<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 10:57:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0089P21-LMDbm/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0089P21-LMDbm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0089P21-LMDbm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cLER-14-H18" ref_strand="+" ref_description="cLER-14-H18">
      <seq>ctaagatgagctcaacgagaacagaaatctcgtgtggaacagaagggtaaaagctcgtttgattctgatttccagtacgaatacgaaccgtgaaagcgtggcctaacgatcctttagaccttcggaattcgaagctagaggtgtcagaaaagttaccacagggataactggcttgtggcagccaagcgttcatagtgacgttgctttttgatccttcgatgtcggctcttcctatcattgtgaagcagaattcaccaagtgttggattgttcacccaccaatagggaacgtgagctggggttagaccgtcgtgagacaggttagttttaccctactgatgacagtgtcgcaatagtaattcaacctagtacgagaggaaccgttgattcacacaattggccatcgcgcttggttgaaaagccagtggcgcgaagctaccgtgtgctggattatgactgaacgcctctaagtcagaatccgggctagaagcgacgcatgcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0089P21-LMDbm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0089P21.1" temp_strand="+" temp_description="C02SLe0089P21.1  AC215459.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0089P21 sequenced_by:kribb upload_account_name:korea">
        <position start="3181" stop="4283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3481" g_stop="3983" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0089P21.1" gen_strand="+" ref_id="cLER-14-H18" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0089P21.1" gen_strand="+"/>
        <rDNA rDNA_id="cLER-14-H18" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3481" e_stop="3983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAGAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTAACGATCCTTTAGACCTTCGGAATTCGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACAGTGTCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGCCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGCGACGCATGCGCCC</genome_strand>
        <mrna_strand>CTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAGAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTAACGATCCTTTAGACCTTCGGAATTCGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGTGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGGTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACAGTGTCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGCCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGCGACGCATGCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0089P21-LMDbm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="cLER-14-H18" ref_strand="+" ref_description="cLER-14-H18">
      <seq>ctaagatgagctcaacgagaacagaaatctcgtgtggaacagaagggtaaaagctcgtttgattctgatttccagtacgaatacgaaccgtgaaagcgtggcctaacgatcctttagaccttcggaattcgaagctagaggtgtcagaaaagttaccacagggataactggcttgtggcagccaagcgttcatagtgacgttgctttttgatccttcgatgtcggctcttcctatcattgtgaagcagaattcaccaagtgttggattgttcacccaccaatagggaacgtgagctggggttagaccgtcgtgagacaggttagttttaccctactgatgacagtgtcgcaatagtaattcaacctagtacgagaggaaccgttgattcacacaattggccatcgcgcttggttgaaaagccagtggcgcgaagctaccgtgtgctggattatgactgaacgcctctaagtcagaatccgggctagaagcgacgcatgcgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0089P21-LMDbm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0089P21.1" temp_strand="+" temp_description="C02SLe0089P21.1  AC215459.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0089P21 sequenced_by:kribb upload_account_name:korea">
        <position start="12239" stop="13341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12539" g_stop="13041" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0089P21.1" gen_strand="+" ref_id="cLER-14-H18" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0089P21.1" gen_strand="+"/>
        <rDNA rDNA_id="cLER-14-H18" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12539" e_stop="13041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAGAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTAACGATCCTTTAGACCTTCGGAATTCGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACAGTGTCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGCCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGCGACGCATGCGCCC</genome_strand>
        <mrna_strand>CTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAGAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTAACGATCCTTTAGACCTTCGGAATTCGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGTGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGGTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACAGTGTCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGCCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGCGACGCATGCGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3481" PGL_stop="3983"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3481" e_stop="3983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="3481" e_stop="3983" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3481" stop="3983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cLER-14-H18" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAGAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTAACGATCCTTTAGACCTTCGGAATTCGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACAGTGTCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGCCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGCGACGCATGCGCCC</gDNA_template>
            <first_frame> L  R  *  A  Q  R  E  Q  K  S  R  V  E  Q  K  G  K  S  S  F  D  S  D  F  Q  Y  E  Y  E  P  *  K  R  G  L  T  I  L  *  T  F  G  I  R  S  *  R  C  Q  K  S  Y  H  R  D  N  W  L  V  A  A  K  R  S  *  R  R  C  F  L  I  L  R  C  R  L  F  L  S  L  *  S  R  I  H  Q  V  L  D  C  S  P  T  N  R  E  R  E  L  G  L  D  R  R  E  T  G  *  F  Y  P  T  D  D  S  V  A  I  V  I  Q  P  S  T  R  G  T  V  D  S  H  N  W  P  S  R  L  V  E  K  P  V  A  R  S  Y  R  V  L  D  Y  D  *  T  P  L  S  Q  N  P  G  *  K  R  R  M  R   </first_frame>
            <second_frame>  *  D  E  L  N  E  N  R  N  L  V  W  N  R  R  V  K  A  R  L  I  L  I  S  S  T  N  T  N  R  E  S  V  A  *  R  S  F  R  P  S  E  F  E  A  R  G  V  R  K  V  T  T  G  I  T  G  L  W  Q  P  S  V  H  S  D  V  A  F  *  S  F  D  V  G  S  S  Y  H  C  E  A  E  F  T  K  C  W  I  V  H  P  P  I  G  N  V  S  W  V  *  T  V  V  R  Q  V  S  F  T  L  L  M  T  V  S  Q  *  *  F  N  L  V  R  E  E  P  L  I  H  T  I  G  H  R  A  W  L  K  S  Q  W  R  E  A  T  V  C  W  I  M  T  E  R  L  *  V  R  I  R  A  R  S  D  A  C  A  </second_frame>
            <third_frame>   K  M  S  S  T  R  T  E  I  S  C  G  T  E  G  *  K  L  V  *  F  *  F  P  V  R  I  R  T  V  K  A  W  P  N  D  P  L  D  L  R  N  S  K  L  E  V  S  E  K  L  P  Q  G  *  L  A  C  G  S  Q  A  F  I  A  T  L  L  F  D  P  S  M  S  A  L  P  I  I  V  K  Q  N  S  P  S  V  G  L  F  T  H  Q  *  G  T  *  A  G  F  R  P  S  *  D  R  L  V  L  P  Y  *  *  Q  C  R  N  S  N  S  T  *  Y  E  R  N  R  *  F  T  Q  L  A  I  A  L  G  *  K  A  S  G  A  K  L  P  C  A  G  L  *  L  N  A  S  K  S  E  S  G  L  E  A  T  H  A  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0089P21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="12539" PGL_stop="13041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12539" e_stop="13041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="12539" e_stop="13041" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12539" stop="13041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="cLER-14-H18" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAGAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTAACGATCCTTTAGACCTTCGGAATTCGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGACAGTGTCGCAATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGCCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAAGCGACGCATGCGCCC</gDNA_template>
            <first_frame> L  R  *  A  Q  R  E  Q  K  S  R  V  E  Q  K  G  K  S  S  F  D  S  D  F  Q  Y  E  Y  E  P  *  K  R  G  L  T  I  L  *  T  F  G  I  R  S  *  R  C  Q  K  S  Y  H  R  D  N  W  L  V  A  A  K  R  S  *  R  R  C  F  L  I  L  R  C  R  L  F  L  S  L  *  S  R  I  H  Q  V  L  D  C  S  P  T  N  R  E  R  E  L  G  L  D  R  R  E  T  G  *  F  Y  P  T  D  D  S  V  A  I  V  I  Q  P  S  T  R  G  T  V  D  S  H  N  W  P  S  R  L  V  E  K  P  V  A  R  S  Y  R  V  L  D  Y  D  *  T  P  L  S  Q  N  P  G  *  K  R  R  M  R   </first_frame>
            <second_frame>  *  D  E  L  N  E  N  R  N  L  V  W  N  R  R  V  K  A  R  L  I  L  I  S  S  T  N  T  N  R  E  S  V  A  *  R  S  F  R  P  S  E  F  E  A  R  G  V  R  K  V  T  T  G  I  T  G  L  W  Q  P  S  V  H  S  D  V  A  F  *  S  F  D  V  G  S  S  Y  H  C  E  A  E  F  T  K  C  W  I  V  H  P  P  I  G  N  V  S  W  V  *  T  V  V  R  Q  V  S  F  T  L  L  M  T  V  S  Q  *  *  F  N  L  V  R  E  E  P  L  I  H  T  I  G  H  R  A  W  L  K  S  Q  W  R  E  A  T  V  C  W  I  M  T  E  R  L  *  V  R  I  R  A  R  S  D  A  C  A  </second_frame>
            <third_frame>   K  M  S  S  T  R  T  E  I  S  C  G  T  E  G  *  K  L  V  *  F  *  F  P  V  R  I  R  T  V  K  A  W  P  N  D  P  L  D  L  R  N  S  K  L  E  V  S  E  K  L  P  Q  G  *  L  A  C  G  S  Q  A  F  I  A  T  L  L  F  D  P  S  M  S  A  L  P  I  I  V  K  Q  N  S  P  S  V  G  L  F  T  H  Q  *  G  T  *  A  G  F  R  P  S  *  D  R  L  V  L  P  Y  *  *  Q  C  R  N  S  N  S  T  *  Y  E  R  N  R  *  F  T  Q  L  A  I  A  L  G  *  K  A  S  G  A  K  L  P  C  A  G  L  *  L  N  A  S  K  S  E  S  G  L  E  A  T  H  A  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0089P21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 4 chains have been computed
$ 
$ memory statistics:
$ 4080 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 2040 bytes was the average size of a spliced alignment
$ 6704 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3352 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 4 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 10:58:02
-->
