG : GTATTATTTATGCGAATGAGATGAAGGAGTCCAGACTTAAATCTCTCACTGCTAATTTACATCGCATGGGGGTAACAAACACCATTATCTGCAACTATGATGGAAGAGAG : TTGCCTAAAGTTTTGGGTCAGAGCACTGCTGATAGGATTTTGCTGGATGCTCCCTGCAGTGGCACTGGG : GTAATCTCCAAGGATGAGTCTGTTAAAACTTCCAAAACTGCACCAGATATACAAAATTGCTCACAACTGCAGAAG : GAACTAATACTTGCAGCAATTGACATGGTTGATGCCAACTCAAAAACAGGTGGATACATTGTGTATTCGACCTGCTCCATTATGGTTGAAGAG : AATGAAGCGGTTATAGATTATGCACTCAAGAAGAGAGATGTTAAGCTTGTTCCATGCGGACTTGATTTTGGGAGGCCTGG : ATTTATTCGCTTTAGGCAGCACCGTTTCCACACATCTTTGGACAAGACAAGGCGATTCTATCCTCATGTGCACAACATGGATGGATTTTTTGTAGCCAAG : TTGAAAAAGATGAGCAATTCCAAGTCTGCTGCAAACTCGTTGGCTCAGTCTGAAGAAGTACAAGGTGCTGAAAGCATTGAGAACAGTGAGCAGCAGGATTCTGAAGAGGATGATGACAAGAAT</gDNA_template>
            <first_frame> R  L  A  D  G  I  *  L  A  F  F  L  T  E  V  S  I  W  T  H  *  A  N  G  Q  R :   L  D  *  L  Y  M  I  L  K  F  Q  L  V  P  P  L  S  I  W  L  V  I  T  C :   S  K  V  Q  A  L  F  C  L  *  W  P  L  L  L  R  R  M  N  V  S  L  I  W   : L  L  L  L  E  A  K  Q  L  M  L  L  H  *  *  K  I  V  :  V  L  F  M  R  M  R  *  R  S  P  D  L  N  L  S  L  L  I  Y  I  A  W  G  *  Q  T  P  L  S  A  T  M  M  E  E  S :   C  L  K  F  W  V  R  A  L  L  I  G  F  C  W  M  L  P  A  V  A  L  G :   *  S  P  R  M  S  L  L  K  L  P  K  L  H  Q  I  Y  K  I  A  H  N  C  R  R :   N  *  Y  L  Q  Q  L  T  W  L  M  P  T  Q  K  Q  V  D  T  L  C  I  R  P  A  P  L  W  L  K  R :   M  K  R  L  *  I  M  H  S  R  R  E  M  L  S  L  F  H  A  D  L  I  L  G  G  L   : D  L  F  A  L  G  S  T  V  S  T  H  L  W  T  R  Q  G  D  S  I  L  M  C  T  T  W  M  D  F  L  *  P  S :   *  K  R  *  A  I  P  S  L  L  Q  T  R  W  L  S  L  K  K  Y  K  V  L  K  A  L  R  T  V  S  S  R  I  L  K  R  M  M  T  R   </first_frame>
            <second_frame>  D  S  Q  T  G  F  S  W  R  S  S  *  Q  R  C  Q  F  G  P  I  K  Q  M  V  K   : G  W  I  S  C  I  *  F  S  S  S  S  W  C  H  P  *  V  Y  G  W  S  L  H   : A  P  K  C  K  L  F  S  A  C  N  G  P  C  S  S  G  E  *  T  C  R  *  Y  G  :  C  C  S  W  R  Q  N  N  L  C  C  C  T  D  E  K  *  W :   Y  Y  L  C  E  *  D  E  G  V  Q  T  *  I  S  H  C  *  F  T  S  H  G  G  N  K  H  H  Y  L  Q  L  *  W  K  R   : V  A  *  S  F  G  S  E  H  C  *  *  D  F  A  G  C  S  L  Q  W  H  W   : G  N  L  Q  G  *  V  C  *  N  F  Q  N  C  T  R  Y  T  K  L  L  T  T  A  E   : G  T  N  T  C  S  N  *  H  G  *  C  Q  L  K  N  R  W  I  H  C  V  F  D  L  L  H  Y  G  *  R   : E  *  S  G  Y  R  L  C  T  Q  E  E  R  C  *  A  C  S  M  R  T  *  F  W  E  A  W  :  I  Y  S  L  *  A  A  P  F  P  H  I  F  G  Q  D  K  A  I  L  S  S  C  A  Q  H  G  W  I  F  C  S  Q   : V  E  K  D  E  Q  F  Q  V  C  C  K  L  V  G  S  V  *  R  S  T  R  C  *  K  H  *  E  Q  *  A  A  G  F  *  R  G  *  *  Q  E  </second_frame>
            <third_frame>   T  R  R  R  D  L  A  G  V  L  L  N  R  G  V  N  L  D  P  L  S  K  W  S  K  :  V  G  L  V  V  Y  D  S  Q  V  P  V  G  A  T  P  E  Y  M  A  G  H  Y  M  :  L  Q  S  A  S  S  F  L  P  V  M  A  L  A  P  Q  E  N  E  R  V  V  D  M  A :   A  A  P  G  G  K  T  T  Y  V  A  A  L  M  K  N  S   : G  I  I  Y  A  N  E  M  K  E  S  R  L  K  S  L  T  A  N  L  H  R  M  G  V  T  N  T  I  I  C  N  Y  D  G  R  E  :  L  P  K  V  L  G  Q  S  T  A  D  R  I  L  L  D  A  P  C  S  G  T  G  :  V  I  S  K  D  E  S  V  K  T  S  K  T  A  P  D  I  Q  N  C  S  Q  L  Q  K  :  E  L  I  L  A  A  I  D  M  V  D  A  N  S  K  T  G  G  Y  I  V  Y  S  T  C  S  I  M  V  E  E  :  N  E  A  V  I  D  Y  A  L  K  K  R  D  V  K  L  V  P  C  G  L  D  F  G  R  P  G :   F  I  R  F  R  Q  H  R  F  H  T  S  L  D  K  T  R  R  F  Y  P  H  V  H  N  M  D  G  F  F  V  A  K  :  L  K  K  M  S  N  S  K  S  A  A  N  S  L  A  Q  S  E  E  V  Q  G  A  E  S  I  E  N  S  E  Q  Q  D  S  E  E  D  D  D  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7777" stop="7703"/>
                    <exon start="7573" stop="7502"/>
                    <exon start="7410" stop="7337"/>
                    <exon start="6889" stop="6837"/>
                    <exon start="6290" stop="6181"/>
                    <exon start="5915" stop="5847"/>
                    <exon start="5773" stop="5699"/>
                    <exon start="5184" stop="5092"/>
                    <exon start="4999" stop="4920"/>
                    <exon start="4844" stop="4745"/>
                    <exon start="4140" stop="4018"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRRRDLAGVLLNRGVNLDPLSKWSKVGLVVYDSQVPVGATPEYMAGHYMLQSASSFLPVMALAPQENERVVDMAAAPGGKTTYVAALMKNSGIIYANEMKESRLKSLTANLHRMGVTNTIICNYDGRELPKVLGQSTADRILLDAPCSGTGVISKDESVKTSKTAPDIQNCSQLQKELILAAIDMVDANSKTGGYIVYSTCSIMVEENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFRQHRFHTSLDKTRRFYPHVHNMDGFFVAKLKKMSNSKSAANSLAQSEEVQGAESIENSEQQDSEEDDDKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17284" PGL_stop="16385"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17284" e_stop="16674"/>
            <exon e_start="16477" e_stop="16385"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17284" e_stop="16674" e_length="611"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16673" i_stop="16478" i_length="196"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16477" e_stop="16385" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17284" stop="16674"/>
              <exon start="16477" stop="16385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17282" stop="16705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17280" stop="16705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACATCATAATCTCCAAAGACCTAAAGATTTACCTAAATTTGAGATAGAAAAATTGTAAAAATCTTTTGTTCAGTGACTCTGTATGTGTGATAACAATTATTAACAATGAAGAAATGTGAGTTGTGCAGTTCCATAGCAAGAGTTTATTGTGAATCAGATCAAGCCAGTCTTTGTTGGGATTGTGATGCCAGAGTTCACACAGCCAATTTCCTTGTAGCTAAACATTCAAGGATTCTTCTCTGTAATTCTTGCCAATCACTTACCCCATGGACTGGCTCTGGCTCTAAGCTTGGTCCCACTGTTTCTGTTTGCCAGAAATGTTTTCACAGAAATAATAATGATGGCGCAGATCAACATCTTAATGATCATAATGATACGGAAGAAGAAGAAGATGATGATGATGATACGGAAGAAGACGAAGATGATGGAAGCAGTGATGGTGATAATCAAGTTGTTCCTTTATCTTCTTCAACTTCAGATCAACCTAATCCTCCCTCATTGACTTCAAGCTCTTCTAGTAGTGAAGATTCCACTAACAGATTTAACAGAAGAAGTATAATTGGATTTTCACCTAACAGAACAGAGGAAAATATCCAATCCCATTATTGT : GGCATTACAAGACCTAAAGAGAAGATAGAAAGGAGTTCATGGAGATGGAGATAATCGGGATATTTACAGCTCAAAAGCTAATTCTGTTATCTG</gDNA_template>
            <first_frame> T  H  H  N  L  Q  R  P  K  D  L  P  K  F  E  I  E  K  L  *  K  S  F  V  Q  *  L  C  M  C  D  N  N  Y  *  Q  *  R  N  V  S  C  A  V  P  *  Q  E  F  I  V  N  Q  I  K  P  V  F  V  G  I  V  M  P  E  F  T  Q  P  I  S  L  *  L  N  I  Q  G  F  F  S  V  I  L  A  N  H  L  P  H  G  L  A  L  A  L  S  L  V  P  L  F  L  F  A  R  N  V  F  T  E  I  I  M  M  A  Q  I  N  I  L  M  I  I  M  I  R  K  K  K  K  M  M  M  M  I  R  K  K  T  K  M  M  E  A  V  M  V  I  I  K  L  F  L  Y  L  L  Q  L  Q  I  N  L  I  L  P  H  *  L  Q  A  L  L  V  V  K  I  P  L  T  D  L  T  E  E  V  *  L  D  F  H  L  T  E  Q  R  K  I  S  N  P  I  I  V :   A  L  Q  D  L  K  R  R  *  K  G  V  H  G  D  G  D  N  R  D  I  Y  S  S  K  A  N  S  V  I   </first_frame>
            <second_frame>  H  I  I  I  S  K  D  L  K  I  Y  L  N  L  R  *  K  N  C  K  N  L  L  F  S  D  S  V  C  V  I  T  I  I  N  N  E  E  M  *  V  V  Q  F  H  S  K  S  L  L  *  I  R  S  S  Q  S  L  L  G  L  *  C  Q  S  S  H  S  Q  F  P  C  S  *  T  F  K  D  S  S  L  *  F  L  P  I  T  Y  P  M  D  W  L  W  L  *  A  W  S  H  C  F  C  L  P  E  M  F  S  Q  K  *  *  *  W  R  R  S  T  S  *  *  S  *  *  Y  G  R  R  R  R  *  *  *  *  Y  G  R  R  R  R  *  W  K  Q  *  W  *  *  S  S  C  S  F  I  F  F  N  F  R  S  T  *  S  S  L  I  D  F  K  L  F  *  *  *  R  F  H  *  Q  I  *  Q  K  K  Y  N  W  I  F  T  *  Q  N  R  G  K  Y  P  I  P  L  L   : W  H  Y  K  T  *  R  E  D  R  K  E  F  M  E  M  E  I  I  G  I  F  T  A  Q  K  L  I  L  L  S  </second_frame>
            <third_frame>   T  S  *  S  P  K  T  *  R  F  T  *  I  *  D  R  K  I  V  K  I  F  C  S  V  T  L  Y  V  *  *  Q  L  L  T  M  K  K  C  E  L  C  S  S  I  A  R  V  Y  C  E  S  D  Q  A  S  L  C  W  D  C  D  A  R  V  H  T  A  N  F  L  V  A  K  H  S  R  I  L  L  C  N  S  C  Q  S  L  T  P  W  T  G  S  G  S  K  L  G  P  T  V  S  V  C  Q  K  C  F  H  R  N  N  N  D  G  A  D  Q  H  L  N  D  H  N  D  T  E  E  E  E  D  D  D  D  D  T  E  E  D  E  D  D  G  S  S  D  G  D  N  Q  V  V  P  L  S  S  S  T  S  D  Q  P  N  P  P  S  L  T  S  S  S  S  S  S  E  D  S  T  N  R  F  N  R  R  S  I  I  G  F  S  P  N  R  T  E  E  N  I  Q  S  H  Y  C  :  G  I  T  R  P  K  E  K  I  E  R  S  S  W  R  W  R  *  S  G  Y  L  Q  L  K  S  *  F  C  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17189" stop="16674"/>
                    <exon start="16477" stop="16424"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLTMKKCELCSSIARVYCESDQASLCWDCDARVHTANFLVAKHSRILLCNSCQSLTPWTGSGSKLGPTVSVCQKCFHRNNNDGADQHLNDHNDTEEEEDDDDDTEEDEDDGSSDGDNQVVPLSSSTSDQPNPPSLTSSSSSSEDSTNRFNRRSIIGFSPNRTEENIQSHYCGITRPKEKIERSSWRWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23908" PGL_stop="22521"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23908" e_stop="22521"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="23908" e_stop="22521" e_length="1388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23908" stop="23159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23908" stop="23364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23865" stop="23309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23219" stop="22521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215113" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTCTATTCCTCAAAAGAAAAAGAAAAATTATGGGTAACCTTCAAATCCTCTCTCTTTTAATCTTTTCCTTCTTTTTGTCAAAATGTTACTCCAAACAAGAAGATTTTGTTCAGTGTCTTTCTAAATACTCTAAAACCAACGTTACACACAACATTTACACCCCAAAATCTCCAACCTATTCATCTATCTTAGAATATGCTCAAAAAAATCCTAGATGGATGAATTCTTCACATCCCATTTTCATTGTTTCCCCTACAAAAGAATCACAAATCAAGCCGGTTATTCGCTGTGCAAAAAAACTAGGGTTGCAAATGAAAATAAAAAGTGGTGGCCATGACTATGAAGGCATATCTTTTCGCTCTAAAACCCCTTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGAAGGAACAGTTTGGGTTCAAGCAGGGGCAACCCTCGGCCAGCTTTACTATGCAATTGCTAAAAAAAGTAATGTGCATGGTTTTGCTGGAGGTGTTTGTTTCAGTATTGGCACTGGAGGGATTATTAGTGGTGGAGGGTTAGGTACTTTGATGAGAAAATTCGGGCTTGCAGCTGATAATGTTGTAGATGCTCGCGTAATAGATGTAAATGGAAAAATTCTTAATAAGAACAAAATGAATGAAGATCTGTTTTGGGCAATAAGAGGAGGTGGAGGAGCAAGTTTTGGTGTTATTTTAGCATGGAAACTCAAACTTGTTCCTGTCCCGGAGAAAGTTACTGTTTTCAATGTTTACAAGAGGTTAGAGGGTAACCACAATCTCCTCACAAAATGGGAAAGCACCGCGCATCAATTACCTGATAAATTACTTATCAGAGTAATTATACAAAATGATGGAACAGAGAATGACAAGTACGTTGAAGTAATCTTTCAATCACTATACCTCGGACCTGTTGATGAGTTAATTCCATTGCTCAAAGAAAAATTCCCTGAATTTGATTTGGACAAAAAGGATTGCTTCCAAGAGCCTGTTGTGGATTGTAGTAACAGGCCTTGTATTAAGAAAGAATGTCGCGAATCTTCCTGGATTGGATCAGTCCTGTATTTCTATGGTAGGAGAACAAATGAATCACTTGAAGTTCTGCTAGAAAAGAGTATTCCAACACAGAAGAATTATTTCAAAGCCACATCTGATTTTGTGAAGACTCCAGTTCCGGAAAGTGGTTGGGAAATGGTTGAAAAAATGTTTTTGGAAGAAGAAAGACCTCAGATGATAATGGAGCCATTAGGTGGGATATTAGATGAAATATCAGAATCTGAAATTCCATTCCCTCATAGAAAGGGGAATTTGTATAATATTCAGTACTTGGTGAACTGGGGCGATAACAGCGAGAGTATATCAAGC</gDNA_template>
            <first_frame> N  F  Y  S  S  K  E  K  E  K  L  W  V  T  F  K  S  S  L  F  *  S  F  P  S  F  C  Q  N  V  T  P  N  K  K  I  L  F  S  V  F  L  N  T  L  K  P  T  L  H  T  T  F  T  P  Q  N  L  Q  P  I  H  L  S  *  N  M  L  K  K  I  L  D  G  *  I  L  H  I  P  F  S  L  F  P  L  Q  K  N  H  K  S  S  R  L  F  A  V  Q  K  N  *  G  C  K  *  K  *  K  V  V  A  M  T  M  K  A  Y  L  F  A  L  K  P  L  L  L  C  L  I  *  A  I  L  T  K  S  R  L  I  *  M  K  E  Q  F  G  F  K  Q  G  Q  P  S  A  S  F  T  M  Q  L  L  K  K  V  M  C  M  V  L  L  E  V  F  V  S  V  L  A  L  E  G  L  L  V  V  E  G  *  V  L  *  *  E  N  S  G  L  Q  L  I  M  L  *  M  L  A  *  *  M  *  M  E  K  F  L  I  R  T  K  *  M  K  I  C  F  G  Q  *  E  E  V  E  E  Q  V  L  V  L  F  *  H  G  N  S  N  L  F  L  S  R  R  K  L  L  F  S  M  F  T  R  G  *  R  V  T  T  I  S  S  Q  N  G  K  A  P  R  I  N  Y  L  I  N  Y  L  S  E  *  L  Y  K  M  M  E  Q  R  M  T  S  T  L  K  *  S  F  N  H  Y  T  S  D  L  L  M  S  *  F  H  C  S  K  K  N  S  L  N  L  I  W  T  K  R  I  A  S  K  S  L  L  W  I  V  V  T  G  L  V  L  R  K  N  V  A  N  L  P  G  L  D  Q  S  C  I  S  M  V  G  E  Q  M  N  H  L  K  F  C  *  K  R  V  F  Q  H  R  R  I  I  S  K  P  H  L  I  L  *  R  L  Q  F  R  K  V  V  G  K  W  L  K  K  C  F  W  K  K  K  D  L  R  *  *  W  S  H  *  V  G  Y  *  M  K  Y  Q  N  L  K  F  H  S  L  I  E  R  G  I  C  I  I  F  S  T  W  *  T  G  A  I  T  A  R  V  Y  Q   </first_frame>
            <second_frame>  I  S  I  P  Q  K  K  K  K  N  Y  G  *  P  S  N  P  L  S  F  N  L  F  L  L  F  V  K  M  L  L  Q  T  R  R  F  C  S  V  S  F  *  I  L  *  N  Q  R  Y  T  Q  H  L  H  P  K  I  S  N  L  F  I  Y  L  R  I  C  S  K  K  S  *  M  D  E  F  F  T  S  H  F  H  C  F  P  Y  K  R  I  T  N  Q  A  G  Y  S  L  C  K  K  T  R  V  A  N  E  N  K  K  W  W  P  *  L  *  R  H  I  F  S  L  *  N  P  F  C  Y  A  *  F  K  Q  S  *  Q  N  Q  D  *  F  K  *  R  N  S  L  G  S  S  R  G  N  P  R  P  A  L  L  C  N  C  *  K  K  *  C  A  W  F  C  W  R  C  L  F  Q  Y  W  H  W  R  D  Y  *  W  W  R  V  R  Y  F  D  E  K  I  R  A  C  S  *  *  C  C  R  C  S  R  N  R  C  K  W  K  N  S  *  *  E  Q  N  E  *  R  S  V  L  G  N  K  R  R  W  R  S  K  F  W  C  Y  F  S  M  E  T  Q  T  C  S  C  P  G  E  S  Y  C  F  Q  C  L  Q  E  V  R  G  *  P  Q  S  P  H  K  M  G  K  H  R  A  S  I  T  *  *  I  T  Y  Q  S  N  Y  T  K  *  W  N  R  E  *  Q  V  R  *  S  N  L  S  I  T  I  P  R  T  C  *  *  V  N  S  I  A  Q  R  K  I  P  *  I  *  F  G  Q  K  G  L  L  P  R  A  C  C  G  L  *  *  Q  A  L  Y  *  E  R  M  S  R  I  F  L  D  W  I  S  P  V  F  L  W  *  E  N  K  *  I  T  *  S  S  A  R  K  E  Y  S  N  T  E  E  L  F  Q  S  H  I  *  F  C  E  D  S  S  S  G  K  W  L  G  N  G  *  K  N  V  F  G  R  R  K  T  S  D  D  N  G  A  I  R  W  D  I  R  *  N  I  R  I  *  N  S  I  P  S  *  K  G  E  F  V  *  Y  S  V  L  G  E  L  G  R  *  Q  R  E  Y  I  K  </second_frame>
            <third_frame>   F  L  F  L  K  R  K  R  K  I  M  G  N  L  Q  I  L  S  L  L  I  F  S  F  F  L  S  K  C  Y  S  K  Q  E  D  F  V  Q  C  L  S  K  Y  S  K  T  N  V  T  H  N  I  Y  T  P  K  S  P  T  Y  S  S  I  L  E  Y  A  Q  K  N  P  R  W  M  N  S  S  H  P  I  F  I  V  S  P  T  K  E  S  Q  I  K  P  V  I  R  C  A  K  K  L  G  L  Q  M  K  I  K  S  G  G  H  D  Y  E  G  I  S  F  R  S  K  T  P  F  V  M  L  D  L  S  N  L  N  K  I  K  I  D  L  N  E  G  T  V  W  V  Q  A  G  A  T  L  G  Q  L  Y  Y  A  I  A  K  K  S  N  V  H  G  F  A  G  G  V  C  F  S  I  G  T  G  G  I  I  S  G  G  G  L  G  T  L  M  R  K  F  G  L  A  A  D  N  V  V  D  A  R  V  I  D  V  N  G  K  I  L  N  K  N  K  M  N  E  D  L  F  W  A  I  R  G  G  G  G  A  S  F  G  V  I  L  A  W  K  L  K  L  V  P  V  P  E  K  V  T  V  F  N  V  Y  K  R  L  E  G  N  H  N  L  L  T  K  W  E  S  T  A  H  Q  L  P  D  K  L  L  I  R  V  I  I  Q  N  D  G  T  E  N  D  K  Y  V  E  V  I  F  Q  S  L  Y  L  G  P  V  D  E  L  I  P  L  L  K  E  K  F  P  E  F  D  L  D  K  K  D  C  F  Q  E  P  V  V  D  C  S  N  R  P  C  I  K  K  E  C  R  E  S  S  W  I  G  S  V  L  Y  F  Y  G  R  R  T  N  E  S  L  E  V  L  L  E  K  S  I  P  T  Q  K  N  Y  F  K  A  T  S  D  F  V  K  T  P  V  P  E  S  G  W  E  M  V  E  K  M  F  L  E  E  E  R  P  Q  M  I  M  E  P  L  G  G  I  L  D  E  I  S  E  S  E  I  P  F  P  H  R  K  G  N  L  Y  N  I  Q  Y  L  V  N  W  G  D  N  S  E  S  I  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23906" stop="22521"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1386</number_coding_nucleotides>
                  <number_encoded_amino_acids>462</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLFLKRKRKIMGNLQILSLLIFSFFLSKCYSKQEDFVQCLSKYSKTNVTHNIYTPKSPTYSSILEYAQKNPRWMNSSHPIFIVSPTKESQIKPVIRCAKKLGLQMKIKSGGHDYEGISFRSKTPFVMLDLSNLNKIKIDLNEGTVWVQAGATLGQLYYAIAKKSNVHGFAGGVCFSIGTGGIISGGGLGTLMRKFGLAADNVVDARVIDVNGKILNKNKMNEDLFWAIRGGGGASFGVILAWKLKLVPVPEKVTVFNVYKRLEGNHNLLTKWESTAHQLPDKLLIRVIIQNDGTENDKYVEVIFQSLYLGPVDELIPLLKEKFPEFDLDKKDCFQEPVVDCSNRPCIKKECRESSWIGSVLYFYGRRTNESLEVLLEKSIPTQKNYFKATSDFVKTPVPESGWEMVEKMFLEEERPQMIMEPLGGILDEISESEIPFPHRKGNLYNIQYLVNWGDNSESISS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="32509" PGL_stop="33250"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32509" e_stop="33250"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="32509" e_stop="33250" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32509" stop="33250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32509" stop="32879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAACAACACTACACAAAACATTTACACCCCAAATTCTCCAACTTATTCATCTATCCTGGAATATGCCCAAAAAAAACCAAGATGGTTGAATTCTTCACATCCCAATTTCATTGCTTCCCCTAAAGAAGAATCAGAAATCAGGCCTATCATTCTTTGTAGTAAAAAAGTAGGCCTACAAATCAAGATCAAAAGCGGTGGTCACGACTATGAAGGCATATCTTATCGCTCTAAATCCCGGTTTGTTATGCTTGATTTAAGCAATCTTAACAAAATCAAGATTGATTTAAATGATGAAACAGTTTGGGTTCAAACAGGGGCGACCCTTGGCCAACTTTACTATGCAATTGCCAAGAAAAGTAAAGTTCATGCATTTCCAAGTGGTGTCTGTTTCAGTATTGGCACTGGTGGAATCATCAGTGGTGGTGGGATTGGCGCATTGATGAGGAAATTCGGCCTGTCAGCTGATAACGTTGTAGATGCACGTGTGATGGATGTGAATGGAAAAATTCTTGACAGGAAGATGAATGAAGATTTGTTTTGGGCGATAAGAGGAGGCGGAGGAGCAAGTTTCGGTGTTATTCTAGCATGGAAACTAAAATTGGTTCGTATTCCAGTGAAGCTTACTGTTTTCACGATTCGTAGGAAGTTAGAGGGTAACCTAAATCTCCTCCAAAAATGGGAAAACATAGCACATCAACTCCCTGAAGATTTGTTAATCAGAGTTATTATTCAAAATGCT</gDNA_template>
            <first_frame> Q  K  Q  H  Y  T  K  H  L  H  P  K  F  S  N  L  F  I  Y  P  G  I  C  P  K  K  T  K  M  V  E  F  F  T  S  Q  F  H  C  F  P  *  R  R  I  R  N  Q  A  Y  H  S  L  *  *  K  S  R  P  T  N  Q  D  Q  K  R  W  S  R  L  *  R  H  I  L  S  L  *  I  P  V  C  Y  A  *  F  K  Q  S  *  Q  N  Q  D  *  F  K  *  *  N  S  L  G  S  N  R  G  D  P  W  P  T  L  L  C  N  C  Q  E  K  *  S  S  C  I  S  K  W  C  L  F  Q  Y  W  H  W  W  N  H  Q  W  W  W  D  W  R  I  D  E  E  I  R  P  V  S  *  *  R  C  R  C  T  C  D  G  C  E  W  K  N  S  *  Q  E  D  E  *  R  F  V  L  G  D  K  R  R  R  R  S  K  F  R  C  Y  S  S  M  E  T  K  I  G  S  Y  S  S  E  A  Y  C  F  H  D  S  *  E  V  R  G  *  P  K  S  P  P  K  M  G  K  H  S  T  S  T  P  *  R  F  V  N  Q  S  Y  Y  S  K  C  </first_frame>
            <second_frame>  K  N  N  T  T  Q  N  I  Y  T  P  N  S  P  T  Y  S  S  I  L  E  Y  A  Q  K  K  P  R  W  L  N  S  S  H  P  N  F  I  A  S  P  K  E  E  S  E  I  R  P  I  I  L  C  S  K  K  V  G  L  Q  I  K  I  K  S  G  G  H  D  Y  E  G  I  S  Y  R  S  K  S  R  F  V  M  L  D  L  S  N  L  N  K  I  K  I  D  L  N  D  E  T  V  W  V  Q  T  G  A  T  L  G  Q  L  Y  Y  A  I  A  K  K  S  K  V  H  A  F  P  S  G  V  C  F  S  I  G  T  G  G  I  I  S  G  G  G  I  G  A  L  M  R  K  F  G  L  S  A  D  N  V  V  D  A  R  V  M  D  V  N  G  K  I  L  D  R  K  M  N  E  D  L  F  W  A  I  R  G  G  G  G  A  S  F  G  V  I  L  A  W  K  L  K  L  V  R  I  P  V  K  L  T  V  F  T  I  R  R  K  L  E  G  N  L  N  L  L  Q  K  W  E  N  I  A  H  Q  L  P  E  D  L  L  I  R  V  I  I  Q  N  A </second_frame>
            <third_frame>   K  T  T  L  H  K  T  F  T  P  Q  I  L  Q  L  I  H  L  S  W  N  M  P  K  K  N  Q  D  G  *  I  L  H  I  P  I  S  L  L  P  L  K  K  N  Q  K  S  G  L  S  F  F  V  V  K  K  *  A  Y  K  S  R  S  K  A  V  V  T  T  M  K  A  Y  L  I  A  L  N  P  G  L  L  C  L  I  *  A  I  L  T  K  S  R  L  I  *  M  M  K  Q  F  G  F  K  Q  G  R  P  L  A  N  F  T  M  Q  L  P  R  K  V  K  F  M  H  F  Q  V  V  S  V  S  V  L  A  L  V  E  S  S  V  V  V  G  L  A  H  *  *  G  N  S  A  C  Q  L  I  T  L  *  M  H  V  *  W  M  *  M  E  K  F  L  T  G  R  *  M  K  I  C  F  G  R  *  E  E  A  E  E  Q  V  S  V  L  F  *  H  G  N  *  N  W  F  V  F  Q  *  S  L  L  F  S  R  F  V  G  S  *  R  V  T  *  I  S  S  K  N  G  K  T  *  H  I  N  S  L  K  I  C  *  S  E  L  L  F  K  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32510" stop="33250"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNNTTQNIYTPNSPTYSSILEYAQKKPRWLNSSHPNFIASPKEESEIRPIILCSKKVGLQIKIKSGGHDYEGISYRSKSRFVMLDLSNLNKIKIDLNDETVWVQTGATLGQLYYAIAKKSKVHAFPSGVCFSIGTGGIISGGGIGALMRKFGLSADNVVDARVMDVNGKILDRKMNEDLFWAIRGGGGASFGVILAWKLKLVRIPVKLTVFTIRRKLEGNLNLLQKWENIAHQLPEDLLIRVIIQNA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="33361" PGL_stop="34111"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33361" e_stop="34111"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="33361" e_stop="34111" e_length="751"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33361" stop="34111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCAATTTGGAGCGAAAAGATTGCTTTCAAAAGACTACTAGTACTGGTGCGGAGAAAGAATGCCATGAAGTTTCCTGGATTCAGTCAATCTTATATTTCTATTTCAGAAAACTAACTGATGCCCCTGAAACATTGCTAGAAAAGAGTATTCCAACAAAGAAAAGTTACGACAAAGGGACGTCTGATTTTGTGAAGACTCCAGTTCCAGAAAGTGGTTGGGAAATGATAGAAAGACTGTTCTTGGAAGAAGAAAGTCCCCAGATGATCTTTGAGCCAATGGGTGCGAAATTTGATGAAATATCAGAATCCGAAATTCCATTCCCTCATAGAAAAGGGAATTTGTACAATATTCAGTACTTGAACTACTGGAGCGATAACAGTGAGACTATATCAAGCCAGAAGATAGGATGGATGAGGAAACTTTACCAGGAAATGGAGCCATATGTTTCAAATTCTCCAAGAACTGCTTATCTGAACTACAGGGACCTTGATTTTGGGACAAATTCAGAGGACTACAGCTATTCCAAGGCCAAAATATGGGGTCAAAAGTATTATAGTGGCAACTTTGAGAGATTGGCTCAAGTTAAGAGTAAGGTGGATCCCAACAATTTCTTCAGAAATGAACAAAGTATTCCACCTTATTCTACAAATTGAAGAGTCATTTTACTCACATGTCTCATATTATTAGACAGGCCAGTTAGTGCTTGTCACACATTGTAATATGATATTACAAAGAAGTTTCAGTTTTAA</gDNA_template>
            <first_frame> V  Q  F  G  A  K  R  L  L  S  K  D  Y  *  Y  W  C  G  E  R  M  P  *  S  F  L  D  S  V  N  L  I  F  L  F  Q  K  T  N  *  C  P  *  N  I  A  R  K  E  Y  S  N  K  E  K  L  R  Q  R  D  V  *  F  C  E  D  S  S  S  R  K  W  L  G  N  D  R  K  T  V  L  G  R  R  K  S  P  D  D  L  *  A  N  G  C  E  I  *  *  N  I  R  I  R  N  S  I  P  S  *  K  R  E  F  V  Q  Y  S  V  L  E  L  L  E  R  *  Q  *  D  Y  I  K  P  E  D  R  M  D  E  E  T  L  P  G  N  G  A  I  C  F  K  F  S  K  N  C  L  S  E  L  Q  G  P  *  F  W  D  K  F  R  G  L  Q  L  F  Q  G  Q  N  M  G  S  K  V  L  *  W  Q  L  *  E  I  G  S  S  *  E  *  G  G  S  Q  Q  F  L  Q  K  *  T  K  Y  S  T  L  F  Y  K  L  K  S  H  F  T  H  M  S  H  I  I  R  Q  A  S  *  C  L  S  H  I  V  I  *  Y  Y  K  E  V  S  V  L  </first_frame>
            <second_frame>  F  N  L  E  R  K  D  C  F  Q  K  T  T  S  T  G  A  E  K  E  C  H  E  V  S  W  I  Q  S  I  L  Y  F  Y  F  R  K  L  T  D  A  P  E  T  L  L  E  K  S  I  P  T  K  K  S  Y  D  K  G  T  S  D  F  V  K  T  P  V  P  E  S  G  W  E  M  I  E  R  L  F  L  E  E  E  S  P  Q  M  I  F  E  P  M  G  A  K  F  D  E  I  S  E  S  E  I  P  F  P  H  R  K  G  N  L  Y  N  I  Q  Y  L  N  Y  W  S  D  N  S  E  T  I  S  S  Q  K  I  G  W  M  R  K  L  Y  Q  E  M  E  P  Y  V  S  N  S  P  R  T  A  Y  L  N  Y  R  D  L  D  F  G  T  N  S  E  D  Y  S  Y  S  K  A  K  I  W  G  Q  K  Y  Y  S  G  N  F  E  R  L  A  Q  V  K  S  K  V  D  P  N  N  F  F  R  N  E  Q  S  I  P  P  Y  S  T  N  *  R  V  I  L  L  T  C  L  I  L  L  D  R  P  V  S  A  C  H  T  L  *  Y  D  I  T  K  K  F  Q  F  * </second_frame>
            <third_frame>   S  I  W  S  E  K  I  A  F  K  R  L  L  V  L  V  R  R  K  N  A  M  K  F  P  G  F  S  Q  S  Y  I  S  I  S  E  N  *  L  M  P  L  K  H  C  *  K  R  V  F  Q  Q  R  K  V  T  T  K  G  R  L  I  L  *  R  L  Q  F  Q  K  V  V  G  K  *  *  K  D  C  S  W  K  K  K  V  P  R  *  S  L  S  Q  W  V  R  N  L  M  K  Y  Q  N  P  K  F  H  S  L  I  E  K  G  I  C  T  I  F  S  T  *  T  T  G  A  I  T  V  R  L  Y  Q  A  R  R  *  D  G  *  G  N  F  T  R  K  W  S  H  M  F  Q  I  L  Q  E  L  L  I  *  T  T  G  T  L  I  L  G  Q  I  Q  R  T  T  A  I  P  R  P  K  Y  G  V  K  S  I  I  V  A  T  L  R  D  W  L  K  L  R  V  R  W  I  P  T  I  S  S  E  M  N  K  V  F  H  L  I  L  Q  I  E  E  S  F  Y  S  H  V  S  Y  Y  *  T  G  Q  L  V  L  V  T  H  C  N  M  I  L  Q  R  S  F  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33362" stop="34015"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNLERKDCFQKTTSTGAEKECHEVSWIQSILYFYFRKLTDAPETLLEKSIPTKKSYDKGTSDFVKTPVPESGWEMIERLFLEEESPQMIFEPMGAKFDEISESEIPFPHRKGNLYNIQYLNYWSDNSETISSQKIGWMRKLYQEMEPYVSNSPRTAYLNYRDLDFGTNSEDYSYSKAKIWGQKYYSGNFERLAQVKSKVDPNNFFRNEQSIPPYSTN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44154" PGL_stop="41874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44154" e_stop="43650"/>
            <exon e_start="43026" e_stop="41874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44154" e_stop="43650" e_length="505"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.989">
            <gDNA_intron_boundary i_start="43649" i_stop="43027" i_length="623"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="43026" e_stop="41874" e_length="1153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44154" stop="43650"/>
              <exon start="43026" stop="42678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42956" stop="42195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42461" stop="41874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42461" stop="41874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733518" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGATTCAAAAGTCTCTCCAGTATTCTTTCCCTCAACAAAAAGCAAAAAATATATCTTAGAAATATTAATAGATGGGTGCCAAAAAGGACTTCAATGTGAAGTTGATAAAAACAGAGGTGGTAGCAGCAATGTTGCCAATGCAAGAGCATTGGCTATCACAGTCCAATCTTGATTTGCTTTTACCTCCAGTGGATGTTGGAGTATTCTTATGTTATCAAAATCCCATTATTTCTGGAATATTGTCAAAAAATTGGTCATTTGATTCCATGGTCAATGTTCTTAAGGTGTCTTTGGGTGAGACTTTGGTTTCATACTATGCATTTGCTGGAGAGTTAATTCAAAACCTTGCTGGAGAGCCCGAAATTCTGTGTAACAATGCTGGAGTGGATTTCATAGAATCTTGGGCTGATGTAGAGCTTAAAGAGATCAACTTTCATAATCCGGATGAAAGCATAGAAGGCAAGCTTGTACCAAAGAAGAAGCATGGTGTACTAGCTGTTCAG : GTTACAGAACTAAAATGTGGAGGAGTAGTGGTGGGTTGTACATTTGATCATAGAGTTGCTGATGCTTACTCTTTCAACATGTTTCTTGTATCATGGGCTGAGTTAGCTCAGTCCAAACCACTCTCTCAGCTACCATCTTTCAGACGATCTTTTCTTACTCCGCGGTGTCCCTCTTTCTATGATCCTATAATTGATACCATGTACTTACCTATCTCAGCCCTGAAACAGGAAACCGCAAATATTGATCATGATGCTGATGAAATTATAAGTAGAATTTACTATGTTAAGGCCGAAGAAATCAGGCGCCTCCAATCACTAGCCAATTGTAACAACACAACGTTTACTAAACTTGAAGCATTCAGCGCTTTCCTATGGAAAACGATAGCCAGTGATACTAATAACAAGTTCAGGCTTGGAATTGTGGTTAATGGAAGAAGTAGATTAAGCAACGGAGATGAAGAACAAGCCAAGATACTAGAAGGGTATTTTGGGAATGTTCTTTCCATCCCATTTGGGGAAAAAAAAGTTGAGGAACTAAAAGAGAAATCATTGAGTTGGGTTGCAAGTGCAGTGCATGAGTTTCTTGAACATGTTGTGACAAGAGAACATTTTCTTGGGTTAATAAATTGGGTTGAGAATCATCGTCCGGAGCCAGCTCTAGCAAGAATTTATGCCACGAATGAAGATACACCTGCGCTGGTGGTGTCATCGGGGCAACAATTTCCGGTGAGGAAGATTGAGTTTGGATGGGGAGAGGCGGTGTTTGGTTCGTACCATTTTCCATGGGAAGGGAAATCAGGATATGTGATGCCAATGCCAAGTCCAAAAGGAAATGGAGATTGGATTGTTTACATGCATATGTTGAAGGGACAAATTGATTTGATTGAGGCTATTGCGTCAAATGTGTTCAAGCCCCTCACTGCAGATTATCTCAGTTTAAAGTAATCAATCAATGTTTGTGTATACATATGTACTCGGAGATCAGAAGGGGAGCTTTGGAGCAATGAAAACGTTGTTTGTTTCCGTTTGACTCATAGGTTGTGGGTTCAAGTATAGAAACAAATTACAATACTTGTGTTTATACAACACGACCTACTAACATAGGATGTTTTCTGCATAAAAACTACTTTAATATATATACTAAGCTTGTTTG</gDNA_template>
            <first_frame> K  D  S  K  V  S  P  V  F  F  P  S  T  K  S  K  K  Y  I  L  E  I  L  I  D  G  C  Q  K  G  L  Q  C  E  V  D  K  N  R  G  G  S  S  N  V  A  N  A  R  A  L  A  I  T  V  Q  S  *  F  A  F  T  S  S  G  C  W  S  I  L  M  L  S  K  S  H  Y  F  W  N  I  V  K  K  L  V  I  *  F  H  G  Q  C  S  *  G  V  F  G  *  D  F  G  F  I  L  C  I  C  W  R  V  N  S  K  P  C  W  R  A  R  N  S  V  *  Q  C  W  S  G  F  H  R  I  L  G  *  C  R  A  *  R  D  Q  L  S  *  S  G  *  K  H  R  R  Q  A  C  T  K  E  E  A  W  C  T  S  C  S   : G  Y  R  T  K  M  W  R  S  S  G  G  L  Y  I  *  S  *  S  C  *  C  L  L  F  Q  H  V  S  C  I  M  G  *  V  S  S  V  Q  T  T  L  S  A  T  I  F  Q  T  I  F  S  Y  S  A  V  S  L  F  L  *  S  Y  N  *  Y  H  V  L  T  Y  L  S  P  E  T  G  N  R  K  Y  *  S  *  C  *  *  N  Y  K  *  N  L  L  C  *  G  R  R  N  Q  A  P  P  I  T  S  Q  L  *  Q  H  N  V  Y  *  T  *  S  I  Q  R  F  P  M  E  N  D  S  Q  *  Y  *  *  Q  V  Q  A  W  N  C  G  *  W  K  K  *  I  K  Q  R  R  *  R  T  S  Q  D  T  R  R  V  F  W  E  C  S  F  H  P  I  W  G  K  K  S  *  G  T  K  R  E  I  I  E  L  G  C  K  C  S  A  *  V  S  *  T  C  C  D  K  R  T  F  S  W  V  N  K  L  G  *  E  S  S  S  G  A  S  S  S  K  N  L  C  H  E  *  R  Y  T  C  A  G  G  V  I  G  A  T  I  S  G  E  E  D  *  V  W  M  G  R  G  G  V  W  F  V  P  F  S  M  G  R  E  I  R  I  C  D  A  N  A  K  S  K  R  K  W  R  L  D  C  L  H  A  Y  V  E  G  T  N  *  F  D  *  G  Y  C  V  K  C  V  Q  A  P  H  C  R  L  S  Q  F  K  V  I  N  Q  C  L  C  I  H  M  Y  S  E  I  R  R  G  A  L  E  Q  *  K  R  C  L  F  P  F  D  S  *  V  V  G  S  S  I  E  T  N  Y  N  T  C  V  Y  T  T  R  P  T  N  I  G  C  F  L  H  K  N  Y  F  N  I  Y  T  K  L  V   </first_frame>
            <second_frame>  K  I  Q  K  S  L  Q  Y  S  F  P  Q  Q  K  A  K  N  I  S  *  K  Y  *  *  M  G  A  K  K  D  F  N  V  K  L  I  K  T  E  V  V  A  A  M  L  P  M  Q  E  H  W  L  S  Q  S  N  L  D  L  L  L  P  P  V  D  V  G  V  F  L  C  Y  Q  N  P  I  I  S  G  I  L  S  K  N  W  S  F  D  S  M  V  N  V  L  K  V  S  L  G  E  T  L  V  S  Y  Y  A  F  A  G  E  L  I  Q  N  L  A  G  E  P  E  I  L  C  N  N  A  G  V  D  F  I  E  S  W  A  D  V  E  L  K  E  I  N  F  H  N  P  D  E  S  I  E  G  K  L  V  P  K  K  K  H  G  V  L  A  V  Q  :  V  T  E  L  K  C  G  G  V  V  V  G  C  T  F  D  H  R  V  A  D  A  Y  S  F  N  M  F  L  V  S  W  A  E  L  A  Q  S  K  P  L  S  Q  L  P  S  F  R  R  S  F  L  T  P  R  C  P  S  F  Y  D  P  I  I  D  T  M  Y  L  P  I  S  A  L  K  Q  E  T  A  N  I  D  H  D  A  D  E  I  I  S  R  I  Y  Y  V  K  A  E  E  I  R  R  L  Q  S  L  A  N  C  N  N  T  T  F  T  K  L  E  A  F  S  A  F  L  W  K  T  I  A  S  D  T  N  N  K  F  R  L  G  I  V  V  N  G  R  S  R  L  S  N  G  D  E  E  Q  A  K  I  L  E  G  Y  F  G  N  V  L  S  I  P  F  G  E  K  K  V  E  E  L  K  E  K  S  L  S  W  V  A  S  A  V  H  E  F  L  E  H  V  V  T  R  E  H  F  L  G  L  I  N  W  V  E  N  H  R  P  E  P  A  L  A  R  I  Y  A  T  N  E  D  T  P  A  L  V  V  S  S  G  Q  Q  F  P  V  R  K  I  E  F  G  W  G  E  A  V  F  G  S  Y  H  F  P  W  E  G  K  S  G  Y  V  M  P  M  P  S  P  K  G  N  G  D  W  I  V  Y  M  H  M  L  K  G  Q  I  D  L  I  E  A  I  A  S  N  V  F  K  P  L  T  A  D  Y  L  S  L  K  *  S  I  N  V  C  V  Y  I  C  T  R  R  S  E  G  E  L  W  S  N  E  N  V  V  C  F  R  L  T  H  R  L  W  V  Q  V  *  K  Q  I  T  I  L  V  F  I  Q  H  D  L  L  T  *  D  V  F  C  I  K  T  T  L  I  Y  I  L  S  L  F  </second_frame>
            <third_frame>   R  F  K  S  L  S  S  I  L  S  L  N  K  K  Q  K  I  Y  L  R  N  I  N  R  W  V  P  K  R  T  S  M  *  S  *  *  K  Q  R  W  *  Q  Q  C  C  Q  C  K  S  I  G  Y  H  S  P  I  L  I  C  F  Y  L  Q  W  M  L  E  Y  S  Y  V  I  K  I  P  L  F  L  E  Y  C  Q  K  I  G  H  L  I  P  W  S  M  F  L  R  C  L  W  V  R  L  W  F  H  T  M  H  L  L  E  S  *  F  K  T  L  L  E  S  P  K  F  C  V  T  M  L  E  W  I  S  *  N  L  G  L  M  *  S  L  K  R  S  T  F  I  I  R  M  K  A  *  K  A  S  L  Y  Q  R  R  S  M  V  Y  *  L  F  R :   L  Q  N  *  N  V  E  E  *  W  W  V  V  H  L  I  I  E  L  L  M  L  T  L  S  T  C  F  L  Y  H  G  L  S  *  L  S  P  N  H  S  L  S  Y  H  L  S  D  D  L  F  L  L  R  G  V  P  L  S  M  I  L  *  L  I  P  C  T  Y  L  S  Q  P  *  N  R  K  P  Q  I  L  I  M  M  L  M  K  L  *  V  E  F  T  M  L  R  P  K  K  S  G  A  S  N  H  *  P  I  V  T  T  Q  R  L  L  N  L  K  H  S  A  L  S  Y  G  K  R  *  P  V  I  L  I  T  S  S  G  L  E  L  W  L  M  E  E  V  D  *  A  T  E  M  K  N  K  P  R  Y  *  K  G  I  L  G  M  F  F  P  S  H  L  G  K  K  K  L  R  N  *  K  R  N  H  *  V  G  L  Q  V  Q  C  M  S  F  L  N  M  L  *  Q  E  N  I  F  L  G  *  *  I  G  L  R  I  I  V  R  S  Q  L  *  Q  E  F  M  P  R  M  K  I  H  L  R  W  W  C  H  R  G  N  N  F  R  *  G  R  L  S  L  D  G  E  R  R  C  L  V  R  T  I  F  H  G  K  G  N  Q  D  M  *  C  Q  C  Q  V  Q  K  E  M  E  I  G  L  F  T  C  I  C  *  R  D  K  L  I  *  L  R  L  L  R  Q  M  C  S  S  P  S  L  Q  I  I  S  V  *  S  N  Q  S  M  F  V  Y  T  Y  V  L  G  D  Q  K  G  S  F  G  A  M  K  T  L  F  V  S  V  *  L  I  G  C  G  F  K  Y  R  N  K  L  Q  Y  L  C  L  Y  N  T  T  Y  *  H  R  M  F  S  A  *  K  L  L  *  Y  I  Y  *  A  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44081" stop="43650"/>
                    <exon start="43026" stop="42082"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGAKKDFNVKLIKTEVVAAMLPMQEHWLSQSNLDLLLPPVDVGVFLCYQNPIISGILSKNWSFDSMVNVLKVSLGETLVSYYAFAGELIQNLAGEPEILCNNAGVDFIESWADVELKEINFHNPDESIEGKLVPKKKHGVLAVQVTELKCGGVVVGCTFDHRVADAYSFNMFLVSWAELAQSKPLSQLPSFRRSFLTPRCPSFYDPIIDTMYLPISALKQETANIDHDADEIISRIYYVKAEEIRRLQSLANCNNTTFTKLEAFSAFLWKTIASDTNNKFRLGIVVNGRSRLSNGDEEQAKILEGYFGNVLSIPFGEKKVEELKEKSLSWVASAVHEFLEHVVTREHFLGLINWVENHRPEPALARIYATNEDTPALVVSSGQQFPVRKIEFGWGEAVFGSYHFPWEGKSGYVMPMPSPKGNGDWIVYMHMLKGQIDLIEAIASNVFKPLTADYLSLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="62279" PGL_stop="59717"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62279" e_stop="61881"/>
            <exon e_start="61018" e_stop="60821"/>
            <exon e_start="60538" e_stop="59823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.630" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62279" e_stop="61881" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.630">
            <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61018" e_stop="60821" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="60538" e_stop="59823" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62279" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62278" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62273" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="61881"/>
              <exon start="61018" stop="60821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="61881"/>
              <exon start="61018" stop="60844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62260" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62260" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62259" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62259" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62259" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62258" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62257" stop="61881"/>
              <exon start="61018" stop="60935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62257" stop="61881"/>
              <exon start="61018" stop="60967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62257" stop="61881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62253" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62031" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61998" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60969" stop="60821"/>
              <exon start="60538" stop="59845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60946" stop="60821"/>
              <exon start="60538" stop="60147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60335" stop="59833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60300" stop="59833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60252" stop="59823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352283" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCCCTATCGAAAGCCTTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT : GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA : TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCGCGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTGGTATTTGTTTTGTAATCCATCCTATTTTATATGAATATTGTTTTCCTTGTGTGCTAATGTTGGAGC</gDNA_template>
            <first_frame> H  P  Y  R  K  P  L  I  C  F  L  D  R  H  L  N  *  V  M  G  F  R  L  S  H  L  S  L  A  L  S  F  V  A  L  A  L  A  G  V  A  I  Y  R  N  T  Y  E  A  I  I  M  K  N  G  S  L  L  K  N  V  S  P  D  F  D  S  L  E  S  G  V  A  S  I  L  T  L  N  N  N  K  K  R  N  S  D  K  Y  L  R  Q  Q  L  T  P  E  A  C  V  F  S  A  V  R  A  V  V  D  S  A  I  D  A  E  T  R  M  G  A  S  L  I  R  L  H  F  H  D  C  F  V  D  :  G  C  D  G  G  I  L  L  D  D  I  N  G  T  F  T  G  E  Q  N  S  P  P  N  A  N  S  A  R  G  Y  E  V  I  A  Q  A  K  Q  S  V  I  N  T  C  P  N  V  S  V  S  C  A  D  I  L  A  I  A  A  R  D  S  V  A  K  :  L  G  G  Q  T  Y  S  V  A  L  G  R  S  D  A  R  T  A  N  F  S  G  A  I  N  Q  L  P  A  P  F  D  N  L  T  V  Q  I  Q  K  F  S  D  K  N  F  T  L  R  E  M  V  A  L  A  G  A  H  T  V  G  F  A  R  C  S  T  V  C  T  S  G  N  V  N  P  A  A  Q  L  Q  C  N  C  S  A  T  L  T  D  S  D  L  Q  Q  L  D  T  T  P  T  M  F  D  K  V  Y  Y  D  N  L  N  S  N  Q  G  I  M  F  S  D  Q  V  L  T  G  D  A  T  T  A  G  F  V  T  D  Y  S  N  D  V  N  V  F  L  G  D  F  A  A  A  M  I  K  M  G  D  L  P  P  S  A  G  A  Q  L  E  I  R  D  V  C  S  R  V  N  P  T  S  V  A  S  M  *  K  I  R  K  F  *  L  T  Y  L  A  T  S  C  F  M  F  S  S  K  *  K  N  H  W  L  Q  N  V  V  W  F  W  Y  L  F  C  N  P  S  Y  F  I  *  I  L  F  S  L  C  A  N  V  G   </first_frame>
            <second_frame>  I  P  I  E  S  L  *  F  V  S  S  I  D  I  *  I  K  *  W  V  F  V  *  V  I  *  V  L  H  *  V  L  W  H  L  H  L  Q  V  L  L  F  I  E  I  L  M  K  P  S  S  *  K  T  V  H  S  S  K  M  F  L  Q  I  S  I  R  W  N  Q  A  *  P  V  F  *  P  *  I  I  I  R  R  E  I  Q  T  S  T  *  D  S  N  *  L  R  R  H  A  F  S  Q  L  Y  E  Q  L  W  T  V  L  L  M  Q  K  L  A  W  E  L  L  S  F  V  S  T  F  M  T  A  S  L  M :   V  V  M  E  V  F  C  *  M  I  L  M  E  H  L  Q  G  N  K  T  H  H  P  T  P  T  Q  P  E  V  M  K  *  *  H  K  L  N  K  V  S  *  T  H  A  P  T  Y  L  Y  L  V  P  T  Y  *  L  L  L  L  V  I  L  L  L  N :   *  E  D  K  L  I  A  L  H  *  G  E  A  M  L  E  L  P  T  L  V  V  L  *  I  N  F  Q  L  H  S  T  T  *  Q  S  K  Y  R  N  S  A  T  K  I  S  P  S  V  K  W  L  H  *  L  V  H  T  R  *  V  S  P  G  V  P  Q  F  A  P  A  V  T  L  I  L  P  H  N  S  N  A  T  A  P  P  R  *  L  I  L  I  C  N  N  W  I  L  L  L  L  C  S  T  K  F  T  T  I  T  *  T  A  T  K  A  *  C  F  Q  I  K  F  *  P  G  M  L  Q  L  L  V  L  *  R  I  I  A  T  M  *  T  F  S  L  E  I  L  L  L  P  *  S  R  W  E  T  C  P  P  P  P  A  L  N  W  K  F  V  M  F  V  A  G  L  I  P  L  Q  W  L  L  C  E  K  F  G  N  F  N  *  L  I  S  R  L  V  A  S  C  F  L  Q  N  K  R  I  T  G  S  R  M  W  F  G  F  G  I  C  F  V  I  H  P  I  L  Y  E  Y  C  F  P  C  V  L  M  L  E  </second_frame>
            <third_frame>   S  L  S  K  A  F  N  L  F  P  R  *  T  F  K  L  S  D  G  F  S  F  E  S  F  E  S  C  I  E  F  C  G  T  C  T  C  R  C  C  Y  L  *  K  Y  L  *  S  H  H  H  E  K  R  F  T  P  Q  K  C  F  S  R  F  R  F  V  G  I  R  R  S  Q  Y  F  N  L  K  *  *  *  E  E  K  F  R  Q  V  L  E  T  A  T  N  S  G  G  M  R  F  L  S  C  T  S  S  C  G  Q  C  Y  *  C  R  N  S  H  G  S  F  S  H  S  S  P  L  S  *  L  L  R  *   : W  L  *  W  R  Y  S  A  R  *  Y  *  W  N  I  Y  R  G  T  K  L  T  T  Q  R  Q  L  S  Q  R  L  *  S  N  S  T  S  *  T  K  C  H  K  H  M  P  Q  R  I  C  I  L  C  R  H  I  S  Y  C  C  S  *  F  C  C  *   : I  R  R  T  N  L  *  R  C  I  R  E  K  R  C  *  N  C  Q  L  *  W  C  Y  K  S  T  S  S  S  I  R  Q  P  N  S  P  N  T  E  I  Q  R  Q  K  F  H  P  P  *  N  G  C  T  S  W  C  T  H  G  R  F  R  Q  V  F  H  S  L  H  Q  R  *  R  *  S  C  R  T  T  P  M  Q  L  L  R  H  A  N  *  F  *  F  A  T  I  G  Y  Y  S  Y  Y  V  R  Q  S  L  L  R  *  L  K  Q  Q  P  R  H  N  V  F  R  S  S  F  D  R  G  C  Y  N  C  W  F  C  N  G  L  *  Q  R  C  E  R  F  P  W  R  F  C  C  C  H  D  Q  D  G  R  L  A  P  L  R  R  R  S  I  G  N  S  *  C  L  *  Q  G  *  S  H  F  S  G  F  Y  V  K  N  S  E  I  L  I  N  L  S  R  D  *  L  L  H  V  F  F  K  I  K  E  S  L  A  P  E  C  G  L  V  L  V  F  V  L  *  S  I  L  F  Y  M  N  I  V  F  L  V  C  *  C  W  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62228" stop="61881"/>
                    <exon start="61018" stop="60821"/>
                    <exon start="60538" stop="59987"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMGFRLSHLSLALSFVALALAGVAIYRNTYEAIIMKNGSLLKNVSPDFDSLESGVASILTLNNNKKRNSDKYLRQQLTPEACVFSAVRAVVDSAIDAETRMGASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVINTCPNVSVSCADILAIAARDSVAKLGGQTYSVALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLREMVALAGAHTVGFARCSTVCTSGNVNPAAQLQCNCSATLTDSDLQQLDTTPTMFDKVYYDNLNSNQGIMFSDQVLTGDATTAGFVTDYSNDVNVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVNPTSVASM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62279" e_stop="61881"/>
            <exon e_start="61018" e_stop="60821"/>
            <exon e_start="60538" e_stop="59866"/>
            <exon e_start="59765" e_stop="59717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.630" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.929" e_score="0.970"/>
          <exon-only e_score="0.551"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62279" e_stop="61881" e_length="399"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.630">
            <gDNA_intron_boundary i_start="61880" i_stop="61019" i_length="862"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61018" e_stop="60821" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="60820" i_stop="60539" i_length="282"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="60538" e_stop="59866" e_length="673"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="59865" i_stop="59766" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="0.551">
            <gDNA_exon_boundary e_start="59765" e_stop="59717" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62279" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62278" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62273" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="61881"/>
              <exon start="61018" stop="60821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62262" stop="61881"/>
              <exon start="61018" stop="60844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62260" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62260" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62259" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62259" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62259" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62258" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62257" stop="61881"/>
              <exon start="61018" stop="60935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62257" stop="61881"/>
              <exon start="61018" stop="60967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62257" stop="61881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62253" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62031" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61998" stop="61881"/>
              <exon start="61018" stop="60821"/>
              <exon start="60538" stop="60364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60946" stop="60821"/>
              <exon start="60538" stop="60147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60939" stop="60821"/>
              <exon start="60538" stop="59866"/>
              <exon start="59765" stop="59717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCCCTATCGAAAGCCTTTAATTTGTTTCCTCGATAGACATTTAAATTAAGTGATGGGTTTTCGTTTGAGTCATTTGAGTCTTGCATTGAGTTTTGTGGCACTTGCACTTGCAGGTGTTGCTATTTATAGAAATACTTATGAAGCCATCATCATGAAAAACGGTTCACTCCTCAAAAATGTTTCTCCAGATTTCGATTCGTTGGAATCAGGCGTAGCCAGTATTTTAACCTTAAATAATAATAAGAAGAGAAATTCAGACAAGTACTTGAGACAGCAACTAACTCCGGAGGCATGCGTTTTCTCAGCTGTACGAGCAGTTGTGGACAGTGCTATTGATGCAGAAACTCGCATGGGAGCTTCTCTCATTCGTCTCCACTTTCATGACTGCTTCGTTGAT : GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTTACAGGGGAACAAAACTCACCACCCAACGCCAACTCAGCCAGAGGTTATGAAGTAATAGCACAAGCTAAACAAAGTGTCATAAACACATGCCCCAACGTATCTGTATCTTGTGCCGACATATTAGCTATTGCTGCTCGTGATTCTGTTGCTAAA : TTAGGAGGACAAACTTATAGCGTTGCATTAGGGAGAAGCGATGCTAGAACTGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATTCGACAACCTAACAGTCCAAATACAGAAATTCAGCGACAAAAATTTCACCCTCCGTGAAATGGTTGCACTAGCTGGTGCACACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCTGATTTGCAACAATTGGATACTACTCCTACTATGTTCGACAAAGTTTACTACGATAACTTAAACAGCAACCAAGGCATAATGTTTTCAGATCAAGTTTTGACCGGGGATGCTACAACTGCTGGTTTTGTAACGGATTATAGCAACGATGTGAACGTTTTCCTTGGAGATTTTGCTGCTGCCATGATCAAGATGGGAGACTTGCCCCCCTCCGCCGGCGCTCAATTGGAAATTCGTGATGTTTGTAGCAGGGTTAATCCCACTTCAGTGGCTTCTATGTGAAAAATTCGGAAATTTTAATTAACTTATCTCGCGACTAGTTGCTTCATGTTTTCTTCAAAATAAAAGAATCACTGGCTCCAGAATGTGGTTTGGTTTTGGTATTTGTTTTGTAATCCATCCT : GACTCAAATAGCCTTATGAAAACGAAAATAAGAAAGGTGTGAGGATACC</gDNA_template>
            <first_frame> H  P  Y  R  K  P  L  I  C  F  L  D  R  H  L  N  *  V  M  G  F  R  L  S  H  L  S  L  A  L  S  F  V  A  L  A  L  A  G  V  A  I  Y  R  N  T  Y  E  A  I  I  M  K  N  G  S  L  L  K  N  V  S  P  D  F  D  S  L  E  S  G  V  A  S  I  L  T  L  N  N  N  K  K  R  N  S  D  K  Y  L  R  Q  Q  L  T  P  E  A  C  V  F  S  A  V  R  A  V  V  D  S  A  I  D  A  E  T  R  M  G  A  S  L  I  R  L  H  F  H  D  C  F  V  D  :  G  C  D  G  G  I  L  L  D  D  I  N  G  T  F  T  G  E  Q  N  S  P  P  N  A  N  S  A  R  G  Y  E  V  I  A  Q  A  K  Q  S  V  I  N  T  C  P  N  V  S  V  S  C  A  D  I  L  A  I  A  A  R  D  S  V  A  K  :  L  G  G  Q  T  Y  S  V  A  L  G  R  S  D  A  R  T  A  N  F  S  G  A  I  N  Q  L  P  A  P  F  D  N  L  T  V  Q  I  Q  K  F  S  D  K  N  F  T  L  R  E  M  V  A  L  A  G  A  H  T  V  G  F  A  R  C  S  T  V  C  T  S  G  N  V  N  P  A  A  Q  L  Q  C  N  C  S  A  T  L  T  D  S  D  L  Q  Q  L  D  T  T  P  T  M  F  D  K  V  Y  Y  D  N  L  N  S  N  Q  G  I  M  F  S  D  Q  V  L  T  G  D  A  T  T  A  G  F  V  T  D  Y  S  N  D  V  N  V  F  L  G  D  F  A  A  A  M  I  K  M  G  D  L  P  P  S  A  G  A  Q  L  E  I  R  D  V  C  S  R  V  N  P  T  S  V  A  S  M  *  K  I  R  K  F  *  L  T  Y  L  A  T  S  C  F  M  F  S  S  K  *  K  N  H  W  L  Q  N  V  V  W  F  W  Y  L  F  C  N  P  S   : *  L  K  *  P  Y  E  N  E  N  K  K  G  V  R  I   </first_frame>
            <second_frame>  I  P  I  E  S  L  *  F  V  S  S  I  D  I  *  I  K  *  W  V  F  V  *  V  I  *  V  L  H  *  V  L  W  H  L  H  L  Q  V  L  L  F  I  E  I  L  M  K  P  S  S  *  K  T  V  H  S  S  K  M  F  L  Q  I  S  I  R  W  N  Q  A  *  P  V  F  *  P  *  I  I  I  R  R  E  I  Q  T  S  T  *  D  S  N  *  L  R  R  H  A  F  S  Q  L  Y  E  Q  L  W  T  V  L  L  M  Q  K  L  A  W  E  L  L  S  F  V  S  T  F  M  T  A  S  L  M :   V  V  M  E  V  F  C  *  M  I  L  M  E  H  L  Q  G  N  K  T  H  H  P  T  P  T  Q  P  E  V  M  K  *  *  H  K  L  N  K  V  S  *  T  H  A  P  T  Y  L  Y  L  V  P  T  Y  *  L  L  L  L  V  I  L  L  L  N :   *  E  D  K  L  I  A  L  H  *  G  E  A  M  L  E  L  P  T  L  V  V  L  *  I  N  F  Q  L  H  S  T  T  *  Q  S  K  Y  R  N  S  A  T  K  I  S  P  S  V  K  W  L  H  *  L  V  H  T  R  *  V  S  P  G  V  P  Q  F  A  P  A  V  T  L  I  L  P  H  N  S  N  A  T  A  P  P  R  *  L  I  L  I  C  N  N  W  I  L  L  L  L  C  S  T  K  F  T  T  I  T  *  T  A  T  K  A  *  C  F  Q  I  K  F  *  P  G  M  L  Q  L  L  V  L  *  R  I  I  A  T  M  *  T  F  S  L  E  I  L  L  L  P  *  S  R  W  E  T  C  P  P  P  P  A  L  N  W  K  F  V  M  F  V  A  G  L  I  P  L  Q  W  L  L  C  E  K  F  G  N  F  N  *  L  I  S  R  L  V  A  S  C  F  L  Q  N  K  R  I  T  G  S  R  M  W  F  G  F  G  I  C  F  V  I  H  P  :  D  S  N  S  L  M  K  T  K  I  R  K  V  *  G  Y  </second_frame>
            <third_frame>   S  L  S  K  A  F  N  L  F  P  R  *  T  F  K  L  S  D  G  F  S  F  E  S  F  E  S  C  I  E  F  C  G  T  C  T  C  R  C  C  Y  L  *  K  Y  L  *  S  H  H  H  E  K  R  F  T  P  Q  K  C  F  S  R  F  R  F  V  G  I  R  R  S  Q  Y  F  N  L  K  *  *  *  E  E  K  F  R  Q  V  L  E  T  A  T  N  S  G  G  M  R  F  L  S  C  T  S  S  C  G  Q  C  Y  *  C  R  N  S  H  G  S  F  S  H  S  S  P  L  S  *  L  L  R  *   : W  L  *  W  R  Y  S  A  R  *  Y  *  W  N  I  Y  R  G  T  K  L  T  T  Q  R  Q  L  S  Q  R  L  *  S  N  S  T  S  *  T  K  C  H  K  H  M  P  Q  R  I  C  I  L  C  R  H  I  S  Y  C  C  S  *  F  C  C  *   : I  R  R  T  N  L  *  R  C  I  R  E  K  R  C  *  N  C  Q  L  *  W  C  Y  K  S  T  S  S  S  I  R  Q  P  N  S  P  N  T  E  I  Q  R  Q  K  F  H  P  P  *  N  G  C  T  S  W  C  T  H  G  R  F  R  Q  V  F  H  S  L  H  Q  R  *  R  *  S  C  R  T  T  P  M  Q  L  L  R  H  A  N  *  F  *  F  A  T  I  G  Y  Y  S  Y  Y  V  R  Q  S  L  L  R  *  L  K  Q  Q  P  R  H  N  V  F  R  S  S  F  D  R  G  C  Y  N  C  W  F  C  N  G  L  *  Q  R  C  E  R  F  P  W  R  F  C  C  C  H  D  Q  D  G  R  L  A  P  L  R  R  R  S  I  G  N  S  *  C  L  *  Q  G  *  S  H  F  S  G  F  Y  V  K  N  S  E  I  L  I  N  L  S  R  D  *  L  L  H  V  F  F  K  I  K  E  S  L  A  P  E  C  G  L  V  L  V  F  V  L  *  S  I  L :   T  Q  I  A  L  *  K  R  K  *  E  R  C  E  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62228" stop="61881"/>
                    <exon start="61018" stop="60821"/>
                    <exon start="60538" stop="59987"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMGFRLSHLSLALSFVALALAGVAIYRNTYEAIIMKNGSLLKNVSPDFDSLESGVASILTLNNNKKRNSDKYLRQQLTPEACVFSAVRAVVDSAIDAETRMGASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVINTCPNVSVSCADILAIAARDSVAKLGGQTYSVALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLREMVALAGAHTVGFARCSTVCTSGNVNPAAQLQCNCSATLTDSDLQQLDTTPTMFDKVYYDNLNSNQGIMFSDQVLTGDATTAGFVTDYSNDVNVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVNPTSVASM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="66617" PGL_stop="64229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66617" e_stop="66227"/>
            <exon e_start="65230" e_stop="65033"/>
            <exon e_start="64907" e_stop="64229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66617" e_stop="66227" e_length="391"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.995">
            <gDNA_intron_boundary i_start="66226" i_stop="65231" i_length="996"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65230" e_stop="65033" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65032" i_stop="64908" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64907" e_stop="64229" e_length="679"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66617" stop="66227"/>
              <exon start="65230" stop="65033"/>
              <exon start="64907" stop="64640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66605" stop="66227"/>
              <exon start="65230" stop="65146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66594" stop="66227"/>
              <exon start="65230" stop="65033"/>
              <exon start="64907" stop="64566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66476" stop="66227"/>
              <exon start="65230" stop="65033"/>
              <exon start="64907" stop="64780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66476" stop="66227"/>
              <exon start="65230" stop="65033"/>
              <exon start="64907" stop="64802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66476" stop="66227"/>
              <exon start="65230" stop="65033"/>
              <exon start="64907" stop="64842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66476" stop="66227"/>
              <exon start="65230" stop="65084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66465" stop="66227"/>
              <exon start="65230" stop="65033"/>
              <exon start="64907" stop="64683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65155" stop="65033"/>
              <exon start="64907" stop="64267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65155" stop="65033"/>
              <exon start="64907" stop="64494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64753" stop="64241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64695" stop="64229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAAGGCCTCTGTTTCTTCCAAATAGACATTTAATAATTTCTTTAAGTGATGGGTTTTCGTTTGAGCCTTTTGAGCCTTGCGGTGAGCCTTGTGGCACTTGCACTCGCAGGTGTTGCCATTTATAGAAATACTTATGAGGCCATGATCATGAATAACGGATCACTCCTCCAAAATATCTCTCCAGATATCGATTCGTTGGAATCAGGCGAAGTCAGTATTTTAATTTTAAATGATAAGAAGAAAAATTCAGACAAATATTTGAGTCAGCAATTAACTCAGGAGTCTTGCGTTTTCTCAGCTGTGAAAGGAGTTGTGGACAGTGCCATTGATAATGAAACGCGCATGGGAGCTTCTCTCATTCGTCTACATTTCCATGACTGCTTTGTTGAT : GGTTGTGATGGAGGTATTCTGCTAGATGATATTAATGGAACATTCACCGGGGAACAAAACTCACCACCCAACAACAACTCAGTCAGAGGCTTTGAAGTGATAGCACAAGCTAAACAAAGTGTTGTAGATTCATGCCCCAACATATCTGTATCTTGTGCTGATATTTTAGCTATTGCTGCTCGTGATTCCCTTGCTAAA : TTAGGAGGACAAACTTATACCGTTGCACTAGGGAGAAGCGATGCTACAACAGCCAACTTTAGTGGTGCTATAAATCAACTTCCAGCTCCATCCGACAACCTAACTGTTCAAATACAGAAATTCAGCGACAAAAATTTCACTGTCCGTGAAATGGTGGCACTAGCTGGCGCGCACACGGTAGGTTTCGCCAGGTGTTCCACAGTTTGCACCAGCGGTAACGTTAATCCTGCCGCACAACTCCAATGCAACTGCTCCGCCACGCTAACTGATTCCGATTTGCAACAATTGGATACAACTCCTGCTGTGTTCGACAAAGTTTACTATGATAACTTAAACAACAACCAAGGGATAATGTTCTCGGATCAAGTTTTGACTGGGAATACTACAACTGCTGGTTTTGTAACCACTTATAGCAACAATGTTACTGTTTTTCTTGAAGATTTTGCTGCTGCTATGATCAAAATGGGGAATTTACCTCCCTCCGCTGGCGCTCAATTGGAAATTCGCGATGTTTGCAGCAGGGTTAATCCCACTTCTGTGGCTTCTATGTGAAAAATTTCGGAAATTTTAAGTAGCTTTTATCTTACTATTTGTCGCATCATGTTTTCATCTTTTTCAGTATTGATGCAATAATATATATGTCCCTATGTTCGCAGTGTTTTTAATCCAATTTATTCTT</gDNA_template>
            <first_frame> L  R  P  L  F  L  P  N  R  H  L  I  I  S  L  S  D  G  F  S  F  E  P  F  E  P  C  G  E  P  C  G  T  C  T  R  R  C  C  H  L  *  K  Y  L  *  G  H  D  H  E  *  R  I  T  P  P  K  Y  L  S  R  Y  R  F  V  G  I  R  R  S  Q  Y  F  N  F  K  *  *  E  E  K  F  R  Q  I  F  E  S  A  I  N  S  G  V  L  R  F  L  S  C  E  R  S  C  G  Q  C  H  *  *  *  N  A  H  G  S  F  S  H  S  S  T  F  P  *  L  L  C  *   : W  L  *  W  R  Y  S  A  R  *  Y  *  W  N  I  H  R  G  T  K  L  T  T  Q  Q  Q  L  S  Q  R  L  *  S  D  S  T  S  *  T  K  C  C  R  F  M  P  Q  H  I  C  I  L  C  *  Y  F  S  Y  C  C  S  *  F  P  C  *   : I  R  R  T  N  L  Y  R  C  T  R  E  K  R  C  Y  N  S  Q  L  *  W  C  Y  K  S  T  S  S  S  I  R  Q  P  N  C  S  N  T  E  I  Q  R  Q  K  F  H  C  P  *  N  G  G  T  S  W  R  A  H  G  R  F  R  Q  V  F  H  S  L  H  Q  R  *  R  *  S  C  R  T  T  P  M  Q  L  L  R  H  A  N  *  F  R  F  A  T  I  G  Y  N  S  C  C  V  R  Q  S  L  L  *  *  L  K  Q  Q  P  R  D  N  V  L  G  S  S  F  D  W  E  Y  Y  N  C  W  F  C  N  H  L  *  Q  Q  C  Y  C  F  S  *  R  F  C  C  C  Y  D  Q  N  G  E  F  T  S  L  R  W  R  S  I  G  N  S  R  C  L  Q  Q  G  *  S  H  F  C  G  F  Y  V  K  N  F  G  N  F  K  *  L  L  S  Y  Y  L  S  H  H  V  F  I  F  F  S  I  D  A  I  I  Y  M  S  L  C  S  Q  C  F  *  S  N  L  F   </first_frame>
            <second_frame>  *  G  L  C  F  F  Q  I  D  I  *  *  F  L  *  V  M  G  F  R  L  S  L  L  S  L  A  V  S  L  V  A  L  A  L  A  G  V  A  I  Y  R  N  T  Y  E  A  M  I  M  N  N  G  S  L  L  Q  N  I  S  P  D  I  D  S  L  E  S  G  E  V  S  I  L  I  L  N  D  K  K  K  N  S  D  K  Y  L  S  Q  Q  L  T  Q  E  S  C  V  F  S  A  V  K  G  V  V  D  S  A  I  D  N  E  T  R  M  G  A  S  L  I  R  L  H  F  H  D  C  F  V  D  :  G  C  D  G  G  I  L  L  D  D  I  N  G  T  F  T  G  E  Q  N  S  P  P  N  N  N  S  V  R  G  F  E  V  I  A  Q  A  K  Q  S  V  V  D  S  C  P  N  I  S  V  S  C  A  D  I  L  A  I  A  A  R  D  S  L  A  K  :  L  G  G  Q  T  Y  T  V  A  L  G  R  S  D  A  T  T  A  N  F  S  G  A  I  N  Q  L  P  A  P  S  D  N  L  T  V  Q  I  Q  K  F  S  D  K  N  F  T  V  R  E  M  V  A  L  A  G  A  H  T  V  G  F  A  R  C  S  T  V  C  T  S  G  N  V  N  P  A  A  Q  L  Q  C  N  C  S  A  T  L  T  D  S  D  L  Q  Q  L  D  T  T  P  A  V  F  D  K  V  Y  Y  D  N  L  N  N  N  Q  G  I  M  F  S  D  Q  V  L  T  G  N  T  T  T  A  G  F  V  T  T  Y  S  N  N  V  T  V  F  L  E  D  F  A  A  A  M  I  K  M  G  N  L  P  P  S  A  G  A  Q  L  E  I  R  D  V  C  S  R  V  N  P  T  S  V  A  S  M  *  K  I  S  E  I  L  S  S  F  Y  L  T  I  C  R  I  M  F  S  S  F  S  V  L  M  Q  *  Y  I  C  P  Y  V  R  S  V  F  N  P  I  Y  S  </second_frame>
            <third_frame>   K  A  S  V  S  S  K  *  T  F  N  N  F  F  K  *  W  V  F  V  *  A  F  *  A  L  R  *  A  L  W  H  L  H  S  Q  V  L  P  F  I  E  I  L  M  R  P  *  S  *  I  T  D  H  S  S  K  I  S  L  Q  I  S  I  R  W  N  Q  A  K  S  V  F  *  F  *  M  I  R  R  K  I  Q  T  N  I  *  V  S  N  *  L  R  S  L  A  F  S  Q  L  *  K  E  L  W  T  V  P  L  I  M  K  R  A  W  E  L  L  S  F  V  Y  I  S  M  T  A  L  L  M :   V  V  M  E  V  F  C  *  M  I  L  M  E  H  S  P  G  N  K  T  H  H  P  T  T  T  Q  S  E  A  L  K  *  *  H  K  L  N  K  V  L  *  I  H  A  P  T  Y  L  Y  L  V  L  I  F  *  L  L  L  L  V  I  P  L  L  N :   *  E  D  K  L  I  P  L  H  *  G  E  A  M  L  Q  Q  P  T  L  V  V  L  *  I  N  F  Q  L  H  P  T  T  *  L  F  K  Y  R  N  S  A  T  K  I  S  L  S  V  K  W  W  H  *  L  A  R  T  R  *  V  S  P  G  V  P  Q  F  A  P  A  V  T  L  I  L  P  H  N  S  N  A  T  A  P  P  R  *  L  I  P  I  C  N  N  W  I  Q  L  L  L  C  S  T  K  F  T  M  I  T  *  T  T  T  K  G  *  C  S  R  I  K  F  *  L  G  I  L  Q  L  L  V  L  *  P  L  I  A  T  M  L  L  F  F  L  K  I  L  L  L  L  *  S  K  W  G  I  Y  L  P  P  L  A  L  N  W  K  F  A  M  F  A  A  G  L  I  P  L  L  W  L  L  C  E  K  F  R  K  F  *  V  A  F  I  L  L  F  V  A  S  C  F  H  L  F  Q  Y  *  C  N  N  I  Y  V  P  M  F  A  V  F  L  I  Q  F  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66571" stop="66227"/>
                    <exon start="65230" stop="65033"/>
                    <exon start="64907" stop="64356"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMGFRLSLLSLAVSLVALALAGVAIYRNTYEAMIMNNGSLLQNISPDIDSLESGEVSILILNDKKKNSDKYLSQQLTQESCVFSAVKGVVDSAIDNETRMGASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNNNSVRGFEVIAQAKQSVVDSCPNISVSCADILAIAARDSLAKLGGQTYTVALGRSDATTANFSGAINQLPAPSDNLTVQIQKFSDKNFTVREMVALAGAHTVGFARCSTVCTSGNVNPAAQLQCNCSATLTDSDLQQLDTTPAVFDKVYYDNLNNNQGIMFSDQVLTGNTTTAGFVTTYSNNVTVFLEDFAAAMIKMGNLPPSAGAQLEIRDVCSRVNPTSVASM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="75616" PGL_stop="74940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75616" e_stop="75041"/>
            <exon e_start="74955" e_stop="74940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.986"/>
          <exon-only e_score="0.812"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="75616" e_stop="75041" e_length="576"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75040" i_stop="74956" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.812">
            <gDNA_exon_boundary e_start="74955" e_stop="74940" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75616" stop="75041"/>
              <exon start="74955" stop="74940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734409" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACATCGATAATATCCATTTTCGAAAATTCATCGTGTACGTTAATTAATTTTTAAGGCATGGCTACATTGGGACGTGACGTTGTGTTTGAGGATTTTTTTCCATCAATGATGGAGAAACTAGGGTCAGAAGGGTTCTTGAAGGAGCTAAAGAACGGGTTCCGGGCATTGATGGATAAGGAGAGGGAAGTGATCACGTTTGAGAGCTTGAAGAGGAATTCGGCGTTGTTAGGGTTAGAAGGAATGAGTGATGATGAACTAATGTGTATGTTGAGGGAAGGGGATTTGAATGGAGATGATTGCTTGAATGAGAAAGAATTTTGTGTGCTAATGGTAAGGTTGAGCCCTGATTTGATGGAAAAATCGAGAATGTGGTTCGCTCAGAGCATTGAAAATGATCTGATGTAGGCTCGTATTAGCATGTGCTTTATTGAGGGCATTCATTTTGAAGTAGGATTATTAAGCTATTCTAGCTAGGTCTATTAATTTCTATCTTGTTATTTTTTCCTCCTATGTATGTGTCGTCTAGTTTTATTATTAGTGAAGTTCATTGTTTTATTTGCCATTATTAATGTA : CAAAATAAAAAAATAA</gDNA_template>
            <first_frame> K  T  S  I  I  S  I  F  E  N  S  S  C  T  L  I  N  F  *  G  M  A  T  L  G  R  D  V  V  F  E  D  F  F  P  S  M  M  E  K  L  G  S  E  G  F  L  K  E  L  K  N  G  F  R  A  L  M  D  K  E  R  E  V  I  T  F  E  S  L  K  R  N  S  A  L  L  G  L  E  G  M  S  D  D  E  L  M  C  M  L  R  E  G  D  L  N  G  D  D  C  L  N  E  K  E  F  C  V  L  M  V  R  L  S  P  D  L  M  E  K  S  R  M  W  F  A  Q  S  I  E  N  D  L  M  *  A  R  I  S  M  C  F  I  E  G  I  H  F  E  V  G  L  L  S  Y  S  S  *  V  Y  *  F  L  S  C  Y  F  F  L  L  C  M  C  R  L  V  L  L  L  V  K  F  I  V  L  F  A  I  I  N  V  :  Q  N  K  K  I  </first_frame>
            <second_frame>  K  H  R  *  Y  P  F  S  K  I  H  R  V  R  *  L  I  F  K  A  W  L  H  W  D  V  T  L  C  L  R  I  F  F  H  Q  *  W  R  N  *  G  Q  K  G  S  *  R  S  *  R  T  G  S  G  H  *  W  I  R  R  G  K  *  S  R  L  R  A  *  R  G  I  R  R  C  *  G  *  K  E  *  V  M  M  N  *  C  V  C  *  G  K  G  I  *  M  E  M  I  A  *  M  R  K  N  F  V  C  *  W  *  G  *  A  L  I  *  W  K  N  R  E  C  G  S  L  R  A  L  K  M  I  *  C  R  L  V  L  A  C  A  L  L  R  A  F  I  L  K  *  D  Y  *  A  I  L  A  R  S  I  N  F  Y  L  V  I  F  S  S  Y  V  C  V  V  *  F  Y  Y  *  *  S  S  L  F  Y  L  P  L  L  M  Y :   K  I  K  K  * </second_frame>
            <third_frame>   N  I  D  N  I  H  F  R  K  F  I  V  Y  V  N  *  F  L  R  H  G  Y  I  G  T  *  R  C  V  *  G  F  F  S  I  N  D  G  E  T  R  V  R  R  V  L  E  G  A  K  E  R  V  P  G  I  D  G  *  G  E  G  S  D  H  V  *  E  L  E  E  E  F  G  V  V  R  V  R  R  N  E  *  *  *  T  N  V  Y  V  E  G  R  G  F  E  W  R  *  L  L  E  *  E  R  I  L  C  A  N  G  K  V  E  P  *  F  D  G  K  I  E  N  V  V  R  S  E  H  *  K  *  S  D  V  G  S  Y  *  H  V  L  Y  *  G  H  S  F  *  S  R  I  I  K  L  F  *  L  G  L  L  I  S  I  L  L  F  F  P  P  M  Y  V  S  S  S  F  I  I  S  E  V  H  C  F  I  C  H  Y  *  C   : T  K  *  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75559" stop="75209"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMATLGRDVVFEDFFPSMMEKLGSEGFLKELKNGFRALMDKEREVITFESLKRNSALLGLEGMSDDELMCMLREGDLNGDDCLNEKEFCVLMVRLSPDLMEKSRMWFAQSIENDLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="89195" PGL_stop="89812"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89195" e_stop="89812"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="89195" e_stop="89812" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89195" stop="89812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89229" stop="89750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302873" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATTGGGAGAAGAAAACTTGATAAGAAATGAAGCTGAGCTTAAGCTGTAAGAATATACTTCTTTGTTGTGCTTTTCTTGTTCTGTTTTTTCTTATAACAAATGCTTCATCAGACTCCATTAGTATTAATGAGTTTCTGCAAGATTCAGAAACTTTAGTCTCTAATAACAAAACATTCAAATTGGTTTTTTTTTGTCCTGAGAATTCGGCGAATCGTTATGTTGGTATCATGTTTAATATGAAATCACAATCTGTTATATGGGTAGCCAACAGAGACCAGCCTTTACAAGATTCTAGTGGAAGAGTAACAATATCAGAAGATGGCAATCTTGTAATCTTGAATGGACAGGGAAAGAGTGTATGGTCATCAAATATTTCACCTGCTGTGAGGAATTCTACAGCCCAGCTCTTGGATACTGGAAACTTAGTTTTGAAGGACAACTCAAGTGAGAGAGTTCTATGGGAAAGTTTTAGTGATCTTTCAGATTCCTACTTGCAGAACATGAAACTTGGCACTGATAAGAGTACTAACACCACAAATCTGTTGAAATCATGGAGAAGTCCTGTAGATCCATCTGATGGGAGTTTCTCAGCTGGTATTCAGACTGAAACAATTC</gDNA_template>
            <first_frame> L  I  G  R  R  K  L  D  K  K  *  S  *  A  *  A  V  R  I  Y  F  F  V  V  L  F  L  F  C  F  F  L  *  Q  M  L  H  Q  T  P  L  V  L  M  S  F  C  K  I  Q  K  L  *  S  L  I  T  K  H  S  N  W  F  F  F  V  L  R  I  R  R  I  V  M  L  V  S  C  L  I  *  N  H  N  L  L  Y  G  *  P  T  E  T  S  L  Y  K  I  L  V  E  E  *  Q  Y  Q  K  M  A  I  L  *  S  *  M  D  R  E  R  V  Y  G  H  Q  I  F  H  L  L  *  G  I  L  Q  P  S  S  W  I  L  E  T  *  F  *  R  T  T  Q  V  R  E  F  Y  G  K  V  L  V  I  F  Q  I  P  T  C  R  T  *  N  L  A  L  I  R  V  L  T  P  Q  I  C  *  N  H  G  E  V  L  *  I  H  L  M  G  V  S  Q  L  V  F  R  L  K  Q  F </first_frame>
            <second_frame>  L  L  G  E  E  N  L  I  R  N  E  A  E  L  K  L  *  E  Y  T  S  L  L  C  F  S  C  S  V  F  S  Y  N  K  C  F  I  R  L  H  *  Y  *  *  V  S  A  R  F  R  N  F  S  L  *  *  Q  N  I  Q  I  G  F  F  L  S  *  E  F  G  E  S  L  C  W  Y  H  V  *  Y  E  I  T  I  C  Y  M  G  S  Q  Q  R  P  A  F  T  R  F  *  W  K  S  N  N  I  R  R  W  Q  S  C  N  L  E  W  T  G  K  E  C  M  V  I  K  Y  F  T  C  C  E  E  F  Y  S  P  A  L  G  Y  W  K  L  S  F  E  G  Q  L  K  *  E  S  S  M  G  K  F  *  *  S  F  R  F  L  L  A  E  H  E  T  W  H  *  *  E  Y  *  H  H  K  S  V  E  I  M  E  K  S  C  R  S  I  *  W  E  F  L  S  W  Y  S  D  *  N  N   </second_frame>
            <third_frame>   Y  W  E  K  K  T  *  *  E  M  K  L  S  L  S  C  K  N  I  L  L  C  C  A  F  L  V  L  F  F  L  I  T  N  A  S  S  D  S  I  S  I  N  E  F  L  Q  D  S  E  T  L  V  S  N  N  K  T  F  K  L  V  F  F  C  P  E  N  S  A  N  R  Y  V  G  I  M  F  N  M  K  S  Q  S  V  I  W  V  A  N  R  D  Q  P  L  Q  D  S  S  G  R  V  T  I  S  E  D  G  N  L  V  I  L  N  G  Q  G  K  S  V  W  S  S  N  I  S  P  A  V  R  N  S  T  A  Q  L  L  D  T  G  N  L  V  L  K  D  N  S  S  E  R  V  L  W  E  S  F  S  D  L  S  D  S  Y  L  Q  N  M  K  L  G  T  D  K  S  T  N  T  T  N  L  L  K  S  W  R  S  P  V  D  P  S  D  G  S  F  S  A  G  I  Q  T  E  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89221" stop="89811"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMKLSLSCKNILLCCAFLVLFFLITNASSDSISINEFLQDSETLVSNNKTFKLVFFCPENSANRYVGIMFNMKSQSVIWVANRDQPLQDSSGRVTISEDGNLVILNGQGKSVWSSNISPAVRNSTAQLLDTGNLVLKDNSSERVLWESFSDLSDSYLQNMKLGTDKSTNTTNLLKSWRSPVDPSDGSFSAGIQTETI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="91255" PGL_stop="92405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91255" e_stop="91302"/>
            <exon e_start="91408" e_stop="91651"/>
            <exon e_start="91737" e_stop="91887"/>
            <exon e_start="91963" e_stop="92405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.786" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="91255" e_stop="91302" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.987">
            <gDNA_intron_boundary i_start="91303" i_stop="91407" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91408" e_stop="91651" e_length="244"/>
          </exon>
          <intron i_serial="2" don_prob="0.883" acc_prob="0.984">
            <gDNA_intron_boundary i_start="91652" i_stop="91736" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91737" e_stop="91887" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.786">
            <gDNA_intron_boundary i_start="91888" i_stop="91962" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91963" e_stop="92405" e_length="443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91255" stop="91302"/>
              <exon start="91408" stop="91651"/>
              <exon start="91737" stop="91887"/>
              <exon start="91963" stop="92168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91828" stop="91887"/>
              <exon start="91963" stop="92405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTTTATGAATACATGCCAAAAAGAAGCTTGGATGCCTATCTCTTTG : GTGTACACATTGAAGAGGAATACTTCCTTGATTGGAGCAAACGTGTGATCATCATTGAGGGAATCGGCCGAGGCCTCCTATACCTTCACAGGGATTCAAGACTAAGGATTATCCACAGGGATTTAAAGGCAAGCAACATTTTGTTGGATGAATATCTGAACCCTAAAATTTCAGATTTTGGTATGGCAAGAATTATTGCAGGCAACCAAGATCAAGCCAATACAATTAGGGTTGTTGGAACCTA : TGGTTATATGGCACCTGAATATGCAATGACAGGAAGATTCTCAGAAAAATCAGATGTCTACAGCTTTGGCGTATTGTTACTGGAAATTATTAGCGGAAGGAGGAACACTAGCTTTTACCAAGAGGATGGTGCATTAAGCCTTCTAGCATGG : GCATGGAAGTTGTGGAATGAAAATAAGATTGTCGAATTGGTTGACTCCAAGATAATTGAACTACAGCTCAAAAAGGAGATTCATAGATGTGTACATGTTGGACTATTATGTGTACAAGAATATGCAGAAGACAGGCCAAATGTCTCCACAGTTTTGTCTATGCTCACCCGGGAAATTGATGATTTACCAAGTCCTAAACAACCTGCATTTACAACAAGACCGACCCCTTCCAAGAAAGGCTCCTCTAGAATTCAAGTCTCCGTGAACGATGTTAGCATTACTATTATGGAAGCACGATAGAGATCATATAATTTTAGTGTAGGCATATATCTTATTCATTTCCTGTAATTATTCTTGTATGTGATTCTACATTTAGAATCCAAGAGAAGTTTAAACCGAGCTGAGTCCTTTAGCAGCGAGAATTTCAGTCAAGAGATTAACAA</gDNA_template>
            <first_frame> W  F  M  N  T  C  Q  K  E  A  W  M  P  I  S  L  :  V  Y  T  L  K  R  N  T  S  L  I  G  A  N  V  *  S  S  L  R  E  S  A  E  A  S  Y  T  F  T  G  I  Q  D  *  G  L  S  T  G  I  *  R  Q  A  T  F  C  W  M  N  I  *  T  L  K  F  Q  I  L  V  W  Q  E  L  L  Q  A  T  K  I  K  P  I  Q  L  G  L  L  E  P   : M  V  I  W  H  L  N  M  Q  *  Q  E  D  S  Q  K  N  Q  M  S  T  A  L  A  Y  C  Y  W  K  L  L  A  E  G  G  T  L  A  F  T  K  R  M  V  H  *  A  F  *  H  G :   H  G  S  C  G  M  K  I  R  L  S  N  W  L  T  P  R  *  L  N  Y  S  S  K  R  R  F  I  D  V  Y  M  L  D  Y  Y  V  Y  K  N  M  Q  K  T  G  Q  M  S  P  Q  F  C  L  C  S  P  G  K  L  M  I  Y  Q  V  L  N  N  L  H  L  Q  Q  D  R  P  L  P  R  K  A  P  L  E  F  K  S  P  *  T  M  L  A  L  L  L  W  K  H  D  R  D  H  I  I  L  V  *  A  Y  I  L  F  I  S  C  N  Y  S  C  M  *  F  Y  I  *  N  P  R  E  V  *  T  E  L  S  P  L  A  A  R  I  S  V  K  R  L  T  </first_frame>
            <second_frame>  G  L  *  I  H  A  K  K  K  L  G  C  L  S  L  W :   C  T  H  *  R  G  I  L  P  *  L  E  Q  T  C  D  H  H  *  G  N  R  P  R  P  P  I  P  S  Q  G  F  K  T  K  D  Y  P  Q  G  F  K  G  K  Q  H  F  V  G  *  I  S  E  P  *  N  F  R  F  W  Y  G  K  N  Y  C  R  Q  P  R  S  S  Q  Y  N  *  G  C  W  N  L  :  W  L  Y  G  T  *  I  C  N  D  R  K  I  L  R  K  I  R  C  L  Q  L  W  R  I  V  T  G  N  Y  *  R  K  E  E  H  *  L  L  P  R  G  W  C  I  K  P  S  S  M   : G  M  E  V  V  E  *  K  *  D  C  R  I  G  *  L  Q  D  N  *  T  T  A  Q  K  G  D  S  *  M  C  T  C  W  T  I  M  C  T  R  I  C  R  R  Q  A  K  C  L  H  S  F  V  Y  A  H  P  G  N  *  *  F  T  K  S  *  T  T  C  I  Y  N  K  T  D  P  F  Q  E  R  L  L  *  N  S  S  L  R  E  R  C  *  H  Y  Y  Y  G  S  T  I  E  I  I  *  F  *  C  R  H  I  S  Y  S  F  P  V  I  I  L  V  C  D  S  T  F  R  I  Q  E  K  F  K  P  S  *  V  L  *  Q  R  E  F  Q  S  R  D  *  Q </second_frame>
            <third_frame>   V  Y  E  Y  M  P  K  R  S  L  D  A  Y  L  F   : G  V  H  I  E  E  E  Y  F  L  D  W  S  K  R  V  I  I  I  E  G  I  G  R  G  L  L  Y  L  H  R  D  S  R  L  R  I  I  H  R  D  L  K  A  S  N  I  L  L  D  E  Y  L  N  P  K  I  S  D  F  G  M  A  R  I  I  A  G  N  Q  D  Q  A  N  T  I  R  V  V  G  T  Y :   G  Y  M  A  P  E  Y  A  M  T  G  R  F  S  E  K  S  D  V  Y  S  F  G  V  L  L  L  E  I  I  S  G  R  R  N  T  S  F  Y  Q  E  D  G  A  L  S  L  L  A  W  :  A  W  K  L  W  N  E  N  K  I  V  E  L  V  D  S  K  I  I  E  L  Q  L  K  K  E  I  H  R  C  V  H  V  G  L  L  C  V  Q  E  Y  A  E  D  R  P  N  V  S  T  V  L  S  M  L  T  R  E  I  D  D  L  P  S  P  K  Q  P  A  F  T  T  R  P  T  P  S  K  K  G  S  S  R  I  Q  V  S  V  N  D  V  S  I  T  I  M  E  A  R  *  R  S  Y  N  F  S  V  G  I  Y  L  I  H  F  L  *  L  F  L  Y  V  I  L  H  L  E  S  K  R  S  L  N  R  A  E  S  F  S  S  E  N  F  S  Q  E  I  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0075O22.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91257" stop="91302"/>
                    <exon start="91408" stop="91651"/>
                    <exon start="91737" stop="91887"/>
                    <exon start="91963" stop="92262"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYEYMPKRSLDAYLFGVHIEEEYFLDWSKRVIIIEGIGRGLLYLHRDSRLRIIHRDLKASNILLDEYLNPKISDFGMARIIAGNQDQANTIRVVGTYGYMAPEYAMTGRFSEKSDVYSFGVLLLEIISGRRNTSFYQEDGALSLLAWAWKLWNENKIVELVDSKIIELQLKKEIHRCVHVGLLCVQEYAEDRPNVSTVLSMLTREIDDLPSPKQPAFTTRPTPSKKGSSRIQVSVNDVSITIMEAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 112 chains have been computed
$ 
$ memory statistics:
$ 400200 bytes spliced alignments in total
$ 65 spliced alignments have been stored
$ 6156 bytes was the average size of a spliced alignment
$ 19640 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1636 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 128 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:59:15
-->
