<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:00:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340211" ref_strand="+" ref_description="SGN-E340211 [cTOF-2-B1]">
      <seq>gtattctttagtggaagattacacgaacttgggaccgaagaagaaccagcattacacgcgtcttaggtgttttgacttatggaaactacattcttgggctgcagggctgactgagtttccatttggaagaaatcaagagagcacaagtgaagcaattaatgcatattattcagcagcattgatgggatccgcatatggagatgcagatcttgtttcgcttggctccactctaacagcctttgaaatccagtcagcacagacttggtggcatgtaaaaagagataacaaaatatatgcaccaagatttgtgaagaagaataaggttgttggtatattatggtctagaaaaagagacagcattctctggtttgctccagctgagaggaaagacattaggcttggaattcaagttctaccaatattgccaatcactgaggttgtgttttctgatgttgattatgtgaaggagctcgtaaaatgggcattcactagcgtacccaaaaacagaactgaggaaggatggaaaggatttgtttatgccttggaagcaatttataagcagaagcaagctctaaaagaagtgagggaccttagcagtcatgatgatggaaattcactctcaaatcttttgtggtggattcatagcagaaaatgatcagctttaaacttgagaattcactaattatgcttgttacattgnntattcttgatggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="971" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="671" g_stop="1" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E340211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="671" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCTTTAGTGGAAGATTACACGAACTTGGGACCGAAGAAGAACCAGCATTACACGCGTCTTAGGTGTTTTGACTTATGGAAACTACATTCTTGGGCTGCAGGGCTGACTGAGTTTCCATTTGGAAGAAATCAAGAGAGCACAAGTGAAGCAATTAATGCATATTATTCAGCAGCATTGATGGGATCCGCATATGGAGATGCAGATCTTGTTTCGCTTGGCTCCACTCTAACAGCCTTTGAAATCCAGTCAGCACAGACTTGGTGGCATGTAAAAAGAGATAACAAAATATATGCACCAAGATTTGTGAAGAAGAATAAGGTTGTTGGTATATTATGGTCTAGAAAAAGAGACAGCATTCTCTGGTTTGCTCCAGCTGAGAGGAAAGACATTAGGCTTGGAATTCAAGTTCTACCAATATTGCCAATCACTGAGGTTGTGTTTTCTGATGTTGATTATGTGAAGGAGCTCGTAAAATGGGCATTCACTAGCGTACCCAAAAACAGAACTGAGGAAGGATGGAAAGGATTTGTTTATGCCTTGGAAGCAATTTATAAGCAGAAGCAAGCTCTAAAAGAAGTGAGGGACCTTAGCAGTCATGATGATGGAAATTCACTCTCAAATCTTTTGTGGTGGATTCATAGCAGAAAATGATCAGCTTTAAACTTGA</genome_strand>
        <mrna_strand>GTATTCTTTAGTGGAAGATTACACGAACTTGGGACCGAAGAAGAACCAGCATTACACGCGTCTTAGGTGTTTTGACTTATGGAAACTACATTCTTGGGCTGCAGGGCTGACTGAGTTTCCATTTGGAAGAAATCAAGAGAGCACAAGTGAAGCAATTAATGCATATTATTCAGCAGCATTGATGGGATCCGCATATGGAGATGCAGATCTTGTTTCGCTTGGCTCCACTCTAACAGCCTTTGAAATCCAGTCAGCACAGACTTGGTGGCATGTAAAAAGAGATAACAAAATATATGCACCAAGATTTGTGAAGAAGAATAAGGTTGTTGGTATATTATGGTCTAGAAAAAGAGACAGCATTCTCTGGTTTGCTCCAGCTGAGAGGAAAGACATTAGGCTTGGAATTCAAGTTCTACCAATATTGCCAATCACTGAGGTTGTGTTTTCTGATGTTGATTATGTGAAGGAGCTCGTAAAATGGGCATTCACTAGCGTACCCAAAAACAGAACTGAGGAAGGATGGAAAGGATTTGTTTATGCCTTGGAAGCAATTTATAAGCAGAAGCAAGCTCTAAAAGAAGTGAGGGACCTTAGCAGTCATGATGATGGAAATTCACTCTCAAATCTTTTGTGGTGGATTCATAGCAGAAAATGATCAGCTTTAAACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340373" ref_strand="+" ref_description="SGN-E340373 [cTOF-2-B2]">
      <seq>gtattctttagtggaagattacacgaacttgggaccgaagaagaaccagcattacacgcgtcttaggtgttttgacttatggaaactacattcttgggctgcagggctgactgagtttccatttggaagaaatcaagagagcacaagtgaagcaattaatgcatattattcagcagcattgatgggatccgcatatggagatgcagatcttgtttcgcttggctccactctaacagcctttgaaatccagtcagcacagacttggtggcatgtaaaaagagataacaaaatatatgcaccaagatttgtgaagaagaataaggttgttggtatattatggtctagaaaaagagacagcattctctggtttgctccagctgagaggaaagacattaggcttggaattcaagttctaccaatattgccaatcactgaggttgtgttttctgatgttgattatgtgaaggagctcgtaaaatgggcattcactagcgtacccaaaaacagaactgaggaaggatggaaaggatttgtttatgccttggaagcaatttataagcagaagcaagctctaaaagaagtgagggaccttagcagtcatgatgatggaaattcactctcaaatcttttgtggtggattcatagcagaaaatgatcagctttaaacttgagaattcactaattatgcttgttacattgtttattcttgatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="971" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="671" g_stop="1" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E340373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="671" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTCTTTAGTGGAAGATTACACGAACTTGGGACCGAAGAAGAACCAGCATTACACGCGTCTTAGGTGTTTTGACTTATGGAAACTACATTCTTGGGCTGCAGGGCTGACTGAGTTTCCATTTGGAAGAAATCAAGAGAGCACAAGTGAAGCAATTAATGCATATTATTCAGCAGCATTGATGGGATCCGCATATGGAGATGCAGATCTTGTTTCGCTTGGCTCCACTCTAACAGCCTTTGAAATCCAGTCAGCACAGACTTGGTGGCATGTAAAAAGAGATAACAAAATATATGCACCAAGATTTGTGAAGAAGAATAAGGTTGTTGGTATATTATGGTCTAGAAAAAGAGACAGCATTCTCTGGTTTGCTCCAGCTGAGAGGAAAGACATTAGGCTTGGAATTCAAGTTCTACCAATATTGCCAATCACTGAGGTTGTGTTTTCTGATGTTGATTATGTGAAGGAGCTCGTAAAATGGGCATTCACTAGCGTACCCAAAAACAGAACTGAGGAAGGATGGAAAGGATTTGTTTATGCCTTGGAAGCAATTTATAAGCAGAAGCAAGCTCTAAAAGAAGTGAGGGACCTTAGCAGTCATGATGATGGAAATTCACTCTCAAATCTTTTGTGGTGGATTCATAGCAGAAAATGATCAGCTTTAAACTTGA</genome_strand>
        <mrna_strand>GTATTCTTTAGTGGAAGATTACACGAACTTGGGACCGAAGAAGAACCAGCATTACACGCGTCTTAGGTGTTTTGACTTATGGAAACTACATTCTTGGGCTGCAGGGCTGACTGAGTTTCCATTTGGAAGAAATCAAGAGAGCACAAGTGAAGCAATTAATGCATATTATTCAGCAGCATTGATGGGATCCGCATATGGAGATGCAGATCTTGTTTCGCTTGGCTCCACTCTAACAGCCTTTGAAATCCAGTCAGCACAGACTTGGTGGCATGTAAAAAGAGATAACAAAATATATGCACCAAGATTTGTGAAGAAGAATAAGGTTGTTGGTATATTATGGTCTAGAAAAAGAGACAGCATTCTCTGGTTTGCTCCAGCTGAGAGGAAAGACATTAGGCTTGGAATTCAAGTTCTACCAATATTGCCAATCACTGAGGTTGTGTTTTCTGATGTTGATTATGTGAAGGAGCTCGTAAAATGGGCATTCACTAGCGTACCCAAAAACAGAACTGAGGAAGGATGGAAAGGATTTGTTTATGCCTTGGAAGCAATTTATAAGCAGAAGCAAGCTCTAAAAGAAGTGAGGGACCTTAGCAGTCATGATGATGGAAATTCACTCTCAAATCTTTTGTGGTGGATTCATAGCAGAAAATGATCAGCTTTAAACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265660" ref_strand="+" ref_description="SGN-E265660 [cLEI-14-D24]">
      <seq>caagctctcctgtgatagttcttttactaagtacgctatcagactccggaatcgtcaatcgtggatcctatatgcgtctgcaccgattcatttgactaataatgtatccaccattaagtctggtgggtactcaggtgttattcgtattgctctactggctgaaactgattcccaatttgagaaaatacttgatacgtatagctcggcttatcccgtgtctggaagtgccattttggggtcttttgctctcaagaataagtgggatgtgaagggtgcggggaagatgctaatgcttgctcaccccctccattgacgacttctttcaaaagcacatgcttcagtaactgtgctggaggatgtcaagtatagtagcatggatggtgagcttgcaggtgtaattggagatacatgggatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="1847" stop="830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1547" g_stop="1130" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E265660" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1547" e_stop="1130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTCTCCTGTGATAGTTCTTTTACTAAGTACACTATCAGACTCCGGAATCGTCAATCGTGGATCCTATATGCGTCTGCACCGATTCATTTGACTAATAATGTATCCACCATTAAGTCTGGTGGGTTCTCAGGTGTTATTCGTATTGCTCTACTGGCTGATTCTGATTCCCAATTTGAGAAAATACTTGATACGTATAGCTCGGCTTATCCCGTGTCTGGAAGTGCCATTTTGGGGTCTTTTGCTCTCAAGTATAAGTGGGATGTGAAGGGTGCGGGGAAGTTGCTAATGCTTGCTCACCCCCTCCATTGTCGACTTCTTTCAAAAGCAGATGCTTCAGTAACTGTGCTGGAGGATGTCAAGTATAGTAGCATGGATGGTGAGCTTGTTGGTGTAATTGGAGATACATGGGATCTT</genome_strand>
        <mrna_strand>CAAGCTCTCCTGTGATAGTTCTTTTACTAAGTACGCTATCAGACTCCGGAATCGTCAATCGTGGATCCTATATGCGTCTGCACCGATTCATTTGACTAATAATGTATCCACCATTAAGTCTGGTGGGTACTCAGGTGTTATTCGTATTGCTCTACTGGCTGAAACTGATTCCCAATTTGAGAAAATACTTGATACGTATAGCTCGGCTTATCCCGTGTCTGGAAGTGCCATTTTGGGGTCTTTTGCTCTCAAGAATAAGTGGGATGTGAAGGGTGCGGGGAAGATGCTAATGCTTGCTCACCCCCTCCATTGACGACTTCTTTCAAAAGCACATGCTTCAGTAACTGTGCTGGAGGATGTCAAGTATAGTAGCATGGATGGTGAGCTTGCAGGTGTAATTGGAGATACATGGGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314817" ref_strand="+" ref_description="SGN-E314817 [cTOA-20-P5]">
      <seq>atttgcagaaatcttggacttttcagcaactattcttgacgacttcattgacacgaagatgtcacgttctgaatttctcacttattcaaagtcaactagacaatagagaatctccagattcagattttctatctattcctaatccaccttctctttaaattaaaccaagtagccaatatattaaaaagggtcttctaaaaatctcttctttaatcatcttgaatgggagctggtcctccaaaacctctgtacagtgagtattcaatcctcaacagcatgaaaatggtgccacttttactgttttatgcattttctgtttttgtacagggttataatgctgaattaaccttgcaccaaagcactcagtttctcttccctcaaggaaaatctttagtcttgcctgaaccatcagattacttttctagtcatcttgtatctacccctttgcccactaattcattttttcaaaattttgtactcaagaatggtgatcagcctgagtatatccaaccttatcttattcgctctgctaactcatccatttctatttcttatccatctcagaacattacctctgatttcattgaacagatttttcgacccgattttactatatctgcttcccacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="2647" stop="1420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2347" g_stop="1719" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E314817" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2347" e_stop="1719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAAATCTTGGACTTTTCAGCAACTATTCTTGACGACTTCATTGACACGAAGATGTCACGTTCTGAATTTCTCACTTATTCAAAGTCAACTAGACAATAGAGAATCTCCAGATTCAGATTTTCTATCTATTCCTAATCCACCTTCTCTTTAAATTAAACCAAGTAGCCAATATATTAAAAAGGGTCTTCTAAAAATCTCTTCTTTAATCATCTTGAATGGGAGCTGGTCCTCCAAAACCTCTGTACAGTGAGTATTCAATCCTCAACAGCATGAAAATGGTGCCACTTTTACTGTTTTATGCATTTTCTGTTTTTGTACAGGGTTATAATGCTGAATTAACCTTGCACCAAAGCACTCAGTTTCTCTTCCCTCAAGGAAAATCTTTAGTCTTGCCTGAACCATCAGATTACTTTTCTAGTCATCTTGTATCTACCCCTTTGCCCACTAATTCATTTTTTCAAAATTTTGTACTCAAGAATGGTGATCAGCCTGAGTATATCCAACCTTATCTTATTCGCTCTGCTAACTCATCCATTTCTATTTCTTATCCATCTCAGAACATTACCTCTGATTTCATTGAACAGATTTTTCGACCCGATTTAACTATATCTGCTTCCAACAA</genome_strand>
        <mrna_strand>ATTTGCAGAAATCTTGGACTTTTCAGCAACTATTCTTGACGACTTCATTGACACGAAGATGTCACGTTCTGAATTTCTCACTTATTCAAAGTCAACTAGACAATAGAGAATCTCCAGATTCAGATTTTCTATCTATTCCTAATCCACCTTCTCTTTAAATTAAACCAAGTAGCCAATATATTAAAAAGGGTCTTCTAAAAATCTCTTCTTTAATCATCTTGAATGGGAGCTGGTCCTCCAAAACCTCTGTACAGTGAGTATTCAATCCTCAACAGCATGAAAATGGTGCCACTTTTACTGTTTTATGCATTTTCTGTTTTTGTACAGGGTTATAATGCTGAATTAACCTTGCACCAAAGCACTCAGTTTCTCTTCCCTCAAGGAAAATCTTTAGTCTTGCCTGAACCATCAGATTACTTTTCTAGTCATCTTGTATCTACCCCTTTGCCCACTAATTCATTTTTTCAAAATTTTGTACTCAAGAATGGTGATCAGCCTGAGTATATCCAACCTTATCTTATTCGCTCTGCTAACTCATCCATTTCTATTTCTTATCCATCTCAGAACATTACCTCTGATTTCATTGAACAGATTTTTCGACCCGATTTTACTATATCTGCTTCCCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314686" ref_strand="+" ref_description="SGN-E314686 [cTOA-20-P4]">
      <seq>atttgcagaaatcttggacttttcagcaactattcttgacgacttcattgacacgaagatgtcacgttctgaatttctcacttattcaaagtcaactagacaatagagaatctccagattcagattttctatctattcctaatccaccttctctttaaattaaaccaagtagccaatatattaaaaagggtcttctaaaaatctcttctttaatcatcttgaatgggagctggtcctccaaaacctctgtacagggagtattcaatcctcaacagcatgaaaatggtgccacttttactgttttatgcattttctgtttttgtacagggttataatgctgaattaaccttgcaccagagcactcagtttctcttccctcaaggaaaatctttagtcttgcctgaaccatcagattacttttctagtcatcttgtatctacccctttgcccactaattcattttttcaaaattttgtactcaagaatggtgatcagcctgagtatatccaaccttatcttattcgctctgctaactcatccatttctatttcttatccatctcagaacattacctctgatttcattgaacagattcttcgacccgatttaactatatctgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="2647" stop="1426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2347" g_stop="1725" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E314686" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2347" e_stop="1725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAAATCTTGGACTTTTCAGCAACTATTCTTGACGACTTCATTGACACGAAGATGTCACGTTCTGAATTTCTCACTTATTCAAAGTCAACTAGACAATAGAGAATCTCCAGATTCAGATTTTCTATCTATTCCTAATCCACCTTCTCTTTAAATTAAACCAAGTAGCCAATATATTAAAAAGGGTCTTCTAAAAATCTCTTCTTTAATCATCTTGAATGGGAGCTGGTCCTCCAAAACCTCTGTACAGTGAGTATTCAATCCTCAACAGCATGAAAATGGTGCCACTTTTACTGTTTTATGCATTTTCTGTTTTTGTACAGGGTTATAATGCTGAATTAACCTTGCACCAAAGCACTCAGTTTCTCTTCCCTCAAGGAAAATCTTTAGTCTTGCCTGAACCATCAGATTACTTTTCTAGTCATCTTGTATCTACCCCTTTGCCCACTAATTCATTTTTTCAAAATTTTGTACTCAAGAATGGTGATCAGCCTGAGTATATCCAACCTTATCTTATTCGCTCTGCTAACTCATCCATTTCTATTTCTTATCCATCTCAGAACATTACCTCTGATTTCATTGAACAGATTTTTCGACCCGATTTAACTATATCTGCTTC</genome_strand>
        <mrna_strand>ATTTGCAGAAATCTTGGACTTTTCAGCAACTATTCTTGACGACTTCATTGACACGAAGATGTCACGTTCTGAATTTCTCACTTATTCAAAGTCAACTAGACAATAGAGAATCTCCAGATTCAGATTTTCTATCTATTCCTAATCCACCTTCTCTTTAAATTAAACCAAGTAGCCAATATATTAAAAAGGGTCTTCTAAAAATCTCTTCTTTAATCATCTTGAATGGGAGCTGGTCCTCCAAAACCTCTGTACAGGGAGTATTCAATCCTCAACAGCATGAAAATGGTGCCACTTTTACTGTTTTATGCATTTTCTGTTTTTGTACAGGGTTATAATGCTGAATTAACCTTGCACCAGAGCACTCAGTTTCTCTTCCCTCAAGGAAAATCTTTAGTCTTGCCTGAACCATCAGATTACTTTTCTAGTCATCTTGTATCTACCCCTTTGCCCACTAATTCATTTTTTCAAAATTTTGTACTCAAGAATGGTGATCAGCCTGAGTATATCCAACCTTATCTTATTCGCTCTGCTAACTCATCCATTTCTATTTCTTATCCATCTCAGAACATTACCTCTGATTTCATTGAACAGATTCTTCGACCCGATTTAACTATATCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544191" ref_strand="+" ref_description="SGN-E544191 [TUS-66-G9](-)">
      <seq>ctgatgatgtctgggcaagtcaggttgagaaagctgatattatcataatctctggaggccaatggttctttaggccatttttgtactacgaaaacgatcagctcattggatgtcacaaatgcaatcaaaagaatgtaacagaacatactcattactatggatacaggatggcgtttcgtacagctttcaagacccttttaaacctgcagaaattaaagggtcgattggtaatgttaaggccattctcccctgcacattttgagaatggggattggaataacggagggaattgtaatagaacaagaccattcaagaatgaagaaatgaagttggatggatacgaattgaagatgtatatgactcaattggaagaatttaaggcagcagaaaaagaaggtagaaaaaggggtagtgtcaaattcaaattgctagatacaactgaagcaatggtaatgagaccagatggacatccaaatcattatggacattggccaaatgaaaagaaattgcctgattgtgtacattggtgtatgccaggccctgttgatacttggaatgagcttttattagcaactttaaagatggaaggagatgaattatagaaacagaattatgtctagaatttggtaacaaacatataataactttttcaaatgtttgtgtaatttgttttaggaaaaagggtataagttttttgtaaagaagttttatatcaatatatatttttaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="22258" stop="20921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21958" g_stop="21227" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="763"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E544191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21958" e_stop="21227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCACAAATGCAATCAAAAGAATGTAACAGAACATACTCATTACTATGGATACAGGATGGCGTTTCGTACAGCTTTCAAGACCCTTTTAAACCTGCAGAAATTAAAGGGTCGATTGGTAATGTTAAGGCCATTCTCCCCTGCACATTTTGAGAATGGGGATTGGAATAACGGAGGGAATTGTAATAGAACAAGACCATTCAAGAATGAAGAAATGAAGTTGGATGGATACGAATTGAAGATGTATATGACTCAATTGGAAGAATTTAAGGCAGCAGAAAAAGAAGGTAGAAAAAGGGGTAGTGTCAAATTCAAATTGCTAGATACAACTGAAGCAATGGTAATGAGACCAGATGGACATCCAAATCATTATGGACATTGGCCAAATGAAAAGAAATTGCCTGATTGTGTACATTGGTGTATGCCAGGCCCTGTTGATACTTGGAATGAGCTTTTATTAGCAACTTTAAAGATGGAAGGAGATGAATTATAGAAACAGAATTATGTCTAGAATTTGGTAACAAACATATAATAACTTTTTCAAATGTTTGTGTAATTTGTTTTAGGAAAAAGGGTATAAGTTTTTTGTAAAGAAGTTTTATATCAATATATATTTTTAAGTA</genome_strand>
        <mrna_strand>CTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCACAAATGCAATCAAAAGAATGTAACAGAACATACTCATTACTATGGATACAGGATGGCGTTTCGTACAGCTTTCAAGACCCTTTTAAACCTGCAGAAATTAAAGGGTCGATTGGTAATGTTAAGGCCATTCTCCCCTGCACATTTTGAGAATGGGGATTGGAATAACGGAGGGAATTGTAATAGAACAAGACCATTCAAGAATGAAGAAATGAAGTTGGATGGATACGAATTGAAGATGTATATGACTCAATTGGAAGAATTTAAGGCAGCAGAAAAAGAAGGTAGAAAAAGGGGTAGTGTCAAATTCAAATTGCTAGATACAACTGAAGCAATGGTAATGAGACCAGATGGACATCCAAATCATTATGGACATTGGCCAAATGAAAAGAAATTGCCTGATTGTGTACATTGGTGTATGCCAGGCCCTGTTGATACTTGGAATGAGCTTTTATTAGCAACTTTAAAGATGGAAGGAGATGAATTATAGAAACAGAATTATGTCTAGAATTTGGTAACAAACATATAATAACTTTTTCAAATGTTTGTGTAATTTGTTTTAGGAAAAAGGGTATAAGTTTTTTGTAAAGAAGTTTTATATCAATATATATTTTTAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267490" ref_strand="+" ref_description="SGN-E267490 [cLEI-8-H2]">
      <seq>aaacatgtaatatctttgtgggaaaatggataccatatccaaagggaccatactatacaaatgaaagtaactgtgtgatagatgatcgacagaattgtatgaaatatggaagaccggatagtgatttcatacactggagatggaagccaaatgattgtgagcttccactgtttgatgctactcaatttctgcaaattgttcgtggaaaaactttggcttttgttggagactctctagcaagaaatcaaatgcagtcactggtgtgcattctatctaatgcgtccattcctgtagacgtatcggagactacagacacaaaattcaggcgatggttgtataaagattacaactttacaatcatggccctctggtctccgcagttaatcaaatcctatgactcagatcctactggggatccctattacagtctcatgaatttgtatcttgacaaggctgatgatgtctgggcaagtcaggttgagaaagctgatattatcataatctctggaggccaatggttctttaggccatttttgtactacgaaaacgatcagctcattggatgtcacaaatgcaatcaaaaagatgtaacagaacatactcattactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="22871" stop="21501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22571" g_stop="22294" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22293" i_stop="22134" i_length="160">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22133" g_stop="21801" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="611" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E267490" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22571" e_stop="22294"/>
          <exon e_start="22133" e_stop="21801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAATGTAAGCATTGAGTTTTTGTGCTTCTATGTTTTCTGCTATGCCTAAATTTCAACATTCTATGATATATATTGTTATTACAGCTGTTTGAAACATGCTAAATGTTGTCATAATTCAGATAACAGAATTGGCAAAATCATCAGCTAATATGTTTATATCTCAGGCGTCCATTCCTGTAGACGTATCGGAGACTACAGACACAAAATTCAGGCGATGGTTGTATAAAGATTACAACTTTACAATCATGGCCCTCTGGTCTCCGCAGTTAATCAAATCCTATGACTCAGATCCTACTGGGGATCCCTATTACAGTCTCATGAATTTGTATCTTGACAAGGCTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCACAAATGCAATCAAAAGAATGTAACAGAACATACTCATTACTAT</genome_strand>
        <mrna_strand>AAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAAT................................................................................................................................................................GCGTCCATTCCTGTAGACGTATCGGAGACTACAGACACAAAATTCAGGCGATGGTTGTATAAAGATTACAACTTTACAATCATGGCCCTCTGGTCTCCGCAGTTAATCAAATCCTATGACTCAGATCCTACTGGGGATCCCTATTACAGTCTCATGAATTTGTATCTTGACAAGGCTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCACAAATGCAATCAAAAAGATGTAACAGAACATACTCATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544192" ref_strand="+" ref_description="SGN-E544192 [TUS-66-G9]">
      <seq>ggtggtgtagcagagttgtttgatagctttagaaaagttattctaccaatcgcgacgttactgcttttactcaaaattagctactcttcatttgattctaccactgattctttgctgcaaaatcttgaatcaagtcaaaatggatcactccctcttgatcagccagagcaagtttctccaggaattactagcgctagtcctagcactaactattcggcgaaaacagggataaggcagcaaacatgtaatatctttgtgggaaaatggataccatatccaaagggaccatactatacaaatgaaagtaactgtgtgatagatgatcgacagaattgtatgaaatatggaagaccggatagtgatttcatacactggagatggaagccaaatgattgtgagcttccactgtttgatgctactcaatttctgcaaattgttcgtggaaaaactttggcttttgttggagactctctagcaagaaatcaaatgcagtcactggtgtgcattctatctaatgcgtccattcctgtagacgtatcggagactacagacacaaaattcaggcgatggttgtataaagattacaactttacaatcatggccctctggtctccgcagttaatcaaatcctatgactcagatcctactggggatccctattacagtctcatgaatttgtatcttgacaaggctgatgatgtctgggcaagtcaggttgagaaagctgatattatcataatctctggaggccaatggttctttaggccatttttgtactacgaaaacgatcagctcattggatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="23109" stop="21544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22809" g_stop="22294" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22293" i_stop="22134" i_length="160">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22133" g_stop="21844" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="806" r_length="290" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E544192" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22809" e_stop="22294"/>
          <exon e_start="22133" e_stop="21844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTGTAGCAGAGTTGTTTGATAGCTTTAGAAAAGTTATTCTACCAATCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAATGTAAGCATTGAGTTTTTGTGCTTCTATGTTTTCTGCTATGCCTAAATTTCAACATTCTATGATATATATTGTTATTACAGCTGTTTGAAACATGCTAAATGTTGTCATAATTCAGATAACAGAATTGGCAAAATCATCAGCTAATATGTTTATATCTCAGGCGTCCATTCCTGTAGACGTATCGGAGACTACAGACACAAAATTCAGGCGATGGTTGTATAAAGATTACAACTTTACAATCATGGCCCTCTGGTCTCCGCAGTTAATCAAATCCTATGACTCAGATCCTACTGGGGATCCCTATTACAGTCTCATGAATTTGTATCTTGACAAGGCTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCA</genome_strand>
        <mrna_strand>GGTGGTGTAGCAGAGTTGTTTGATAGCTTTAGAAAAGTTATTCTACCAATCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAAT................................................................................................................................................................GCGTCCATTCCTGTAGACGTATCGGAGACTACAGACACAAAATTCAGGCGATGGTTGTATAAAGATTACAACTTTACAATCATGGCCCTCTGGTCTCCGCAGTTAATCAAATCCTATGACTCAGATCCTACTGGGGATCCCTATTACAGTCTCATGAATTTGTATCTTGACAAGGCTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341232" ref_strand="+" ref_description="SGN-E341232 [cTOE-22-E8]">
      <seq>agagttgtttgatagctttataaaagttattctaccaatcgcgacgttactgcttttactcaaaattagctactcttcatttgattctaccactgattctttgctgcaaaatcttgaatcaagtcaaaatggatcactccctcttgatcagccagagcaagtttctccaggaattactagcgctagtcctagcactaactattcggcgaaaacagggataaggcagcaaacatgtaatatctttgtgggaaaatggataccatatccaaagggaccatactatacaaatgaaagtaactgtgtgatagatgatcgacagaattgtatgaaatatggaagaccggatagtgatttcatacactggagatggaagccaaatgattgtgagcttccactgtttgatgctactcaatttctgcaaattgttcgtggaaaaactttggcttttgttggagactctctagcaagaaatcaaatgcagtcactggtgtgcattctatctaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="23098" stop="21991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22798" g_stop="22294" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E341232" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22798" e_stop="22294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTGTTTGATAGCTTTAGAAAAGTTATTCTACCAATCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAAT</genome_strand>
        <mrna_strand>AGAGTTGTTTGATAGCTTTATAAAAGTTATTCTACCAATCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306789" ref_strand="+" ref_description="SGN-E306789 [cLEY-11-K7]">
      <seq>tcgcgacgttcctgcttttactcaaaattagctactcttcatttgattctaccactgattctttgctgcaaaatcttgaatcaagtcaaaatggatcactccctcttgatcagccagagcaagtttctccaggaattactagcgctagtcctagcactaactattcggcgaaaacagggataaggcagcaaacatgtaatatctttgtgggaaaatggataccatatccaaagggaccatactatacaaatgaaagtaactgtgtgatagatgatcgacagaattgtatgaaatatggaagaccggatagtgatttcatacactggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="23060" stop="22131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22760" g_stop="22431" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E306789" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22760" e_stop="22431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGAT</genome_strand>
        <mrna_strand>TCGCGACGTTCCTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353021" ref_strand="+" ref_description="SGN-E353021 [cTOS-14-M8]">
      <seq>ttgcgccttctcattatgaaggcgggaaatggaatgagggaggtgattgtgcaaggacaaggccgtatggaagtaatgagacttcgttggaggatcaaagcgtggagcaatacaggatccaagtggaagagtttgaggtcgcggagaaagaagggaagatgaaagggaagagattcaggttgatggatacaacgcgagccatgttgatgagaccagatggtcacccaagtaaatatgggcattggccaaatgaaaatgtggcaaatgactgtgtgcattggtgcttgcctggtcctattgattcttggtctgatttcttgtttcatatgttcaagatggaggccatcagatcccttgaggaaaatcttcaatgagagagcaaaattatacaatgtactctgatttcatttatatttaggattcacgtctcagtcatctaaagaggaactcggtttctaagatatatagttatgttgccgtgaagatgcaaccatagccctgttttaaaaaatgttggaaaaagacgtcccttcttgaatttttatagaactgtcgatgttttactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="26905" stop="25738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26605" g_stop="26029" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E353021" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26605" e_stop="26029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCATTGGCCAAATGAAAATGTGGCAAATGACTGTGTGCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGTCTGATTTCTTGTTTCATATGTTCAAGATGGAGGCCATCAGATCCCTTGAGGAAAATCTTCAATGAGAGAGCAAAATTATACAATGTACTCTGATTTCATTTATATTTAGGATTCACGTCTCAGTCATCTAAAGAGGAACTCGGTTTCTAAGATATATAGTTATGTTGCCGTGAAGATGCAACCATAGCCCTGTTTTAAAAAATGTTGGAAAAAGACGTCCCTTCTTGAATTTTTATAGAACTGTCGATGTTTTACTAAACGCATTTAG</genome_strand>
        <mrna_strand>TTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCATTGGCCAAATGAAAATGTGGCAAATGACTGTGTGCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGTCTGATTTCTTGTTTCATATGTTCAAGATGGAGGCCATCAGATCCCTTGAGGAAAATCTTCAATGAGAGAGCAAAATTATACAATGTACTCTGATTTCATTTATATTTAGGATTCACGTCTCAGTCATCTAAAGAGGAACTCGGTTTCTAAGATATATAGTTATGTTGCCGTGAAGATGCAACCATAGCCCTGTTTTAAAAAATGTTGGAAAAAGACGTCCCTTCTTGAATTTTTATAGAACTGTCGATGTTTTACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701390" ref_strand="+" ref_description="SGN-E701390 [FA15DD04]">
      <seq>caacttataacttcactctagcaatgtattggtcaccatttttggtttcaacaaaagaagtagatgcagatggtccatgccatactggactctacaatctatacctagatgaagcagatgagaaatggaccaccaaaattgagggatatgactacattatcttaaacgctgggcactggtttgcgcggtgcagcgtctactatgtaaacaaccaacgagtagggtgcagatactgtggaataccaaatgtaactgaacttccatctacctatgcctaccaacgggcattcgaaactactcttaaagccatcaacaatttagacaattttaagggtgtagctattcttaggacatttgcgccttctcattatgaaggcgggaaatggaatgagggaggtgattgtgcaaggacaaggccgtatggaagtaatgagacttcgttggaggatcaaagcgtggagcaatacaggatccaagtggaagagtttgaggtcgcggagaaagaagggaagatgaaagggaagagattcaggttgatggatacaacgcgagccatgttgatgagaccagatggtcacccaagtaaatatgggcattggccaaatgaaaatgtggcaaatgactgtgtgcattggtgcttgcctggtcctattgattcttggtctgatttcttgtttcatatgttcaagatggaggccatcagatcccttgaggaaaatcttcaatgagagagcaaaattatacaatgtactctgatttcatttatatttaggattcacgtctcagtcatctaaagaggaactcggtttctaagatatatagttatgttgccgtgaagatgcaaccatagccctgttttaaaaatgttggaaaaagacgtcccttcttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="27259" stop="25768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26959" g_stop="26060" g_length="900"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="899" r_length="899" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E701390" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26959" e_stop="26060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTACAACTTCACTCTAGCAATGTATTGGTCACCATTTTTGGTTTCAACAAAAGAAGTAGATGCAGATGGTCCATGCCATACTGGACTCTACAATCTATACCTAGATGAAGCAGATGAGAAATGGACCACCAAAATTGAGGGATATGACTACATTATCTTAAACGCTGGGCACTGGTTTGCGCGGTGCAGCGTCTACTATGTAAACAACCAACGAGTAGGGTGCAGATACTGTGGAATACCAAATGTAACTGAACTTCCATCTACCTATGCCTACCAACGGGCATTCGAAACTACTCTTAAAGCCATCAACAATTTAGACAATTTTAAGGGTGTAGCTATTCTTAGGACATTTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCATTGGCCAAATGAAAATGTGGCAAATGACTGTGTGCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGTCTGATTTCTTGTTTCATATGTTCAAGATGGAGGCCATCAGATCCCTTGAGGAAAATCTTCAATGAGAGAGCAAAATTATACAATGTACTCTGATTTCATTTATATTTAGGATTCACGTCTCAGTCATCTAAAGAGGAACTCGGTTTCTAAGATATATAGTTATGTTGCCGTGAAGATGCAACCATAGCCCTGTTTTAAAAAATGTTGGAAAAAGACGTCCCTTCTTGAATTTTTATA</genome_strand>
        <mrna_strand>CAACTTATAACTTCACTCTAGCAATGTATTGGTCACCATTTTTGGTTTCAACAAAAGAAGTAGATGCAGATGGTCCATGCCATACTGGACTCTACAATCTATACCTAGATGAAGCAGATGAGAAATGGACCACCAAAATTGAGGGATATGACTACATTATCTTAAACGCTGGGCACTGGTTTGCGCGGTGCAGCGTCTACTATGTAAACAACCAACGAGTAGGGTGCAGATACTGTGGAATACCAAATGTAACTGAACTTCCATCTACCTATGCCTACCAACGGGCATTCGAAACTACTCTTAAAGCCATCAACAATTTAGACAATTTTAAGGGTGTAGCTATTCTTAGGACATTTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCATTGGCCAAATGAAAATGTGGCAAATGACTGTGTGCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGTCTGATTTCTTGTTTCATATGTTCAAGATGGAGGCCATCAGATCCCTTGAGGAAAATCTTCAATGAGAGAGCAAAATTATACAATGTACTCTGATTTCATTTATATTTAGGATTCACGTCTCAGTCATCTAAAGAGGAACTCGGTTTCTAAGATATATAGTTATGTTGCCGTGAAGATGCAACCATAGCCCTGTTTT-AAAAATGTTGGAAAAAGACGTCCCTTCTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701800" ref_strand="+" ref_description="SGN-E701800 [FA16DH10]">
      <seq>aagcctaatgagtgtgagctgccaatattcaacccgcttcagtttttggatttggtcagaaacaagtcggtggcaattgtgggtgattcagttggaagaaaccaaatgcagtctctgttatgcctcttgtcccgggttgaatatcctgttgatatttctgacaatccagatcaatctttcaaaaagtacaaatacacaacttacaacttcactctagcaatgtattggtcaccatttttggtttcaacaaaagaagtagatgcagatggtccatgccatactggactctacaatctatacctagatgaagcagatgagaaatggaccaccaaaattgagggatatgactacattatcttaaacgctgggcactggtttgcgcggtgcagcgtctactatgtaaacaaccaacgagtagggtgcagatactgtggaataccaaatgtaactgaacttccatctacctatgcctaccaacgggcattcgaaactactcttaaagccatcaacaatttagacaattttaagggtgtagctattcttaggacatttgcgccttctcattatgaaggcgggaaatggaatgagggaggtgattgtgcaaggacaaggccgtatggaagtaatgagacttcgttggaggatcaaagcgtggagcaatacaggatccaagtggaagagtttgaggtcgcggagaaagaagggaagatgaaagggaagagattcaggttgatggatacaacgcgagccatgttgatgagaccagatggtcacccaagtaaatatgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="28535" stop="26065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28235" g_stop="28101" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28100" i_stop="27021" i_length="1080">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27020" g_stop="26365" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="791" r_length="656" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E701800" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28235" e_stop="28101"/>
          <exon e_start="27020" e_stop="26365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTAATGAGTGTGAGCTGCCAATATTCAACCCGTTTCAGTTTTTGGATTTGGTCAGAAACAAGTCGGTGGCAATTGTGGGTGATTCAGTTGGAAGAAACCAAATGCAGTCTCTGTTATGCCTCTTGTCCCGGGTATCATTCTCTTCCTCTGAATTTTCTGTTGATAGTACTGCTGATTTAAGCTGACTAAAAATATTTATTTCAAATATTAGTTGTTTATTTACAAAATTAATTTATTTTTTAAACAAAAAGTGTGATAGTCATAATTTTTTTTAAAAAAATAATTTGATCCATAAAGTATTGTGCTTTAATAAAGTTTGAAATGCTAAATAATAAATATGATGTAAATAATTTATTCAAACACTTATATCAATAATTATTTTTATGACTCAAACATCTAATCTATATTTATCAATAAATTAAGATAAAAAGAAATATAGGATTAATGAGGAATATGGTCATCAACAGTAAGGTGATGGAAGGGAGCCCTTGGAGGAATCAAAGTCTAGTCACAAACCACTATCAAATTATATTATAGTAACCCTTTAACTACAAATTATTGAAAATAATAATCTTTTGGATTTTACTTCCCTCCTTAATTGTCGGCGAAATATTTAATAAATTAGTCATTGTCATGCTAGAATTGGTTTTCTTCTAGTCCAATTTTTTTTTTTTTAATTTCATTACTCATACCTAAAAAGAAATTAAAATAAAGAAAAGCATTACTGCAAGAAAAGAACAATAGAGACTTGTGACAATAGGAGGAACATTGGGGGCCAGCGTCAAATTTGTCGTATTGCTTTTTAATTCTCAGAAAATCTCTTAGGGTCCCCAAAATTATAAAGAGATTTTCTCCTTAAAATATATAATGCTTAAAAAAAAGAATGTGAAAAATGTCGATACAAAATCAAGATGATTATGCCTGATTTGTTTGACTAATTAAACCATTAATCAACAATTATTGACAGTGGTCCTTGTATTAAACAATTTATTTCCGGGAATTGCTGCCGACGCTTTGGGATTGTTTGGTACCAATATGGGGATAGACAAAGTTAACAGTGCATAAATAATTTTTGAATAAACTAAACTCTCTAATTAAACATAGGATAAATAACTCTATATTTTATTTCAGGATTATTATTAATGGATCTAATTTCTAAATAAAAATCAAAGAAGTGATGCAAACAATTGATCTTCTTTTTGTGTTTATAGGTTGAATATCCTGTTGATATTTCTGACAATCCAGATCAATCTTTCAAAAAGTACAAATACACAACTTACAACTTCACTCTAGCAATGTATTGGTCACCATTTTTGGTTTCAACAAAAGAAGTAGATGCAGATGGTCCATGCCATACTGGACTCTACAATCTATACCTAGATGAAGCAGATGAGAAATGGACCACCAAAATTGAGGGATATGACTACATTATCTTAAACGCTGGGCACTGGTTTGCGCGGTGCAGCGTCTACTATGTAAACAACCAACGAGTAGGGTGCAGATACTGTGGAATACCAAATGTAACTGAACTTCCATCTACCTATGCCTACCAACGGGCATTCGAAACTACTCTTAAAGCCATCAACAATTTAGACAATTTTAAGGGTGTAGCTATTCTTAGGACATTTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCA</genome_strand>
        <mrna_strand>AAGCCTAATGAGTGTGAGCTGCCAATATTCAACCCGCTTCAGTTTTTGGATTTGGTCAGAAACAAGTCGGTGGCAATTGTGGGTGATTCAGTTGGAAGAAACCAAATGCAGTCTCTGTTATGCCTCTTGTCCCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAATATCCTGTTGATATTTCTGACAATCCAGATCAATCTTTCAAAAAGTACAAATACACAACTTACAACTTCACTCTAGCAATGTATTGGTCACCATTTTTGGTTTCAACAAAAGAAGTAGATGCAGATGGTCCATGCCATACTGGACTCTACAATCTATACCTAGATGAAGCAGATGAGAAATGGACCACCAAAATTGAGGGATATGACTACATTATCTTAAACGCTGGGCACTGGTTTGCGCGGTGCAGCGTCTACTATGTAAACAACCAACGAGTAGGGTGCAGATACTGTGGAATACCAAATGTAACTGAACTTCCATCTACCTATGCCTACCAACGGGCATTCGAAACTACTCTTAAAGCCATCAACAATTTAGACAATTTTAAGGGTGTAGCTATTCTTAGGACATTTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301233" ref_strand="-" ref_description="SGN-E301233 [cLEW-24-I3]">
      <seq>aagtaaatatgggcattggccaaatgccaatgttgtattatataatgactgtgttcattggtgcttgcctggtcctattgattcttgggctgatattttgtttcatatgttcaagatggagagcacgaaatccctggaggaaaagcttgaatgagagagccaaatcatacaatgtactctgatttttttagttgcttcatttatttttagaatggttgtgaattacagaggaactctgttacatggatcgttttggttgagttgcaaatgtaactatagtactgttagaaaagttggggcaaaaaaagccttgttgaatttttaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="30581" stop="29654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30281" g_stop="29954" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="345"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E301233" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301233" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="30281" e_stop="29954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAATATGGGCATTGGCCAAATGCCAATGTTGTATTATATAATGACTGTGTTCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGGCTGATATTTTGTTTCATATGTTCAAGATGGAGAGCACGAAATCCCTGGAGGAAAAGCTTGAATGAGAGAGCCAAATCATACAATGTACTCTGATTTTTTTAGTTGCTTCATTTATTTTTAGAATGGTTGTGAATTACAGAGGAACTCTGTTACATGGATCGTTTTGGTTGAGTTGCAAATGTAACTATAGTACTGTTAGAAAAGTTGGGGCAAAAAAAGCCTTGTTGAATTTTTATAGA</genome_strand>
        <mrna_strand>AAGTAAATATGGGCATTGGCCAAATGCCAATGTTGTATTATATAATGACTGTGTTCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGGCTGATATTTTGTTTCATATGTTCAAGATGGAGAGCACGAAATCCCTGGAGGAAAAGCTTGAATGAGAGAGCCAAATCATACAATGTACTCTGATTTTTTTAGTTGCTTCATTTATTTTTAGAATGGTTGTGAATTACAGAGGAACTCTGTTACATGGATCGTTTTGGTTGAGTTGCAAATGTAACTATAGTACTGTTAGAAAAGTTGGGGCAAAAAAAGCCTTGTTGAATTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704304" ref_strand="+" ref_description="SGN-E704304 [FA23DF12]">
      <seq>ctccattgaagaaatttccacaaaaaaaaatggagcttccctttgggaaatactccacttcaacccaaagaaccccaagaatattcttacttttagttttagcagttgtcgttttgggtattatccctctttatcacccatttaattggtacccagcagatttagcaacccaacatccctctgaaatttcacccaattaccatgctgctgaggagcaaaagataaagattaaagagccggagacatgcgatatcttcaccggcgaatgggtctggaatccggatgctccatattacacgaatatgacctgttatgcgatccatgaacaccaaaattgtatcaagtatgggagacccgatacggattatttgaagtggagatggaagcctaatgggtgtgagctacctattttcgacccgtttctgtttttagatttggttaggaacaaatcgttggcactcgtcggtgattcagttggaagaaatcaaatgcagtcgttgatatgcctattggctcgggtggaatatcctgtcgatatatctgataatccagatgaagctttcaaaaaatacaaatacacaacttacaactttacattagcaacatattggtcaccatttttggtgtcaacaaaagaagctgatgcagatggtccaagccatactggagtttacaatcttcaccttgacaaagcagatgagaaatggaccactgaaattgaaagatatgactacgtcatcttaaatgcaggccactggtttgcccggatcagtgtatactttgagaacaaccaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="33104" stop="30345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32804" g_stop="32287" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32286" i_stop="30923" i_length="1364">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30922" g_stop="30645" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="796" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E704304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32804" e_stop="32287"/>
          <exon e_start="30922" e_stop="30645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATTGAAGAAATTTCCACAAAAAAAAATGGAGCTTCCCTTTGGGAAATACTCCACTTCAACCCAAAGAACCCCAAGAATATTCTTACTTTTAGTTTTAGCAGTTGTCGTTTTGGGTATTATCCCTCTTTATCACCCATTTAATTGGTACCCAGCAGATTTAGCAACCCAACATCCCTCTGAAATTTCACCCAATTACCATGCTGCTGAGGAGCAAAAGATAAAGATTAAAGAGCCGGAGACATGCGATATCTTCACCGGCGAATGGGTCTGGAATCCGGATGCTCCATATTACACGAATATGACCTGTTATGCGATCCATGAACACCAAAATTGTATCAAGTATGGGAGACCCGATACGGATTATTTGAAGTGGAGATGGAAGCCTAATGGGTGTGAGCTACCTATTTTCGACCCGTTTCTGTTTTTAGATTTGGTTAGGAACAAATCGTTGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGGGTACCCTTTCTTTTCTCTGCAAATAGTATTAATATAACTTCAATTTGAACAAAGTACTTGCTGATCTATGGTTCTCACTACTTCTACAATATAATGATTTAGTTCATCTTAGTTTTGTTTAGTTCTAGCTTGGATTAACTACATAAATTAGGGTTAATTGAAAATTTGAGCTACCAATGGCTAGATTTTTTCATGATTTAGTTGAAATTTCATGGACGCCATTGATAGGTCAACGAGTACTGTTTTCCGGCATGAGGATGTGAAAGGTAGTAAAATGTGGAGGAATAATGGGAAAGGTTTGATCATGAACAGTAAAATGGAGGACTTGAAATGTAAATCTTTTAGCTCAAGGGCCCTGGATAACCTCGTGAGTATAAAATGTGATAGAGTGGGGAACGACGTCGTTTTATCTAATCTAAACTGTTTAAAGTACTAGATGCCAAATCTAATCATAAACACACATTATTGAGACTTTATATTGTCTTTCCTTCCTTCTATTTTAGGGTAATAATTAAATTTGTTATAATATAGTCATTCTCATTTTTGGAAGTGATTTACTCTAGTTCCTAGAAAGTTGTCATTTCATTACTATTTTCTCCGTTTTAATTTGTTTGTCTAACTTAAGTTGAAACAAACTTTAAAAAGTAAAAAAAACTTTTTGAATGTTGTGGTTTCTAAACTAAAGATATATAAGATGCACTAATATGTCTCTTAATCTTGTGATCTTAAATATGTATATGGAAAGTTGAAATTAAAAAGTTGTCAAAAGAAAAAAAAATATTCTTTTTAAATGGATTAAAATGAAAAGTAAAACAAACAAACTGAAATGGGACTACAGGAGCGTTGATCATCCCTCAAAAGATTAAGTAGTACTACAAGAAAAGAAAAGCAGAGACATACCAAAATATGGGAACATTGGGGGCTGGCGTGAAATTTGTTATATTGCATTTTAATCCTCAGGAAATTTCTTTTGTTACCAATATTATAACAAGACTATTTAGTTAGATCCAAAGAGATTTTCATACTTAACTATTGCTTAGAATAAGTATTTTGCCAGATTAGAGAACCCAAGCCTGGTAACTGGGTTCGTTATCTGTAATAAGTTAATTGTGCCCTTTTGGAGATCTATTTGACTTGATCATTATCAAACATGACCAATGGTTCTTATCAGTCAATTCGTACAGCATTTTATGTTAAGCCCGAGAATCACTTGGGGAAACAACCTGGAATCTGGATTCTTGCTAAACACTGCACTTGCCTCTGCATGTGCCTATATTAGCTTTAAACTAATCCTAAAATAAATTGAAGTGTGAATGATCAAAGAAGTGATAAAAATTTTGATCTTCTTTTCTGTTTCTCTTCAGGTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACATATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAATCTTCACCTTGACAAAGCAGATGAGAAATGGACCACTGAAATTGAAAGATATGACTACGTCATCTTAAATGCAGGCCACTGGTTTGCCCGGATCAGTGTATACTTTGAGAACAACCAACG</genome_strand>
        <mrna_strand>CTCCATTGAAGAAATTTCCACAAAAAAAAATGGAGCTTCCCTTTGGGAAATACTCCACTTCAACCCAAAGAACCCCAAGAATATTCTTACTTTTAGTTTTAGCAGTTGTCGTTTTGGGTATTATCCCTCTTTATCACCCATTTAATTGGTACCCAGCAGATTTAGCAACCCAACATCCCTCTGAAATTTCACCCAATTACCATGCTGCTGAGGAGCAAAAGATAAAGATTAAAGAGCCGGAGACATGCGATATCTTCACCGGCGAATGGGTCTGGAATCCGGATGCTCCATATTACACGAATATGACCTGTTATGCGATCCATGAACACCAAAATTGTATCAAGTATGGGAGACCCGATACGGATTATTTGAAGTGGAGATGGAAGCCTAATGGGTGTGAGCTACCTATTTTCGACCCGTTTCTGTTTTTAGATTTGGTTAGGAACAAATCGTTGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACATATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAATCTTCACCTTGACAAAGCAGATGAGAAATGGACCACTGAAATTGAAAGATATGACTACGTCATCTTAAATGCAGGCCACTGGTTTGCCCGGATCAGTGTATACTTTGAGAACAACCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261753" ref_strand="+" ref_description="SGN-E261753 [cLEG-61-J18]">
      <seq>tggcactcgtcggtgattcagttggaagaaatcaaatgcagtcgttgatatgcctattggctcgggtggaatatcctgtcgatatatctgataatccagatgaagctttcaaaaaatacaaatacacaacttacaactttacattagcaacatattggtcaccatttttggtgtcaacaaaagaagctgatgcagatggtccaagccatactggagtttacaatcttcaccttgacaaagcagatgagaaatggaccactgaaattgaaagatatgactacgtcatcttaaatgcaggccactggtttgcccggatcagtgtatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="32651" stop="30360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32351" g_stop="32287" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32286" i_stop="30923" i_length="1364">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30922" g_stop="30660" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="328" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E261753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32351" e_stop="32287"/>
          <exon e_start="30922" e_stop="30660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGGGTACCCTTTCTTTTCTCTGCAAATAGTATTAATATAACTTCAATTTGAACAAAGTACTTGCTGATCTATGGTTCTCACTACTTCTACAATATAATGATTTAGTTCATCTTAGTTTTGTTTAGTTCTAGCTTGGATTAACTACATAAATTAGGGTTAATTGAAAATTTGAGCTACCAATGGCTAGATTTTTTCATGATTTAGTTGAAATTTCATGGACGCCATTGATAGGTCAACGAGTACTGTTTTCCGGCATGAGGATGTGAAAGGTAGTAAAATGTGGAGGAATAATGGGAAAGGTTTGATCATGAACAGTAAAATGGAGGACTTGAAATGTAAATCTTTTAGCTCAAGGGCCCTGGATAACCTCGTGAGTATAAAATGTGATAGAGTGGGGAACGACGTCGTTTTATCTAATCTAAACTGTTTAAAGTACTAGATGCCAAATCTAATCATAAACACACATTATTGAGACTTTATATTGTCTTTCCTTCCTTCTATTTTAGGGTAATAATTAAATTTGTTATAATATAGTCATTCTCATTTTTGGAAGTGATTTACTCTAGTTCCTAGAAAGTTGTCATTTCATTACTATTTTCTCCGTTTTAATTTGTTTGTCTAACTTAAGTTGAAACAAACTTTAAAAAGTAAAAAAAACTTTTTGAATGTTGTGGTTTCTAAACTAAAGATATATAAGATGCACTAATATGTCTCTTAATCTTGTGATCTTAAATATGTATATGGAAAGTTGAAATTAAAAAGTTGTCAAAAGAAAAAAAAATATTCTTTTTAAATGGATTAAAATGAAAAGTAAAACAAACAAACTGAAATGGGACTACAGGAGCGTTGATCATCCCTCAAAAGATTAAGTAGTACTACAAGAAAAGAAAAGCAGAGACATACCAAAATATGGGAACATTGGGGGCTGGCGTGAAATTTGTTATATTGCATTTTAATCCTCAGGAAATTTCTTTTGTTACCAATATTATAACAAGACTATTTAGTTAGATCCAAAGAGATTTTCATACTTAACTATTGCTTAGAATAAGTATTTTGCCAGATTAGAGAACCCAAGCCTGGTAACTGGGTTCGTTATCTGTAATAAGTTAATTGTGCCCTTTTGGAGATCTATTTGACTTGATCATTATCAAACATGACCAATGGTTCTTATCAGTCAATTCGTACAGCATTTTATGTTAAGCCCGAGAATCACTTGGGGAAACAACCTGGAATCTGGATTCTTGCTAAACACTGCACTTGCCTCTGCATGTGCCTATATTAGCTTTAAACTAATCCTAAAATAAATTGAAGTGTGAATGATCAAAGAAGTGATAAAAATTTTGATCTTCTTTTCTGTTTCTCTTCAGGTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACATATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAATCTTCACCTTGACAAAGCAGATGAGAAATGGACCACTGAAATTGAAAGATATGACTACGTCATCTTAAATGCAGGCCACTGGTTTGCCCGGATCAGTGTATACTT</genome_strand>
        <mrna_strand>TGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACATATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAATCTTCACCTTGACAAAGCAGATGAGAAATGGACCACTGAAATTGAAAGATATGACTACGTCATCTTAAATGCAGGCCACTGGTTTGCCCGGATCAGTGTATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301135" ref_strand="+" ref_description="SGN-E301135 [cLEW-22-C8]">
      <seq>aaagaaccccaagaatattcttacttttaattggagcagttgtggctgagggtattatacctctttatcacccatttaattggtacccagcagatttagcaacccaacatccctctgaaatttcacccaattaccatgctgctgaggagcaaaagataaagattaaagagccggagacatgcgatatcttcaccggcgaatgggtctggaatccggatgctccatattacacgaatatgacctgttatgcgatccatgaacaccaaaattgtatcaagtatgggagacccgatacggattatttgaagtggagatggaagcctaatgggtgtgagctacctattttcgacccgtttctgtttttagatttggttaggaacaaatcgttggcactcgtcggtgattcagttggaagaaatcaaatgcagtcgttgatatgcctattggctcgggtggaatatcctgtcgatatatctgataatccagatgaagctttcaaaaaatacaaatacacaacttacaactttacattagcaacctattggtcaccatttttggtgtcaacaaaagaagctgatgcagatggtccaagccatactggagtttacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="33038" stop="30465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32738" g_stop="32287" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32286" i_stop="30923" i_length="1364">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30922" g_stop="30765" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="610" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E301135" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32738" e_stop="32287"/>
          <exon e_start="30922" e_stop="30765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACCCCAAGAATATTCTTACTTTTAGTTTTAGCAGTTGTCGTTTTGGGTATTATCCCTCTTTATCACCCATTTAATTGGTACCCAGCAGATTTAGCAACCCAACATCCCTCTGAAATTTCACCCAATTACCATGCTGCTGAGGAGCAAAAGATAAAGATTAAAGAGCCGGAGACATGCGATATCTTCACCGGCGAATGGGTCTGGAATCCGGATGCTCCATATTACACGAATATGACCTGTTATGCGATCCATGAACACCAAAATTGTATCAAGTATGGGAGACCCGATACGGATTATTTGAAGTGGAGATGGAAGCCTAATGGGTGTGAGCTACCTATTTTCGACCCGTTTCTGTTTTTAGATTTGGTTAGGAACAAATCGTTGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGGGTACCCTTTCTTTTCTCTGCAAATAGTATTAATATAACTTCAATTTGAACAAAGTACTTGCTGATCTATGGTTCTCACTACTTCTACAATATAATGATTTAGTTCATCTTAGTTTTGTTTAGTTCTAGCTTGGATTAACTACATAAATTAGGGTTAATTGAAAATTTGAGCTACCAATGGCTAGATTTTTTCATGATTTAGTTGAAATTTCATGGACGCCATTGATAGGTCAACGAGTACTGTTTTCCGGCATGAGGATGTGAAAGGTAGTAAAATGTGGAGGAATAATGGGAAAGGTTTGATCATGAACAGTAAAATGGAGGACTTGAAATGTAAATCTTTTAGCTCAAGGGCCCTGGATAACCTCGTGAGTATAAAATGTGATAGAGTGGGGAACGACGTCGTTTTATCTAATCTAAACTGTTTAAAGTACTAGATGCCAAATCTAATCATAAACACACATTATTGAGACTTTATATTGTCTTTCCTTCCTTCTATTTTAGGGTAATAATTAAATTTGTTATAATATAGTCATTCTCATTTTTGGAAGTGATTTACTCTAGTTCCTAGAAAGTTGTCATTTCATTACTATTTTCTCCGTTTTAATTTGTTTGTCTAACTTAAGTTGAAACAAACTTTAAAAAGTAAAAAAAACTTTTTGAATGTTGTGGTTTCTAAACTAAAGATATATAAGATGCACTAATATGTCTCTTAATCTTGTGATCTTAAATATGTATATGGAAAGTTGAAATTAAAAAGTTGTCAAAAGAAAAAAAAATATTCTTTTTAAATGGATTAAAATGAAAAGTAAAACAAACAAACTGAAATGGGACTACAGGAGCGTTGATCATCCCTCAAAAGATTAAGTAGTACTACAAGAAAAGAAAAGCAGAGACATACCAAAATATGGGAACATTGGGGGCTGGCGTGAAATTTGTTATATTGCATTTTAATCCTCAGGAAATTTCTTTTGTTACCAATATTATAACAAGACTATTTAGTTAGATCCAAAGAGATTTTCATACTTAACTATTGCTTAGAATAAGTATTTTGCCAGATTAGAGAACCCAAGCCTGGTAACTGGGTTCGTTATCTGTAATAAGTTAATTGTGCCCTTTTGGAGATCTATTTGACTTGATCATTATCAAACATGACCAATGGTTCTTATCAGTCAATTCGTACAGCATTTTATGTTAAGCCCGAGAATCACTTGGGGAAACAACCTGGAATCTGGATTCTTGCTAAACACTGCACTTGCCTCTGCATGTGCCTATATTAGCTTTAAACTAATCCTAAAATAAATTGAAGTGTGAATGATCAAAGAAGTGATAAAAATTTTGATCTTCTTTTCTGTTTCTCTTCAGGTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACATATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAA</genome_strand>
        <mrna_strand>AAAGAACCCCAAGAATATTCTTACTTTTAATTGGAGCAGTTGTGGCTGAGGGTATTATACCTCTTTATCACCCATTTAATTGGTACCCAGCAGATTTAGCAACCCAACATCCCTCTGAAATTTCACCCAATTACCATGCTGCTGAGGAGCAAAAGATAAAGATTAAAGAGCCGGAGACATGCGATATCTTCACCGGCGAATGGGTCTGGAATCCGGATGCTCCATATTACACGAATATGACCTGTTATGCGATCCATGAACACCAAAATTGTATCAAGTATGGGAGACCCGATACGGATTATTTGAAGTGGAGATGGAAGCCTAATGGGTGTGAGCTACCTATTTTCGACCCGTTTCTGTTTTTAGATTTGGTTAGGAACAAATCGTTGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACCTATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223449" ref_strand="+" ref_description="SGN-E223449 [cLEL-14-I9](-)">
      <seq>tcaagggaagataggtgcaagcacaggtggacgctaaagctacaggttcgttgttgcagctatccggacatcagtattcatccggagtttggtaggtcctcatgctttcgaggatgctaccgttttacattctagcgtagttttagagttgagctagcggagcatgttccactagcgtttctttcctgttttggttcaaactttgtattggcgctattttggccgatatacaagtaatacttaatgaattatttctttcagttgcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="41937" stop="49190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42240" g_stop="42503" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="278" r_length="264" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42504" i_stop="42918" i_length="415">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42919" g_stop="42929" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="289" r_length="11" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E223449" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42240" e_stop="42503"/>
          <exon e_start="42919" e_stop="42929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGGCACAGGTGTACGGTAGAGCTACAAGTTCTTTGTTGCAGCTATCTGGACGTCAGCATTCATCCGGAGTTTGGTAGGTCCTTATGCCTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGTGGGGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAGACTTTGTATTGGTGCTATTTTGGCCGATATACAATTAATATTTAATGAATTATTTCTTTCAGTTGCTTATCTCTTAAAGGTTAGATGGTTGATGATGAACGATTACGAAATGTTAAGAATGTTCAGCAAGTATGATTAAAGAATCAAAAATTCCAAATTTTCCGCTAAAATTAATCTATGTAAAGTAAGAATGACGTAAGTAGGCTTGTCTGCGACCTCTGAGAGGTCAACGACGCCGGTCTCGTCTGGGGTCTAGATTCCGGTCGTGACAAAGTTGGTATCAGAGCGCTAGGTTAAATTCCTAGAATAATGAGTTCACATCAACCACATTGAGTAGTTTCTAAGTCATGGTAGTGAAGTGCACCACTATCCTGGATTAGAGACTGCATGATGCGTAGGAAAAACTTCCCTTTTTCTGATCTTATCGTGCTTATCCTAATGTTTGAATTCTTGGTGTTATGAACGTGTCTAACATCAATCTTGTTGTTTTTCAGAGAATGAATAC</genome_strand>
        <mrna_strand>GTGCAAGCACAGGTGGACGCTAAAGCTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGCGCTATTTTGGCCGATATACAAGTAATACTTAATGAATTATTTCTTTCAGTTGCTTAAAAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545005" ref_strand="+" ref_description="SGN-E545005 [TUS-67-K3](-)">
      <seq>aaattcctttttagtctttgtcacccttgtatgattctgcttattttcttgggtggttttaattaatcaagaagaaaatgatggggtttgagagattgatggtgaatttgaagacgaaactgaggaggtcttttaaaatgaaggaatcatacgacaagattgagaagagtgaaagcatgagagtggagattaggagcaagaaggctcgtaagcttattgaacagactcttaaaattgctgattcccccaaatcccgaagctatcctttctagtaatctgtttagaatgttgtaatgacaaaagtaatcccaacttttatagaaaatcaaattatatgcacaagtttagtggaatctctaaaaaaaaaaaaaaaaaaaactcgaggggggcccgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="52785" stop="61314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53085" g_stop="53135" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53136" i_stop="53222" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53223" g_stop="53529" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="358" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53530" i_stop="54198" i_length="669">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54199" g_stop="54235" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="395" r_length="37" r_score="0.622"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E545005" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53085" e_stop="53135"/>
          <exon e_start="53223" e_stop="53529"/>
          <exon e_start="54199" e_stop="54235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCTTTTTAGTCTTTGTCACCCTTGTATGATTCTGCTTATTTTCTTGGTATACTTCTGTTATTTCTAGTATTGTTATTTTCTTGGTATACTTCTGTTATTTCTAGTATAGGTTACAGTATTATTCTTTTTGCAGGGTGGTTTTAATTAATCAAGAAGAAAATGATGGGGTTTGAGAGATTGATGGTGAATTTGAAGACGAAACTGAGGAGGTCTTTTAAAATGAAGGAATCATACGACAAGATTGAGAAGAGTGAAAGCATGAGAGTGGAGATTAGGAGCAAGAAGGCTCGTAAGCTTATTGAACAGACTCTTAAAATTGCTGATTCCCCCAAATCCCGAAGCTATCCTTTCTAGTAATCTGTTTAGAATGTTGTAATGACAAAAGTAATCCCAACTTTTATAGAAAATCAAATTATATGCACAAGTTTAGTGGAATCTCTATCTTCTTCTCATTCTAATTTTAGCATGCACATGAAGACTCTCTGTTTCCTTTTCCTTTTTAGACATTTAGGATTCGAAATTCACTGATTCAATATGATTCCACGCGCAGTAATTGTATTAAAAAGGGAAAAAGCATTAAGAAGTTCTTCATTTTGAGTTTTGACCATACTTGAAACCTTTGATTACAGATGTTTTGTGTCAGTTTAGAAAATAGTGACAATTCATAGATTAGTTAACTAACATCCATTGCATCTATCTATCTTTCTCTCGATAGACTAAAGCAGAGCACGTTTTAGTTATTTGTTTTTTTCTGCCCTGAATCTTTGCATTTGCAGCCACTATTCGTTTTTCACCTTCTTTTACTTTCTGGAGTATGCTCCGGTAGGTAAGAGTGATTTTTTTTTGGGTAAATTCATGACACTTCATAATATTTTCAATAATGTTTTAACAGATAGAAGTTCTTTAGTTTTCCGTTGAATTTGTTGGAATTTTTTTAGACTAGAATTAGAAAGCTTGTTACTTGAAAATGGTTTTAGAAGATTCATTTAGTCAACAACTAATTTGAGGTAGAACAAATAGACTGATTGGATGTTGATACTTAATAGTTAACTGATATTATATTTATTGAATCTACAAAATTCTCCATTTCAATCTTTTTGTACTAATCAACAAAAAATAAAAAAGTAGTCTCATTCAGGCTCAGTA</genome_strand>
        <mrna_strand>AAATTCCTTTTTAGTCTTTGTCACCCTTGTATGATTCTGCTTATTTTCTTG.......................................................................................GGTGGTTTTAATTAATCAAGAAGAAAATGATGGGGTTTGAGAGATTGATGGTGAATTTGAAGACGAAACTGAGGAGGTCTTTTAAAATGAAGGAATCATACGACAAGATTGAGAAGAGTGAAAGCATGAGAGTGGAGATTAGGAGCAAGAAGGCTCGTAAGCTTATTGAACAGACTCTTAAAATTGCTGATTCCCCCAAATCCCGAAGCTATCCTTTCTAGTAATCTGTTTAGAATGTTGTAATGACAAAAGTAATCCCAACTTTTATAGAAAATCAAATTATATGCACAAGTTTAGTGGAATCTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAACTCGAGGGGGGCCCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545006" ref_strand="+" ref_description="SGN-E545006 [TUS-67-K3]">
      <seq>aaattcctttttagtctttgtcacccttgtatgattctgcttattttcttgggtggttttaattaatcaagaagaaaatgatggggtttgagagattgatggtgaatttgaagacgaaactgaggaggtcttttaaaatgaaggaatcatacgacaagattgagaagagtgaaagcatgagagtggagattaggagcaagaaggctcgtaagcttattgaacagactcttaaaattgctgattcccccaaatcccgaagctatcctttctagtaatctgtttagaatgttgtaatgacaaaagtaatcccaacttttatagaaaatcaaattatatgcacaagtttagtggaatctctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="52785" stop="53830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53085" g_stop="53135" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53136" i_stop="53222" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53223" g_stop="53529" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="358" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="370"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E545006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53085" e_stop="53135"/>
          <exon e_start="53223" e_stop="53529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCCTTTTTAGTCTTTGTCACCCTTGTATGATTCTGCTTATTTTCTTGGTATACTTCTGTTATTTCTAGTATTGTTATTTTCTTGGTATACTTCTGTTATTTCTAGTATAGGTTACAGTATTATTCTTTTTGCAGGGTGGTTTTAATTAATCAAGAAGAAAATGATGGGGTTTGAGAGATTGATGGTGAATTTGAAGACGAAACTGAGGAGGTCTTTTAAAATGAAGGAATCATACGACAAGATTGAGAAGAGTGAAAGCATGAGAGTGGAGATTAGGAGCAAGAAGGCTCGTAAGCTTATTGAACAGACTCTTAAAATTGCTGATTCCCCCAAATCCCGAAGCTATCCTTTCTAGTAATCTGTTTAGAATGTTGTAATGACAAAAGTAATCCCAACTTTTATAGAAAATCAAATTATATGCACAAGTTTAGTGGAATCTCT</genome_strand>
        <mrna_strand>AAATTCCTTTTTAGTCTTTGTCACCCTTGTATGATTCTGCTTATTTTCTTG.......................................................................................GGTGGTTTTAATTAATCAAGAAGAAAATGATGGGGTTTGAGAGATTGATGGTGAATTTGAAGACGAAACTGAGGAGGTCTTTTAAAATGAAGGAATCATACGACAAGATTGAGAAGAGTGAAAGCATGAGAGTGGAGATTAGGAGCAAGAAGGCTCGTAAGCTTATTGAACAGACTCTTAAAATTGCTGATTCCCCCAAATCCCGAAGCTATCCTTTCTAGTAATCTGTTTAGAATGTTGTAATGACAAAAGTAATCCCAACTTTTATAGAAAATCAAATTATATGCACAAGTTTAGTGGAATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308881" ref_strand="+" ref_description="SGN-E308881 [cLEY-23-M4]">
      <seq>aattcctttttagtctttgtcacccttgtatgattctgcttattttcttgggtggttttaattaatcaagaagaaaatgatggggtttgagagattgatggtgaatttgaagacgaaactgaggaggtcttttaaaatgaaggaatcatacgacaagattgagaagagtgaaagcatgagagtggagattaggagcaagaaggctcgtaagcttattgaacagactcttaaaattgctgattcccccaaatcccgaagctatcctttctagtaatctgtttagaatgttgtaatgacaaaagtaatcccaacttttatagaaaatcaaattatatgcacaagtttagtggaatctctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="52786" stop="53830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53086" g_stop="53135" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53136" i_stop="53222" i_length="87">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53223" g_stop="53529" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="357" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="369"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E308881" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53086" e_stop="53135"/>
          <exon e_start="53223" e_stop="53529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCTTTTTAGTCTTTGTCACCCTTGTATGATTCTGCTTATTTTCTTGGTATACTTCTGTTATTTCTAGTATTGTTATTTTCTTGGTATACTTCTGTTATTTCTAGTATAGGTTACAGTATTATTCTTTTTGCAGGGTGGTTTTAATTAATCAAGAAGAAAATGATGGGGTTTGAGAGATTGATGGTGAATTTGAAGACGAAACTGAGGAGGTCTTTTAAAATGAAGGAATCATACGACAAGATTGAGAAGAGTGAAAGCATGAGAGTGGAGATTAGGAGCAAGAAGGCTCGTAAGCTTATTGAACAGACTCTTAAAATTGCTGATTCCCCCAAATCCCGAAGCTATCCTTTCTAGTAATCTGTTTAGAATGTTGTAATGACAAAAGTAATCCCAACTTTTATAGAAAATCAAATTATATGCACAAGTTTAGTGGAATCTCT</genome_strand>
        <mrna_strand>AATTCCTTTTTAGTCTTTGTCACCCTTGTATGATTCTGCTTATTTTCTTG.......................................................................................GGTGGTTTTAATTAATCAAGAAGAAAATGATGGGGTTTGAGAGATTGATGGTGAATTTGAAGACGAAACTGAGGAGGTCTTTTAAAATGAAGGAATCATACGACAAGATTGAGAAGAGTGAAAGCATGAGAGTGGAGATTAGGAGCAAGAAGGCTCGTAAGCTTATTGAACAGACTCTTAAAATTGCTGATTCCCCCAAATCCCGAAGCTATCCTTTCTAGTAATCTGTTTAGAATGTTGTAATGACAAAAGTAATCCCAACTTTTATAGAAAATCAAATTATATGCACAAGTTTAGTGGAATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212096" ref_strand="+" ref_description="SGN-E212096 [cLEC-75-O1]">
      <seq>aaaaattgtgttctcatctctctgtgtgtcgctgtgcaaatgacatagcacataattctgttttccaacacttattgattatcgttttgcttatctttcatttaagagattattaacaaatggcaccgagctccgttgttgttacaatggagaatactaaaaacatttcattagttgaagtcaatgatttggattcaccagcttttagggataaaaacaaggctgcaaatcccaagagatttactaaagtgttgttactgaaagcccagaggacacttggctgtatcccaaaaacatttgcatctgttaagaaacggattgctttatcagatgaagagccaaaatacagggggaagttgtacagatttattagagcttttcttgctatatcagtggtggctttgtgtattgagatttttgcttattttaataagtgggaattgaatctggtgaatccttgggaggtgcaaagtattttgcaatggacttatatggcttggatttcatttagagctgattatattgctccttccctttcaaaacttactacattttgtattgtgcttttccttattcaatccatagatcgacttgttctttgtctgggatgtttctggatgaaattcaggaagattaagccaattatcaatgaagatgcatctgatcttgaggatggatcttatttccctatggttcttgtacagattcccatgtgcaatgaaaaagaggtttttgccccatcaattggtgctgtttgtcagctggattggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="72520" stop="74402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72820" g_stop="73547" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73548" i_stop="74058" i_length="511">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74059" g_stop="74102" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="772" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E212096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72820" e_stop="73547"/>
          <exon e_start="74059" e_stop="74102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTGTGTTCTCATCTCTCTGTGTGTCGCTGTGCAAATGACATAGCACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATTCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAAGATTAAGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAATGAAAAAGAGGTAACACAACTTCAAATATTCCATATCTTATGATTTTGAAAATCTATCTGTTCGGACATGAAATTTGATCTGATTTTCAAGTTCCCAAATACTGGTCCAAACCAATTTTGGGGGTTTTGGAACTTCAACCCCCAAAAATTCAAAATTTTCAATTTCAAATTCCAAAAATGGCAAAAAAAATTTAAAACCCCCCAATTTTTCAAGTTTCAAACTTCAAAGTCTATGATCAAACGGGGGTTAATATTGTGGTCATTCTTGCTGATTGATCAGTTTAAACAGATTTTAATTTGATGGGTTCAATATCTATGTTCACACAGTTGAATCCATTGCAGTTTGCAATTAGGGGTGGTGTTTGTCGAAATCTTTAGTGATTTTTCACATATACATGATTTTGCATCCATTTGAACTACACTGCATCCGTTTAAGCTTGTGTTGTTTTTCAATTCTCTAATGATAGTGTTTGTGAATATGTAGATTTAATCTGATTTCATAATTTTCTTGAACTCAATAGGTTTTTGCCCAATCAATTGGTGCTGTTTGTCAGCTGGATTGGCC</genome_strand>
        <mrna_strand>AAAAATTGTGTTCTCATCTCTCTGTGTGTCGCTGTGCAAATGACATAGCACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATTCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAAGATTAAGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAATGAAAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGCCCCATCAATTGGTGCTGTTTGTCAGCTGGATTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577569" ref_strand="+" ref_description="SGN-E577569 [LE15AB08]">
      <seq>aaattgtgttctcatctctctgtgtgtcgctgtgcaaatgacatagcacataattctgttttccaacacttattgattatcgttttgcttatctttcatttaagagattattaacaaatggcaccgagctccgttgttgttacaatggagaatactaaaaacatttcattagttgaagtcaatgatttggattcaccagcttttagggataaaaacaaggctgcaaatcccaagagatttactaaagtgttgttactgaaagcccagaggacacttggctgtatcccaaaaacatttgcatctgttaagaaacggattgctttatcagatgaagagccaaaatacagggggaagttgtacagatttattagagcttttcttgctatatcagtggtggctttgtgtattgagatttttgcttattttaataagtgggaattgaatctggtgaatccttgggaggtgcaaagtattttgcaatggacttatatggcttggatttcatttagagctgattatattgctccttccctttcaaaacttactacattttgtattgtgcttttccttattcaatccatagatcgacttgttctttgtctgggatgtttctggatgaaattcaggaagattaagccaattatcaatgaagatgcatctgatcttgaggatggatcttatttccctatggttcttgtacagattcccatgtgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="72522" stop="73838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72822" g_stop="73538" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E577569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72822" e_stop="73538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGTGTTCTCATCTCTCTGTGTGTCGCTGTGCAAATGACATAGCACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATTCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAAGATTAAGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAAT</genome_strand>
        <mrna_strand>AAATTGTGTTCTCATCTCTCTGTGTGTCGCTGTGCAAATGACATAGCACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATTCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAAGATTAAGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213812" ref_strand="+" ref_description="SGN-E213812 [cLEC-76-I12]">
      <seq>gtgtcgctgtgcaaatgacatagcacataattctgttttccaacacttattgattatcgttttgcttatctttcatttaagagattattaacaaatggcaccgagctccgttgttgttacaatggagaatactaaaaacatttcattagttgaagtcaatgatttggattcaccagcttttagggataaaaacaaggctgcaaatcccaagagatttactaaagtgttgttactgaaagcccagaggacacttggctgtatcccaaaaacatttgcatctgttaagaaacggattgctttatcagatgaagagccaaaatacagggggaagttgtacagatttattagagcttttcttgctatatcagtggtggctttgtgtattgagatttttgcttattttaataagtgggaattgaatctggtgaatccttgggaggtgcaaagtattttgcaatggacttatatggcttggatttcatttagagctgattatattgctccttccctttcaaaacttactacattttgtattgtgcttttccttattcaatccatagatcgacttgtctttgtctgggatgttctggatgaattcngaaattaaccattatcagccaattatcaatgaagatgcatctgatcttgaggatggatcttatttccctatggttcttgtacagattcccatgtgcaatgaaaaagaggtttttgcccaatcaattggtgctgtttgtcagctgtggtggccaaaagaccgattcttggntacagtattggatgattcagatgatgaagtcctgcagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="72545" stop="74461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72845" g_stop="73547" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73548" i_stop="74058" i_length="511">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74059" g_stop="74161" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="810" r_length="103" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E213812" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72845" e_stop="73547"/>
          <exon e_start="74059" e_stop="74161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCGCTGTGCAAATGACATAGCACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATTCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTTCTGGATGAAAT-T--CAGGAA-GATTA--AGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAATGAAAAAGAGGTAACACAACTTCAAATATTCCATATCTTATGATTTTGAAAATCTATCTGTTCGGACATGAAATTTGATCTGATTTTCAAGTTCCCAAATACTGGTCCAAACCAATTTTGGGGGTTTTGGAACTTCAACCCCCAAAAATTCAAAATTTTCAATTTCAAATTCCAAAAATGGCAAAAAAAATTTAAAACCCCCCAATTTTTCAAGTTTCAAACTTCAAAGTCTATGATCAAACGGGGGTTAATATTGTGGTCATTCTTGCTGATTGATCAGTTTAAACAGATTTTAATTTGATGGGTTCAATATCTATGTTCACACAGTTGAATCCATTGCAGTTTGCAATTAGGGGTGGTGTTTGTCGAAATCTTTAGTGATTTTTCACATATACATGATTTTGCATCCATTTGAACTACACTGCATCCGTTTAAGCTTGTGTTGTTTTTCAATTCTCTAATGATAGTGTTTGTGAATATGTAGATTTAATCTGATTTCATAATTTTCTTGAACTCAATAGGTTTTTGCCCAATCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAA</genome_strand>
        <mrna_strand>GTGTCGCTGTGCAAATGACATAGCACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATTCAATCCATAGATCGACTTG-TCTTTGTCTGGGATG-TTCTGGATGAATTCNGAAATTAACCATTATCAGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAATGAAAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGCCCAATCAATTGGTGCTGTTTGTCAGCTGTGGTGGCCAAAAGACCGATTCTTGGNTACAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394059" ref_strand="+" ref_description="SGN-E394059 [TUS-14-I4]">
      <seq>tgcaaatgacatagcacataattctgttttccaacacttattgattatcgttttgcttatctttcatttaagagattattaacaaatggcaccgagctccgttgttgttacaatggagaatactaaaaacatttcattagttgaagtcaatgatttggattcaccagcttttagggataaaaacaaggctgcaaatcccaagagatttactaaagtgttgttactgaaagcccagaggacacttggctgtatcccaaaaacatttgcatctgttaagaaacggattgctttatcagatgaagagccaaaatacagggggaagttgtacagatttattagagcttttcttgctatatcagtggtggctttgtgtattgagatttttgcttattttaataagtgggaattgaatctggtgaatccttgggaggtgcaaagtattttgcaatggacttatatggcttggatttcatttaaagctgattatattgctccttccctttcaaaacttactacattttgtattgtgcttttccttattcaatccataaatcgacttgttctttgtctgggatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="72554" stop="73732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72854" g_stop="73432" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E394059" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72854" e_stop="73432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAATGACATAGCACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATTCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTT</genome_strand>
        <mrna_strand>TGCAAATGACATAGCACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAAAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATTCAATCCATAAATCGACTTGTTCTTTGTCTGGGATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202574" ref_strand="+" ref_description="SGN-E202574 [cLEC-6-N18]">
      <seq>gcaaatgacatagcacataattctgttttccaacacttattgattatcgttttgcttatctttcatttaagagattattaacaaatggcaccgagctccgttgttgttacaatggagaatactaaaaacatttcattagttgaagtcaatgatttggattcaccagcttttagggataaaaacaaggctgcaaatcccaagagatttactaaagtgttgttactgaaagcccagaggacacttggctgtatcccaaaaacatttgcatctgttaagaaacggattgctttatcagatgaagagccaaaatacagggggaagttgtacagatttattagagcttttcttgctatatcagtggtggctttgtgtattgagatttttgcttattttaataagtgggaattgaatctggtgaatccttgggaggtgcaaagtattttgcaatggacttatatggcttggatttcatttagagctgattatattgctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="72555" stop="73649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72855" g_stop="73349" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E202574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72855" e_stop="73349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGACATAGCACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCT</genome_strand>
        <mrna_strand>GCAAATGACATAGCACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721684" ref_strand="+" ref_description="SGN-E721684 [FC14DE04]">
      <seq>cacataattctgttttccaacacttattgattatcgttttgcttatctttcatttaagagattattaacaaatggcaccgagctccgttgttgttacaatggagaatactaaaaacatttcattagttgaagtcaatgatttggattcaccagcttttagggataaaaacaaggctgcaaatcccaagagatttactaaagtgttgttactgaaagcccagaggacacttggctgtatcccaaaaacatttgcatctgttaagaaacggattgctttatcagatgaagagccaaaatacagggggaagttgtacagatttattaaagcttttcttgctatatcagtggtggctttgtgtattgagatttttgcttattttaataagtgggaattgaatctggtgaatccttgggaggtgcaaagtattttgcaatggacttatatggcttggatttcatttaaagctgattatattgctccttccctttcaaaacttactacattttgtattgtgcttttccttatccaatccatagatcgacttgttctttgtctgggatgtttctggatgaaattcaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="72568" stop="73750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72868" g_stop="73450" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E721684" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72868" e_stop="73450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATTCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAA</genome_strand>
        <mrna_strand>CACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAAAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAAAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATCCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740233" ref_strand="+" ref_description="SGN-E740233 [LC20CD11]">
      <seq>ctttcatttaagagattattaacaaatggcaccgagctccgttgttgttacaatggagaatactaaaaacatttcattagttgaagtcaatgatttggattcaccagcttttagggataaaaacaaggctgcaaatcccaagagatttactaaagtgttgttactgaaagcccagaggacacttggctgtatcccaaaaacatttgcatctgttaagaaacggattgctttatcagatgaagagccaaaatacagggggaagttgtacagatttattagagcttttcttgctatatcagtggtggctttgtgtattgagatttttgcttattttaataagtgggaattgaatctggtgaatccttgggaggtgcaaagtattttgcaatggacttatatggcttggatttcatttagagctgattatattgctccttccctttcaaaacttactacattttgtattgtgcttttccttattcaatccatagatcgacttgttctttgtctgggatgtttctggatgaaattcaggaagattaagccaattatcaatgaagatgcatctgatcttgaggatggatcttatttccctatggttcttgtacagattcccatgtgcaatgaaaaagaggtttttgcccaatcaattggtgctgtttgtcagctggattggccaaaagaccgattcttggtacaagtattggatgattcagatgatgaagtcctgcagcaaatgatcaagaatgaatgtgtatcctggaaagagaaaggagtcaacattatctacagacatcggttcatccgaactggttacaaagctggcaatcttaaatctgcaatgacttgtgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="72614" stop="74578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72914" g_stop="73547" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73548" i_stop="74058" i_length="511">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74059" g_stop="74278" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="854" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E740233" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72914" e_stop="73547"/>
          <exon e_start="74059" e_stop="74278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATTCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAAGATTAAGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAATGAAAAAGAGGTAACACAACTTCAAATATTCCATATCTTATGATTTTGAAAATCTATCTGTTCGGACATGAAATTTGATCTGATTTTCAAGTTCCCAAATACTGGTCCAAACCAATTTTGGGGGTTTTGGAACTTCAACCCCCAAAAATTCAAAATTTTCAATTTCAAATTCCAAAAATGGCAAAAAAAATTTAAAACCCCCCAATTTTTCAAGTTTCAAACTTCAAAGTCTATGATCAAACGGGGGTTAATATTGTGGTCATTCTTGCTGATTGATCAGTTTAAACAGATTTTAATTTGATGGGTTCAATATCTATGTTCACACAGTTGAATCCATTGCAGTTTGCAATTAGGGGTGGTGTTTGTCGAAATCTTTAGTGATTTTTCACATATACATGATTTTGCATCCATTTGAACTACACTGCATCCGTTTAAGCTTGTGTTGTTTTTCAATTCTCTAATGATAGTGTTTGTGAATATGTAGATTTAATCTGATTTCATAATTTTCTTGAACTCAATAGGTTTTTGCCCAATCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACT</genome_strand>
        <mrna_strand>CTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATTCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAAGATTAAGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAATGAAAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGCCCAATCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202332" ref_strand="+" ref_description="SGN-E202332 [cLEC-6-F17]">
      <seq>ccttattcaatccatagatcgacttgttctttgtctgggatgtttctggatgaaattcaggaagattaagccaattatcaatgaagatgcatctgatcttgaggatggatcttatttccctatggttcttgtacagattcccatgtgcaatgaaaaagaggtttttgcccaatcaattggtgctgtttgtcagctggattggccaaaagaccgattcttggtacaagtattggatgattcagatgatgaagtcctgcagcaaatgatcaagaatgaatgtgtatcctggaaagagaaaggagtcaacattatctacagacatcggttcatccgaactggttacaaagctggcaatcttaaatctgcaatgacttgtgactatgttcaggactatgaatttgttgcaatttttgacgcggatttccaaccaaatcctgatttccttaaactgactgttcctcattttaagggaaaaccggatgttggacttgttcaagcacgctggaccttcgttaatcaggatgagaacttacttactaggcttcagaacattaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="73088" stop="74847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73388" g_stop="73547" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73548" i_stop="74058" i_length="511">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74059" g_stop="74367" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="469" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74368" i_stop="74458" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74459" g_stop="74547" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="558" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E202332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73388" e_stop="73547"/>
          <exon e_start="74059" e_stop="74367"/>
          <exon e_start="74459" e_stop="74547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATTCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAAGATTAAGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAATGAAAAAGAGGTAACACAACTTCAAATATTCCATATCTTATGATTTTGAAAATCTATCTGTTCGGACATGAAATTTGATCTGATTTTCAAGTTCCCAAATACTGGTCCAAACCAATTTTGGGGGTTTTGGAACTTCAACCCCCAAAAATTCAAAATTTTCAATTTCAAATTCCAAAAATGGCAAAAAAAATTTAAAACCCCCCAATTTTTCAAGTTTCAAACTTCAAAGTCTATGATCAAACGGGGGTTAATATTGTGGTCATTCTTGCTGATTGATCAGTTTAAACAGATTTTAATTTGATGGGTTCAATATCTATGTTCACACAGTTGAATCCATTGCAGTTTGCAATTAGGGGTGGTGTTTGTCGAAATCTTTAGTGATTTTTCACATATACATGATTTTGCATCCATTTGAACTACACTGCATCCGTTTAAGCTTGTGTTGTTTTTCAATTCTCTAATGATAGTGTTTGTGAATATGTAGATTTAATCTGATTTCATAATTTTCTTGAACTCAATAGGTTTTTGCCCAATCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAGGTAACAAGCTAGTTCAATTGCTCAATCTGAATAGCTAGTTGCTGGTCTTTTTTACGAGGCTAAATAGTTCTTTTTGATTTCTGTTATGTAGGGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTT</genome_strand>
        <mrna_strand>CCTTATTCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAAGATTAAGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAATGAAAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGCCCAATCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAG...........................................................................................GGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212352" ref_strand="+" ref_description="SGN-E212352 [cLEC-74-C24]">
      <seq>ttgttctttgtctgggatgtttctggatgaaattcaggaagattaagccaattatcaatgaagatgcatctgatcttgaggatggatcttatttccctatggttcttgtacagattcccatgtgcaatgaaaaagaggtttttgcccaatcaattggtgctgtttgtcagctggattggccaaaagaccgattcttggtacaagtattggatgattcagatgatgaagtcctgcagcaaatgatcaagaatgaatgtgtatcctggaaagagaaaggagtcaacattatctacagacatcggttcatccgaactggttacaaagctggcaatcttaaatctgcaatgacttgtgactatgttcaggactatgaatttgttgcaatttttgacgcggatttccaaccaaatcctgatttccttaaactgactgttcctcattttaagggaaaaccggatgttggacttgttcaagcacgctggaccttcgttaatcaggatgagaacttacttactaggcttcagaacattaacttgtgcttccattttgaggtggaacaacaagtgaatggtcactatctcaatttctttggattcaatggaacagctggtgtttggagaattaaggctttggaggagtctggcggatggttggaacggacaactgttgaggacatggatatcgctgtcagagcacacttgtatgggctggaaattatctatgntaatgatgtaagggcactttgcgagttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="73111" stop="75065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73411" g_stop="73547" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73548" i_stop="74058" i_length="511">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74059" g_stop="74367" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="446" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74368" i_stop="74458" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74459" g_stop="74765" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="753" r_length="307" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E212352" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73411" e_stop="73547"/>
          <exon e_start="74059" e_stop="74367"/>
          <exon e_start="74459" e_stop="74765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAAGATTAAGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAATGAAAAAGAGGTAACACAACTTCAAATATTCCATATCTTATGATTTTGAAAATCTATCTGTTCGGACATGAAATTTGATCTGATTTTCAAGTTCCCAAATACTGGTCCAAACCAATTTTGGGGGTTTTGGAACTTCAACCCCCAAAAATTCAAAATTTTCAATTTCAAATTCCAAAAATGGCAAAAAAAATTTAAAACCCCCCAATTTTTCAAGTTTCAAACTTCAAAGTCTATGATCAAACGGGGGTTAATATTGTGGTCATTCTTGCTGATTGATCAGTTTAAACAGATTTTAATTTGATGGGTTCAATATCTATGTTCACACAGTTGAATCCATTGCAGTTTGCAATTAGGGGTGGTGTTTGTCGAAATCTTTAGTGATTTTTCACATATACATGATTTTGCATCCATTTGAACTACACTGCATCCGTTTAAGCTTGTGTTGTTTTTCAATTCTCTAATGATAGTGTTTGTGAATATGTAGATTTAATCTGATTTCATAATTTTCTTGAACTCAATAGGTTTTTGCCCAATCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAGGTAACAAGCTAGTTCAATTGCTCAATCTGAATAGCTAGTTGCTGGTCTTTTTTACGAGGCTAAATAGTTCTTTTTGATTTCTGTTATGTAGGGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTAT-GGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTAC</genome_strand>
        <mrna_strand>TTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAAGATTAAGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAATGAAAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGCCCAATCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAG...........................................................................................GGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGGCTGGAAA-TTATCTATGNTAATGATGTAAGGGCACTTTGCGAGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270012" ref_strand="+" ref_description="SGN-E270012 [cLEM-7-J10]">
      <seq>agattcccatgtgcaatgaaaaagaggtttttgcccaatcaattggtgctgttggtcagctggattggccaaaagaccgattcttggtacaagtattggatgattcagatgatgaagtcctgcagcaaatgatcaagaatgaatgtgtatcctggaaagagaaaggagtcaacattatctacagacatcggttcatccgaactggttacaaagctggcaatcttaaatctgcaatgacttgtgactatgttcaggactatgaatttgttgcaatttttgacgcggatttccaaccaaatcctgatttccttaaactgactgttcctcattttaagggaaaaccggatgttggacttgttcaagcacgctggaccttcgttaatcaggatgagaacttacttactaggcttcagaacattaacttgtgcttccattttgaggtggaacaacaagtgaatggtcactatctcaatttctttggattcaatggaacagctggtgtttggagaattaaggctttggaggagtctggcggatggttggaacggacaactgttgaggacatggatatcgctgtcagagcacacttgtatggctggaaatttatctatgttaatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="73222" stop="75045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73522" g_stop="73547" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73548" i_stop="74058" i_length="511">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74059" g_stop="74367" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="335" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74368" i_stop="74458" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74459" g_stop="74745" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="622" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E270012" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73522" e_stop="73547"/>
          <exon e_start="74059" e_stop="74367"/>
          <exon e_start="74459" e_stop="74745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCCCATGTGCAATGAAAAAGAGGTAACACAACTTCAAATATTCCATATCTTATGATTTTGAAAATCTATCTGTTCGGACATGAAATTTGATCTGATTTTCAAGTTCCCAAATACTGGTCCAAACCAATTTTGGGGGTTTTGGAACTTCAACCCCCAAAAATTCAAAATTTTCAATTTCAAATTCCAAAAATGGCAAAAAAAATTTAAAACCCCCCAATTTTTCAAGTTTCAAACTTCAAAGTCTATGATCAAACGGGGGTTAATATTGTGGTCATTCTTGCTGATTGATCAGTTTAAACAGATTTTAATTTGATGGGTTCAATATCTATGTTCACACAGTTGAATCCATTGCAGTTTGCAATTAGGGGTGGTGTTTGTCGAAATCTTTAGTGATTTTTCACATATACATGATTTTGCATCCATTTGAACTACACTGCATCCGTTTAAGCTTGTGTTGTTTTTCAATTCTCTAATGATAGTGTTTGTGAATATGTAGATTTAATCTGATTTCATAATTTTCTTGAACTCAATAGGTTTTTGCCCAATCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAGGTAACAAGCTAGTTCAATTGCTCAATCTGAATAGCTAGTTGCTGGTCTTTTTTACGAGGCTAAATAGTTCTTTTTGATTTCTGTTATGTAGGGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGT</genome_strand>
        <mrna_strand>AGATTCCCATGTGCAATGAAAAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTTGCCCAATCAATTGGTGCTGTTGGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAG...........................................................................................GGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209904" ref_strand="+" ref_description="SGN-E209904 [cLEC-52-J13]">
      <seq>tcaattggtgctgtttgtcagctggattggccaaaagaccgattcttggtacaagtattggatgattcagatgatgaagtcctgcagcaaatgatcaagaatgaatgtgtatcctggaaagagaaaggagtcaacattatctacagacatcggttcatccgaactggttacaaagctggcaatcttaaatctgcaatgacttgtgactatgttcaggactatgaatttgttgcaatttttgacgcggatttccaaccaaatcctgatttccttaaactgactgttcctcattttaagggaaaaccggatgttggacttgttcaagcacgctggaccttcgttaatcaggatgagaacttacttactaggcttcagaacattaacttgtgcttccattttgaggtggaacaacaagtgaatggtcactatctcaatttctttggattcaatggaacagctggtgtttggagaattaaggctttggaggagtctggcggatggttggaacggacaactgttgaggacatggatatcgctgtcagagcacacttgtatggctggaaatttatctatgttaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="73771" stop="75044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74071" g_stop="74367" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74368" i_stop="74458" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74459" g_stop="74744" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="583" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E209904" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74071" e_stop="74367"/>
          <exon e_start="74459" e_stop="74744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAGGTAACAAGCTAGTTCAATTGCTCAATCTGAATAGCTAGTTGCTGGTCTTTTTTACGAGGCTAAATAGTTCTTTTTGATTTCTGTTATGTAGGGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATG</genome_strand>
        <mrna_strand>TCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAG...........................................................................................GGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209905" ref_strand="+" ref_description="SGN-E209905 [cLEC-52-J15]">
      <seq>tcaattggtgctgtttgtcagctggattggccaaaagaccgattcttggtacaagtattggatgattcagatgatgaagtcctgcagcaaatgatcaagaatgaatgtgtatcctggaaagagaaaggagtcaacattatctacagacatcggttcatccgaactggttacaaagctggcaatcttaaatctgcaatgacttgtgactatgttcaggactatgaatttgttgcaatttttgacgcggatttccaaccaaatcctgatttccttaaactgactgttcctcattttaagggaaaaccggatgttggacttgttcaagcacgctggaccttcgttaatcaggatgagaacttacttactaggcttcagaacattaacttgtgcttccattttgaggtggaacaacaagtgaatggtcacctatctcaatttctttggattcaatggaacagctggtgtttggagaattaaggctttggaggagtctggcggatggttggaacggacaactgttgaggacatggatatcgctgtcagagcacacttgtatggctggaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="73771" stop="75027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74071" g_stop="74367" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74368" i_stop="74458" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74459" g_stop="74727" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="567" r_length="270" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E209905" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74071" e_stop="74367"/>
          <exon e_start="74459" e_stop="74727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAGGTAACAAGCTAGTTCAATTGCTCAATCTGAATAGCTAGTTGCTGGTCTTTTTTACGAGGCTAAATAGTTCTTTTTGATTTCTGTTATGTAGGGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCA-CTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATT</genome_strand>
        <mrna_strand>TCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAG...........................................................................................GGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACCTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346061" ref_strand="-" ref_description="SGN-E346061 [cTOF-24-D4]">
      <seq>tttttttttttttttaagtcaaacaatatttnccaattcattattttgcttgatatagtaaaggcaattacaaatttcacaaatgaaaagaaataaaataaaaaagtatatatgaatgaatgtgagtatgctattgtttaaaattcacctgtaactattcttatggtgaaagtcccagtttgcagccaagttttgattgctactcaactggaaattttggtctctaaacagatgatgatgttccaaataaaatattaaaactctttgctttagctagctgacttgttctccaattaaatccaagccaactataagaaaagttaagccttgaaacagcaagtaatagaaatgtatgccttgtgcagataacaggcttcttgcagctgcagtcagcaaaagaaaagcaagcgctaattccttcctgtagattttgttgactcctttctctttccaggatacacattcattcttgatcatttgctgcaggacttcatcatctgaatcatccaatacttgtaccaagaatcggtcttttggccaatccagctgacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="76173" stop="73784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75873" g_stop="75457" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="432" r_length="418" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75456" i_stop="74206" i_length="1251">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74205" g_stop="74084" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="554" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="14" polyA_stop="1"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E346061" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346061" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75873" e_stop="75457"/>
          <exon e_start="74205" e_stop="74084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTCAAACAATATTT-CCAATTCATTATTTTGCTTGATATAGTAAAGGCAATTACAAATTTCACAAATGAAAAGAAATAAAATAAAAAAGTATATATGAATGAATGTGAGTATGCTATTGTTTAAAATTCACCTGTAACTATTCTTATGGTGAAAGTCCCAGTTTGCAGCCAAGTTTTGATTGCTACTCAACTGGAAATTTTGGTCTCTAAACAGATGATGATGTTCCAAATAAAATATTAAAACTCTTTGCTTTAGCTAGCTGACTTGTTCTCCAATTAAATCCAAGCCAACTATAAGAAAAGTTAAGCCTTGAAACAGCAAGTAATAGAAATGTATGCCTTGTGCAGATAACAGGCTTCTTGCAGCTGCAGTCAGCAAAAGAAAAGCAAGCGCTAATTCCTTCCTGTAGATTTTGTTTGCCTTCTTTTTCTTCGGAATCTCTTGTTCATGTTCTTTTAGTTTTCCGTATAGTTCTAGACCAGATTCAGATAACCTTCTTGATATTTTCTCTTCGTTCATTTTCTTTGATTCCTCCTCAGCAAATGCTAGCAAGTCTGATTCAGATGATCTGCCTGTTTTCTTGGTGACCACCCATTCATAGGCACTTCCCAACTGAAATAGCCCCGAGACCATGGCATTGAATTTTGTCACCGACATTGTGTTCTCGAATAGGAGGTATGGCATTAGGAAAGGGAAAGACTTTGGTGCCGGAAGGATGTTCAAAATGGACATGACTATAGGGACATAACAGATAACCCAAGCGGGCAACTGGGCTTCTGGTATGAACATTGTTAATGGAAGTATGATACAGAACAATGTGAATGAGTAAAAGGGTAATACAAGCTTCCTTAGAAGAAAGAAAAGGAATATCATGTTCGCCTTCTTCCAGATAGAGATCTGCAATGACGATTCAAAAAATGATTAAACTTACTACTTGTATGAAAGTTGAATGTTGGGATTTGGAAGGAGGTATTGAGAGAGCGAAGATAATAGTAAGCAACGCTCACCTTGGAAGTCAGGATTGCAGGAAGACATAGTCTAAAGAGCTGCATAGGACCAGAATGCCAACGGTGCTGCTGTTTCTTGTAAGCCTCATATGATTCTGGTAACTCGCAAAGTGCCCTTACATCATTAACATAGATAAATTTCCAGCCATACAAGTGTGCTCTGACAGCGATATCCATGTCCTCAACAGTTGTCCGTTCCAACCATCCGCCAGACTCCTCCAAAGCCTTAATTCTCCAAACACCAGCTGTTCCATTGAATCCAAAGAAATTGAGATAGTGACCATTCACTTGTTGTTCCACCTCAAAATGGAAGCACAAGTTAATGTTCTGAAGCCTAGTAAGTAAGTTCTCATCCTGATTAACGAAGGTCCAGCGTGCTTGAACAAGTCCAACATCCGGTTTTCCCTACATAACAGAAATCAAAAAGAACTATTTAGCCTCGTAAAAAAGACCAGCAACTAGCTATTCAGATTGAGCAATTGAACTAGCTTGTTACCTTAAAATGAGGAACAGTCAGTTTAAGGAAATCAGGATTTGGTTGGAAATCCGCGTCAAAAATTGCAACAAATTCATAGTCCTGAACATAGTCACAAGTCATTGCAGATTTAAGATTGCCAGCTTTGTAACCAGTTCGGATGAACCGATGTCTGTAGATAATGTTGACTCCTTTCTCTTTCCAGGATACACATTCATTCTTGATCATTTGCTGCAGGACTTCATCATCTGAATCATCCAATACTTGTACCAAGAATCGGTCTTTTGGCCAATCCAGCTGACAAA</genome_strand>
        <mrna_strand>TAAGTCAAACAATATTTNCCAATTCATTATTTTGCTTGATATAGTAAAGGCAATTACAAATTTCACAAATGAAAAGAAATAAAATAAAAAAGTATATATGAATGAATGTGAGTATGCTATTGTTTAAAATTCACCTGTAACTATTCTTATGGTGAAAGTCCCAGTTTGCAGCCAAGTTTTGATTGCTACTCAACTGGAAATTTTGGTCTCTAAACAGATGATGATGTTCCAAATAAAATATTAAAACTCTTTGCTTTAGCTAGCTGACTTGTTCTCCAATTAAATCCAAGCCAACTATAAGAAAAGTTAAGCCTTGAAACAGCAAGTAATAGAAATGTATGCCTTGTGCAGATAACAGGCTTCTTGCAGCTGCAGTCAGCAAAAGAAAAGCAAGCGCTAATTCCTTCCTGTAGATTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACTCCTTTCTCTTTCCAGGATACACATTCATTCTTGATCATTTGCTGCAGGACTTCATCATCTGAATCATCCAATACTTGTACCAAGAATCGGTCTTTTGGCCAATCCAGCTGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327684" ref_strand="+" ref_description="SGN-E327684 [cTOC-20-C15]">
      <seq>gatgattcagatgatgaagtcctgcagcaaatgatcaagaatgaatgtgtatcctggaaagagaaaggagtcaacattatctacagacatcggttcatccgaactggttacaaagctggcaatcttaaatctgcaatgacttgtgactatgttcaggactatgaatttgttgcaatttttgacgcggatttccaaccaaatcctgatttccttaaactgactgttcctcattttaagggaaaaccggatgttggacttgttcaagcacgctggaccttcgttaatcaggatgagaacttacttactaggcttcagaacattaacttgtgcttccattttgaggtggaacaacaagtgaatggtcactatctcaatttctttggattcaatggaacagctggtgtttggagaattaaggctttggaggagtctggcggatggttggaacggacaactgttgaggacatggatatcgctgtcagagcacacttgtatggctggaaatttatctatgttaatgatgtaagggcactttgcgagttaccagaatcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttagactatgtcttcctgcaatcctgacttccnagatctctatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="73831" stop="75165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74131" g_stop="74367" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74368" i_stop="74458" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74459" g_stop="74863" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="642" r_length="405" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74974" g_stop="74986" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="655" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E327684" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74131" e_stop="74367"/>
          <exon e_start="74459" e_stop="74863"/>
          <exon e_start="74974" e_stop="74986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAGGTAACAAGCTAGTTCAATTGCTCAATCTGAATAGCTAGTTGCTGGTCTTTTTTACGAGGCTAAATAGTTCTTTTTGATTTCTGTTATGTAGGGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGA</genome_strand>
        <mrna_strand>GATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAG...........................................................................................GGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCNAG..............................................................................................................ATCTCTATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210261" ref_strand="+" ref_description="SGN-E210261 [cLEC-35-E9]">
      <seq>agacatcggttcatccgaactggttacaaagctggcaatcttaaatctgcaatgacttgtgactatgttcaggactatgaatttgttgcaatttttgacgcggatttccaaccaaatcctgatttccttaaactgactgttcctcattttaagggaaaaccggatgttggacttgttcaagcacgctggaccttcgttaatcaggatgagaacttacttactaggcttcagaacattaacttgtgcttccattttgaggtggaacaacaagtgaatggtcactatctcaatttctttggattcaatggaacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="73915" stop="74919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74215" g_stop="74367" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74368" i_stop="74458" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74459" g_stop="74619" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="314" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E210261" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74215" e_stop="74367"/>
          <exon e_start="74459" e_stop="74619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAGGTAACAAGCTAGTTCAATTGCTCAATCTGAATAGCTAGTTGCTGGTCTTTTTTACGAGGCTAAATAGTTCTTTTTGATTTCTGTTATGTAGGGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGC</genome_strand>
        <mrna_strand>AGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAG...........................................................................................GGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210919" ref_strand="+" ref_description="SGN-E210919 [cLEC-69-K2]">
      <seq>tcatccgaactggttacaaagctggcaatcttaaatctgcaatgacttgtgactatgttcaggactatgaatttgttgcaatttttgacgcggatttccaaccaaatcctgatttccttaaactgactgttcctcattttaagggaaaaccggatgttggacttgttcaagcacgctggaccttcgttaatcaggatgagaacttacttactaggcttcagaacattaacttgtgcttccattttgaggtggaacaacaagtgaatggtcactatctcaatttctttggattcaatggaacagctggtgtttggagaattaaggctttggaggagtctggcggatggttggaacggacaactgttgaggacatggatatcgctgtcagagcacacttgtatggctggaaatttatctatgttaatgatgtaagggcactttgcgagttaccagaatcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttagactatgtcttcctgcaatcctgacttccaagatctctatctggaagaaagcgaacatgatattccttttcnnttctctaangaagcttgtattacccttttactcattcacattgntctgtatcatacttccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="73925" stop="75377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74225" g_stop="74367" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74368" i_stop="74458" i_length="91">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74459" g_stop="74863" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="548" r_length="405" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74974" g_stop="75077" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="652" r_length="104" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E210919" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74225" e_stop="74367"/>
          <exon e_start="74459" e_stop="74863"/>
          <exon e_start="74974" e_stop="75077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAGGTAACAAGCTAGTTCAATTGCTCAATCTGAATAGCTAGTTGCTGGTCTTTTTTACGAGGCTAAATAGTTCTTTTTGATTTCTGTTATGTAGGGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATT</genome_strand>
        <mrna_strand>TCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAG...........................................................................................GGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAAGCGAACATGATATTCCTTTTCNNTTCTCTAANGAAGCTTGTATTACCCTTTTACTCATTCACATTGNTCTGTATCATACTTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211151" ref_strand="+" ref_description="SGN-E211151 [cLEC-70-C22]">
      <seq>aatggaacagctggtgtttggagaattaaggctttggaggagtctggcggatggttggaacggacaactgttgaggacatggatatcgctgtcagagcacacttgtatggctggaaatttatctatgttaatgatgtaagggcactttgcgagttaccagaatcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttagactatgtcttcctgcaatcctgacttccaagatctctatctggaagaaggcgaacatgatattccttttctttcttctaaggaagcttgtattacccttttactcattcacattgttctgtatcatacttccattaacaatgttcataccagaagcccagttgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcaccaagaaaacaggcagatcatctgaatcagacttgctagcatttgctgangaggaatcaaagaaaatgaacgaagagaaatatcaagaaggttatctgaatctggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74309" stop="75695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74609" g_stop="74863" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74974" g_stop="75395" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="676" r_length="421" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E211151" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74609" e_stop="74863"/>
          <exon e_start="74974" e_stop="75395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCT</genome_strand>
        <mrna_strand>AATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGANGAGGAATCAAAGAAAATGAACGAAGAG-AAATATCAAGAAGGTTATCTGAATCTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209611" ref_strand="+" ref_description="SGN-E209611 [cLEC-54-G16]">
      <seq>gagaattaaggctttggaggagtctggcggatggttggaacggacaactgttgaggacatggatatcgctgtcagagcacacttgtatggctggaaatttatctatgttaatgatgtaagggcactttgcgagttaccagaatcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttagactatgtcttcctgcaatcctgacttccaagatctctatctggaagaaggcgaacatgatattccttttctttcttctaaggaagcttgtattacccttttactcattcacattgttctgtatcatacttccattaacaatgttcataccagaagcccagttgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttgcctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74329" stop="75577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74629" g_stop="74863" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74974" g_stop="75277" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="539" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E209611" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74629" e_stop="74863"/>
          <exon e_start="74974" e_stop="75277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAAT</genome_strand>
        <mrna_strand>GAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTGCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204656" ref_strand="+" ref_description="SGN-E204656 [cLEC-14-K24]">
      <seq>ttaaggctttggaggagtctggcggatggttggaacggacaactgttgaggacatggatatcgctgtcagagcacacttgtatggctggaaatttatctatgttaatgatgtaagggcactttgcgagttaccagaatcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttagactatgtcttcctgcaatcctgacttccaagatctctatctggaagaaggcgaacatgatattccttttctttcttctaaggaagcttgtattacccttttactcattcacattgttctgtatcatacttccattaacaatgttcataccagaagcccagttgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74334" stop="75454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74634" g_stop="74863" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74974" g_stop="75154" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="411" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E204656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74634" e_stop="74863"/>
          <exon e_start="74974" e_stop="75154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACA</genome_strand>
        <mrna_strand>TTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208981" ref_strand="+" ref_description="SGN-E208981 [cLEC-38-I6]">
      <seq>ggagtctggcggatggttggaacggacaactgttgaggacatggatatcgctgtcagagcacacttgtatggctggaaatttatctatgttaatgatgtaagggcactttgcgagttaccagaatcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttagactatgtcttcctgcaatcctgacttccaagatctctatctggaagaaggcgaacatgatattccttttctttcttctaaggaagcttgtattacccttttactcattcacattgttctgtatcatacttccattaacaatgttcataccagaagcccagttgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtccgtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74347" stop="75589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74647" g_stop="74863" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74974" g_stop="75289" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="533" r_length="316" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E208981" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74647" e_stop="74863"/>
          <exon e_start="74974" e_stop="75289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCA</genome_strand>
        <mrna_strand>GGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCCGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202336" ref_strand="+" ref_description="SGN-E202336 [cLEC-6-H15]">
      <seq>atggttggaacggacaactgttgaggacatggatatcgctgtcagagcacacttgtatggctggaaatttatctatgttaatgatgtaagggcactttgcgagttaccagaatcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttagactatgtcttcctgcaatcctgacttccaagatctctatctggaagaaggcgaacatgatattccttttctttcttctaaggaagcttgtattacccttttactcattcacattgttctgtatcatacttccattaacaatgttcataccagaagcccagttgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74359" stop="75544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74659" g_stop="74863" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74974" g_stop="75244" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="476" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E202336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74659" e_stop="74863"/>
          <exon e_start="74974" e_stop="75244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCT</genome_strand>
        <mrna_strand>ATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550813" ref_strand="+" ref_description="SGN-E550813 [TUS-50-M9]">
      <seq>cacacttgtatggctggaaatttatctatgttaatgatgtaagggcactttgcgagttaccagaatcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttagactatgtcttcctgcaatcctgacttccaagatctctatctggaagaaggcgaacatgatattccttttctttcttctaaggaagcttgtattacccttttactcattcacattgttctgtatcatacttccattaacaatgttcataccagaagcccagttgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcaccaagaaaacaggcagatcatctgaatcagacttgctagcatttgctgaggaggaatcaaagaaaatgaacgaagagaaaatatcaagaaggttatctgaatctggtctagaactatacggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74406" stop="75711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74706" g_stop="74863" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74974" g_stop="75411" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="596" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E550813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74706" e_stop="74863"/>
          <exon e_start="74974" e_stop="75411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAA</genome_strand>
        <mrna_strand>CACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688511" ref_strand="+" ref_description="SGN-E688511 [t3_tus_50_m09]">
      <seq>cacacttgtatggctggaaatttatctatgttaatgatgtaagggcactttgcgagttaccagaatcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttagactatgtcttcctgcaatcctgacttccaagatctctatctggaagaaggcgaacatgatattccttttctttcttctaaggaagcttgtattacccttttactcattcacattgttctgtatcatacttccattaacaatgttcataccagaagcccagttgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcaccaagaaaacaggcagatcatctgaatcagacttgctagcatttgctgaggaggaatcaaagaaaatgaacgaagagaaaatatcaagaaggttatctgaatctggtctagaactatacggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74406" stop="75711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74706" g_stop="74863" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74974" g_stop="75411" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="596" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E688511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74706" e_stop="74863"/>
          <exon e_start="74974" e_stop="75411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAA</genome_strand>
        <mrna_strand>CACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258881" ref_strand="+" ref_description="SGN-E258881 [cLEG-41-E4]">
      <seq>cacacttgtatggctggaaattcatctatgttaatgatgtaggggcactttgcgagttaccagaatcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttacactatgtcttcctgcaatcctgacttccaagatctctatctggaagaaggcgaacatgagattccttttctttcttctaaggaagcttgtattacccttttactcattcacattgttctgtatcatacttccattaacaatgttcataccagaagcccagttgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74406" stop="75540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74706" g_stop="74863" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.953" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74974" g_stop="75240" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="425" r_length="267" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E258881" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74706" e_stop="74863"/>
          <exon e_start="74974" e_stop="75240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATG</genome_strand>
        <mrna_strand>CACACTTGTATGGCTGGAAATTCATCTATGTTAATGATGTAGGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTACACTATGTCTTCCTGCAATCCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAGGCGAACATGAGATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208962" ref_strand="+" ref_description="SGN-E208962 [cLEC-38-C4]">
      <seq>cactttgcgagttaccagaatcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttagactatgtcttcctgcaatcctgacttccaagatctctatctggaagaaggcgaacatgatattccttttctttcttctaaggaagcttgtattacccttttactcattcacattgttctgtatcatacttccattaacaatgttcataccagaagcccagttgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcaccaagaaaacaggcagatcatctgaatcagacttgctagcatttgctgaggaggaatcaaagaaaatgaacgaagagaaaatatcaagaaggttatctgaatctggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74451" stop="75695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74751" g_stop="74863" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74974" g_stop="75395" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="535" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E208962" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74751" e_stop="74863"/>
          <exon e_start="74974" e_stop="75395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCT</genome_strand>
        <mrna_strand>CACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550689" ref_strand="+" ref_description="SGN-E550689 [TUS-50-B21]">
      <seq>atcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttagactatgtcttcctgcaatcctgacttccaagatctctatctggaagaaggcgaacatgatattccttttctttcttctaaggaagcttgtattacccttttactcattcacattgttctgtatcatacttccattaacaatgttcataccagaagcccagttgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcaccaagaaaacaggcagatcatctgaatcagacttgctagcatttgctgaggaggaatcaaagaaaatgaacgaagagaaaatatcaagaaggttatctgaatctggtctagaactatacggaaaactaanagaacatgaacaagagattccgaagaaaaagaaggcaaacaaaatctacaggaaggaattagcgcttgcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74470" stop="75790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74770" g_stop="74863" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74974" g_stop="75490" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="611" r_length="517" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E550689" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74770" e_stop="74863"/>
          <exon e_start="74974" e_stop="75490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTC</genome_strand>
        <mrna_strand>ATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAANAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688355" ref_strand="+" ref_description="SGN-E688355 [t3_tus_50_b21]">
      <seq>atcatatgaggcttacaagaaacagcagcaccgttggcattctggtcctatgcagctctttagactatgtcttcctgcaatcctgacttccaagatctctatctggaagaaggcgaacatgatattccttttctttcttctaaggaagcttgtattacccttttactcattcacattgttctgtatcatacttccattaacaatgttcataccagaagcccagttgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcaccaagaaaacaggcagatcatctgaatcagacttgctagcatttgctgaggaggaatcaaagaaaatgaacgaagagaaaatatcaagaaggttatctgaatctggtctagaactatacggaaaactaaaagaacatgaacaagagattccgaagaaaaagaaggcaaacaaaatctacaggaaggaattagcgcttgcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74470" stop="75790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74770" g_stop="74863" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74974" g_stop="75490" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="611" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E688355" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74770" e_stop="74863"/>
          <exon e_start="74974" e_stop="75490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTC</genome_strand>
        <mrna_strand>ATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200785" ref_strand="+" ref_description="SGN-E200785 [cLEC-9-O10]">
      <seq>tcatatgaggcttacaagaaacagcagcaccgatggcattctggaacctatgcaggtgtttagactatgaatggctgcaatgctgacttccaagatctctatctggaagaaggcgaacatgatattccttttctttcttctaaggaagcttgtattacccttttactcattcacattggtctgtatcatacttccattaacaatgttcataccagaagcccagttgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgttcggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74471" stop="75524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74771" g_stop="74863" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110">
            <donor d_prob="0.990" d_score="0.80"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74974" g_stop="75224" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="346" r_length="252" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E200785" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74771" e_stop="74863"/>
          <exon e_start="74974" e_stop="75224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGG-TCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAGGTGAGCGTTGCTTACTATTATCTTCGCTCTCTCAATACCTCCTTCCAAATCCCAACATTCAACTTTCATACAAGTAGTAAGTTTAATCATTTTTTGAATCGTCATTGCAGATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATG-TCGGTGAC</genome_strand>
        <mrna_strand>TCATATGAGGCTTACAAGAAACAGCAGCACCGATGGCATTCTGGAACCTATGCAGGTGTTTAGACTATGAATGGCTGCAATGCTGACTTCCAAG..............................................................................................................ATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGGTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTTCGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211889" ref_strand="+" ref_description="SGN-E211889 [cLEC-66-E19]">
      <seq>tgcccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcaccaagaaaacaggcagatcatctgaatcagacttgctagcatttgctgaggaggaatcaaagaaaatgaacgaagagaaaatatcaagaaggttatctgaatctggtctagaactatacggaaaactaaaagaacatgaacaagagattccgaagaaaaagaaggcaaacaaaatctacaggaaggaattagcgcttgcttttcttttgctgactgcagctgcaagaagcctgttatctgcacaaggcatacatttctattacttgctgtttcaaggcttaacttttcttatagttggcttggatttaattggagaacaagtcagctagctaaagcaaagagttttaatattttatttggaacatcatcatctgtttagagaacaaaatttccagttgagtagcaatcaaaacttggctgcaaactgggactttcaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74804" stop="76026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75104" g_stop="75726" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E211889" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75104" e_stop="75726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCAT</genome_strand>
        <mrna_strand>TGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGAACAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374685" ref_strand="+" ref_description="SGN-E374685 [TUS-14-B16]">
      <seq>ccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcaccaagaaaacaggcagatcatctgaatcagacttgctagcatttgctgaggaggaatcaaagaaaatgaacgaagagaaaatatcaagaaggttatctgaatctggtctagaactatacggaaaactaaaagaacatgaacaagagattccgaagaaaaagaaggcaaacaaaatctacaggaaggaattagcgcttgcttttcttttgctgactgcagctgcaagaagcctgttatctgcacaaggcatacatttctattacttgctgtttcaaggcttaacttttcttatagttggcttggatttaattggagaacaagtcagctagctaaagcaaagagttttaatattttatttggaacatcatcatctgtttagagaccaaaatttccagttgagtagcaatcaaaacttggctgcaaactgggactttcaccataagaatagttacaggtgaattttaaacaatagcatactcacattcattcatatatacttttttattttatttctttttaattgtgaaatttgttattgcctttactatatcaggccaaataatgaattgggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74807" stop="76161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75107" g_stop="75858" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="753" polyA_stop="782"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E374685" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75107" e_stop="75858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGGAA</genome_strand>
        <mrna_strand>CCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTTAATTGTGAAATTTGTTATTGCCTTTACTATATCAGGCCAAATAATGAATTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374770" ref_strand="+" ref_description="SGN-E374770 [TUS-14-D16]">
      <seq>ccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcaccaagaaaacaggcagatcatctgaatcagacttgctagcatttgctgaggaggaatcaaagaaaatgaacgaagagaaaatatcaagaaggttatctgaatctggtctagaactatacggaaaactaaaagaacatgaacaagagattccgaagaaaaagaaggcaaacaaaatctacaggaaggaattatcgcttgcttttcttttgctgactgcagctgcaagaagcctgttatctgcacaaggcatacatttctattacttgctgtttcaaggcttaacttttcttatagttggcttggatttaattggagaacaagtcagctagctaaagcaaagagttttaatattttatttggaacatcatcatctgtttagagaccaaaatttccagttgagtagcaatcaaaacttggctgcaaactgggactttcaccataagaatagttacaggtgaattttaaacaatagcatactcacattcattcatatatacttttttattttatttctttttatttgtgaaatttgtaattgcctttactatttaaaccaaaatattgaattggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacttggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74807" stop="76161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75107" g_stop="75858" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="753" polyA_stop="782"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E374770" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75107" e_stop="75858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGGAA</genome_strand>
        <mrna_strand>CCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTATCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTTATTTGTGAAATTTGTAATTGCCTTTACTATTTAAACCAAAATATTGAATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202548" ref_strand="+" ref_description="SGN-E202548 [cLEC-6-D16]">
      <seq>ccgcttgggttatctgttatgtccctatagtcatgtccattttgaacatccttccggcaccaaagtctttccctttcctaatgccatacctcctattcgagaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcaccaagaaaacaggcagatcatctgaatcagacttgctagcatttgctgaggaggaatcaaagaaaatgaacgaagagaaaatatcaagaaggttatctgaatctggtctagaactatacggaaaactaaaagaacatgaacaagagattccgaagaaaaagaaggcaaacaaaatctacaggaaggaattagcgcttgcttttcttttgctgactgcagctgcaagaagcctgttatctgcacaaggcatacatttctattacttgctgtttcaaggcttaacttttcttatagttggcttggatttaattggagaacaagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74807" stop="75910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75107" g_stop="75610" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E202548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75107" e_stop="75610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCA</genome_strand>
        <mrna_strand>CCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374684" ref_strand="+" ref_description="SGN-E374684 [TUS-14-B16](-)">
      <seq>acatccttccggcaccaaagtctttccctttcctaatgccataccttctattcgaaaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcaccagaaaaacaggcagatcatctgaatcagacttgctagcatttgctgaggaggaatcaaagaaaatgaacgaaaagaaaatatcaagaaggttatttgaatttggtttagaactatacggaaaactaaaagaacatgaacaagagattccgaagaaaaagaaggcaaacaaaatttacaggaaggaattagcgcttgctttttttttgctgactgcagctgcaaaaagcctgttatttgcacaaggcatacatttttattacttgctgtttcaaggcttaactttttttatagttggcttggatttaattggagaacaagtcagctagctaaagcaaaaagttttaatattttatttggaacatcatcatctgtttagagaccaaaatttccagttgagtagcaatcaaaacttggctgcaaactgggactttccccataagaatagttacaggtgaattttaaacaatagcatactcacattcattcatatatacttttttattttatttcttttcatttgtgaaatttgtaattgccttttctatatccagccaaataatgaattggaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74852" stop="76161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75152" g_stop="75858" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="708" polyA_stop="729"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E374684" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75152" e_stop="75858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGGAA</genome_strand>
        <mrna_strand>ACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTTCTATTCGAAAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAGAAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAAAGAAAATATCAAGAAGGTTATTTGAATTTGGTTTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATTTACAGGAAGGAATTAGCGCTTGCTTTTTTTTTGCTGACTGCAGCTGCAAAAAGCCTGTTATTTGCACAAGGCATACATTTTTATTACTTGCTGTTTCAAGGCTTAACTTTTTTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAAAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCCCCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTTCTATATCCAGCCAAATAATGAATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259227" ref_strand="+" ref_description="SGN-E259227 [cLEG-43-H7]">
      <seq>aaagtctttccctttcctaatgccatacctcctattcgagaacaccaatgtcggtgacaaaattcaatgccatggtctcggggcctatttcagttgggaagtgcctatgaatgggtggtcaccaagaaaacaggcagatcatctgaatcagacttgctagcatttgctgaggaggaatcaaagaaaatgaacgaagagaaaatatcaagaaggttatctgaatctggtctagaactataccggaaaactaaaagaacatgaacaagagattccgaagaaaaagaaggcaaacaaaatctacaggaaggaattagcgcttgcttttcttttgctgactgcagctgcaagaagcctgttatctgcacaaggcatacatttctattacttgctgtttcaaggcttaacttttcttatagttggcttggatttaattggagaacaagtcagctagctaaagcaaatagttttaatattttatttggaacatcatcatctgtttagagaccaaaatttccagttgagtagcaatcaaaacttggctgcaaactgggactttcaccataagaatagttacaggtgaattttaaacaatagcatactcacattcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74868" stop="76074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75168" g_stop="75774" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E259227" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75168" e_stop="75774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACA-CAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGG-CTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATA-CGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATT</genome_strand>
        <mrna_strand>AAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACCAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACCGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAATAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374769" ref_strand="+" ref_description="SGN-E374769 [TUS-14-D16](-)">
      <seq>tccctttcctaatgccatacctcctatttgagaaacacaatgtcggtgacaaaattcaatgccatggtctcggggctatttcagttgggaagtgcctatgaatgggtggtcaccaagaaaacaggcagatcatttgaatcagacttgctagcatttgctgaggaggaatcaaagaaaatgaacgaagagaaaatatcaagaaggttatttgaatttggtttagaactatacggaaaactaaaagaacatgaacaaaagattccgaaaaaaaagaaggcaaacaaaatttacaggaaggaattagcgcttgctttttttttgctgactgcagctgcaaaaagcctgttatttgcacaaggcatacatttttattacttgctgtttcaaggcttaactttttttatagttggcttggatttaattggagaacaagtcagctagctaaaacaaaaagttttaatattttatttggaacatcatcatctgtttaaagaccaaaatttccagttgagtagcaatcaaaacttggctgcaaactgggactttcaccataaaaatagttacaggtgaattttaaacaatagcatactcacattcattcatatatacttttttattttatttcttttcatttgtgaaatttgtaattgccttttctatatcaagccaaattatgaattggaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="74876" stop="76161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75176" g_stop="75858" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="706"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E374769" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75176" e_stop="75858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTTTCCTAATGCCATACCTCCTATTCGAG-AACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGGAA</genome_strand>
        <mrna_strand>TCCCTTTCCTAATGCCATACCTCCTATTTGAGAAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATTTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATTTGAATTTGGTTTAGAACTATACGGAAAACTAAAAGAACATGAACAAAAGATTCCGAAAAAAAAGAAGGCAAACAAAATTTACAGGAAGGAATTAGCGCTTGCTTTTTTTTTGCTGACTGCAGCTGCAAAAAGCCTGTTATTTGCACAAGGCATACATTTTTATTACTTGCTGTTTCAAGGCTTAACTTTTTTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAACAAAAAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAAAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAAAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTTCTATATCAAGCCAAATTATGAATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393913" ref_strand="+" ref_description="SGN-E393913 [TUS-14-I4](-)">
      <seq>agcatttggtgaggaggaatcaaagaaaatgaacgaagagaaaatatcaagaaggttatctgaatttggtctagaactatacggaaaactaaaagaacatgaacaagagattccgaagaaaaagaaggcaaacaaaatttacaggaaggaattagcgcttgcttttcttttgctgactgcagctgcaagaagcctgttatttgcacaaggcatacatttctattacttgctgtttcaaggcttaacttttcttatagttggcttggatttaattggagaacaagtcagctagctaaagcaaagagttttaatattttatttggaacatcatcatctgtttagagaccaaaatttccagttgagtagcaatcaaaacttggctgcaaactgggactttcaccataagaatagttacaggtgaattttaaacaatagcatactcacattcattcatatatacttttttattttatttcttttcatttgtgaaatttgtaattgcctttactatatcaagcaaaataatgaattggaaatattgtttgacttactgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="75024" stop="76180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75324" g_stop="75875" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="554" polyA_stop="565"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E393913" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75324" e_stop="75875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGGAAATATTGTTTGACTTACT</genome_strand>
        <mrna_strand>AGCATTTGGTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATTTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATTTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATTTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGGAAATATTGTTTGACTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243514" ref_strand="+" ref_description="SGN-E243514 [cLED-34-H6]">
      <seq>tatctgaatctggtctagaactatacggaaaactaaaagaacatgaacaagagattccgaagaaaaagaaggcaaacaaaatctacaggaaggaattagcgcttgcttttcttttgctgactgcagctgcaagaagcctgttatctgcacaaggcatacatttctattacttgctgtttcaaggcttaacttttcttatagttggcttggatttaattggagaacaagtcagctagctaaagcaaagagttttaatattttatttggaacatcatcatctgtttagagaccaaaatttccagttgagtagcaatcaaaacttggctgcaaactgggactttcaccataagaatagttacaggtgaattttaaacaatagcatactcacattcattcatatatacttttttattttatttctttgcatttgagaaatttgtaattgcctttactatatcaagcaaaataatgaattggaaatattgtttgacttaaaaaaaaaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="75080" stop="76173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75380" g_stop="75873" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="506"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E243514" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75380" e_stop="75873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGGAAATATTGTTTGACTTA</genome_strand>
        <mrna_strand>TATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTGCATTTGAGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGGAAATATTGTTTGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233615" ref_strand="+" ref_description="SGN-E233615 [cLED-14-I5]">
      <seq>tatctgaatctggtctagaactatacggaaaactaaaagaacatgaacaagagattccgaagaaaaagaaggcaaacaaaatctacaggaaggaattagcgcttgcttttcttttgctgactgcagctgcaagaagcctgttatctgcacaaggcatacatttctattacttgctgtttcaaggcttaacttttcttatagttggcttggatttaattggagaacaagtcagctagctaaagcaaagagttttaatattttatttggaacatcatcatctgtttagagaccaaaatttccagttgagtagcaatcaaaacttggctgcaaactgggactttcaccataagaatagttacaggtgaattttaaacaatagcatactcacattcattcatatatacttttttattttatttcttttcatttgtgaaatttgtaattgcctttactatatcaagcaaaataatgaattggaaatattgtttgacttaaaaaaaaaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="75080" stop="76173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75380" g_stop="75873" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="506"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E233615" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75380" e_stop="75873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGGAAATATTGTTTGACTTA</genome_strand>
        <mrna_strand>TATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGGAAATATTGTTTGACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221277" ref_strand="+" ref_description="SGN-E221277 [cLEL-22-G15](-)">
      <seq>aaaatctacaataaggaattagcgcttgcttttcttttgctgactgcaactgcaaaaagcctgttatctgcacaaggcaaacatttctattacttgctgtttcaaggcttaacttttcttatagttggcttggatttaattggagaacaagtcagctagctaaagcaaagagttttaatattttatttggaacatcatcatctgtttaaagaccaaaatttccagttgagtagcaatcaaaacttggctgcaaactgggactttcaccataagaatagttacaggtgaattttaaacaatagcatactcacattcattcatataaacttttttattttatttcttttcatttgtgaaatttgtaattgcctttactatatcaagcaaaataatgaattgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="75157" stop="76161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75457" g_stop="75858" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="403" polyA_stop="418"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E221277" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75457" e_stop="75858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGGAA</genome_strand>
        <mrna_strand>AAAATCTACAATAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAACTGCAAAAAGCCTGTTATCTGCACAAGGCAAACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAAAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATAAACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="79580" stop="78534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79280" g_stop="78834" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79280" e_stop="78834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTATATAATTCGCAATTGTATAATTCGTTAGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAGACAGAA-TTATACACTTCTATGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACG-CTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAATCCTAGCAATTTCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="79581" stop="78686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79281" g_stop="78960" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79281" e_stop="78960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTATATAATTCGCAATTGTATAATTCGTTAGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAGACAGAA-TTATACACTTCTATGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="79581" stop="78686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79281" g_stop="78991" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79281" e_stop="78991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTATATAATTCGCAATTGTATAATTCGTTAGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAGACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="79581" stop="78831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79281" g_stop="79131" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>151</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79281" e_stop="79131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTATATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746221" ref_strand="+" ref_description="SGN-E746221 [GI|47104833]">
      <seq>gaaaccaaacttgactttgaccaagtgaatctctataaatatcatgcaacttttcaaatgttacacatattttagaatttaggcagaaacaaaaagaattcatattttgttaattttcatttcgatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctgaagatacagctattcaaccagcgattgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcaaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaattggcttcaagtttaggttttcaatctccgattcacgatagcattgaatatacacataattgctacaattcttgtgctgaatttatgtttgatgaaattgctaatggttcaggagctgttgttcttgctactcataatattgagtcaggaaaacttgctgcatccagggcgatagatttagggattagaaaggatagtaaaaagctccaatttgctcagctatatggtatggcagaagggctttcatttgggctgagaaatgcaggatttcaagtgagtaaatatttaccatttggacctgtagagcaagttatgccttaccttattagaagagctgaagaaaatagaggtcttttgtctacatctgccttcgatagacaactcatgaggaaggagttaatcagaagatttgatgtggcaactgcataaatcttgagaactatggtagtgtatattagatataggtgatattactacgaataaatcgaacgtgctttcaagtatttgttgaaagtttttaggtacgaatgctgagagaagttaaagggacaagcaatgaaggtctaattaacgtaaaattgtttggaaatagacttgttgcaacaaaaaaaaatcctatcaatgtactattaattttctttttatctctttcttgtattagtatggaagtttattccaacttttgtaattggtttttttataaatacaaattaaagttgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84505" stop="87763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84804" g_stop="85490" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86710" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="1333" r_length="646" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86711" i_stop="86798" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86799" g_stop="87039" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1334" r_stop="1574" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87040" i_stop="87127" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87128" g_stop="87472" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1575" r_stop="1919" r_length="345" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E746221" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1919</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84804" e_stop="85490"/>
          <exon e_start="86065" e_stop="86710"/>
          <exon e_start="86799" e_stop="87039"/>
          <exon e_start="87128" e_stop="87472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCAAACTTGACTTTGACCAAGTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAGGTAAAATTTCGTGTCACTACACTTTTATTTACTTAATTATATAAGTAGTATTCTCAATATTATATCTTTCGATTTTTTTTATAAATAGGAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGATAGACAACTCATGAGGTAATTAAATATCATTAATAATTTCGTTAACAAAGGAGAAGTTTATACTGAAATGTTTTTATTAATTTTGTAAATTATTTTCTTGCAGGAAGGAGTTAATCAGAAGATTTGATGTGGCAACTGCATAAATCTTGAGAACTATGGTAGTGTATATTAGATATAGGTGATATTACTACGAATAAATCGAACGTGCTTTCAAGTATTTGTTGAAAGTTTTTAGGTACGAATGCTGAGAGAAGTTAAAGGGACAAGCAATGAAGGTCTAATTAACGTAAAATTGTTTGGAAATAGACTTGTTGCAACAAAAAAAAATCCTATCAATGTACTATTAATTTTCTTTTTATCTCTTTCTTGTATTAGTATGGAAGTTTATTCCAACTTTTGTAATTGGTTTTTTTATAAATACAAATTAAAGTTGTCGATATTGATGAAA</genome_strand>
        <mrna_strand>GAAACCAAACTTGACTTTGACCAAGTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCGATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCGATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAG........................................................................................GAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGATAGACAACTCATGAG........................................................................................GAAGGAGTTAATCAGAAGATTTGATGTGGCAACTGCATAAATCTTGAGAACTATGGTAGTGTATATTAGATATAGGTGATATTACTACGAATAAATCGAACGTGCTTTCAAGTATTTGTTGAAAGTTTTTAGGTACGAATGCTGAGAGAAGTTAAAGGGACAAGCAATGAAGGTCTAATTAACGTAAAATTGTTTGGAAATAGACTTGTTGCAACAAAAAAAAATCCTATCAATGTACTATTAATTTTCTTTTTATCTCTTTCTTGTATTAGTATGGAAGTTTATTCCAACTTTTGTAATTGGTTTTTTTATAAATACAAATTAAAGTTGTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272951" ref_strand="+" ref_description="SGN-E272951 [cLEM-25-C21]">
      <seq>gaggttgactttgaccaagtgaatctctataaatatcatgcaaccttttcaaatgttacacatattttagaatttaggcagaaaccaaaaagaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgaccattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaacctatggttctacgaacgtaacaatacccgacgttaccaaccctacggacccaaatattagtcaatcctgagaaaaaagtacctcaattttgatgatgttaaagagttgtttaccgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84514" stop="85549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84810" g_stop="85249" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E272951" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84810" e_stop="85249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGACTTTGACCAAGTGAATCTCTATAAATATCATGCAA-CTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAAC-AAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAA-CTATGGTTCTACGAACGTAACAATA-CCGACGTTA-CAA-CCTACGGA-CCAAATATTAGTCAATCCTGAGAAAAAAGTA-CTCAATTTTGATGATGTTAAAGAGTTGTTTA-CGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCAT</genome_strand>
        <mrna_strand>GAGGTTGACTTTGACCAAGTGAATCTCTATAAATATCATGCAACCTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACCAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACCATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACCTATGGTTCTACGAACGTAACAATACCCGACGTTACCAACCCTACGGACCCAAATATTAGTCAATCCTGAGAAAAAAGTACCTCAATTTTGATGATGTTAAAGAGTTGTTTACCGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235810" ref_strand="+" ref_description="SGN-E235810 [cLED-15-D13]">
      <seq>tttgaccaagtgaatctctataaatatcatgcaacttttcaaatgttacacatattttagaatttaggcagaaacaaaaagaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaagaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84519" stop="85708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84819" g_stop="85408" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E235810" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84819" e_stop="85408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCAAGTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGC</genome_strand>
        <mrna_strand>TTTGACCAAGTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAAGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242387" ref_strand="+" ref_description="SGN-E242387 [cLED-30-C23]">
      <seq>tttgaccaagtgaatctctataaatatcatgcaacttttcaaatgttacacatattttagaatttaggcagaaacaaaaagaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaagcatgcttgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84519" stop="85693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84819" g_stop="85393" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E242387" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84819" e_stop="85393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCAAGTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTA</genome_strand>
        <mrna_strand>TTTGACCAAGTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAAGCATGCTTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242550" ref_strand="+" ref_description="SGN-E242550 [cLED-30-F9]">
      <seq>tttgaccaagtgaatctctataaatatcatgcaacttttcaaatgttacacatattttagaatttaggcagaaacaaaaagaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84519" stop="85623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84819" g_stop="85323" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E242550" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84819" e_stop="85323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCAAGTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAA</genome_strand>
        <mrna_strand>TTTGACCAAGTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240653" ref_strand="+" ref_description="SGN-E240653 [cLED-21-A21]">
      <seq>tttgaccaagtgaatctctataaatatcatgcaacttttcaaatgttacacatattttagaatttaggcagaaacaaaaagaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84519" stop="85582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84819" g_stop="85282" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E240653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84819" e_stop="85282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCAAGTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGG</genome_strand>
        <mrna_strand>TTTGACCAAGTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240576" ref_strand="+" ref_description="SGN-E240576 [cLED-21-K20]">
      <seq>gtgaatctctataaatatcatgcaacttttcaaatgttacacatattttagaatttaggcagaaacaaaaagaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatgggtgaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84528" stop="85520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84828" g_stop="85220" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E240576" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84828" e_stop="85220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTA</genome_strand>
        <mrna_strand>GTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGGTGACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707047" ref_strand="+" ref_description="SGN-E707047 [FA31DF08]">
      <seq>aaaaagaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacatttgaagaggagcgtgatctacaattaggtcgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84594" stop="86586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84894" g_stop="85490" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86286" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="819" r_length="222" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E707047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84894" e_stop="85490"/>
          <exon e_start="86065" e_stop="86286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGAT</genome_strand>
        <mrna_strand>AAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACATTTGAAGAGGAGCGTGATCTACAATTAGGTCGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707065" ref_strand="+" ref_description="SGN-E707065 [FA31DH03]">
      <seq>aaaaagaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84594" stop="86571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84894" g_stop="85490" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86271" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="804" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E707065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84894" e_stop="85490"/>
          <exon e_start="86065" e_stop="86271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTA</genome_strand>
        <mrna_strand>AAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231994" ref_strand="+" ref_description="SGN-E231994 [cLED-7-C2]">
      <seq>aagaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84597" stop="85763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84897" g_stop="85463" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E231994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84897" e_stop="85463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAA</genome_strand>
        <mrna_strand>AAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232970" ref_strand="+" ref_description="SGN-E232970 [cLED-6-I24]">
      <seq>aagaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84597" stop="85755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84897" g_stop="85455" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E232970" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84897" e_stop="85455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGA</genome_strand>
        <mrna_strand>AAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231827" ref_strand="+" ref_description="SGN-E231827 [cLED-7-O1]">
      <seq>aagaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84597" stop="85727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84897" g_stop="85427" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E231827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84897" e_stop="85427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGT</genome_strand>
        <mrna_strand>AAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231787" ref_strand="+" ref_description="SGN-E231787 [cLED-7-A9]">
      <seq>aagaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84597" stop="85723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84897" g_stop="85423" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E231787" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84897" e_stop="85423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTC</genome_strand>
        <mrna_strand>AAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256773" ref_strand="+" ref_description="SGN-E256773 [cLEG-40-K11]">
      <seq>caattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaagggttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgcttacaggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaagtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaagaggtgatactaaggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtatgaaagacggttagtaagttgtccgaccttgattttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84600" stop="85679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84899" g_stop="85380" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E256773" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84899" e_stop="85380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAG</genome_strand>
        <mrna_strand>CAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGGTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGCTTACAGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAAGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAAGAGGTGATACTAAGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTATGAAAGACGGTTAGTAAGTTGTCCGACCTTGATTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255125" ref_strand="+" ref_description="SGN-E255125 [cLEG-31-N8]">
      <seq>gaattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaaccttacgggnnnaaccaaatattagtcaatcctganaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84599" stop="85673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84899" g_stop="85373" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E255125" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84899" e_stop="85373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACC-TAC-GG----ACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGAT</genome_strand>
        <mrna_strand>GAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTTACGGGNNNAACCAAATATTAGTCAATCCTGANAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243826" ref_strand="+" ref_description="SGN-E243826 [cLED-35-A23]">
      <seq>aattcatattttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattctatgaacatttttgtgctggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84600" stop="85623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84900" g_stop="85323" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E243826" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84900" e_stop="85323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAA</genome_strand>
        <mrna_strand>AATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTCTATGAACATTTTTGTGCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248360" ref_strand="+" ref_description="SGN-E248360 [cLEG-1-E3]">
      <seq>tcatattttgttaattntngctttcatatcatggcaaacaagagtccttgtccggtggttttttgtgaacttcgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84659" stop="85783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84903" g_stop="85483" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E248360" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84903" e_stop="85483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAA-AGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATC</genome_strand>
        <mrna_strand>TCATATTTTGTTAATTNTNGCTTTCATATCATGGCAAACAAGAGTCCT-TGTCCGGTGGTTTTTTGTGAACTTCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250751" ref_strand="+" ref_description="SGN-E250751 [cLEG-7-N13]">
      <seq>tcatattttgttaattttcacttcaatttcatggcaaacaaaggcgtatgtccaaaggtttttcgtgacctccgaccattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84603" stop="85718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84903" g_stop="85418" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E250751" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84903" e_stop="85418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAAT</genome_strand>
        <mrna_strand>TCATATTTTGTTAATTTTCACTTCAATTTCATGGCAAACAAAGGCGTATGTCCAAAGGTTTTTCGTGACCTCCGACCATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698346" ref_strand="+" ref_description="SGN-E698346 [FA06AB01]">
      <seq>ctattttgttaattttcatttcaatttcaccccaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84606" stop="86482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84905" g_stop="85490" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86182" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="704" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E698346" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84905" e_stop="85490"/>
          <exon e_start="86065" e_stop="86182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAA</genome_strand>
        <mrna_strand>CTATTTTGTTAATTTTCATTTCAATTTCACCCCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247684" ref_strand="+" ref_description="SGN-E247684 [cLEF-42-M1]">
      <seq>tttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatggttttcttcagacagccgaattaaccaagtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84609" stop="85777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84909" g_stop="85477" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E247684" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84909" e_stop="85477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCT</genome_strand>
        <mrna_strand>TTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGGTTTTCTTCAGACAGCCGAATTAACCAAGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327536" ref_strand="+" ref_description="SGN-E327536 [cTOC-20-I3]">
      <seq>ttgttaattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84610" stop="86400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84910" g_stop="85490" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86100" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="617" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E327536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84910" e_stop="85490"/>
          <exon e_start="86065" e_stop="86100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGT</genome_strand>
        <mrna_strand>TTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327788" ref_strand="+" ref_description="SGN-E327788 [cTOC-20-J3]">
      <seq>ttgataattttcatttcaatttcatggcaaacgaagtcatatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctccaagatgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacataagtatttgggtaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84610" stop="85537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84910" g_stop="85237" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E327788" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84910" e_stop="85237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAA</genome_strand>
        <mrna_strand>TTGATAATTTTCATTTCAATTTCATGGCAAACGAAGTCATATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCCAAGATGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACATAAGTATTTGGGTAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253237" ref_strand="+" ref_description="SGN-E253237 [cLEG-26-P20]">
      <seq>taattttcatttcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgtttcaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattacatcatcgttaacacttcaaatggcatcgactgattctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84614" stop="85747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84914" g_stop="85447" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E253237" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84914" e_stop="85447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTT</genome_strand>
        <mrna_strand>TAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTTCAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTACATCATCGTTAACACTTCAAATGGCATCGACTGATTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701903" ref_strand="+" ref_description="SGN-E701903 [FA17BA12]">
      <seq>ttttcatttcaatttcatggcaaacaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctgaagatacagctattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84617" stop="86664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84917" g_stop="85490" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86364" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="873" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E701903" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84917" e_stop="85490"/>
          <exon e_start="86065" e_stop="86364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAA</genome_strand>
        <mrna_strand>TTTTCATTTCAATTTCATGGCAAAC-AAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E207569" ref_strand="+" ref_description="SGN-E207569 [cLEC-32-G1]">
      <seq>tcaatttcatggcaaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctacgcatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84625" stop="85624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84925" g_stop="85324" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E207569" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84925" e_stop="85324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAA</genome_strand>
        <mrna_strand>TCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTACGCATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327666" ref_strand="+" ref_description="SGN-E327666 [cTOC-20-N2]">
      <seq>tttcatggcaaacaaagtcgtatgtccaaaggtttttcttgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84629" stop="85694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84929" g_stop="85394" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E327666" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84929" e_stop="85394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTAT</genome_strand>
        <mrna_strand>TTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCTTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTC-AATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701840" ref_strand="+" ref_description="SGN-E701840 [FA17AD03]">
      <seq>aaacaaagtcgtatgtccaaaggtttttcgtgacctccgacgattcgctcgatgtctaaacacagctccgactgtcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattangtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgntgagttactcattgatgctgaagatacagctatttcaacagcgattgattactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84638" stop="86681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84938" g_stop="85490" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86381" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="870" r_length="317" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E701840" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84938" e_stop="85490"/>
          <exon e_start="86065" e_stop="86381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTT</genome_strand>
        <mrna_strand>AAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTANGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGNTGAGTTACTCATTGATGCTGAAGATACAGCTATTTCAACAGCGATTGATTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255558" ref_strand="+" ref_description="SGN-E255558 [cLEG-30-L24]">
      <seq>tcccacctatgaatttcaccggctactatggttctacgaacgtaacagtaccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84712" stop="86626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85012" g_stop="85490" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86326" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="741" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E255558" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85012" e_stop="85490"/>
          <exon e_start="86065" e_stop="86326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATG</genome_strand>
        <mrna_strand>TCCCACCTATGAATTTCACCGGCTACTATGGTTCTACGAACGTAACAGTACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254089" ref_strand="+" ref_description="SGN-E254089 [cLEG-34-J9]">
      <seq>tcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84712" stop="86534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85012" g_stop="85490" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86234" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="649" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E254089" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85012" e_stop="85490"/>
          <exon e_start="86065" e_stop="86234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAG</genome_strand>
        <mrna_strand>TCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252189" ref_strand="+" ref_description="SGN-E252189 [cLEG-8-N7]">
      <seq>tcccacctatgaatttcaccggcaactatggttctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgantttaaaagnggggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcaaacagccgaattaaccaagtctcttccatcctgatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84712" stop="86526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85012" g_stop="85490" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86226" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="646" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E252189" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85012" e_stop="85490"/>
          <exon e_start="86065" e_stop="86226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGA-TTTAAAA----GGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACG</genome_strand>
        <mrna_strand>TCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGANTTTAAAAGNGGGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAAACAGCCGAATTAACCAAGTCTCTTCCATCCTGATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253179" ref_strand="+" ref_description="SGN-E253179 [cLEG-26-G18]">
      <seq>ttctacgaacgtttcaataccgatgttacaacctacggaccaggggttatttaatgggtgagaaaagagtactcaatttttatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatcagggtaatgaattcgaaatgcatgcttatgccagtattgaaggaggtgatactatggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaagaaagacggttagtaagttgtcgagccttgatttaaaaagcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgttttttttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgcttaaaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84743" stop="86424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85043" g_stop="85490" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86124" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="509" r_length="60" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E253179" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85043" e_stop="85490"/>
          <exon e_start="86065" e_stop="86124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAAT-CCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATG</genome_strand>
        <mrna_strand>TTCTACGAACGTTTCAATACCGATGTTACAACCTACGGACCAGGGGTTATTTAATGGGTGAGAAAAGAGTACTCAATTTTTATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATCAGGGTAATGAATTCGAAATGCATGCTTATGCCAGTATTGAAGGAGGTGATACTATGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAAGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAAGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTTTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTTAAAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252279" ref_strand="+" ref_description="SGN-E252279 [cLEG-12-F1]">
      <seq>ctacgaacgtaacaataccgacgttacaacctacggaccaaatattagtcaatcctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtatccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84745" stop="86529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85045" g_stop="85490" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86229" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="611" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E252279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85045" e_stop="85490"/>
          <exon e_start="86065" e_stop="86229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTG</genome_strand>
        <mrna_strand>CTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251747" ref_strand="+" ref_description="SGN-E251747 [cLEG-15-F7]">
      <seq>cctgagaaaaaagtactcaattttgatgatgttaaagagttgtttacgggtgtagccacctcgaagttgattagatcatcgttaacacttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84798" stop="86532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85098" g_stop="85490" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86232" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="561" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E251747" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85098" e_stop="85490"/>
          <exon e_start="86065" e_stop="86232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAA</genome_strand>
        <mrna_strand>CCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTAGCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273183" ref_strand="+" ref_description="SGN-E273183 [cLEM-24-J20]">
      <seq>gaggtaaccaccttcaaatggcatcgattgagtctatggttgacctaggtatttgggtaatgaattcgaaattcatgccgtatgcccagtatttaaggaggtgatacctagggtttgttaaaaggaccattttatgaaccatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagcccttgatttaaaaggcatgccttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaaaagcgtgatctacaattaggtcgtgatagacttgagaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84878" stop="86601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85186" g_stop="85490" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="324" r_length="312" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86301" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="561" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E273183" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85186" e_stop="85490"/>
          <exon e_start="86065" e_stop="86301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATG-CGTATG-CCAGTATTTAAGGAGGTGATA-CTAGGGTTTGTTAAAAGGA-CATTTTATGAA-CATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAG-CCTTGATTTAAAAGGCATG-CTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATT</genome_strand>
        <mrna_strand>TTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCCGTATGCCCAGTATTTAAGGAGGTGATACCTAGGGTTTGTTAAAAGGACCATTTTATGAACCATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCCTTGATTTAAAAGGCATGCCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAAAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705338" ref_strand="+" ref_description="SGN-E705338 [FA26DD07]">
      <seq>tatggttgacctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctgaagatacagctattcaaccagcgattgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcaaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaattggcttcaagtttaggttttcaatctcccattcacgatagcattgaatatacacataaattgctacattcttgtgctgaatttatgtttgatgaaattgctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84908" stop="86967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85208" g_stop="85490" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86667" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="886" r_length="603" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E705338" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85208" e_stop="85490"/>
          <exon e_start="86065" e_stop="86667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACAT-AATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAAT</genome_strand>
        <mrna_strand>TATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCCATTCACGATAGCATTGAATATACACATAAATTGCTAC-ATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555814" ref_strand="+" ref_description="SGN-E555814 [cTSD-1-H7]">
      <seq>cctaggtatttgggtaatgaattcgaaattcatgcgtatgccagtatttaaggaggtgatactagggtttgttaaaaggacattttatgaacatttttgtgctggaaaagacttaattgaagtaggaaagacggttagtaagttgtcgagccttgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctgaagatacagctattcaaccagcgattgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcaaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaattggcttcaagtttaggttttcaatctccaattcacgatagcattgaatatacacataattgctacaattcttgtgctgaattatgtttgatgaaattgctaatggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="84917" stop="86971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85217" g_stop="85490" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86671" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="880" r_length="606" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E555814" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85217" e_stop="85490"/>
          <exon e_start="86065" e_stop="86671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTT</genome_strand>
        <mrna_strand>CCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAA-TTATGTTTGATGAAATTGCTAATGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263552" ref_strand="+" ref_description="SGN-E263552 [cLEG-60-M14]">
      <seq>tgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctgaagatacagctattcaaccagcgattgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcaaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaattggcttcaagtttaggttttcaatctccaattcacgatagcattgaatatacacataattgctacaattcttgtgctgaatttatgtttgatgaaattgctaatggttcaggagctgttggtcttgctactcataatattgagtcaggaaaacttgctgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="85070" stop="87026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85370" g_stop="85490" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86710" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="767" r_length="646" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86711" i_stop="86798" i_length="88">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86799" g_stop="86813" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="782" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E263552" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85370" e_stop="85490"/>
          <exon e_start="86065" e_stop="86710"/>
          <exon e_start="86799" e_stop="86813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAGGTAAAATTTCGTGTCACTACACTTTTATTTACTTAATTATATAAGTAGTATTCTCAATATTATATCTTTCGATTTTTTTTATAAATAGGAAAACTTGCTGCAT</genome_strand>
        <mrna_strand>TGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGGTCTTGCTACTCATAATATTGAGTCAG........................................................................................GAAAACTTGCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E259586" ref_strand="+" ref_description="SGN-E259586 [cLEG-42-L6]">
      <seq>tgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctgaagatacagctattcaaccagcgattgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcaaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="85070" stop="86864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85370" g_stop="85490" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86564" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="621" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E259586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85370" e_stop="85490"/>
          <exon e_start="86065" e_stop="86564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATT</genome_strand>
        <mrna_strand>TGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258096" ref_strand="+" ref_description="SGN-E258096 [cLEG-48-O22]">
      <seq>tgatttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="85070" stop="86648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85370" g_stop="85490" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86348" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="405" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E258096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85370" e_stop="85490"/>
          <exon e_start="86065" e_stop="86348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGA</genome_strand>
        <mrna_strand>TGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257927" ref_strand="+" ref_description="SGN-E257927 [cLEG-48-I1]">
      <seq>tttaaaaggcatgcttgattatggtgtggaacatgcaatggataatgagtcttgtgatcgaagtatgaatgtttttcttcagacagccgaattaaccaagtctcttccatcctcatctgtcagttttgtggtagtaaaaataactgcaatttgtacaccaaagttgctcaaaagaatgagtgatttactgaaatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="85073" stop="86517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85373" g_stop="85490" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86065" g_stop="86217" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="271" r_length="153" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E257927" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85373" e_stop="85490"/>
          <exon e_start="86065" e_stop="86217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCTGTAAGATCAAAATCTTCTTTTTGTTATTACTTCTAGTTTTAAATTGAACTAATTAATTCTATATATTTGAAAATTCTAAATTTCCAAGTCTATTGGAATAGGCTAGAAAGAAAAACTAAGTCTCCGCATGAGTTTTTACAAAATTGCAATAAATGACAGCTGACGCAACAAAACGTGTCTATTGCATGGAATTTATATAAAATATGCCTTTTTATTCTCATTTATCTTTTTCCTTAAGTTACGTATATTCCTCTTAGAATAACCTGATTTCTAACACGATTAGATTCTTCTCTATGACTTTTCAACTAAAGACATAAAGATTTACCCTTCCTACTAAATTAAAATGTTTTTAAAAATAATTTGAAGAAAAAAACTTGATGAATACTTAACAGAGCCAAATCATAAAAATAAAGACTTTTTTGCGTTGCTTGGTAATAAATTTTTTTCATGTGTACTGTTTTAGTATGTCATAAAATTTTGTATATTCTTATAAAAAATAACTTACTTGATTGCTGGTGTGTAGAATCGTCAACATTCTTTTTAATACTAAGTAGTGTGTACTGTGATGAAACAGGTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTT</genome_strand>
        <mrna_strand>TTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAAATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706248" ref_strand="+" ref_description="SGN-E706248 [FA29BG04]">
      <seq>gttgctcaaaagaatgagtgatttactgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctgaagatacagctattcaaccagcgattgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcaaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaattggcttcaagtttaggttttcaatctccaattcacgatagcattgaatatacacataattgctacaattcttgtgctgaatttatgtttgatgaaattgctaatggttcaggagctgttgttcttgctactcataatattgagtcaggaaaacttgctgcatccagggcgatagatttagggattagaaaggatagtaaaaagctccaatttgctcagctatatggtatggcagaagggctttcatttgggctgagaaatgcaggatttcaagtgagtaaatatttaccatttggacctgtagagcaagttatgccttaccttattagaagagctgaagaaaatagaggtcttttgtctacatctgccttcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="85809" stop="87325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86109" g_stop="86710" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86711" i_stop="86798" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86799" g_stop="87025" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="829" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E706248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86109" e_stop="86710"/>
          <exon e_start="86799" e_stop="87025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAGGTAAAATTTCGTGTCACTACACTTTTATTTACTTAATTATATAAGTAGTATTCTCAATATTATATCTTTCGATTTTTTTTATAAATAGGAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGAT</genome_strand>
        <mrna_strand>GTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAG........................................................................................GAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242419" ref_strand="+" ref_description="SGN-E242419 [cLED-30-O16]">
      <seq>tgagatgggaacagaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctgaagatacagctattcaaccagcgattgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcaaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaattggcttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="85835" stop="86873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86135" g_stop="86573" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E242419" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86135" e_stop="86573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAG</genome_strand>
        <mrna_strand>TGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206967" ref_strand="+" ref_description="SGN-E206967 [cLEC-33-G2]">
      <seq>agaaggatccttcattcaatcttccatggaagcaaaagacgcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctgaagatacagctattcaaccagcgattgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcagaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaattggcttcaagtttaggttttcaatctccaattcacgatagcattgaatatacacataattgctacaattcttgtgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="85847" stop="86942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86147" g_stop="86642" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E206967" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86147" e_stop="86642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGA</genome_strand>
        <mrna_strand>AGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAGAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258611" ref_strand="+" ref_description="SGN-E258611 [cLEG-47-P8]">
      <seq>gcttccacttttcgccgaatcgagtcctttttatcacacgttgaaaagaccagaacctctaacaattgaagaagagcgtgatctacaattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctgaagatacagctattcaaccagcgattgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcaaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaattggcttcaagtttaaggtttcaatctccaattcacgatagcattgaatatacacataattgctacaattcttgtgctgaatttatgtttgatgaaattgctaatggttcaggagctgttgttcttgctactcataatattgagtcaggaaaacttgctgcatcccaggcgatagatttagggattagaaaggataggtaaaagctccaatttgctcagctatatggtatggcagaagggctttcatttgggctgagaaatgcaggatttcaagtgagtaaatatttaccatttggacctgtagagcaagttatgccttaccttattagaagagctgaagaaaatagaggtcttttgtctacatctgccttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="85887" stop="87323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86187" g_stop="86710" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86711" i_stop="86798" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86799" g_stop="87023" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="749" r_length="225" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E258611" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86187" e_stop="86710"/>
          <exon e_start="86799" e_stop="87023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAGGTAAAATTTCGTGTCACTACACTTTTATTTACTTAATTATATAAGTAGTATTCTCAATATTATATCTTTCGATTTTTTTTATAAATAGGAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCG</genome_strand>
        <mrna_strand>GCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAAGGTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAG........................................................................................GAAAACTTGCTGCATCCCAGGCGATAGATTTAGGGATTAGAAAGGATAGGTAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248341" ref_strand="+" ref_description="SGN-E248341 [cLEG-1-D10]">
      <seq>tacaattatgtcgtgatagacttgagaaaatttgcgagaaatgcctggaacttgatggggagttactcagcgatgctggagatacagctatccaaccagcgactgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcaaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtctaagctagtaagaggcgctgatatgtcaagtgaaaatcaattggcttcaagtttatgttttcaatctccaattcacgatagcattgaatatacacataattgctacaattcttgtgctgaatttatgtttgatgaaattgctaatggttcacgagctggtggtcttgctactcataatattgagtcaggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="85970" stop="87016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86270" g_stop="86710" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86711" i_stop="86798" i_length="88">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86799" g_stop="86804" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="447" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E248341" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86270" e_stop="86710"/>
          <exon e_start="86799" e_stop="86804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAGGTAAAATTTCGTGTCACTACACTTTTATTTACTTAATTATATAAGTAGTATTCTCAATATTATATCTTTCGATTTTTTTTATAAATAGGAAAAC</genome_strand>
        <mrna_strand>TACAATTATGTCGTGATAGACTTGAGAAAATTTGCGAGAAATGCCTGGAACTTGATGGGGAGTTACTCAGCGATGCTGGAGATACAGCTATCCAACCAGCGACTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTCTAAGCTAGTAAGAGGCGCTGATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTATGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCACGAGCTGGTGGTCTTGCTACTCATAATATTGAGTCAG........................................................................................GAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394746" ref_strand="+" ref_description="SGN-E394746 [TUS-42-D11]">
      <seq>caattaggtcgtgcccttaatgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctgaagatacagcccctcaaccagcgattgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcaaaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="85992" stop="86770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86272" g_stop="86470" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E394746" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86272" e_stop="86470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAAC</genome_strand>
        <mrna_strand>CAATTAGGTCGTGCCCTTAATGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCCCCTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248316" ref_strand="+" ref_description="SGN-E248316 [cLEG-1-K19]">
      <seq>aattaggtcgtgatagacttgagaaaatttgcaagaaatgcctggaacttgatgttgagttactcattgatgctgaagatacagctattcaaccagcgattgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcaaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaattggcttcaagtttaggttttcaatctccaattcacgatagcattgaatatacacataattgctacaattcttgtgctgaatttatgtttgatgaaattgctaatggttcaggagctgttgttcttgctactcataatattgagtcaggaaaacttgctgcatccagggcgatagatttagggattagaaaggatagtaaaaagctccaatttgctcagctatatggtatggcagaagggctttcatttgggctgagaaatgcaggatttcaagtgagtaaatatttaccatttggacctgtagagcaagttatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="85973" stop="87267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86273" g_stop="86710" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86711" i_stop="86798" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86799" g_stop="86967" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="607" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E248316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86273" e_stop="86710"/>
          <exon e_start="86799" e_stop="86967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAGGTAAAATTTCGTGTCACTACACTTTTATTTACTTAATTATATAAGTAGTATTCTCAATATTATATCTTTCGATTTTTTTTATAAATAGGAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCC</genome_strand>
        <mrna_strand>AATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAG........................................................................................GAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710973" ref_strand="+" ref_description="SGN-E710973 [FA57CC06]">
      <seq>aatgcctggaacttgatgttgagttactcattgatgctgaagatacagctattcaaccagcgattgattacttagcatattcagcggcaattaagtatcacaaagaggatcatcctttgttatttggaacaattcaagcttacttaaaagactcaaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaattggcttcaagtttaggttttcaatctccaattcacgatagcattgaatatacacataattgctacaattcttgtgctgaatttatgtttgatgaaattgctaatggttcaggagctgttgttcttgctactcataatattgagtcaggaaaacttgctgcatccagggcgatagatttagggattagaaaggatagtaaaaagctccaatttgctcagctatatggtatggcagaagggctttcatttgggctgagaaatgcaggatttcaagtgagtaaatatttaccatttggacctgtagagcaagttatgccttaccttattagaagagctgaagaaaatagaggtcttttgtctacatctgccttcgatagacaactcatgaggaaggagttaatcagaagatttgatgtggcaactgcataaatcttgagaactatggtagtgtatattagatataggtgatattactacgaataaatcgaacgtgctttcaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="86009" stop="87542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86309" g_stop="86710" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86711" i_stop="86798" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86799" g_stop="87039" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="643" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87040" i_stop="87127" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87128" g_stop="87242" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="758" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E710973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86309" e_stop="86710"/>
          <exon e_start="86799" e_stop="87039"/>
          <exon e_start="87128" e_stop="87242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAGGTAAAATTTCGTGTCACTACACTTTTATTTACTTAATTATATAAGTAGTATTCTCAATATTATATCTTTCGATTTTTTTTATAAATAGGAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGATAGACAACTCATGAGGTAATTAAATATCATTAATAATTTCGTTAACAAAGGAGAAGTTTATACTGAAATGTTTTTATTAATTTTGTAAATTATTTTCTTGCAGGAAGGAGTTAATCAGAAGATTTGATGTGGCAACTGCATAAATCTTGAGAACTATGGTAGTGTATATTAGATATAGGTGATATTACTACGAATAAATCGAACGTGCTTTCAAGTAT</genome_strand>
        <mrna_strand>AATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAG........................................................................................GAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGATAGACAACTCATGAG........................................................................................GAAGGAGTTAATCAGAAGATTTGATGTGGCAACTGCATAAATCTTGAGAACTATGGTAGTGTATATTAGATATAGGTGATATTACTACGAATAAATCGAACGTGCTTTCAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554223" ref_strand="-" ref_description="SGN-E554223 [cTSC-3-J5]">
      <seq>tcaaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaattggcttcaagtttaggttttcaatctccaattcacgatagcattgaatatacacataattgctacaattcttgtgctgaatttatgtttgatgaaattgctaatggttcaggagctgttgttcttgctactcataatattgagtcaggaaaacttgctgcatccagggcgatagatttagggattagaaaggatagtaaaaagctccaatttgctcagctatatggtatggcagaagggctttcatttgggctgagaaatgcaggatttcaagtgagtaaatatttaccatttggacctgtagagcaagttatgccttaccttattagaagagctgaagaaaatagaggtcttttgtctacatctgccttcgatagacaactcatgaggaaggagttaatcagaagatttgatgtggcaactgcataaatcttgagaactatggtagtgtatattagatataggtgatattactacgaataaatcgaacgtgctttcaagtatttgttgaaagtttttaggtacgaatgctgagagaagttaaagggacaagcaatgaaggtctaattaacgtaaaattgtttggaaatagacttgttgcaacaaaaaaaaatcctatcaatgtactattaattttctttttatctctttcttgtattagtatggaagtttattccaacttttgtaattggtttttttataaatacaaattaaagttgtcgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="86161" stop="87763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86461" g_stop="86710" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86711" i_stop="86798" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86799" g_stop="87039" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="491" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87040" i_stop="87127" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87128" g_stop="87465" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="829" r_length="338" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E554223" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554223" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86461" e_stop="86710"/>
          <exon e_start="86799" e_stop="87039"/>
          <exon e_start="87128" e_stop="87465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAGGTAAAATTTCGTGTCACTACACTTTTATTTACTTAATTATATAAGTAGTATTCTCAATATTATATCTTTCGATTTTTTTTATAAATAGGAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGATAGACAACTCATGAGGTAATTAAATATCATTAATAATTTCGTTAACAAAGGAGAAGTTTATACTGAAATGTTTTTATTAATTTTGTAAATTATTTTCTTGCAGGAAGGAGTTAATCAGAAGATTTGATGTGGCAACTGCATAAATCTTGAGAACTATGGTAGTGTATATTAGATATAGGTGATATTACTACGAATAAATCGAACGTGCTTTCAAGTATTTGTTGAAAGTTTTTAGGTACGAATGCTGAGAGAAGTTAAAGGGACAAGCAATGAAGGTCTAATTAACGTAAAATTGTTTGGAAATAGACTTGTTGCAACAAAAAAAAATCCTATCAATGTACTATTAATTTTCTTTTTATCTCTTTCTTGTATTAGTATGGAAGTTTATTCCAACTTTTGTAATTGGTTTTTTTATAAATACAAATTAAAGTTGTCGATATT</genome_strand>
        <mrna_strand>TCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAG........................................................................................GAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGATAGACAACTCATGAG........................................................................................GAAGGAGTTAATCAGAAGATTTGATGTGGCAACTGCATAAATCTTGAGAACTATGGTAGTGTATATTAGATATAGGTGATATTACTACGAATAAATCGAACGTGCTTTCAAGTATTTGTTGAAAGTTTTTAGGTACGAATGCTGAGAGAAGTTAAAGGGACAAGCAATGAAGGTCTAATTAACGTAAAATTGTTTGGAAATAGACTTGTTGCAACAAAAAAAAATCCTATCAATGTACTATTAATTTTCTTTTTATCTCTTTCTTGTATTAGTATGGAAGTTTATTCCAACTTTTGTAATTGGTTTTTTTATAAATACAAATTAAAGTTGTCGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238622" ref_strand="+" ref_description="SGN-E238622 [cLED-17-P2]">
      <seq>aaaagaacgtatgataatcgctaaaaaggcagcagagaaaatgggagttccaatggggtttaagcttgtaagaggtgcttatatgtcaagtgaaaatcaattggcttcaagtttaggttttcaatctccaattcacgatagcattgaatatacacataattgctacaattcttgtgctgaatttatgtttgatgaaattgctaatggttcaggagctgttgttcttgctactcataatattgagtcaggaaaacttgctgcatccagggcgatagatttagggattagaaaggatagtaaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="86163" stop="87155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86463" g_stop="86710" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86711" i_stop="86798" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86799" g_stop="86855" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="305" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E238622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86463" e_stop="86710"/>
          <exon e_start="86799" e_stop="86855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAGGTAAAATTTCGTGTCACTACACTTTTATTTACTTAATTATATAAGTAGTATTCTCAATATTATATCTTTCGATTTTTTTTATAAATAGGAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGC</genome_strand>
        <mrna_strand>AAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAG........................................................................................GAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554985" ref_strand="+" ref_description="SGN-E554985 [cTSC-6-A5]">
      <seq>gtcaagtgaaaatcaattggcttcaagtttaggttttcaatctccaattcacgatagcattgaatatacacataattgctacaattcttgtgctgaatttatgtttgatgaaattgctaatggttcaggagctgttgttcttgctactcataatattgagtcaggaaaacttgctgcatccagggcgatagatttagggattagaaaggatagtaaaaagctccaatttgctcagctatatggtatggcagaagggctttcatttgggctgagaaatgcaggatttcaagtgagtaaatatttaccatttggacctgtagagcaagttatgccttaccttattagaagagctgaagaaaatagaggtcttttgtctacatctgccttcgatagacaactcatgaggaaggagttaatcagaagatttgatgtggcaactgcataaatcttgagaactatggtagtgtatattagatataggtgatattactacgaataaatcgaacgtgctttcaagtatttgttgaaagtttttaggtacgaatgctgagagaagttaaagggacaagcaatgaaggtctaattaacgtaaaattgtttggaaatagacttgttgcaacaaaaaaaaatcctatcaatgtactattaattttctttttatctctttcttgtattagtatggaagtttattccaacttttgtaattggtttttttataaatacaaattaaagttgtcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="86247" stop="87762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86547" g_stop="86710" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86711" i_stop="86798" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86799" g_stop="87039" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="405" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87040" i_stop="87127" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87128" g_stop="87462" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="740" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E554985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86547" e_stop="86710"/>
          <exon e_start="86799" e_stop="87039"/>
          <exon e_start="87128" e_stop="87462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAGGTAAAATTTCGTGTCACTACACTTTTATTTACTTAATTATATAAGTAGTATTCTCAATATTATATCTTTCGATTTTTTTTATAAATAGGAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGATAGACAACTCATGAGGTAATTAAATATCATTAATAATTTCGTTAACAAAGGAGAAGTTTATACTGAAATGTTTTTATTAATTTTGTAAATTATTTTCTTGCAGGAAGGAGTTAATCAGAAGATTTGATGTGGCAACTGCATAAATCTTGAGAACTATGGTAGTGTATATTAGATATAGGTGATATTACTACGAATAAATCGAACGTGCTTTCAAGTATTTGTTGAAAGTTTTTAGGTACGAATGCTGAGAGAAGTTAAAGGGACAAGCAATGAAGGTCTAATTAACGTAAAATTGTTTGGAAATAGACTTGTTGCAACAAAAAAAAATCCTATCAATGTACTATTAATTTTCTTTTTATCTCTTTCTTGTATTAGTATGGAAGTTTATTCCAACTTTTGTAATTGGTTTTTTTATAAATACAAATTAAAGTTGTCGAT</genome_strand>
        <mrna_strand>GTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAG........................................................................................GAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGATAGACAACTCATGAG........................................................................................GAAGGAGTTAATCAGAAGATTTGATGTGGCAACTGCATAAATCTTGAGAACTATGGTAGTGTATATTAGATATAGGTGATATTACTACGAATAAATCGAACGTGCTTTCAAGTATTTGTTGAAAGTTTTTAGGTACGAATGCTGAGAGAAGTTAAAGGGACAAGCAATGAAGGTCTAATTAACGTAAAATTGTTTGGAAATAGACTTGTTGCAACAAAAAAAAATCCTATCAATGTACTATTAATTTTCTTTTTATCTCTTTCTTGTATTAGTATGGAAGTTTATTCCAACTTTTGTAATTGGTTTTTTTATAAATACAAATTAAAGTTGTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253926" ref_strand="-" ref_description="SGN-E253926 [cLEG-28-B23]">
      <seq>agggcgatagatttagggattagaaaggatagtaaaaagctccaatttgctcagctatatggtatggcagaagggctttcatttgggctgagaaatgcaggatttcaagtgagtaaatatttaccatttggacctgtagagcaagttatgccttaccttattagaagagctgaagaaaatagaggtcttttgtctacatctgccttcgatagacaactcatgaggaaggagttaatcagaagatttgatgtggcaactgcataaatcttgagaactatggtagtgtatattagatataggtgatattactacgaataaatcgaacgtgctttcaagtatttgttgaaagtttttaggtacgaatgctgagagaagttaaagggacaagcaatgaaggtctaattaacgtaaaattgtttggaaatagacttgttgcaacaaaaaaaaatcctatcaatgtactattaattttctttttatctctttcttgtattagtatggaagtttattccaacttttgtaattggtttttttataaatacaaattaaagttgtcgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="86516" stop="87763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86816" g_stop="87039" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87040" i_stop="87127" i_length="88">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87128" g_stop="87460" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="557" r_length="333" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="577"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E253926" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253926" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86816" e_stop="87039"/>
          <exon e_start="87128" e_stop="87460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGATAGACAACTCATGAGGTAATTAAATATCATTAATAATTTCGTTAACAAAGGAGAAGTTTATACTGAAATGTTTTTATTAATTTTGTAAATTATTTTCTTGCAGGAAGGAGTTAATCAGAAGATTTGATGTGGCAACTGCATAAATCTTGAGAACTATGGTAGTGTATATTAGATATAGGTGATATTACTACGAATAAATCGAACGTGCTTTCAAGTATTTGTTGAAAGTTTTTAGGTACGAATGCTGAGAGAAGTTAAAGGGACAAGCAATGAAGGTCTAATTAACGTAAAATTGTTTGGAAATAGACTTGTTGCAACAAAAAAAAATCCTATCAATGTACTATTAATTTTCTTTTTATCTCTTTCTTGTATTAGTATGGAAGTTTATTCCAACTTTTGTAATTGGTTTTTTTATAAATACAAATTAAAGTTGTCG</genome_strand>
        <mrna_strand>AGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGATAGACAACTCATGAG........................................................................................GAAGGAGTTAATCAGAAGATTTGATGTGGCAACTGCATAAATCTTGAGAACTATGGTAGTGTATATTAGATATAGGTGATATTACTACGAATAAATCGAACGTGCTTTCAAGTATTTGTTGAAAGTTTTTAGGTACGAATGCTGAGAGAAGTTAAAGGGACAAGCAATGAAGGTCTAATTAACGTAAAATTGTTTGGAAATAGACTTGTTGCAACAAAAAAAAATCCTATCAATGTACTATTAATTTTCTTTTTATCTCTTTCTTGTATTAGTATGGAAGTTTATTCCAACTTTTGTAATTGGTTTTTTTATAAATACAAATTAAAGTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315199" ref_strand="+" ref_description="SGN-E315199 [cTOA-24-H2]">
      <seq>agagagagagagaattaaaaaaattataaacacaaaaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88272" stop="89489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88567" g_stop="89189" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E315199" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88567" e_stop="89189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGAGAGAGAATTAAAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCC</genome_strand>
        <mrna_strand>AGAGAGAGAGAGAATTAAAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270799" ref_strand="+" ref_description="SGN-E270799 [cLEM-6-G15]">
      <seq>gagagagaattaaaaaaattataaacacaaaaaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88272" stop="89406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88572" g_stop="89106" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E270799" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88572" e_stop="89106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAGAATTAAAAAAATTATAAACACAAAAAA-AAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGG</genome_strand>
        <mrna_strand>GAGAGAGAATTAAAAAAATTATAAACACAAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361341" ref_strand="+" ref_description="SGN-E361341 [cLPP-6-E5]">
      <seq>agagagaactgaaaaaattataaacacacaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcgcaacaaattaacacaacccttcaccaccaccacgaccatcacaacgttatcaatttcgatgatgttaaggagctattctacggcgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttatgcttgggtttgttaaaaatacattttatgaacatttttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88273" stop="89326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88573" g_stop="89026" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E361341" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88573" e_stop="89026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAATTAAAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCG</genome_strand>
        <mrna_strand>AGAGAGAACTGAAAAAATTATAAACAC-ACAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCGCAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACGTTATCAATTTCGATGATGTTAAGGAGCTATTCTACGGCGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATGCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316959" ref_strand="+" ref_description="SGN-E316959 [cTOA-27-B18]">
      <seq>agagaattaaaaaaattataaacacaaaaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88275" stop="89432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88575" g_stop="89132" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E316959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88575" e_stop="89132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATTAAAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATC</genome_strand>
        <mrna_strand>AGAGAATTAAAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340167" ref_strand="+" ref_description="SGN-E340167 [cTOF-2-O1]">
      <seq>gagaattaaaaaaattataaacacataaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88276" stop="89436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88576" g_stop="89136" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E340167" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88576" e_stop="89136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATTAAAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGT</genome_strand>
        <mrna_strand>GAGAATTAAAAAAATTATAAACACATAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365827" ref_strand="+" ref_description="SGN-E365827 [cLPT-8-I24]">
      <seq>gagaattgaaaaaattataaacacacaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcgcaacaaattaacacaacccttcaccaccaccacgaccatcacaacgttatcaatttcgatgatgttaaggagctattctacggcgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttatgctcgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagttagacggaccattactaatctatctgattctgggttaaaagccatgcttgattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88276" stop="89403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88576" g_stop="89103" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E365827" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88576" e_stop="89103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATTAAAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTAT</genome_strand>
        <mrna_strand>GAGAATTGAAAAAATTATAAACAC-ACAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCGCAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACGTTATCAATTTCGATGATGTTAAGGAGCTATTCTACGGCGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATGCTCGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGTTAGACGGACCATTACTAATCTATCTGATTCTGGGTTAAAAGCCATGCTTGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329439" ref_strand="+" ref_description="SGN-E329439 [cTOD-11-M17]">
      <seq>agaactaaaaaaattataaacacaaaaaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88277" stop="89477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88577" g_stop="89177" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E329439" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88577" e_stop="89177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTAAAAAAATTATAAACAC-AAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAAC</genome_strand>
        <mrna_strand>AGAACTAAAAAAATTATAAACACAAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358471" ref_strand="+" ref_description="SGN-E358471 [cLHT-35-B9]">
      <seq>gaattaaaaaaattataaacacacaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagctattctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttatgcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagttagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88278" stop="89419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88578" g_stop="89119" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E358471" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88578" e_stop="89119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTAAAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCA</genome_strand>
        <mrna_strand>GAATTAAAAAAATTATAAACAC-ACAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTATTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATGCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGTTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358405" ref_strand="+" ref_description="SGN-E358405 [cLHT-35-B11]">
      <seq>gaattaatttaattataaacacacaaaaaaatttcatctgccgcttttcaccgttgcatggccaatcaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagctattctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttatgcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagttagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88327" stop="89418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88578" g_stop="89118" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E358405" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88578" e_stop="89118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTAAAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCC</genome_strand>
        <mrna_strand>GAATTAATTTAATTATAAACAC-ACAAAAAAATTTCATCTGCCGCTTTTCACCGTTGCATGGCCAATCAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTATTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATGCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGTTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746600" ref_strand="+" ref_description="SGN-E746600 [GI|47104150]">
      <seq>attaaaaaaattataaacacaaaaaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcattcgacagacaactcatgaggaaggaattgagcaggagattcgaagtggctacttcttaaattcatattcagaatatgaaatctatattagtaagtaagaaataataaacgaggaaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggaggaagtcagtttttatctttgtgtgtgttatgaaaaataaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatgtactagttccttaagttggtttttatttggtatcgtgttttagaaatagaaatggaagaaggtattcccagagtggagccaaaatgtcgaaattacaaagtgtgtatcagtttctctctctctatcgagacattatgaaataaatcggatttattggcctttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88280" stop="91134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88580" g_stop="89199" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89940" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="1267" r_length="646" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90015" g_stop="90255" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1268" r_stop="1508" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90256" i_stop="90348" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90349" g_stop="90841" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1509" r_stop="2001" r_length="493" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E746600" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2000</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88580" e_stop="89199"/>
          <exon e_start="89295" e_stop="89940"/>
          <exon e_start="90015" e_stop="90255"/>
          <exon e_start="90349" e_stop="90841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAAAAAATTATAAACAC-AAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAGGTAATAATTAAACATAGCACAAAAAAGGAAATGATTAATAACTTTATAATACTCCAAGTTATTAATTCTATTATGGCAATGTGTTGTTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTAATTAACATTTTAAG</genome_strand>
        <mrna_strand>ATTAAAAAAATTATAAACACAAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAG.............................................................................................GAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332419" ref_strand="+" ref_description="SGN-E332419 [cTOD-17-I18]">
      <seq>ttaaaaaaattataaacacaaaaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgntaagatgggaacagaaagatcatcatttaatcttccatgggaagcgagagtcgcttccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88281" stop="89724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88581" g_stop="89199" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89425" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="750" r_length="131" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E332419" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88581" e_stop="89199"/>
          <exon e_start="89295" e_stop="89425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCAT-GGAAGCGAGAGTCGCTTCCCCT</genome_strand>
        <mrna_strand>TTAAAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGNTAAGATGGGAACAGAAAGAT-CATCATTTAATCTTCCATGGGAAGCGAGAGTCGCTTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353990" ref_strand="+" ref_description="SGN-E353990 [cLHT-6-M19]">
      <seq>aaaaaattattaacacacaaaaaaatttcatcttgcgccgcccaccggtgcatggacaataaaggtttttgtccgaaactccttaagaacctaggatttcatgtccgccgtgtgaactcacctgcgacacctatttccgccgtcccaccgctaaattgtactggcgattgtaacgccgtggaacccgcacaacaaattaacacagcccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagctattctacggtgttcccaccacgaaactgattcgatcttcgatgacgatacaaatggctgctattgatcccatggttgatatgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttatgcttgggattgttaaaaatgcattttatgaacattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88284" stop="89323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88584" g_stop="89023" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E353990" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88584" e_stop="89023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTT</genome_strand>
        <mrna_strand>AAAAAATTATTAACACACAAAAA-AATTTCATCTTGCGCCGCCCACCGGTGCATGGACAATAAAGGTTTTTGTCCGAAACTCCTTAAGAACCTAGGATTTCATGTCCGCCGTGTGAACTCACCTGCGACACCTATTTCCGCCGTCCCACCGCTAAATTGTACTGGCGATTGTAACGCCGTGGAACCCGCACAACAAATTAACACAGCCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTATTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGATACAAATGGCTGCTATTGATCCCATGGTTGATATGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATGCTTGGGATTGTTAAAAATGCATTTTATGAACATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272368" ref_strand="+" ref_description="SGN-E272368 [cLEM-19-K15]">
      <seq>aaaaattataaacacaaaaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88285" stop="89428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88585" g_stop="89128" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E272368" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88585" e_stop="89128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATG</genome_strand>
        <mrna_strand>AAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295471" ref_strand="+" ref_description="SGN-E295471 [cLET-23-A24]">
      <seq>aaaattataaacacaaaaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88286" stop="89403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88586" g_stop="89103" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E295471" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88586" e_stop="89103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTAT</genome_strand>
        <mrna_strand>AAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328213" ref_strand="+" ref_description="SGN-E328213 [cTOC-21-K24]">
      <seq>aaattataaacacaaaaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacttctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatgggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88287" stop="89759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88587" g_stop="89199" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89459" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="779" r_length="166" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E328213" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88587" e_stop="89199"/>
          <exon e_start="89295" e_stop="89459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCAT-GGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGT</genome_strand>
        <mrna_strand>AAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACTTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363053" ref_strand="+" ref_description="SGN-E363053 [cLPP-2-B12]">
      <seq>aattataaacacacaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcgcaacaaattaacacaacccttcaccaccaccacgaccatcacaacgttatcaatttcgatgatgttaaggagctattctacggcgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttatgcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagttagacggaccattactaatctatctgattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactacggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagctttgtggtagcaaagataactgctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88288" stop="89627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88588" g_stop="89199" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89327" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="644" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E363053" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88588" e_stop="89199"/>
          <exon e_start="89295" e_stop="89327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATT</genome_strand>
        <mrna_strand>AATTATAAACACACAAAAAA-ATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCGCAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACGTTATCAATTTCGATGATGTTAAGGAGCTATTCTACGGCGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATGCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGTTAGACGGACCATTACTAATCTATCTGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTACGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGCTTTGTGGTAGCAAAGATAACTGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363067" ref_strand="+" ref_description="SGN-E363067 [cLPP-2-H16]">
      <seq>aattataaacacacaaaatttatttcatcttccgccgcccaccgttgcatgggcaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcgcaacaaattaacacaacccttcaccaccaccacgaccatcacaacgttatcaatttcgatgatgttaaggagctattctacggcgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttatgcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagttagacggaccattactaatctatctgattctgggttaaaagccatgcttgattatggggtggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88309" stop="89413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88588" g_stop="89113" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E363067" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88588" e_stop="89113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAAC</genome_strand>
        <mrna_strand>AATTATAAACACACAAAATTTATTTCATCTTCCGCCGCCCACCGTTGCATGGGCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCGCAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACGTTATCAATTTCGATGATGTTAAGGAGCTATTCTACGGCGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATGCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGTTAGACGGACCATTACTAATCTATCTGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323080" ref_strand="+" ref_description="SGN-E323080 [cTOB-28-I6]">
      <seq>ttataaacacaaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatctttctgcagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88290" stop="89508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88590" g_stop="89199" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89303" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="617" r_length="8" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E323080" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88590" e_stop="89199"/>
          <exon e_start="89295" e_stop="89303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATC-TTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTT</genome_strand>
        <mrna_strand>TTATAAACAC--AAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTTCT...............................................................................................GC-AGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345688" ref_strand="+" ref_description="SGN-E345688 [cTOF-18-H21]">
      <seq>ataaacacaaaaaaaaaatttcatcttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagatgagtgatttgttaagatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88292" stop="89674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88592" g_stop="89199" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89374" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="687" r_length="79" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E345688" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88592" e_stop="89199"/>
          <exon e_start="89295" e_stop="89374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGA</genome_strand>
        <mrna_strand>ATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAG-ATGAGTGATTTGTTAAGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363057" ref_strand="+" ref_description="SGN-E363057 [cLPP-2-D12]">
      <seq>caaaaaaattttatcttccgccgcccaccgctgcatggccaaggaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcgcaacatattaacacaacccttcaccaccaccacgaccatcacaacgttatcaatttcgatgatgttaaggagctattctacggcgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggatgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttaaggaggttatgcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagttagacggaccattactaatctatctgattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactacggcgtttattcaaacgattgaatcaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88303" stop="89479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88602" g_stop="89179" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E363057" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88602" e_stop="89179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCA</genome_strand>
        <mrna_strand>CAAAAAAATTTTATCTTCCGCCGCCCACCGCTGCATGGCCAAGGAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCGCAACATATTAACACAACCCTTCACCACCACCACGACCATCACAACGTTATCAATTTCGATGATGTTAAGGAGCTATTCTACGGCGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGATGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAAGGAGGTTATGCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGTTAGACGGACCATTACTAATCTATCTGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTACGGCGTTTATTCAAACGATTGAATCAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222558" ref_strand="+" ref_description="SGN-E222558 [cLEL-16-L22](-)">
      <seq>ccgatagattagtaacggtccgtctagcttccgttaagtctttgccggcgcaaaaatgttcataaaatgtatttttaacaaacccaagaataacctccctaaaaataggcatttccataagtttagaattcattacccacatgcccaaatcaaccatgggatcaatagcagccatttgtaacgtcatcgaagatcgaatcagtttcgtggtgggaacaccgtagaaaagctccttaacatcatcgaaattgataatgttgtgatggtcgtggtggtggtgaagggttgtgttaatttgttgtgcgggttccacggcgttaaaatcgccagtaaaatttagcggtgggacggcggaaagaggtgacggagctgagtttaaacggcggacatgaaatccgaggttcttaaggagtttcggacaaaaaactttattggccatgcaacggtgggaagcggaagatgaaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89374" stop="88305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89074" g_stop="88605" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E222558" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89074" e_stop="88605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATAGATTAGTAACGGTCCGTCTAGCTTCCGTTAAGTCTTTGCCGGCGCAAAAATGTTCATAAAATGTATTTTTAACAAACCCAAGAATAACCTCCCTAAAAATAGGCATTTCCATAAGTTTAGAATTCATTACCCACATGCCCAAATCAACCATGGGATCAATAGCAGCCATTTGTAACGTCATCGAAGATCGAATCAGTTTCGTGGTGGGAACACCGTAGAAAAGCTCCTTAACATCATCGAAATTGATAATGTTGTGATGGTCGTGGTGGTGGTGAAGGGTTGTGTTAATTTGTTGTGCGGGTTCCACGGCGTTAAAATCGCCAGTAAAATTTAGCGGTGGGACGGCGGAAAGAGGTGACGGAGCTGAGTTTAAACGGCGGACATGAAATCCGAGGTTCTTAAGGAGTTTCGGACAAAAAACTTTATTGGCCATGCAACGGTGGGCGGCGGAAGATGAAATTTTT</genome_strand>
        <mrna_strand>CCGATAGATTAGTAACGGTCCGTCTAGCTTCCGTTAAGTCTTTGCCGGCGCAAAAATGTTCATAAAATGTATTTTTAACAAACCCAAGAATAACCTCCCTAAAAATAGGCATTTCCATAAGTTTAGAATTCATTACCCACATGCCCAAATCAACCATGGGATCAATAGCAGCCATTTGTAACGTCATCGAAGATCGAATCAGTTTCGTGGTGGGAACACCGTAGAAAAGCTCCTTAACATCATCGAAATTGATAATGTTGTGATGGTCGTGGTGGTGGTGAAGGGTTGTGTTAATTTGTTGTGCGGGTTCCACGGCGTTAAAATCGCCAGTAAAATTTAGCGGTGGGACGGCGGAAAGAGGTGACGGAGCTGAGTTTAAACGGCGGACATGAAATCCGAGGTTCTTAAGGAGTTTCGGACAAAAAACTTTATTGGCCATGCAACGGTGGGAAGCGGAAGATGAAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705760" ref_strand="+" ref_description="SGN-E705760 [FA28AC06]">
      <seq>cttccgccgcccaccgttgcatggccaataaagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagtttcattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88316" stop="89914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88616" g_stop="89199" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89614" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="904" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E705760" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88616" e_stop="89199"/>
          <exon e_start="89295" e_stop="89614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGC</genome_strand>
        <mrna_strand>CTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTTCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328203" ref_strand="+" ref_description="SGN-E328203 [cTOC-21-G24]">
      <seq>ccgccgcccaccgttgcatggttaatccagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtgtaaactcagctccgtcacttctttccgccgtcccaccgctaaattttactggcgattttaacgccggggaacccgcacaacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88319" stop="89081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88619" g_stop="88781" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E328203" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88619" e_stop="88781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAAT</genome_strand>
        <mrna_strand>CCGCCGCCCACCGTTGCATGGTTAATCCAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTGTAAACTCAGCTCCGTCACTTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGGGGAACCCGCACAACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E222233" ref_strand="+" ref_description="SGN-E222233 [cLEL-16-N22](-)">
      <seq>tgggatcaatagcagccacttgtaacgtcatcgaagatcgaatcagtttcgtggtgggaacaccgtagaaaagctcctcaacatcatcgaaattgataatgttgtgatggtcgtggtggtggtgaagggttgtgttaatatgttgtgcgggttccacggcgttaaaatcgccagtaaaattgagcggtgggacggcggaaacaggtgacggagctgagtttaaacggcggacatgaaatccgaggttcttaagaagtttcggacaaaaaacggtattggccatgcaacggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89218" stop="88327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88918" g_stop="88627" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E222233" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88918" e_stop="88627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATCAATAGCAGCCATTTGTAACGTCATCGAAGATCGAATCAGTTTCGTGGTGGGAACACCGTAGAAAAGCTCCTTAACATCATCGAAATTGATAATGTTGTGATGGTCGTGGTGGTGGTGAAGGGTTGTGTTAATTTGTTGTGCGGGTTCCACGGCGTTAAAATCGCCAGTAAAATTTAGCGGTGGGACGGCGGAAAGAGGTGACGGAGCTGAGTTTAAACGGCGGACATGAAATCCGAGGTTCTTAAGGAGTTTCGGACAAAAAACTTTATTGGCCATGCAACGGTG</genome_strand>
        <mrna_strand>TGGGATCAATAGCAGCCACTTGTAACGTCATCGAAGATCGAATCAGTTTCGTGGTGGGAACACCGTAGAAAAGCTCCTCAACATCATCGAAATTGATAATGTTGTGATGGTCGTGGTGGTGGTGAAGGGTTGTGTTAATATGTTGTGCGGGTTCCACGGCGTTAAAATCGCCAGTAAAATTGAGCGGTGGGACGGCGGAAACAGGTGACGGAGCTGAGTTTAAACGGCGGACATGAAATCCGAGGTTCTTAAGAAGTTTCGGACAAAAAACGGTATTGGCCATGCAACGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700876" ref_strand="+" ref_description="SGN-E700876 [FA14BF07]">
      <seq>aagttttttgtccgaaactccttaagaacctcggatttcatgtccgccgtttaaactcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacaccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88346" stop="89702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88646" g_stop="89199" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89402" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="663" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E700876" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88646" e_stop="89199"/>
          <exon e_start="89295" e_stop="89402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAAC-CCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCA</genome_strand>
        <mrna_strand>AAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACACCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269957" ref_strand="+" ref_description="SGN-E269957 [cLEM-7-F1]">
      <seq>tcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88402" stop="89634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88702" g_stop="89199" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89334" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="538" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E269957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88702" e_stop="89199"/>
          <exon e_start="89295" e_stop="89334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCC</genome_strand>
        <mrna_strand>TCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269698" ref_strand="+" ref_description="SGN-E269698 [cLEM-17-E18]">
      <seq>tcagctccgtcacctctttccgccgtcccaccgctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88402" stop="89466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88702" g_stop="89166" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E269698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88702" e_stop="89166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACG</genome_strand>
        <mrna_strand>TCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269825" ref_strand="+" ref_description="SGN-E269825 [cLEM-17-E20]">
      <seq>cgtcacctgtttccgccgtccgagcgctaaattatactggcgattttaacgccgtggaacccgcacaacacattaacacaacgcttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggagtggaacatgccaccgattatgaatcttgtgaacagagtactgcggcgtttattcaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88409" stop="89466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88709" g_stop="89166" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E269825" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88709" e_stop="89166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACG</genome_strand>
        <mrna_strand>CGTCACCTGTTTCCGCCGTCCGAGCGCTAAATTATACTGGCGATTTTAACGCCGTGGAACCCGCACAACACATTAACACAACGCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGAGTGGAACATGCCACCGATTATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E578020" ref_strand="+" ref_description="SGN-E578020 [LE08CH07]">
      <seq>ctaaattttactggcgattttaacgccgtggaacccgcacaacaaattaacacaacccttcaccaccaccacgaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88435" stop="89862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88735" g_stop="89199" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89562" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="733" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E578020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88735" e_stop="89199"/>
          <exon e_start="89295" e_stop="89562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCAT</genome_strand>
        <mrna_strand>CTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553593" ref_strand="+" ref_description="SGN-E553593 [cTSC-1-J23]">
      <seq>gaccatcacaacattatcaatttcgatgatgttaaggagcttttctacggtgttcccaccacgaaactgattctatcttcgatgacgttacagatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttatggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcgagttttgtggtagcaaaaataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtctcttccccttttcgccgaatctagccctgtttatcacacttgtagcaaaccagatcctctatcggtagaggaagagcgtgatcttctattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88507" stop="90012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88807" g_stop="89199" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89712" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="811" r_length="418" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E553593" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88807" e_stop="89199"/>
          <exon e_start="89295" e_stop="89712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTG</genome_strand>
        <mrna_strand>GACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCTATCTTCGATGACGTTACAGATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTATGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCGAGTTTTGTGGTAGCAAAAATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCTCTTCCCCTTTTCGCCGAATCTAGCCCTGTTTATCACACTTGTAGCAAACCAGATCCTCTATCGGTAGAGGAAGAGCGTGATCTTCTATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E320595" ref_strand="+" ref_description="SGN-E320595 [cTOB-22-P13]">
      <seq>ttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccacagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacattcaagcttacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88559" stop="89985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88859" g_stop="89199" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89685" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="731" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E320595" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88859" e_stop="89199"/>
          <exon e_start="89295" e_stop="89685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGA</genome_strand>
        <mrna_strand>TTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCACAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAAC-ATTCAAGCTTACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316458" ref_strand="+" ref_description="SGN-E316458 [cTOA-25-N18]">
      <seq>ttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaaacattcaagcttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88559" stop="89984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88859" g_stop="89199" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89684" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="731" r_length="390" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E316458" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88859" e_stop="89199"/>
          <exon e_start="89295" e_stop="89684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTG</genome_strand>
        <mrna_strand>TTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAAACATTCAAGCTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316570" ref_strand="+" ref_description="SGN-E316570 [cTOA-25-N17]">
      <seq>ttcccaccacgaaactgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaaaacattcagcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88559" stop="89982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88859" g_stop="89199" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89682" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="729" r_length="388" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E316570" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88859" e_stop="89199"/>
          <exon e_start="89295" e_stop="89682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACT</genome_strand>
        <mrna_strand>TTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAAAACATTCAGCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341758" ref_strand="+" ref_description="SGN-E341758 [cTOF-9-I9]">
      <seq>tgattcgatcttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaaccattggatcaaccaaatcactttccgaattttctgcaagttttgggggagcaaaaattactgctttttggacccccagggtttttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88574" stop="89508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88874" g_stop="89199" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89351" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="383" r_length="57" r_score="0.807"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E341758" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88874" e_stop="89199"/>
          <exon e_start="89295" e_stop="89351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGA</genome_strand>
        <mrna_strand>TGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACCATTGGATCAACCAAATCACTTTCCGAATTTTCT...............................................................................................GCAAGTTTTGGGGGAGCAAAAATTACTGCTTTTTGGACCCCCAGGGTTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340462" ref_strand="+" ref_description="SGN-E340462 [cTOF-1-I12]">
      <seq>ttcgatgacgttacaaatggctgctattgatcccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaagctgcagagaaaatgggagttccaatgggatttaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88584" stop="90059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88884" g_stop="89199" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89759" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="780" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E340462" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88884" e_stop="89199"/>
          <exon e_start="89295" e_stop="89759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTT</genome_strand>
        <mrna_strand>TTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAA-GCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332383" ref_strand="+" ref_description="SGN-E332383 [cTOD-17-K5]">
      <seq>ccatggttgatttgggcatgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88616" stop="90060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88916" g_stop="89199" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89760" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="750" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E332383" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88916" e_stop="89199"/>
          <exon e_start="89295" e_stop="89760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTG</genome_strand>
        <mrna_strand>CCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228198" ref_strand="+" ref_description="SGN-E228198 [cLED-2-A10]">
      <seq>catgtgggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtacccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88632" stop="89636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88932" g_stop="89199" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89336" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="310" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E228198" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88932" e_stop="89199"/>
          <exon e_start="89295" e_stop="89336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCA</genome_strand>
        <mrna_strand>CATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321035" ref_strand="+" ref_description="SGN-E321035 [cTOB-13-F14]">
      <seq>ggtaatgaattctaaacttatggaaatgcctatttttagggaggttattcttgggtttgttaaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88638" stop="89874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88938" g_stop="89199" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89574" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="542" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E321035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88938" e_stop="89199"/>
          <exon e_start="89295" e_stop="89574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATG</genome_strand>
        <mrna_strand>GGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233520" ref_strand="+" ref_description="SGN-E233520 [cLED-9-C22]">
      <seq>taaaaatacattttatgaacatttttgcgccggcaaagacttaacggaagctagacggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88698" stop="89756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88998" g_stop="89199" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89456" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="364" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E233520" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88998" e_stop="89199"/>
          <exon e_start="89295" e_stop="89456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACT</genome_strand>
        <mrna_strand>TAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325014" ref_strand="+" ref_description="SGN-E325014 [cTOC-13-E9]">
      <seq>ggaccgttactaatctatcggattctgggttaaaagccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttttctgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88754" stop="89960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89054" g_stop="89199" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89660" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="516" r_length="370" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E325014" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89054" e_stop="89199"/>
          <exon e_start="89295" e_stop="89660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTA---TTT-TGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATA</genome_strand>
        <mrna_strand>GGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTTTCTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273078" ref_strand="+" ref_description="SGN-E273078 [cLEM-24-C1]">
      <seq>ttaaaagccatgccttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88783" stop="89984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89083" g_stop="89199" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89684" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="508" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E273078" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89083" e_stop="89199"/>
          <exon e_start="89295" e_stop="89684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGCCATG-CTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTG</genome_strand>
        <mrna_strand>TTAAAAGCCATGCCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312163" ref_strand="+" ref_description="SGN-E312163 [cTOA-11-K4]">
      <seq>agccatgcttgattatggggtggaacatgccaccgataatgaatcttgtgaacagagtactgcggcgtttattcaaacgattgaatcaaccaaatcacttcccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88788" stop="90047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89088" g_stop="89199" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89747" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="565" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E312163" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89088" e_stop="89199"/>
          <exon e_start="89295" e_stop="89747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATG</genome_strand>
        <mrna_strand>AGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706624" ref_strand="+" ref_description="SGN-E706624 [FA30BH10]">
      <seq>cccgaatcttctgcaagttttgtggtagcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88995" stop="90537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89188" g_stop="89199" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89295" g_stop="89940" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="658" r_length="646" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90015" g_stop="90237" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="881" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E706624" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89188" e_stop="89199"/>
          <exon e_start="89295" e_stop="89940"/>
          <exon e_start="90015" e_stop="90237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGAATCTTCTGTAAGAATTTCAAATAATATTCTATTTGTGTTTCCAATATTCTTGGATTTATGAATTTCATTTTTTTAAATTTTTCTTTTTTTGGGGTGAAACAGGCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATT</genome_strand>
        <mrna_strand>CCCGAATCTTCT...............................................................................................GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280697" ref_strand="+" ref_description="SGN-E280697 [cLEL-6-O22](-)">
      <seq>acttcatgttccaaacatttctcgcaaatttttctaagtctttcatgagctaattgaagatcacgctcttcctctaccgatagaggctctggtttgctacaagtgtgataaacagggctcgattcggcgaaaaggggaagcgactctcgcttccatggaagattaaatgatggatctttctgttcccatcttaacaaatcgctcattcttttgagaagccttgggccacaaatagcagttatctttgctaccacaaaacttgcctgtttcaccccctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="-" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89857" stop="88983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89557" g_stop="89276" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="-" ref_id="SGN-E280697" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89557" e_stop="89276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCATGTTCCAAACATTTCTCGCAAATTTTTCTAAGTCTTTCATGAGCTAATTGAAGATCACGCTCTTCCTCTACCGATAGAGGCTCTGGTTTGCTACAAGTGTGATAAACAGGGCTCGATTCGGCGAAAAGGGGAAGCGACTCTCGCTTCCATGGAAGATTAAATGATGGATCTTTCTGTTCCCATCTTAACAAATCACTCATTCTTTTGAGAAGCCTTGGGGTACAAATAGCAGTTATCTTTGCTACCACAAAACTTGCCTGTTTCACCCCAAAAAAA</genome_strand>
        <mrna_strand>ACTTCATGTTCCAAACATTTCTCGCAAATTTTTCTAAGTCTTTCATGAGCTAATTGAAGATCACGCTCTTCCTCTACCGATAGAGGCTCTGGTTTGCTACAAGTGTGATAAACAGGGCTCGATTCGGCGAAAAGGGGAAGCGACTCTCGCTTCCATGGAAGATTAAATGATGGATCTTTCTGTTCCCATCTTAACAAATCGCTCATTCTTTTGAGAAGCCTTGGGCCACAAATAGCAGTTATCTTTGCTACCACAAAACTTGCCTGTTTCACCCCCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318716" ref_strand="+" ref_description="SGN-E318716 [cTOB-9-J5]">
      <seq>caagttttgcggtagcaaacataactgctatttgtaccccaaggcttctcaacagaatgagtgatttgttaagatgggaacacaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccacatcgagccctgtttatcacacttgtatcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttacaaaaatttgcgagaaatgttgggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaatccaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgttaggggcgctgatatgtgtagtgaaaaagaattggcttctacattaggattcaactgtccaattcacgacagtattgagcaaacacacgcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="88996" stop="90155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89296" g_stop="89855" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E318716" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89296" e_stop="89855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGC</genome_strand>
        <mrna_strand>CAAGTTTTGCGGTAGCAAACATAACTGCTATTTGTACCCCAAGGCTTCTCAACAGAATGAGTGATTTGTTAAGATGGGAACACAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCACATCGAGCCCTGTTTATCACACTTGTATCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTACAAAAATTTGCGAGAAATGTTGGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATCCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTTAGGGGCGCTGATATGTGTAGTGAAAAAGAATTGGCTTCTACATTAGGATTCAACTGTCCAATTCACGACAGTATTGAGCAAACACACGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347300" ref_strand="+" ref_description="SGN-E347300 [cTOF-33-E13]">
      <seq>gcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccattggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcangaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89010" stop="90409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89310" g_stop="89940" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90109" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="727" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E347300" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89310" e_stop="89940"/>
          <exon e_start="90015" e_stop="90109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCA-TGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTT</genome_strand>
        <mrna_strand>GCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATTGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAN..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347297" ref_strand="+" ref_description="SGN-E347297 [cTOF-33-C13]">
      <seq>gcaaagataactgctatttgtaccccaaggcttctcaaaagaatgagtgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcangaaaacttgctgcaaccaaagctatagatttgggaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89010" stop="90354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89310" g_stop="89940" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90054" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="671" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E347297" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89310" e_stop="89940"/>
          <exon e_start="90015" e_stop="90054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAA</genome_strand>
        <mrna_strand>GCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAN..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272017" ref_strand="+" ref_description="SGN-E272017 [cLEM-8-F5]">
      <seq>tgatttgttaagatgggaacagaaagatccatcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89057" stop="90237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89357" g_stop="89937" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E272017" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89357" e_stop="89937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAAT</genome_strand>
        <mrna_strand>TGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243737" ref_strand="+" ref_description="SGN-E243737 [cLED-35-G24]">
      <seq>atcatttaatcttccatggaagcgagagtcgcttccccttttcgccgaatcgagccctgtttatcacacttgtagcaaaccagagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcagctctgcaattcacgacagcattgagcaaacacacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89087" stop="90151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89387" g_stop="89851" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E243737" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89387" e_stop="89851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGC</genome_strand>
        <mrna_strand>ATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAGCTCTGCAATTCACGACAGCATTGAGCAAACACACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243835" ref_strand="+" ref_description="SGN-E243835 [cLED-35-E3]">
      <seq>ccttttcgccgaatcgagccctgtttatcacacttggagcaaaccacagcctctatcggtagaggaagagcgtgatcttcaattagctcatgaaagacttataaaaatttgcgagaaaggtttggaacatgaagttccatgactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcacagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtcgcgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcctgcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89123" stop="90169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89423" g_stop="89869" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E243835" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89423" e_stop="89869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGC</genome_strand>
        <mrna_strand>CCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGGAGCAAACCACAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTATAAAAATTTGCGAGAAAGGTTTGGAACATGAAGTTCCATGACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCACAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTCGCGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCCTGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233284" ref_strand="+" ref_description="SGN-E233284 [cLED-6-D20]">
      <seq>ttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89200" stop="90424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89500" g_stop="89940" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90124" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="551" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E233284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89500" e_stop="89940"/>
          <exon e_start="90015" e_stop="90124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGA</genome_strand>
        <mrna_strand>TTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236634" ref_strand="+" ref_description="SGN-E236634 [cLED-13-F24]">
      <seq>ttcaattagctcatgaaagacttagaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89200" stop="90238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89500" g_stop="89938" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E236634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89500" e_stop="89938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATC</genome_strand>
        <mrna_strand>TTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377826" ref_strand="+" ref_description="SGN-E377826 [TUS-21-H3]">
      <seq>attagctcatgaaagacttacaaaaatttgcgagaaatgtttggaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcatttaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89204" stop="90515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89504" g_stop="89940" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90215" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="638" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E377826" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89504" e_stop="89940"/>
          <exon e_start="90015" e_stop="90215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAG</genome_strand>
        <mrna_strand>ATTAGCTCATGAAAGACTTACAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCATTTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697916" ref_strand="+" ref_description="SGN-E697916 [FA04CG08]">
      <seq>ccgcattaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcacagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagctgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcacactatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggccattccacagacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89250" stop="90547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89547" g_stop="89940" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90247" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="628" r_length="234" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E697916" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89547" e_stop="89940"/>
          <exon e_start="90015" e_stop="90247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGG-CATTCGACAGACAA</genome_strand>
        <mrna_strand>CCGCATTAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCACAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGCTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCACACTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCCATTCCACAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239731" ref_strand="+" ref_description="SGN-E239731 [cLED-33-K7]">
      <seq>gaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89247" stop="90403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89547" g_stop="89940" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90103" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="483" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E239731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89547" e_stop="89940"/>
          <exon e_start="90015" e_stop="90103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGAT</genome_strand>
        <mrna_strand>GAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232714" ref_strand="+" ref_description="SGN-E232714 [cLED-8-E15]">
      <seq>gaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89247" stop="90189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89547" g_stop="89889" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E232714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89547" e_stop="89889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGA</genome_strand>
        <mrna_strand>GAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244706" ref_strand="+" ref_description="SGN-E244706 [cLED-38-K20]">
      <seq>gaacatgaagttccattactaattgatgcggaagacacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatatgcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcacagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89247" stop="90095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89547" g_stop="89795" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E244706" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89547" e_stop="89795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTG</genome_strand>
        <mrna_strand>GAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATGCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCACAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552817" ref_strand="+" ref_description="SGN-E552817 [cTSB-5-C13]">
      <seq>cacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcattcgacagacaactcatgaggaaggaattgagcaggagattcgaagtggctacttcttaaattcatattcagaatatgaaatctatattagtaagtaagaaataataaacgaggaaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggaggaagtcagtttttatctttgtgtgtgttatgaaaaataaaaaaattgtacatatttattttaggtccactacttgtatctttcttcatgtgctattttttaggttctattatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89282" stop="90952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89582" g_stop="89940" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90255" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="600" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90256" i_stop="90348" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90349" g_stop="90652" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="904" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E552817" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89582" e_stop="89940"/>
          <exon e_start="90015" e_stop="90255"/>
          <exon e_start="90349" e_stop="90652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAGGTAATAATTAAACATAGCACAAAAAAGGAAATGATTAATAACTTTATAATACTCCAAGTTATTAATTCTATTATGGCAATGTGTTGTTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATT</genome_strand>
        <mrna_strand>CACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAG.............................................................................................GAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTTCATGTGCTATTTTTTAGGTTCTATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746668" ref_strand="+" ref_description="SGN-E746668 [GI|58802476]">
      <seq>cacaaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttccggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89282" stop="90396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89582" g_stop="89940" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90096" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="441" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E746668" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89582" e_stop="89940"/>
          <exon e_start="90015" e_stop="90096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTAT</genome_strand>
        <mrna_strand>CACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCCGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706458" ref_strand="+" ref_description="SGN-E706458 [FA30AA11]">
      <seq>caaccattcaacctgcaattgattattttgcgtattcagcagcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcattcgacagacaactcatgaggaaggaattgagcaggagattcgaagtggctacttcttaaattcatattcagaatatgaaatctatattagtaagtaagaaataataaacgaggaaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggaggaagtcagtttttatctttgtgtgtgntatgaaaaataaaaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89284" stop="90883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89584" g_stop="89940" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90255" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="598" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90256" i_stop="90348" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90349" g_stop="90583" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="833" r_length="235" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E706458" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89584" e_stop="89940"/>
          <exon e_start="90015" e_stop="90255"/>
          <exon e_start="90349" e_stop="90583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAGGTAATAATTAAACATAGCACAAAAAAGGAAATGATTAATAACTTTATAATACTCCAAGTTATTAATTCTATTATGGCAATGTGTTGTTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATT</genome_strand>
        <mrna_strand>CAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAG.............................................................................................GAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGNTATGAAAAATAAAAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241601" ref_strand="+" ref_description="SGN-E241601 [cLED-36-K5]">
      <seq>agcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcattcgacagacaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89324" stop="90551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89624" g_stop="89940" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90251" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="554" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E241601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89624" e_stop="89940"/>
          <exon e_start="90015" e_stop="90251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCA</genome_strand>
        <mrna_strand>AGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E230985" ref_strand="+" ref_description="SGN-E230985 [cLED-5-O5]">
      <seq>agcaattaagtatcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcattcgacagacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89324" stop="90548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89624" g_stop="89940" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90248" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="551" r_length="234" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E230985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89624" e_stop="89940"/>
          <exon e_start="90015" e_stop="90248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAAC</genome_strand>
        <mrna_strand>AGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237905" ref_strand="+" ref_description="SGN-E237905 [cLED-18-A19]">
      <seq>ttaagtttcacaaagatgatcagcctttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgctgagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctgtcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89329" stop="90501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89629" g_stop="89940" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90201" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="499" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E237905" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89629" e_stop="89940"/>
          <exon e_start="90015" e_stop="90201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGC</genome_strand>
        <mrna_strand>TTAAGTTTCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCTGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTGTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346790" ref_strand="+" ref_description="SGN-E346790 [cTOF-32-E14]">
      <seq>ttgatattcggaacaattcaagcttacttgaaggacgccaaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcattcgacagacaactcatgaggaaggaattgagcaggagattcgaagtggctacttcttaaattcatattcagaatatgaaatctatattagtaagtaagaaataataaacgaggaaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaaagcacctggatgggtaaaatgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89355" stop="90832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89655" g_stop="89940" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90255" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="527" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90256" i_stop="90348" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90349" g_stop="90532" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="711" r_length="184" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E346790" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89655" e_stop="89940"/>
          <exon e_start="90015" e_stop="90255"/>
          <exon e_start="90349" e_stop="90532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAGGTAATAATTAAACATAGCACAAAAAAGGAAATGATTAATAACTTTATAATACTCCAAGTTATTAATTCTATTATGGCAATGTGTTGTTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATG</genome_strand>
        <mrna_strand>TTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAG.............................................................................................GAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAAGCACCTGGATGGGTAAAATGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238462" ref_strand="+" ref_description="SGN-E238462 [cLED-17-A21]">
      <seq>caaggaacgaatggttattgcgaaaaaggctgcagagaaaatgggagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89393" stop="90377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89693" g_stop="89940" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90077" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="311" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E238462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89693" e_stop="89940"/>
          <exon e_start="90015" e_stop="90077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAAT</genome_strand>
        <mrna_strand>CAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271527" ref_strand="+" ref_description="SGN-E271527 [cLEM-23-A8]">
      <seq>gagttccaatgggatttaagcttgtgaggggcgcttatatgtgtagtgaaaaggaattggcttctacattaggattcaactctccaattcacgacagcattgagcaaacacacgcttgcttcaattcgtgcgcggagtttatgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcattcgacagacaactcatgaggaaggaattgagcaggagattcgaagtggctacttcttaaattcatattcagaatatgaaatctatattagtaagtaagaaataataaacgaggaaacatcgccgactactgtaaataattcaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89437" stop="90776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89737" g_stop="89940" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90255" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="445" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90256" i_stop="90348" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90349" g_stop="90476" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="573" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E271527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89737" e_stop="89940"/>
          <exon e_start="90015" e_stop="90255"/>
          <exon e_start="90349" e_stop="90476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAGGTAATAATTAAACATAGCACAAAAAAGGAAATGATTAATAACTTTATAATACTCCAAGTTATTAATTCTATTATGGCAATGTGTTGTTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGAT</genome_strand>
        <mrna_strand>GAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAG.............................................................................................GAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E712555" ref_strand="+" ref_description="SGN-E712555 [FB05AF12]">
      <seq>atgattgaagagattgctaatggttctggtgcagttgttctcgccactcataacattgaatcaggaaaacttgctgcaaccaaagctatagatttgggaataaaagatgagagacaaaatctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcattcgacagacaactcatgaggaaggaattgagcaggagattcgaagtggctacttcttaaattcatattcagaatatgaaatctatattagtaagtaagaaataataaacgaggaaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggaggaagtcagtttttatctttgtgtgtgttatgaaaaataaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatgtactagttccttaagttggtttttatttggtatcgtgttttagaaatagaaatggaagaaggtattcccagagtggagccaaaatgtcgaaattacaaagtgtgtatcagtttctctctctctatcgagacattatgaaataaatcggatttattggccttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89577" stop="91127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89877" g_stop="89940" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90015" g_stop="90255" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="305" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90256" i_stop="90348" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90349" g_stop="90827" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="784" r_length="479" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E712555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89877" e_stop="89940"/>
          <exon e_start="90015" e_stop="90255"/>
          <exon e_start="90349" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAGGTAACAATCAATTATTCTTGAAATATATAGATTTGTTCGCTATTGTCTAACATGTATATGTATAATATAAATAGGAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAGGTAATAATTAAACATAGCACAAAAAAGGAAATGATTAATAACTTTATAATACTCCAAGTTATTAATTCTATTATGGCAATGTGTTGTTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTA</genome_strand>
        <mrna_strand>ATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG..........................................................................GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAG.............................................................................................GAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227352" ref_strand="+" ref_description="SGN-E227352 [cLEL-30-L23](-)">
      <seq>tctccaatttgctcagctatatggtatggcagatgggctttcatttgggctgagaaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcattcgacagacaactcatgaggaaggaattgagcaggagattcgaagtggctacttcttaaattcatattcagaatatgaaatctatattagtaagtaagaaataataaacgaggaaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggaggaagtcagtttttatctttgtgtgtgttatgaaaaataaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatgtactagttccttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89770" stop="90978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90070" g_stop="90255" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90256" i_stop="90348" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90349" g_stop="90678" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="516" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="532"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E227352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90070" e_stop="90255"/>
          <exon e_start="90349" e_stop="90678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAGGTAATAATTAAACATAGCACAAAAAAGGAAATGATTAATAACTTTATAATACTCCAAGTTATTAATTCTATTATGGCAATGTGTTGTTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAA</genome_strand>
        <mrna_strand>TCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAG.............................................................................................GAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E377347" ref_strand="+" ref_description="SGN-E377347 [TUS-21-E24]">
      <seq>aaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcattcgacagacaactcatgaggaaggaattgagcaggagattcgaagtggctacttcttaaattcatattcagaatatgaaatctatattagtaagtaagaaataataaacgaggaaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggaggaagtcagtttttatctttgtgtgtgttatgaaaaataaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatgtactagttccttaagttggtttttatttggtatcgtgttttagaaatagaaatggaagaaggtattcccagagtggagccaaaatgtcgaaattacaaagtgtgtatcagtttctctctctctatcgagacattatgaaataaatcggatttattggcctttaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89824" stop="91134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90124" g_stop="90255" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90256" i_stop="90348" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90349" g_stop="90833" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="617" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="618" polyA_stop="652"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E377347" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90124" e_stop="90255"/>
          <exon e_start="90349" e_stop="90833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAGGTAATAATTAAACATAGCACAAAAAAGGAAATGATTAATAACTTTATAATACTCCAAGTTATTAATTCTATTATGGCAATGTGTTGTTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTAATTAAC</genome_strand>
        <mrna_strand>AAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAG.............................................................................................GAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTAATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236528" ref_strand="+" ref_description="SGN-E236528 [cLED-13-K7]">
      <seq>aaatgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcattcgacagacaactcatgaggaaggaattgagcaggagattcgaagtggctacttcttaaattcatattcagaatatgaaatctatattagtaagtaagaaataataaacgaggaaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggagggaagtcagtttttatctttgtgtgtgttatgaaaaataaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89824" stop="90937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90124" g_stop="90255" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90256" i_stop="90348" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90349" g_stop="90637" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="422" r_length="290" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E236528" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90124" e_stop="90255"/>
          <exon e_start="90349" e_stop="90637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAGGTAATAATTAAACATAGCACAAAAAAGGAAATGATTAATAACTTTATAATACTCCAAGTTATTAATTCTATTATGGCAATGTGTTGTTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGA-GGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTT</genome_strand>
        <mrna_strand>AAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAG.............................................................................................GAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227570" ref_strand="+" ref_description="SGN-E227570 [cLEL-30-L23](-)">
      <seq>tgcaggatttcaagtaagcaaatatttaccatttggtcctgtagagcagattatgcattaccttatgaggcgtgctgaagaaaacagaggcatgctgtctacatcggcattcgacagacaactcatgaggaaggaattgagcaggagattcgaagtggctacttcttaaattcatattcagaatatgaaatctatattagtaagtaagaaataataaacgaggaaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggaggaagtcagtttttatctttgtgtgtgttatgaaaaataaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatgtactagttccttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89827" stop="90978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90127" g_stop="90255" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90256" i_stop="90348" i_length="93">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90349" g_stop="90678" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="459" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="475"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E227570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90127" e_stop="90255"/>
          <exon e_start="90349" e_stop="90678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAGGTAATAATTAAACATAGCACAAAAAAGGAAATGATTAATAACTTTATAATACTCCAAGTTATTAATTCTATTATGGCAATGTGTTGTTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAA</genome_strand>
        <mrna_strand>TGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAG.............................................................................................GAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353967" ref_strand="+" ref_description="SGN-E353967 [cLHT-6-M21](-)">
      <seq>ggcatgctgtctacatcggcattcgacaggcaactcatgaggaaggaattgagcaggagattcgaagtggctacttcttaaattcatattcagaatatgaaatctatattagtaagtaagaaacaataaacgaggaaacatccccgactattgtaaataattcaatgacgtgagggcaaaaattgatgatgatgatcatagcaacctggattggtaaaatgcatgaggaagaagtcagtttaatctttgtgtgtgttatgaaaaataaaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatgtactagttccttaagttggtttttatttggtatcgtgttttagaaatagaaatggaagaaggtattccccagagtggagccaaaatcttgaaattacaaaagtgtgtatcagtttctctctctccatcgagacattatgaaataaatgggatttattggcctttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="89915" stop="91134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90215" g_stop="90255" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90256" i_stop="90348" i_length="93">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90349" g_stop="90840" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="535" r_length="494" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E353967" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90215" e_stop="90255"/>
          <exon e_start="90349" e_stop="90840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAGGTAATAATTAAACATAGCACAAAAAAGGAAATGATTAATAACTTTATAATACTCCAAGTTATTAATTCTATTATGGCAATGTGTTGTTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAAT-AAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATT-CCCAGAGTGGAGCCAAAATGTCGAAATTACA-AAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTAATTAACATTTTAA</genome_strand>
        <mrna_strand>GGCATGCTGTCTACATCGGCATTCGACAGGCAACTCATGAG.............................................................................................GAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAACAATAAACGAGGAAACATCCCCGACTATTGTAAATAATTCAATGACGTGAGGGCAAAAATTGATGATGATGATCATAGCAACCTGGATTGGTAAAATGCATGAGGAAGAAGTCAG-TTTAATCTTTGTGTGTGTTATGAAAAATAAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCCAGAGTGGAGCCAAAATCTTGAAATTACAAAAGTGTGTATCAGTTTCTCTCTCTCCATCGAGACATTATGAAATAAATGGGATTTATTGGCCTTTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287298" ref_strand="+" ref_description="SGN-E287298 [cLES-15-I14]">
      <seq>tttgcaggaaggaattgagcaggagattcgaagtggctacttcttaaattcatattcagaatatgaaatctatattagtaagtaagaaataataaacgaggaaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggaggaagtcagtttttatctttgtgtgtgttatgaaaaataaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatgtactagttccttaagttggtttttatttggtatcgtgttttagaaatagaaatggaagaaggtattcccagagtggagccaaaatgtcgaaattacaaagtgtgtatcagtttctctctctctatcgagacattatgaaataaatcggatttattggcctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="90042" stop="91134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90342" g_stop="90836" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E287298" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90342" e_stop="90836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTAATTAACATT</genome_strand>
        <mrna_strand>TTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226338" ref_strand="+" ref_description="SGN-E226338 [cLEL-26-J16](-)">
      <seq>ttaaattcatattcagaatatgaaatctatattagtaagtaagaataataaacgaggaaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggaggaagtcagtttttatctttgtgtgtgttatgaaaaataaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatgtactagttccttaagttggtttttatttggtatcgtgttttagaaatagaaatggaagaaggtattcccagagtggagccaaaatgtcgaaattacaaagtgtgtatcagtttctctctctctatcgagacattatgaaataaatcggatttattggcctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="90085" stop="91134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90385" g_stop="90824" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="459"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E226338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90385" e_stop="90824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCT</genome_strand>
        <mrna_strand>TTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAG-AATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228921" ref_strand="+" ref_description="SGN-E228921 [cLEL-29-A7](-)">
      <seq>taaattcatattcagaatatgaaatctatattagtaagtaagaaattataaccgtggaaacatcggcgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggaggaagtcagtttttatctttgtgtgggttatgaaaaataaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatgtactagttccttaagttggtttttatttgggatcgtgttttagaaatagaaatggaagaaggtattcccagagtggagccaaaatgtcgaaattacaaagtgtgtatcagtttctctctctctctcgagacattattaaataaatcggatttattggcctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="90086" stop="91134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90386" g_stop="90827" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="477"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E228921" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90386" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTA</genome_strand>
        <mrna_strand>TAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATTATAACCGTGGAAACATCGGCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGGGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGGATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTCTCGAGACATTATTAAATAAATCGGATTTATTGGCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379594" ref_strand="+" ref_description="SGN-E379594 [TUS-3-L22](-)">
      <seq>gaaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggaggaagtcagtttttatctttgtgtgtgttatgaaaaataaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatgtactagttccttaagttggtttttatttggtatagtgttttagaaatagaaatggaagaaggtattcccagagtggagccaaaatgtcgaagatacaaagtgtgtatcagtttctctctctcgatcgagacattatgaaataaatcggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="90142" stop="91115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90442" g_stop="90815" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E379594" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90442" e_stop="90815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATT</genome_strand>
        <mrna_strand>GAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATAGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAGATACAAAGTGTGTATCAGTTTCTCTCTCTCGATCGAGACATTATGAAATAAATCGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379959" ref_strand="+" ref_description="SGN-E379959 [TUS-3-L22]">
      <seq>aaacatcgccgactactgtaaataattcaatgatgtgagggcaaaaattgatgaggatgatcaaagcaacctggatgggtaaaatgcatgaggaggaagtcagtttttatctttgtgtgtgttatgaaaaataaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatgtactagttccttaagttggtttttatttggtatcgtgttttagaaatagaaatggaagaaggtattcccagagtggagccaaaatgtcgaaattacaaagtgtgtatcagtttctctctctctatcgagacattatgaaataaatcggatttattggcctttaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="90143" stop="91134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90443" g_stop="90840" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E379959" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90443" e_stop="90840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTAATTAACATTTTAA</genome_strand>
        <mrna_strand>AAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209782" ref_strand="+" ref_description="SGN-E209782 [cLEC-52-J1]">
      <seq>actgtgaataattcaatgatgtcagggcaaaaatcgatgaggatgatcacccccaccctggatgggtaaaatgcatgaggaggaagtcagcttttatctttgtgtgtgttatgaaaaataaaaaaattgtacatatttattttaggaccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatggactagttccttaagttggtttttatttggcatcgtgttttagaaatagaaatggaataaggtattcccatagtggagccaaaatgtttaaattacaaagtgcgtatcagttgctctctctctatcgagacattatgaaataaatcggatatattggcctttaattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="90157" stop="91134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90457" g_stop="90837" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E209782" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90457" e_stop="90837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCA-AAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTAATTAACATTT</genome_strand>
        <mrna_strand>ACTGTGAATAATTCAATGATGTCAGGGCAAAAATCGATGAGGATGATCACCCCCACCCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGCTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGACCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGGACTAGTTCCTTAAGTTGGTTTTTATTTGGCATCGTGTTTTAGAAATAGAAATGGAATAAGGTATTCCCATAGTGGAGCCAAAATGTTTAAATTACAAAGTGCGTATCAGTTGCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATATATTGGCCTTTAATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226919" ref_strand="+" ref_description="SGN-E226919 [cLEL-26-J6](-)">
      <seq>aaaataaaaaaattgtacatatttattttaggtccactacttgtatctttctccatgtgctattttttaggttctattatatttactatataatgtactagttccttaagttggtttttatttggtatcgtgttttagaaatagaaatggaagaaggtattcccagagtggagccaaaatgtcgaaattacaaagtgtgtatcagtttctctctctctatcaaaacattatgaaataaatcggatttattggcctttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0096G02-pQd7E/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0096G02.2" temp_strand="+" temp_description="C02SLe0096G02.2  AC215462.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0096G02 sequenced_by:kribb upload_account_name:korea">
        <position start="90270" stop="91134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90570" g_stop="90827" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="259" polyA_stop="274"/>
      <MATCH_line gen_id="C02SLe0096G02.2" gen_strand="+" ref_id="SGN-E226919" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0096G02.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90570" e_stop="90827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTA</genome_strand>
        <mrna_strand>AAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCAAAACATTATGAAATAAATCGGATTTATTGGCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>195</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="671" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="671" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="671" e_stop="1" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="671" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="671" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATTCTTTAGTGGAAGATTACACGAACTTGGGACCGAAGAAGAACCAGCATTACACGCGTCTTAGGTGTTTTGACTTATGGAAACTACATTCTTGGGCTGCAGGGCTGACTGAGTTTCCATTTGGAAGAAATCAAGAGAGCACAAGTGAAGCAATTAATGCATATTATTCAGCAGCATTGATGGGATCCGCATATGGAGATGCAGATCTTGTTTCGCTTGGCTCCACTCTAACAGCCTTTGAAATCCAGTCAGCACAGACTTGGTGGCATGTAAAAAGAGATAACAAAATATATGCACCAAGATTTGTGAAGAAGAATAAGGTTGTTGGTATATTATGGTCTAGAAAAAGAGACAGCATTCTCTGGTTTGCTCCAGCTGAGAGGAAAGACATTAGGCTTGGAATTCAAGTTCTACCAATATTGCCAATCACTGAGGTTGTGTTTTCTGATGTTGATTATGTGAAGGAGCTCGTAAAATGGGCATTCACTAGCGTACCCAAAAACAGAACTGAGGAAGGATGGAAAGGATTTGTTTATGCCTTGGAAGCAATTTATAAGCAGAAGCAAGCTCTAAAAGAAGTGAGGGACCTTAGCAGTCATGATGATGGAAATTCACTCTCAAATCTTTTGTGGTGGATTCATAGCAGAAAATGATCAGCTTTAAACTTGA</gDNA_template>
            <first_frame> V  F  F  S  G  R  L  H  E  L  G  T  E  E  E  P  A  L  H  A  S  *  V  F  *  L  M  E  T  T  F  L  G  C  R  A  D  *  V  S  I  W  K  K  S  R  E  H  K  *  S  N  *  C  I  L  F  S  S  I  D  G  I  R  I  W  R  C  R  S  C  F  A  W  L  H  S  N  S  L  *  N  P  V  S  T  D  L  V  A  C  K  K  R  *  Q  N  I  C  T  K  I  C  E  E  E  *  G  C  W  Y  I  M  V  *  K  K  R  Q  H  S  L  V  C  S  S  *  E  E  R  H  *  A  W  N  S  S  S  T  N  I  A  N  H  *  G  C  V  F  *  C  *  L  C  E  G  A  R  K  M  G  I  H  *  R  T  Q  K  Q  N  *  G  R  M  E  R  I  C  L  C  L  G  S  N  L  *  A  E  A  S  S  K  R  S  E  G  P  *  Q  S  *  *  W  K  F  T  L  K  S  F  V  V  D  S  *  Q  K  M  I  S  F  K  L   </first_frame>
            <second_frame>  Y  S  L  V  E  D  Y  T  N  L  G  P  K  K  N  Q  H  Y  T  R  L  R  C  F  D  L  W  K  L  H  S  W  A  A  G  L  T  E  F  P  F  G  R  N  Q  E  S  T  S  E  A  I  N  A  Y  Y  S  A  A  L  M  G  S  A  Y  G  D  A  D  L  V  S  L  G  S  T  L  T  A  F  E  I  Q  S  A  Q  T  W  W  H  V  K  R  D  N  K  I  Y  A  P  R  F  V  K  K  N  K  V  V  G  I  L  W  S  R  K  R  D  S  I  L  W  F  A  P  A  E  R  K  D  I  R  L  G  I  Q  V  L  P  I  L  P  I  T  E  V  V  F  S  D  V  D  Y  V  K  E  L  V  K  W  A  F  T  S  V  P  K  N  R  T  E  E  G  W  K  G  F  V  Y  A  L  E  A  I  Y  K  Q  K  Q  A  L  K  E  V  R  D  L  S  S  H  D  D  G  N  S  L  S  N  L  L  W  W  I  H  S  R  K  *  S  A  L  N  L  </second_frame>
            <third_frame>   I  L  *  W  K  I  T  R  T  W  D  R  R  R  T  S  I  T  R  V  L  G  V  L  T  Y  G  N  Y  I  L  G  L  Q  G  *  L  S  F  H  L  E  E  I  K  R  A  Q  V  K  Q  L  M  H  I  I  Q  Q  H  *  W  D  P  H  M  E  M  Q  I  L  F  R  L  A  P  L  *  Q  P  L  K  S  S  Q  H  R  L  G  G  M  *  K  E  I  T  K  Y  M  H  Q  D  L  *  R  R  I  R  L  L  V  Y  Y  G  L  E  K  E  T  A  F  S  G  L  L  Q  L  R  G  K  T  L  G  L  E  F  K  F  Y  Q  Y  C  Q  S  L  R  L  C  F  L  M  L  I  M  *  R  S  S  *  N  G  H  S  L  A  Y  P  K  T  E  L  R  K  D  G  K  D  L  F  M  P  W  K  Q  F  I  S  R  S  K  L  *  K  K  *  G  T  L  A  V  M  M  M  E  I  H  S  Q  I  F  C  G  G  F  I  A  E  N  D  Q  L  *  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0096G02.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="670" stop="17"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSLVEDYTNLGPKKNQHYTRLRCFDLWKLHSWAAGLTEFPFGRNQESTSEAINAYYSAALMGSAYGDADLVSLGSTLTAFEIQSAQTWWHVKRDNKIYAPRFVKKNKVVGILWSRKRDSILWFAPAERKDIRLGIQVLPILPITEVVFSDVDYVKELVKWAFTSVPKNRTEEGWKGFVYALEAIYKQKQALKEVRDLSSHDDGNSLSNLLWWIHSRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="1547" PGL_stop="1130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1547" e_stop="1130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="1547" e_stop="1130" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1547" stop="1130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265660" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGCTCTCCTGTGATAGTTCTTTTACTAAGTACACTATCAGACTCCGGAATCGTCAATCGTGGATCCTATATGCGTCTGCACCGATTCATTTGACTAATAATGTATCCACCATTAAGTCTGGTGGGTTCTCAGGTGTTATTCGTATTGCTCTACTGGCTGATTCTGATTCCCAATTTGAGAAAATACTTGATACGTATAGCTCGGCTTATCCCGTGTCTGGAAGTGCCATTTTGGGGTCTTTTGCTCTCAAGTATAAGTGGGATGTGAAGGGTGCGGGGAAGTTGCTAATGCTTGCTCACCCCCTCCATTGTCGACTTCTTTCAAAAGCAGATGCTTCAGTAACTGTGCTGGAGGATGTCAAGTATAGTAGCATGGATGGTGAGCTTGTTGGTGTAATTGGAGATACATGGGATCTT</gDNA_template>
            <first_frame> Q  A  L  L  *  *  F  F  Y  *  V  H  Y  Q  T  P  E  S  S  I  V  D  P  I  C  V  C  T  D  S  F  D  *  *  C  I  H  H  *  V  W  W  V  L  R  C  Y  S  Y  C  S  T  G  *  F  *  F  P  I  *  E  N  T  *  Y  V  *  L  G  L  S  R  V  W  K  C  H  F  G  V  F  C  S  Q  V  *  V  G  C  E  G  C  G  E  V  A  N  A  C  S  P  P  P  L  S  T  S  F  K  S  R  C  F  S  N  C  A  G  G  C  Q  V  *  *  H  G  W  *  A  C  W  C  N  W  R  Y  M  G  S  </first_frame>
            <second_frame>  K  L  S  C  D  S  S  F  T  K  Y  T  I  R  L  R  N  R  Q  S  W  I  L  Y  A  S  A  P  I  H  L  T  N  N  V  S  T  I  K  S  G  G  F  S  G  V  I  R  I  A  L  L  A  D  S  D  S  Q  F  E  K  I  L  D  T  Y  S  S  A  Y  P  V  S  G  S  A  I  L  G  S  F  A  L  K  Y  K  W  D  V  K  G  A  G  K  L  L  M  L  A  H  P  L  H  C  R  L  L  S  K  A  D  A  S  V  T  V  L  E  D  V  K  Y  S  S  M  D  G  E  L  V  G  V  I  G  D  T  W  D  L </second_frame>
            <third_frame>   S  S  P  V  I  V  L  L  L  S  T  L  S  D  S  G  I  V  N  R  G  S  Y  M  R  L  H  R  F  I  *  L  I  M  Y  P  P  L  S  L  V  G  S  Q  V  L  F  V  L  L  Y  W  L  I  L  I  P  N  L  R  K  Y  L  I  R  I  A  R  L  I  P  C  L  E  V  P  F  W  G  L  L  L  S  S  I  S  G  M  *  R  V  R  G  S  C  *  C  L  L  T  P  S  I  V  D  F  F  Q  K  Q  M  L  Q  *  L  C  W  R  M  S  S  I  V  A  W  M  V  S  L  L  V  *  L  E  I  H  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0096G02.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1546" stop="1130"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSCDSSFTKYTIRLRNRQSWILYASAPIHLTNNVSTIKSGGFSGVIRIALLADSDSQFEKILDTYSSAYPVSGSAILGSFALKYKWDVKGAGKLLMLAHPLHCRLLSKADASVTVLEDVKYSSMDGELVGVIGDTWDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="2347" PGL_stop="1719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2347" e_stop="1719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="2347" e_stop="1719" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2347" stop="1719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2347" stop="1725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTGCAGAAATCTTGGACTTTTCAGCAACTATTCTTGACGACTTCATTGACACGAAGATGTCACGTTCTGAATTTCTCACTTATTCAAAGTCAACTAGACAATAGAGAATCTCCAGATTCAGATTTTCTATCTATTCCTAATCCACCTTCTCTTTAAATTAAACCAAGTAGCCAATATATTAAAAAGGGTCTTCTAAAAATCTCTTCTTTAATCATCTTGAATGGGAGCTGGTCCTCCAAAACCTCTGTACAGTGAGTATTCAATCCTCAACAGCATGAAAATGGTGCCACTTTTACTGTTTTATGCATTTTCTGTTTTTGTACAGGGTTATAATGCTGAATTAACCTTGCACCAAAGCACTCAGTTTCTCTTCCCTCAAGGAAAATCTTTAGTCTTGCCTGAACCATCAGATTACTTTTCTAGTCATCTTGTATCTACCCCTTTGCCCACTAATTCATTTTTTCAAAATTTTGTACTCAAGAATGGTGATCAGCCTGAGTATATCCAACCTTATCTTATTCGCTCTGCTAACTCATCCATTTCTATTTCTTATCCATCTCAGAACATTACCTCTGATTTCATTGAACAGATTTTTCGACCCGATTTAACTATATCTGCTTCCAACAA</gDNA_template>
            <first_frame> I  C  R  N  L  G  L  F  S  N  Y  S  *  R  L  H  *  H  E  D  V  T  F  *  I  S  H  L  F  K  V  N  *  T  I  E  N  L  Q  I  Q  I  F  Y  L  F  L  I  H  L  L  F  K  L  N  Q  V  A  N  I  L  K  R  V  F  *  K  S  L  L  *  S  S  *  M  G  A  G  P  P  K  P  L  Y  S  E  Y  S  I  L  N  S  M  K  M  V  P  L  L  L  F  Y  A  F  S  V  F  V  Q  G  Y  N  A  E  L  T  L  H  Q  S  T  Q  F  L  F  P  Q  G  K  S  L  V  L  P  E  P  S  D  Y  F  S  S  H  L  V  S  T  P  L  P  T  N  S  F  F  Q  N  F  V  L  K  N  G  D  Q  P  E  Y  I  Q  P  Y  L  I  R  S  A  N  S  S  I  S  I  S  Y  P  S  Q  N  I  T  S  D  F  I  E  Q  I  F  R  P  D  L  T  I  S  A  S  N   </first_frame>
            <second_frame>  F  A  E  I  L  D  F  S  A  T  I  L  D  D  F  I  D  T  K  M  S  R  S  E  F  L  T  Y  S  K  S  T  R  Q  *  R  I  S  R  F  R  F  S  I  Y  S  *  S  T  F  S  L  N  *  T  K  *  P  I  Y  *  K  G  S  S  K  N  L  F  F  N  H  L  E  W  E  L  V  L  Q  N  L  C  T  V  S  I  Q  S  S  T  A  *  K  W  C  H  F  Y  C  F  M  H  F  L  F  L  Y  R  V  I  M  L  N  *  P  C  T  K  A  L  S  F  S  S  L  K  E  N  L  *  S  C  L  N  H  Q  I  T  F  L  V  I  L  Y  L  P  L  C  P  L  I  H  F  F  K  I  L  Y  S  R  M  V  I  S  L  S  I  S  N  L  I  L  F  A  L  L  T  H  P  F  L  F  L  I  H  L  R  T  L  P  L  I  S  L  N  R  F  F  D  P  I  *  L  Y  L  L  P  T  </second_frame>
            <third_frame>   L  Q  K  S  W  T  F  Q  Q  L  F  L  T  T  S  L  T  R  R  C  H  V  L  N  F  S  L  I  Q  S  Q  L  D  N  R  E  S  P  D  S  D  F  L  S  I  P  N  P  P  S  L  *  I  K  P  S  S  Q  Y  I  K  K  G  L  L  K  I  S  S  L  I  I  L  N  G  S  W  S  S  K  T  S  V  Q  *  V  F  N  P  Q  Q  H  E  N  G  A  T  F  T  V  L  C  I  F  C  F  C  T  G  L  *  C  *  I  N  L  A  P  K  H  S  V  S  L  P  S  R  K  I  F  S  L  A  *  T  I  R  L  L  F  *  S  S  C  I  Y  P  F  A  H  *  F  I  F  S  K  F  C  T  Q  E  W  *  S  A  *  V  Y  P  T  L  S  Y  S  L  C  *  L  I  H  F  Y  F  L  S  I  S  E  H  Y  L  *  F  H  *  T  D  F  S  T  R  F  N  Y  I  C  F  Q  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0096G02.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2125" stop="1721"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGAGPPKPLYSEYSILNSMKMVPLLLFYAFSVFVQGYNAELTLHQSTQFLFPQGKSLVLPEPSDYFSSHLVSTPLPTNSFFQNFVLKNGDQPEYIQPYLIRSANSSISISYPSQNITSDFIEQIFRPDLTISASN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="22809" PGL_stop="21227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22809" e_stop="22294"/>
            <exon e_start="22133" e_stop="21227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.898" acc_prob="0.798" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22809" e_stop="22294" e_length="516"/>
          </exon>
          <intron i_serial="1" don_prob="0.898" acc_prob="0.798">
            <gDNA_intron_boundary i_start="22293" i_stop="22134" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22133" e_stop="21227" e_length="907"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22809" stop="22294"/>
              <exon start="22133" stop="21844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22798" stop="22294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22760" stop="22431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22571" stop="22294"/>
              <exon start="22133" stop="21801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21958" stop="21227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGGTGTAGCAGAGTTGTTTGATAGCTTTAGAAAAGTTATTCTACCAATCGCGACGTTACTGCTTTTACTCAAAATTAGCTACTCTTCATTTGATTCTACCACTGATTCTTTGCTGCAAAATCTTGAATCAAGTCAAAATGGATCACTCCCTCTTGATCAGCCAGAGCAAGTTTCTCCAGGAATTACTAGCGCTAGTCCTAGCACTAACTATTCGGCGAAAACAGGGATAAGGCAGCAAACATGTAATATCTTTGTGGGAAAATGGATACCATATCCAAAGGGACCATACTATACAAATGAAAGTAACTGTGTGATAGATGATCGACAGAATTGTATGAAATATGGAAGACCGGATAGTGATTTCATACACTGGAGATGGAAGCCAAATGATTGTGAGCTTCCACTGTTTGATGCTACTCAATTTCTGCAAATTGTTCGTGGAAAAACTTTGGCTTTTGTTGGAGACTCTCTAGCAAGAAATCAAATGCAGTCACTGGTGTGCATTCTATCTAAT : GCGTCCATTCCTGTAGACGTATCGGAGACTACAGACACAAAATTCAGGCGATGGTTGTATAAAGATTACAACTTTACAATCATGGCCCTCTGGTCTCCGCAGTTAATCAAATCCTATGACTCAGATCCTACTGGGGATCCCTATTACAGTCTCATGAATTTGTATCTTGACAAGGCTGATGATGTCTGGGCAAGTCAGGTTGAGAAAGCTGATATTATCATAATCTCTGGAGGCCAATGGTTCTTTAGGCCATTTTTGTACTACGAAAACGATCAGCTCATTGGATGTCACAAATGCAATCAAAAGAATGTAACAGAACATACTCATTACTATGGATACAGGATGGCGTTTCGTACAGCTTTCAAGACCCTTTTAAACCTGCAGAAATTAAAGGGTCGATTGGTAATGTTAAGGCCATTCTCCCCTGCACATTTTGAGAATGGGGATTGGAATAACGGAGGGAATTGTAATAGAACAAGACCATTCAAGAATGAAGAAATGAAGTTGGATGGATACGAATTGAAGATGTATATGACTCAATTGGAAGAATTTAAGGCAGCAGAAAAAGAAGGTAGAAAAAGGGGTAGTGTCAAATTCAAATTGCTAGATACAACTGAAGCAATGGTAATGAGACCAGATGGACATCCAAATCATTATGGACATTGGCCAAATGAAAAGAAATTGCCTGATTGTGTACATTGGTGTATGCCAGGCCCTGTTGATACTTGGAATGAGCTTTTATTAGCAACTTTAAAGATGGAAGGAGATGAATTATAGAAACAGAATTATGTCTAGAATTTGGTAACAAACATATAATAACTTTTTCAAATGTTTGTGTAATTTGTTTTAGGAAAAAGGGTATAAGTTTTTTGTAAAGAAGTTTTATATCAATATATATTTTTAAGTA</gDNA_template>
            <first_frame> G  G  V  A  E  L  F  D  S  F  R  K  V  I  L  P  I  A  T  L  L  L  L  L  K  I  S  Y  S  S  F  D  S  T  T  D  S  L  L  Q  N  L  E  S  S  Q  N  G  S  L  P  L  D  Q  P  E  Q  V  S  P  G  I  T  S  A  S  P  S  T  N  Y  S  A  K  T  G  I  R  Q  Q  T  C  N  I  F  V  G  K  W  I  P  Y  P  K  G  P  Y  Y  T  N  E  S  N  C  V  I  D  D  R  Q  N  C  M  K  Y  G  R  P  D  S  D  F  I  H  W  R  W  K  P  N  D  C  E  L  P  L  F  D  A  T  Q  F  L  Q  I  V  R  G  K  T  L  A  F  V  G  D  S  L  A  R  N  Q  M  Q  S  L  V  C  I  L  S  N  :  A  S  I  P  V  D  V  S  E  T  T  D  T  K  F  R  R  W  L  Y  K  D  Y  N  F  T  I  M  A  L  W  S  P  Q  L  I  K  S  Y  D  S  D  P  T  G  D  P  Y  Y  S  L  M  N  L  Y  L  D  K  A  D  D  V  W  A  S  Q  V  E  K  A  D  I  I  I  I  S  G  G  Q  W  F  F  R  P  F  L  Y  Y  E  N  D  Q  L  I  G  C  H  K  C  N  Q  K  N  V  T  E  H  T  H  Y  Y  G  Y  R  M  A  F  R  T  A  F  K  T  L  L  N  L  Q  K  L  K  G  R  L  V  M  L  R  P  F  S  P  A  H  F  E  N  G  D  W  N  N  G  G  N  C  N  R  T  R  P  F  K  N  E  E  M  K  L  D  G  Y  E  L  K  M  Y  M  T  Q  L  E  E  F  K  A  A  E  K  E  G  R  K  R  G  S  V  K  F  K  L  L  D  T  T  E  A  M  V  M  R  P  D  G  H  P  N  H  Y  G  H  W  P  N  E  K  K  L  P  D  C  V  H  W  C  M  P  G  P  V  D  T  W  N  E  L  L  L  A  T  L  K  M  E  G  D  E  L  *  K  Q  N  Y  V  *  N  L  V  T  N  I  *  *  L  F  Q  M  F  V  *  F  V  L  G  K  R  V  *  V  F  C  K  E  V  L  Y  Q  Y  I  F  L  S  </first_frame>
            <second_frame>  V  V  *  Q  S  C  L  I  A  L  E  K  L  F  Y  Q  S  R  R  Y  C  F  Y  S  K  L  A  T  L  H  L  I  L  P  L  I  L  C  C  K  I  L  N  Q  V  K  M  D  H  S  L  L  I  S  Q  S  K  F  L  Q  E  L  L  A  L  V  L  A  L  T  I  R  R  K  Q  G  *  G  S  K  H  V  I  S  L  W  E  N  G  Y  H  I  Q  R  D  H  T  I  Q  M  K  V  T  V  *  *  M  I  D  R  I  V  *  N  M  E  D  R  I  V  I  S  Y  T  G  D  G  S  Q  M  I  V  S  F  H  C  L  M  L  L  N  F  C  K  L  F  V  E  K  L  W  L  L  L  E  T  L  *  Q  E  I  K  C  S  H  W  C  A  F  Y  L  M :   R  P  F  L  *  T  Y  R  R  L  Q  T  Q  N  S  G  D  G  C  I  K  I  T  T  L  Q  S  W  P  S  G  L  R  S  *  S  N  P  M  T  Q  I  L  L  G  I  P  I  T  V  S  *  I  C  I  L  T  R  L  M  M  S  G  Q  V  R  L  R  K  L  I  L  S  *  S  L  E  A  N  G  S  L  G  H  F  C  T  T  K  T  I  S  S  L  D  V  T  N  A  I  K  R  M  *  Q  N  I  L  I  T  M  D  T  G  W  R  F  V  Q  L  S  R  P  F  *  T  C  R  N  *  R  V  D  W  *  C  *  G  H  S  P  L  H  I  L  R  M  G  I  G  I  T  E  G  I  V  I  E  Q  D  H  S  R  M  K  K  *  S  W  M  D  T  N  *  R  C  I  *  L  N  W  K  N  L  R  Q  Q  K  K  K  V  E  K  G  V  V  S  N  S  N  C  *  I  Q  L  K  Q  W  *  *  D  Q  M  D  I  Q  I  I  M  D  I  G  Q  M  K  R  N  C  L  I  V  Y  I  G  V  C  Q  A  L  L  I  L  G  M  S  F  Y  *  Q  L  *  R  W  K  E  M  N  Y  R  N  R  I  M  S  R  I  W  *  Q  T  Y  N  N  F  F  K  C  L  C  N  L  F  *  E  K  G  Y  K  F  F  V  K  K  F  Y  I  N  I  Y  F  *  V </second_frame>
            <third_frame>   W  C  S  R  V  V  *  *  L  *  K  S  Y  S  T  N  R  D  V  T  A  F  T  Q  N  *  L  L  F  I  *  F  Y  H  *  F  F  A  A  K  S  *  I  K  S  K  W  I  T  P  S  *  S  A  R  A  S  F  S  R  N  Y  *  R  *  S  *  H  *  L  F  G  E  N  R  D  K  A  A  N  M  *  Y  L  C  G  K  M  D  T  I  S  K  G  T  I  L  Y  K  *  K  *  L  C  D  R  *  S  T  E  L  Y  E  I  W  K  T  G  *  *  F  H  T  L  E  M  E  A  K  *  L  *  A  S  T  V  *  C  Y  S  I  S  A  N  C  S  W  K  N  F  G  F  C  W  R  L  S  S  K  K  S  N  A  V  T  G  V  H  S  I  *   : C  V  H  S  C  R  R  I  G  D  Y  R  H  K  I  Q  A  M  V  V  *  R  L  Q  L  Y  N  H  G  P  L  V  S  A  V  N  Q  I  L  *  L  R  S  Y  W  G  S  L  L  Q  S  H  E  F  V  S  *  Q  G  *  *  C  L  G  K  S  G  *  E  S  *  Y  Y  H  N  L  W  R  P  M  V  L  *  A  I  F  V  L  R  K  R  S  A  H  W  M  S  Q  M  Q  S  K  E  C  N  R  T  Y  S  L  L  W  I  Q  D  G  V  S  Y  S  F  Q  D  P  F  K  P  A  E  I  K  G  S  I  G  N  V  K  A  I  L  P  C  T  F  *  E  W  G  L  E  *  R  R  E  L  *  *  N  K  T  I  Q  E  *  R  N  E  V  G  W  I  R  I  E  D  V  Y  D  S  I  G  R  I  *  G  S  R  K  R  R  *  K  K  G  *  C  Q  I  Q  I  A  R  Y  N  *  S  N  G  N  E  T  R  W  T  S  K  S  L  W  T  L  A  K  *  K  E  I  A  *  L  C  T  L  V  Y  A  R  P  C  *  Y  L  E  *  A  F  I  S  N  F  K  D  G  R  R  *  I  I  E  T  E  L  C  L  E  F  G  N  K  H  I  I  T  F  S  N  V  C  V  I  C  F  R  K  K  G  I  S  F  L  *  R  S  F  I  S  I  Y  I  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0096G02.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22809" stop="22294"/>
                    <exon start="22133" stop="21357"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1290</number_coding_nucleotides>
                  <number_encoded_amino_acids>430</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGVAELFDSFRKVILPIATLLLLLKISYSSFDSTTDSLLQNLESSQNGSLPLDQPEQVSPGITSASPSTNYSAKTGIRQQTCNIFVGKWIPYPKGPYYTNESNCVIDDRQNCMKYGRPDSDFIHWRWKPNDCELPLFDATQFLQIVRGKTLAFVGDSLARNQMQSLVCILSNASIPVDVSETTDTKFRRWLYKDYNFTIMALWSPQLIKSYDSDPTGDPYYSLMNLYLDKADDVWASQVEKADIIIISGGQWFFRPFLYYENDQLIGCHKCNQKNVTEHTHYYGYRMAFRTAFKTLLNLQKLKGRLVMLRPFSPAHFENGDWNNGGNCNRTRPFKNEEMKLDGYELKMYMTQLEEFKAAEKEGRKRGSVKFKLLDTTEAMVMRPDGHPNHYGHWPNEKKLPDCVHWCMPGPVDTWNELLLATLKMEGDEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28235" PGL_stop="26029"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28235" e_stop="28101"/>
            <exon e_start="27020" e_stop="26029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.993"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="28235" e_stop="28101" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28100" i_stop="27021" i_length="1080"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="27020" e_stop="26029" e_length="992"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28235" stop="28101"/>
              <exon start="27020" stop="26365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26959" stop="26060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26605" stop="26029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCCTAATGAGTGTGAGCTGCCAATATTCAACCCGTTTCAGTTTTTGGATTTGGTCAGAAACAAGTCGGTGGCAATTGTGGGTGATTCAGTTGGAAGAAACCAAATGCAGTCTCTGTTATGCCTCTTGTCCCGG : GTTGAATATCCTGTTGATATTTCTGACAATCCAGATCAATCTTTCAAAAAGTACAAATACACAACTTACAACTTCACTCTAGCAATGTATTGGTCACCATTTTTGGTTTCAACAAAAGAAGTAGATGCAGATGGTCCATGCCATACTGGACTCTACAATCTATACCTAGATGAAGCAGATGAGAAATGGACCACCAAAATTGAGGGATATGACTACATTATCTTAAACGCTGGGCACTGGTTTGCGCGGTGCAGCGTCTACTATGTAAACAACCAACGAGTAGGGTGCAGATACTGTGGAATACCAAATGTAACTGAACTTCCATCTACCTATGCCTACCAACGGGCATTCGAAACTACTCTTAAAGCCATCAACAATTTAGACAATTTTAAGGGTGTAGCTATTCTTAGGACATTTGCGCCTTCTCATTATGAAGGCGGGAAATGGAATGAGGGAGGTGATTGTGCAAGGACAAGGCCGTATGGAAGTAATGAGACTTCGTTGGAGGATCAAAGCGTGGAGCAATACAGGATCCAAGTGGAAGAGTTTGAGGTCGCGGAGAAAGAAGGGAAGATGAAAGGGAAGAGATTCAGGTTGATGGATACAACGCGAGCCATGTTGATGAGACCAGATGGTCACCCAAGTAAATATGGGCATTGGCCAAATGAAAATGTGGCAAATGACTGTGTGCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGTCTGATTTCTTGTTTCATATGTTCAAGATGGAGGCCATCAGATCCCTTGAGGAAAATCTTCAATGAGAGAGCAAAATTATACAATGTACTCTGATTTCATTTATATTTAGGATTCACGTCTCAGTCATCTAAAGAGGAACTCGGTTTCTAAGATATATAGTTATGTTGCCGTGAAGATGCAACCATAGCCCTGTTTTAAAAAATGTTGGAAAAAGACGTCCCTTCTTGAATTTTTATAGAACTGTCGATGTTTTACTAAACGCATTTAG</gDNA_template>
            <first_frame> K  P  N  E  C  E  L  P  I  F  N  P  F  Q  F  L  D  L  V  R  N  K  S  V  A  I  V  G  D  S  V  G  R  N  Q  M  Q  S  L  L  C  L  L  S  R  :  V  E  Y  P  V  D  I  S  D  N  P  D  Q  S  F  K  K  Y  K  Y  T  T  Y  N  F  T  L  A  M  Y  W  S  P  F  L  V  S  T  K  E  V  D  A  D  G  P  C  H  T  G  L  Y  N  L  Y  L  D  E  A  D  E  K  W  T  T  K  I  E  G  Y  D  Y  I  I  L  N  A  G  H  W  F  A  R  C  S  V  Y  Y  V  N  N  Q  R  V  G  C  R  Y  C  G  I  P  N  V  T  E  L  P  S  T  Y  A  Y  Q  R  A  F  E  T  T  L  K  A  I  N  N  L  D  N  F  K  G  V  A  I  L  R  T  F  A  P  S  H  Y  E  G  G  K  W  N  E  G  G  D  C  A  R  T  R  P  Y  G  S  N  E  T  S  L  E  D  Q  S  V  E  Q  Y  R  I  Q  V  E  E  F  E  V  A  E  K  E  G  K  M  K  G  K  R  F  R  L  M  D  T  T  R  A  M  L  M  R  P  D  G  H  P  S  K  Y  G  H  W  P  N  E  N  V  A  N  D  C  V  H  W  C  L  P  G  P  I  D  S  W  S  D  F  L  F  H  M  F  K  M  E  A  I  R  S  L  E  E  N  L  Q  *  E  S  K  I  I  Q  C  T  L  I  S  F  I  F  R  I  H  V  S  V  I  *  R  G  T  R  F  L  R  Y  I  V  M  L  P  *  R  C  N  H  S  P  V  L  K  N  V  G  K  R  R  P  F  L  N  F  Y  R  T  V  D  V  L  L  N  A  F   </first_frame>
            <second_frame>  S  L  M  S  V  S  C  Q  Y  S  T  R  F  S  F  W  I  W  S  E  T  S  R  W  Q  L  W  V  I  Q  L  E  E  T  K  C  S  L  C  Y  A  S  C  P  G :   L  N  I  L  L  I  F  L  T  I  Q  I  N  L  S  K  S  T  N  T  Q  L  T  T  S  L  *  Q  C  I  G  H  H  F  W  F  Q  Q  K  K  *  M  Q  M  V  H  A  I  L  D  S  T  I  Y  T  *  M  K  Q  M  R  N  G  P  P  K  L  R  D  M  T  T  L  S  *  T  L  G  T  G  L  R  G  A  A  S  T  M  *  T  T  N  E  *  G  A  D  T  V  E  Y  Q  M  *  L  N  F  H  L  P  M  P  T  N  G  H  S  K  L  L  L  K  P  S  T  I  *  T  I  L  R  V  *  L  F  L  G  H  L  R  L  L  I  M  K  A  G  N  G  M  R  E  V  I  V  Q  G  Q  G  R  M  E  V  M  R  L  R  W  R  I  K  A  W  S  N  T  G  S  K  W  K  S  L  R  S  R  R  K  K  G  R  *  K  G  R  D  S  G  *  W  I  Q  R  E  P  C  *  *  D  Q  M  V  T  Q  V  N  M  G  I  G  Q  M  K  M  W  Q  M  T  V  C  I  G  A  C  L  V  L  L  I  L  G  L  I  S  C  F  I  C  S  R  W  R  P  S  D  P  L  R  K  I  F  N  E  R  A  K  L  Y  N  V  L  *  F  H  L  Y  L  G  F  T  S  Q  S  S  K  E  E  L  G  F  *  D  I  *  L  C  C  R  E  D  A  T  I  A  L  F  *  K  M  L  E  K  D  V  P  S  *  I  F  I  E  L  S  M  F  Y  *  T  H  L  </second_frame>
            <third_frame>   A  *  *  V  *  A  A  N  I  Q  P  V  S  V  F  G  F  G  Q  K  Q  V  G  G  N  C  G  *  F  S  W  K  K  P  N  A  V  S  V  M  P  L  V  P   : G  *  I  S  C  *  Y  F  *  Q  S  R  S  I  F  Q  K  V  Q  I  H  N  L  Q  L  H  S  S  N  V  L  V  T  I  F  G  F  N  K  R  S  R  C  R  W  S  M  P  Y  W  T  L  Q  S  I  P  R  *  S  R  *  E  M  D  H  Q  N  *  G  I  *  L  H  Y  L  K  R  W  A  L  V  C  A  V  Q  R  L  L  C  K  Q  P  T  S  R  V  Q  I  L  W  N  T  K  C  N  *  T  S  I  Y  L  C  L  P  T  G  I  R  N  Y  S  *  S  H  Q  Q  F  R  Q  F  *  G  C  S  Y  S  *  D  I  C  A  F  S  L  *  R  R  E  M  E  *  G  R  *  L  C  K  D  K  A  V  W  K  *  *  D  F  V  G  G  S  K  R  G  A  I  Q  D  P  S  G  R  V  *  G  R  G  E  R  R  E  D  E  R  E  E  I  Q  V  D  G  Y  N  A  S  H  V  D  E  T  R  W  S  P  K  *  I  W  A  L  A  K  *  K  C  G  K  *  L  C  A  L  V  L  A  W  S  Y  *  F  L  V  *  F  L  V  S  Y  V  Q  D  G  G  H  Q  I  P  *  G  K  S  S  M  R  E  Q  N  Y  T  M  Y  S  D  F  I  Y  I  *  D  S  R  L  S  H  L  K  R  N  S  V  S  K  I  Y  S  Y  V  A  V  K  M  Q  P  *  P  C  F  K  K  C  W  K  K  T  S  L  L  E  F  L  *  N  C  R  C  F  T  K  R  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0096G02.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28235" stop="28101"/>
                    <exon start="27020" stop="26232"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPNECELPIFNPFQFLDLVRNKSVAIVGDSVGRNQMQSLLCLLSRVEYPVDISDNPDQSFKKYKYTTYNFTLAMYWSPFLVSTKEVDADGPCHTGLYNLYLDEADEKWTTKIEGYDYIILNAGHWFARCSVYYVNNQRVGCRYCGIPNVTELPSTYAYQRAFETTLKAINNLDNFKGVAILRTFAPSHYEGGKWNEGGDCARTRPYGSNETSLEDQSVEQYRIQVEEFEVAEKEGKMKGKRFRLMDTTRAMLMRPDGHPSKYGHWPNENVANDCVHWCLPGPIDSWSDFLFHMFKMEAIRSLEENLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="30281" PGL_stop="29954"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30281" e_stop="29954"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="30281" e_stop="29954" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30281" stop="29954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301233" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTAAATATGGGCATTGGCCAAATGCCAATGTTGTATTATATAATGACTGTGTTCATTGGTGCTTGCCTGGTCCTATTGATTCTTGGGCTGATATTTTGTTTCATATGTTCAAGATGGAGAGCACGAAATCCCTGGAGGAAAAGCTTGAATGAGAGAGCCAAATCATACAATGTACTCTGATTTTTTTAGTTGCTTCATTTATTTTTAGAATGGTTGTGAATTACAGAGGAACTCTGTTACATGGATCGTTTTGGTTGAGTTGCAAATGTAACTATAGTACTGTTAGAAAAGTTGGGGCAAAAAAAGCCTTGTTGAATTTTTATAGA</gDNA_template>
            <first_frame> K  *  I  W  A  L  A  K  C  Q  C  C  I  I  *  *  L  C  S  L  V  L  A  W  S  Y  *  F  L  G  *  Y  F  V  S  Y  V  Q  D  G  E  H  E  I  P  G  G  K  A  *  M  R  E  P  N  H  T  M  Y  S  D  F  F  S  C  F  I  Y  F  *  N  G  C  E  L  Q  R  N  S  V  T  W  I  V  L  V  E  L  Q  M  *  L  *  Y  C  *  K  S  W  G  K  K  S  L  V  E  F  L  *  </first_frame>
            <second_frame>  S  K  Y  G  H  W  P  N  A  N  V  V  L  Y  N  D  C  V  H  W  C  L  P  G  P  I  D  S  W  A  D  I  L  F  H  M  F  K  M  E  S  T  K  S  L  E  E  K  L  E  *  E  S  Q  I  I  Q  C  T  L  I  F  L  V  A  S  F  I  F  R  M  V  V  N  Y  R  G  T  L  L  H  G  S  F  W  L  S  C  K  C  N  Y  S  T  V  R  K  V  G  A  K  K  A  L  L  N  F  Y  R </second_frame>
            <third_frame>   V  N  M  G  I  G  Q  M  P  M  L  Y  Y  I  M  T  V  F  I  G  A  C  L  V  L  L  I  L  G  L  I  F  C  F  I  C  S  R  W  R  A  R  N  P  W  R  K  S  L  N  E  R  A  K  S  Y  N  V  L  *  F  F  *  L  L  H  L  F  L  E  W  L  *  I  T  E  E  L  C  Y  M  D  R  F  G  *  V  A  N  V  T  I  V  L  L  E  K  L  G  Q  K  K  P  C  *  I  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0096G02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="32804" PGL_stop="30645"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32804" e_stop="32287"/>
            <exon e_start="30922" e_stop="30645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32804" e_stop="32287" e_length="518"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32286" i_stop="30923" i_length="1364"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30922" e_stop="30645" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32804" stop="32287"/>
              <exon start="30922" stop="30645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32738" stop="32287"/>
              <exon start="30922" stop="30765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32351" stop="32287"/>
              <exon start="30922" stop="30660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCATTGAAGAAATTTCCACAAAAAAAAATGGAGCTTCCCTTTGGGAAATACTCCACTTCAACCCAAAGAACCCCAAGAATATTCTTACTTTTAGTTTTAGCAGTTGTCGTTTTGGGTATTATCCCTCTTTATCACCCATTTAATTGGTACCCAGCAGATTTAGCAACCCAACATCCCTCTGAAATTTCACCCAATTACCATGCTGCTGAGGAGCAAAAGATAAAGATTAAAGAGCCGGAGACATGCGATATCTTCACCGGCGAATGGGTCTGGAATCCGGATGCTCCATATTACACGAATATGACCTGTTATGCGATCCATGAACACCAAAATTGTATCAAGTATGGGAGACCCGATACGGATTATTTGAAGTGGAGATGGAAGCCTAATGGGTGTGAGCTACCTATTTTCGACCCGTTTCTGTTTTTAGATTTGGTTAGGAACAAATCGTTGGCACTCGTCGGTGATTCAGTTGGAAGAAATCAAATGCAGTCGTTGATATGCCTATTGGCTCGG : GTGGAATATCCTGTCGATATATCTGATAATCCAGATGAAGCTTTCAAAAAATACAAATACACAACTTACAACTTTACATTAGCAACATATTGGTCACCATTTTTGGTGTCAACAAAAGAAGCTGATGCAGATGGTCCAAGCCATACTGGAGTTTACAATCTTCACCTTGACAAAGCAGATGAGAAATGGACCACTGAAATTGAAAGATATGACTACGTCATCTTAAATGCAGGCCACTGGTTTGCCCGGATCAGTGTATACTTTGAGAACAACCAACG</gDNA_template>
            <first_frame> L  H  *  R  N  F  H  K  K  K  W  S  F  P  L  G  N  T  P  L  Q  P  K  E  P  Q  E  Y  S  Y  F  *  F  *  Q  L  S  F  W  V  L  S  L  F  I  T  H  L  I  G  T  Q  Q  I  *  Q  P  N  I  P  L  K  F  H  P  I  T  M  L  L  R  S  K  R  *  R  L  K  S  R  R  H  A  I  S  S  P  A  N  G  S  G  I  R  M  L  H  I  T  R  I  *  P  V  M  R  S  M  N  T  K  I  V  S  S  M  G  D  P  I  R  I  I  *  S  G  D  G  S  L  M  G  V  S  Y  L  F  S  T  R  F  C  F  *  I  W  L  G  T  N  R  W  H  S  S  V  I  Q  L  E  E  I  K  C  S  R  *  Y  A  Y  W  L  G :   W  N  I  L  S  I  Y  L  I  I  Q  M  K  L  S  K  N  T  N  T  Q  L  T  T  L  H  *  Q  H  I  G  H  H  F  W  C  Q  Q  K  K  L  M  Q  M  V  Q  A  I  L  E  F  T  I  F  T  L  T  K  Q  M  R  N  G  P  L  K  L  K  D  M  T  T  S  S  *  M  Q  A  T  G  L  P  G  S  V  Y  T  L  R  T  T  N  </first_frame>
            <second_frame>  S  I  E  E  I  S  T  K  K  N  G  A  S  L  W  E  I  L  H  F  N  P  K  N  P  K  N  I  L  T  F  S  F  S  S  C  R  F  G  Y  Y  P  S  L  S  P  I  *  L  V  P  S  R  F  S  N  P  T  S  L  *  N  F  T  Q  L  P  C  C  *  G  A  K  D  K  D  *  R  A  G  D  M  R  Y  L  H  R  R  M  G  L  E  S  G  C  S  I  L  H  E  Y  D  L  L  C  D  P  *  T  P  K  L  Y  Q  V  W  E  T  R  Y  G  L  F  E  V  E  M  E  A  *  W  V  *  A  T  Y  F  R  P  V  S  V  F  R  F  G  *  E  Q  I  V  G  T  R  R  *  F  S  W  K  K  S  N  A  V  V  D  M  P  I  G  S   : G  G  I  S  C  R  Y  I  *  *  S  R  *  S  F  Q  K  I  Q  I  H  N  L  Q  L  Y  I  S  N  I  L  V  T  I  F  G  V  N  K  R  S  *  C  R  W  S  K  P  Y  W  S  L  Q  S  S  P  *  Q  S  R  *  E  M  D  H  *  N  *  K  I  *  L  R  H  L  K  C  R  P  L  V  C  P  D  Q  C  I  L  *  E  Q  P  T </second_frame>
            <third_frame>   P  L  K  K  F  P  Q  K  K  M  E  L  P  F  G  K  Y  S  T  S  T  Q  R  T  P  R  I  F  L  L  L  V  L  A  V  V  V  L  G  I  I  P  L  Y  H  P  F  N  W  Y  P  A  D  L  A  T  Q  H  P  S  E  I  S  P  N  Y  H  A  A  E  E  Q  K  I  K  I  K  E  P  E  T  C  D  I  F  T  G  E  W  V  W  N  P  D  A  P  Y  Y  T  N  M  T  C  Y  A  I  H  E  H  Q  N  C  I  K  Y  G  R  P  D  T  D  Y  L  K  W  R  W  K  P  N  G  C  E  L  P  I  F  D  P  F  L  F  L  D  L  V  R  N  K  S  L  A  L  V  G  D  S  V  G  R  N  Q  M  Q  S  L  I  C  L  L  A  R  :  V  E  Y  P  V  D  I  S  D  N  P  D  E  A  F  K  K  Y  K  Y  T  T  Y  N  F  T  L  A  T  Y  W  S  P  F  L  V  S  T  K  E  A  D  A  D  G  P  S  H  T  G  V  Y  N  L  H  L  D  K  A  D  E  K  W  T  T  E  I  E  R  Y  D  Y  V  I  L  N  A  G  H  W  F  A  R  I  S  V  Y  F  E  N  N  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0096G02.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32802" stop="32287"/>
                    <exon start="30922" stop="30647"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLKKFPQKKMELPFGKYSTSTQRTPRIFLLLVLAVVVLGIIPLYHPFNWYPADLATQHPSEISPNYHAAEEQKIKIKEPETCDIFTGEWVWNPDAPYYTNMTCYAIHEHQNCIKYGRPDTDYLKWRWKPNGCELPIFDPFLFLDLVRNKSLALVGDSVGRNQMQSLICLLARVEYPVDISDNPDEAFKKYKYTTYNFTLATYWSPFLVSTKEADADGPSHTGVYNLHLDKADEKWTTEIERYDYVILNAGHWFARISVYFENNQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="42240" PGL_stop="42929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42240" e_stop="42503"/>
            <exon e_start="42919" e_stop="42929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="0.905"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="42240" e_stop="42503" e_length="264"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="42504" i_stop="42918" i_length="415"/>
          </intron>
          <exon e_serial="2" e_score="0.545">
            <gDNA_exon_boundary e_start="42919" e_stop="42929" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42240" stop="42503"/>
              <exon start="42919" stop="42929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGCAGGCACAGGTGTACGGTAGAGCTACAAGTTCTTTGTTGCAGCTATCTGGACGTCAGCATTCATCCGGAGTTTGGTAGGTCCTTATGCCTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGTGGGGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAGACTTTGTATTGGTGCTATTTTGGCCGATATACAATTAATATTTAATGAATTATTTCTTTCAGTTGCTTATCTCTTAAAG : AGAATGAATAC</gDNA_template>
            <first_frame> V  Q  A  Q  V  Y  G  R  A  T  S  S  L  L  Q  L  S  G  R  Q  H  S  S  G  V  W  *  V  L  M  P  S  R  M  L  L  F  Y  I  L  A  *  F  *  S  *  A  S  G  A  C  S  T  S  V  S  F  L  F  W  F  R  L  C  I  G  A  I  L  A  D  I  Q  L  I  F  N  E  L  F  L  S  V  A  Y  L  L  K  :  R  M  N   </first_frame>
            <second_frame>  C  R  H  R  C  T  V  E  L  Q  V  L  C  C  S  Y  L  D  V  S  I  H  P  E  F  G  R  S  L  C  L  R  G  C  Y  C  F  T  F  *  R  S  F  R  V  E  L  V  G  H  V  P  L  A  F  L  S  C  F  G  S  D  F  V  L  V  L  F  W  P  I  Y  N  *  Y  L  M  N  Y  F  F  Q  L  L  I  S  *  R :   E  *  I  </second_frame>
            <third_frame>   A  G  T  G  V  R  *  S  Y  K  F  F  V  A  A  I  W  T  S  A  F  I  R  S  L  V  G  P  Y  A  F  E  D  A  T  V  L  H  S  S  V  V  L  E  L  S  *  W  G  M  F  H  *  R  F  F  P  V  L  V  Q  T  L  Y  W  C  Y  F  G  R  Y  T  I  N  I  *  *  I  I  S  F  S  C  L  S  L  K   : E  N  E  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0096G02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="53085" PGL_stop="54235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53085" e_stop="53135"/>
            <exon e_start="53223" e_stop="53529"/>
            <exon e_start="54199" e_stop="54235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.622"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53085" e_stop="53135" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53136" i_stop="53222" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53223" e_stop="53529" e_length="307"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="53530" i_stop="54198" i_length="669"/>
          </intron>
          <exon e_serial="3" e_score="0.622">
            <gDNA_exon_boundary e_start="54199" e_stop="54235" e_length="37"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53085" stop="53135"/>
              <exon start="53223" stop="53529"/>
              <exon start="54199" stop="54235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53085" stop="53135"/>
              <exon start="53223" stop="53529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53086" stop="53135"/>
              <exon start="53223" stop="53529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308881" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTCCTTTTTAGTCTTTGTCACCCTTGTATGATTCTGCTTATTTTCTTG : GGTGGTTTTAATTAATCAAGAAGAAAATGATGGGGTTTGAGAGATTGATGGTGAATTTGAAGACGAAACTGAGGAGGTCTTTTAAAATGAAGGAATCATACGACAAGATTGAGAAGAGTGAAAGCATGAGAGTGGAGATTAGGAGCAAGAAGGCTCGTAAGCTTATTGAACAGACTCTTAAAATTGCTGATTCCCCCAAATCCCGAAGCTATCCTTTCTAGTAATCTGTTTAGAATGTTGTAATGACAAAAGTAATCCCAACTTTTATAGAAAATCAAATTATATGCACAAGTTTAGTGGAATCTCT : ACAAAAAATAAAAAAGTAGTCTCATTCAGGCTCAGTA</gDNA_template>
            <first_frame> K  F  L  F  S  L  C  H  P  C  M  I  L  L  I  F  L  :  G  G  F  N  *  S  R  R  K  *  W  G  L  R  D  *  W  *  I  *  R  R  N  *  G  G  L  L  K  *  R  N  H  T  T  R  L  R  R  V  K  A  *  E  W  R  L  G  A  R  R  L  V  S  L  L  N  R  L  L  K  L  L  I  P  P  N  P  E  A  I  L  S  S  N  L  F  R  M  L  *  *  Q  K  *  S  Q  L  L  *  K  I  K  L  Y  A  Q  V  *  W  N  L   : Y  K  K  *  K  S  S  L  I  Q  A  Q   </first_frame>
            <second_frame>  N  S  F  L  V  F  V  T  L  V  *  F  C  L  F  S  W :   V  V  L  I  N  Q  E  E  N  D  G  V  *  E  I  D  G  E  F  E  D  E  T  E  E  V  F  *  N  E  G  I  I  R  Q  D  *  E  E  *  K  H  E  S  G  D  *  E  Q  E  G  S  *  A  Y  *  T  D  S  *  N  C  *  F  P  Q  I  P  K  L  S  F  L  V  I  C  L  E  C  C  N  D  K  S  N  P  N  F  Y  R  K  S  N  Y  M  H  K  F  S  G  I  S  :  T  K  N  K  K  V  V  S  F  R  L  S  </second_frame>
            <third_frame>   I  P  F  *  S  L  S  P  L  Y  D  S  A  Y  F  L   : G  W  F  *  L  I  K  K  K  M  M  G  F  E  R  L  M  V  N  L  K  T  K  L  R  R  S  F  K  M  K  E  S  Y  D  K  I  E  K  S  E  S  M  R  V  E  I  R  S  K  K  A  R  K  L  I  E  Q  T  L  K  I  A  D  S  P  K  S  R  S  Y  P  F  *  *  S  V  *  N  V  V  M  T  K  V  I  P  T  F  I  E  N  Q  I  I  C  T  S  L  V  E  S  L :   Q  K  I  K  K  *  S  H  S  G  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0096G02.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53234" stop="53443"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKKKMMGFERLMVNLKTKLRRSFKMKESYDKIEKSESMRVEIRSKKARKLIEQTLKIADSPKSRSYPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="72820" PGL_stop="75875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72820" e_stop="73547"/>
            <exon e_start="74059" e_stop="74367"/>
            <exon e_start="74459" e_stop="74863"/>
            <exon e_start="74974" e_stop="75875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.953" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72820" e_stop="73547" e_length="728"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="73548" i_stop="74058" i_length="511"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74059" e_stop="74367" e_length="309"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="74368" i_stop="74458" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74459" e_stop="74863" e_length="405"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.953">
            <gDNA_intron_boundary i_start="74864" i_stop="74973" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="74974" e_stop="75875" e_length="902"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72820" stop="73547"/>
              <exon start="74059" stop="74102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72822" stop="73538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72845" stop="73547"/>
              <exon start="74059" stop="74161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72854" stop="73432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72855" stop="73349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72868" stop="73450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72914" stop="73547"/>
              <exon start="74059" stop="74278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73388" stop="73547"/>
              <exon start="74059" stop="74367"/>
              <exon start="74459" stop="74547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73411" stop="73547"/>
              <exon start="74059" stop="74367"/>
              <exon start="74459" stop="74765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73522" stop="73547"/>
              <exon start="74059" stop="74367"/>
              <exon start="74459" stop="74745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74071" stop="74367"/>
              <exon start="74459" stop="74744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74071" stop="74367"/>
              <exon start="74459" stop="74727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74131" stop="74367"/>
              <exon start="74459" stop="74863"/>
              <exon start="74974" stop="74986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74215" stop="74367"/>
              <exon start="74459" stop="74619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74225" stop="74367"/>
              <exon start="74459" stop="74863"/>
              <exon start="74974" stop="75077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74609" stop="74863"/>
              <exon start="74974" stop="75395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74629" stop="74863"/>
              <exon start="74974" stop="75277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74634" stop="74863"/>
              <exon start="74974" stop="75154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74647" stop="74863"/>
              <exon start="74974" stop="75289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74659" stop="74863"/>
              <exon start="74974" stop="75244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74706" stop="74863"/>
              <exon start="74974" stop="75411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74706" stop="74863"/>
              <exon start="74974" stop="75411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74706" stop="74863"/>
              <exon start="74974" stop="75240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74751" stop="74863"/>
              <exon start="74974" stop="75395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74770" stop="74863"/>
              <exon start="74974" stop="75490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74770" stop="74863"/>
              <exon start="74974" stop="75490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74771" stop="74863"/>
              <exon start="74974" stop="75224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75104" stop="75726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75107" stop="75858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75107" stop="75858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75107" stop="75610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75152" stop="75858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75168" stop="75774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75176" stop="75858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75324" stop="75875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75380" stop="75873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75380" stop="75873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75457" stop="75858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATTGTGTTCTCATCTCTCTGTGTGTCGCTGTGCAAATGACATAGCACATAATTCTGTTTTCCAACACTTATTGATTATCGTTTTGCTTATCTTTCATTTAAGAGATTATTAACAAATGGCACCGAGCTCCGTTGTTGTTACAATGGAGAATACTAAAAACATTTCATTAGTTGAAGTCAATGATTTGGATTCACCAGCTTTTAGGGATAAAAACAAGGCTGCAAATCCCAAGAGATTTACTAAAGTGTTGTTACTGAAAGCCCAGAGGACACTTGGCTGTATCCCAAAAACATTTGCATCTGTTAAGAAACGGATTGCTTTATCAGATGAAGAGCCAAAATACAGGGGGAAGTTGTACAGATTTATTAGAGCTTTTCTTGCTATATCAGTGGTGGCTTTGTGTATTGAGATTTTTGCTTATTTTAATAAGTGGGAATTGAATCTGGTGAATCCTTGGGAGGTGCAAAGTATTTTGCAATGGACTTATATGGCTTGGATTTCATTTAGAGCTGATTATATTGCTCCTTCCCTTTCAAAACTTACTACATTTTGTATTGTGCTTTTCCTTATTCAATCCATAGATCGACTTGTTCTTTGTCTGGGATGTTTCTGGATGAAATTCAGGAAGATTAAGCCAATTATCAATGAAGATGCATCTGATCTTGAGGATGGATCTTATTTCCCTATGGTTCTTGTACAGATTCCCATGTGCAATGAAAAAGAG : GTTTTTGCCCAATCAATTGGTGCTGTTTGTCAGCTGGATTGGCCAAAAGACCGATTCTTGGTACAAGTATTGGATGATTCAGATGATGAAGTCCTGCAGCAAATGATCAAGAATGAATGTGTATCCTGGAAAGAGAAAGGAGTCAACATTATCTACAGACATCGGTTCATCCGAACTGGTTACAAAGCTGGCAATCTTAAATCTGCAATGACTTGTGACTATGTTCAGGACTATGAATTTGTTGCAATTTTTGACGCGGATTTCCAACCAAATCCTGATTTCCTTAAACTGACTGTTCCTCATTTTAAG : GGAAAACCGGATGTTGGACTTGTTCAAGCACGCTGGACCTTCGTTAATCAGGATGAGAACTTACTTACTAGGCTTCAGAACATTAACTTGTGCTTCCATTTTGAGGTGGAACAACAAGTGAATGGTCACTATCTCAATTTCTTTGGATTCAATGGAACAGCTGGTGTTTGGAGAATTAAGGCTTTGGAGGAGTCTGGCGGATGGTTGGAACGGACAACTGTTGAGGACATGGATATCGCTGTCAGAGCACACTTGTATGGCTGGAAATTTATCTATGTTAATGATGTAAGGGCACTTTGCGAGTTACCAGAATCATATGAGGCTTACAAGAAACAGCAGCACCGTTGGCATTCTGGTCCTATGCAGCTCTTTAGACTATGTCTTCCTGCAATCCTGACTTCCAAG : ATCTCTATCTGGAAGAAGGCGAACATGATATTCCTTTTCTTTCTTCTAAGGAAGCTTGTATTACCCTTTTACTCATTCACATTGTTCTGTATCATACTTCCATTAACAATGTTCATACCAGAAGCCCAGTTGCCCGCTTGGGTTATCTGTTATGTCCCTATAGTCATGTCCATTTTGAACATCCTTCCGGCACCAAAGTCTTTCCCTTTCCTAATGCCATACCTCCTATTCGAGAACACAATGTCGGTGACAAAATTCAATGCCATGGTCTCGGGGCTATTTCAGTTGGGAAGTGCCTATGAATGGGTGGTCACCAAGAAAACAGGCAGATCATCTGAATCAGACTTGCTAGCATTTGCTGAGGAGGAATCAAAGAAAATGAACGAAGAGAAAATATCAAGAAGGTTATCTGAATCTGGTCTAGAACTATACGGAAAACTAAAAGAACATGAACAAGAGATTCCGAAGAAAAAGAAGGCAAACAAAATCTACAGGAAGGAATTAGCGCTTGCTTTTCTTTTGCTGACTGCAGCTGCAAGAAGCCTGTTATCTGCACAAGGCATACATTTCTATTACTTGCTGTTTCAAGGCTTAACTTTTCTTATAGTTGGCTTGGATTTAATTGGAGAACAAGTCAGCTAGCTAAAGCAAAGAGTTTTAATATTTTATTTGGAACATCATCATCTGTTTAGAGACCAAAATTTCCAGTTGAGTAGCAATCAAAACTTGGCTGCAAACTGGGACTTTCACCATAAGAATAGTTACAGGTGAATTTTAAACAATAGCATACTCACATTCATTCATATATACTTTTTTATTTTATTTCTTTTCATTTGTGAAATTTGTAATTGCCTTTACTATATCAAGCAAAATAATGAATTGGAAATATTGTTTGACTTACT</gDNA_template>
            <first_frame> K  N  C  V  L  I  S  L  C  V  A  V  Q  M  T  *  H  I  I  L  F  S  N  T  Y  *  L  S  F  C  L  S  F  I  *  E  I  I  N  K  W  H  R  A  P  L  L  L  Q  W  R  I  L  K  T  F  H  *  L  K  S  M  I  W  I  H  Q  L  L  G  I  K  T  R  L  Q  I  P  R  D  L  L  K  C  C  Y  *  K  P  R  G  H  L  A  V  S  Q  K  H  L  H  L  L  R  N  G  L  L  Y  Q  M  K  S  Q  N  T  G  G  S  C  T  D  L  L  E  L  F  L  L  Y  Q  W  W  L  C  V  L  R  F  L  L  I  L  I  S  G  N  *  I  W  *  I  L  G  R  C  K  V  F  C  N  G  L  I  W  L  G  F  H  L  E  L  I  I  L  L  L  P  F  Q  N  L  L  H  F  V  L  C  F  S  L  F  N  P  *  I  D  L  F  F  V  W  D  V  S  G  *  N  S  G  R  L  S  Q  L  S  M  K  M  H  L  I  L  R  M  D  L  I  S  L  W  F  L  Y  R  F  P  C  A  M  K  K  R :   F  L  P  N  Q  L  V  L  F  V  S  W  I  G  Q  K  T  D  S  W  Y  K  Y  W  M  I  Q  M  M  K  S  C  S  K  *  S  R  M  N  V  Y  P  G  K  R  K  E  S  T  L  S  T  D  I  G  S  S  E  L  V  T  K  L  A  I  L  N  L  Q  *  L  V  T  M  F  R  T  M  N  L  L  Q  F  L  T  R  I  S  N  Q  I  L  I  S  L  N  *  L  F  L  I  L  R :   E  N  R  M  L  D  L  F  K  H  A  G  P  S  L  I  R  M  R  T  Y  L  L  G  F  R  T  L  T  C  A  S  I  L  R  W  N  N  K  *  M  V  T  I  S  I  S  L  D  S  M  E  Q  L  V  F  G  E  L  R  L  W  R  S  L  A  D  G  W  N  G  Q  L  L  R  T  W  I  S  L  S  E  H  T  C  M  A  G  N  L  S  M  L  M  M  *  G  H  F  A  S  Y  Q  N  H  M  R  L  T  R  N  S  S  T  V  G  I  L  V  L  C  S  S  L  D  Y  V  F  L  Q  S  *  L  P  R :   S  L  S  G  R  R  R  T  *  Y  S  F  S  F  F  *  G  S  L  Y  Y  P  F  T  H  S  H  C  S  V  S  Y  F  H  *  Q  C  S  Y  Q  K  P  S  C  P  L  G  L  S  V  M  S  L  *  S  C  P  F  *  T  S  F  R  H  Q  S  L  S  L  S  *  C  H  T  S  Y  S  R  T  Q  C  R  *  Q  N  S  M  P  W  S  R  G  Y  F  S  W  E  V  P  M  N  G  W  S  P  R  K  Q  A  D  H  L  N  Q  T  C  *  H  L  L  R  R  N  Q  R  K  *  T  K  R  K  Y  Q  E  G  Y  L  N  L  V  *  N  Y  T  E  N  *  K  N  M  N  K  R  F  R  R  K  R  R  Q  T  K  S  T  G  R  N  *  R  L  L  F  F  C  *  L  Q  L  Q  E  A  C  Y  L  H  K  A  Y  I  S  I  T  C  C  F  K  A  *  L  F  L  *  L  A  W  I  *  L  E  N  K  S  A  S  *  S  K  E  F  *  Y  F  I  W  N  I  I  I  C  L  E  T  K  I  S  S  *  V  A  I  K  T  W  L  Q  T  G  T  F  T  I  R  I  V  T  G  E  F  *  T  I  A  Y  S  H  S  F  I  Y  T  F  L  F  Y  F  F  S  F  V  K  F  V  I  A  F  T  I  S  S  K  I  M  N  W  K  Y  C  L  T  Y  </first_frame>
            <second_frame>  K  I  V  F  S  S  L  C  V  S  L  C  K  *  H  S  T  *  F  C  F  P  T  L  I  D  Y  R  F  A  Y  L  S  F  K  R  L  L  T  N  G  T  E  L  R  C  C  Y  N  G  E  Y  *  K  H  F  I  S  *  S  Q  *  F  G  F  T  S  F  *  G  *  K  Q  G  C  K  S  Q  E  I  Y  *  S  V  V  T  E  S  P  E  D  T  W  L  Y  P  K  N  I  C  I  C  *  E  T  D  C  F  I  R  *  R  A  K  I  Q  G  E  V  V  Q  I  Y  *  S  F  S  C  Y  I  S  G  G  F  V  Y  *  D  F  C  L  F  *  *  V  G  I  E  S  G  E  S  L  G  G  A  K  Y  F  A  M  D  L  Y  G  L  D  F  I  *  S  *  L  Y  C  S  F  P  F  K  T  Y  Y  I  L  Y  C  A  F  P  Y  S  I  H  R  S  T  C  S  L  S  G  M  F  L  D  E  I  Q  E  D  *  A  N  Y  Q  *  R  C  I  *  S  *  G  W  I  L  F  P  Y  G  S  C  T  D  S  H  V  Q  *  K  R   : G  F  C  P  I  N  W  C  C  L  S  A  G  L  A  K  R  P  I  L  G  T  S  I  G  *  F  R  *  *  S  P  A  A  N  D  Q  E  *  M  C  I  L  E  R  E  R  S  Q  H  Y  L  Q  T  S  V  H  P  N  W  L  Q  S  W  Q  S  *  I  C  N  D  L  *  L  C  S  G  L  *  I  C  C  N  F  *  R  G  F  P  T  K  S  *  F  P  *  T  D  C  S  S  F  *   : G  K  T  G  C  W  T  C  S  S  T  L  D  L  R  *  S  G  *  E  L  T  Y  *  A  S  E  H  *  L  V  L  P  F  *  G  G  T  T  S  E  W  S  L  S  Q  F  L  W  I  Q  W  N  S  W  C  L  E  N  *  G  F  G  G  V  W  R  M  V  G  T  D  N  C  *  G  H  G  Y  R  C  Q  S  T  L  V  W  L  E  I  Y  L  C  *  *  C  K  G  T  L  R  V  T  R  I  I  *  G  L  Q  E  T  A  A  P  L  A  F  W  S  Y  A  A  L  *  T  M  S  S  C  N  P  D  F  Q   : D  L  Y  L  E  E  G  E  H  D  I  P  F  L  S  S  K  E  A  C  I  T  L  L  L  I  H  I  V  L  Y  H  T  S  I  N  N  V  H  T  R  S  P  V  A  R  L  G  Y  L  L  C  P  Y  S  H  V  H  F  E  H  P  S  G  T  K  V  F  P  F  P  N  A  I  P  P  I  R  E  H  N  V  G  D  K  I  Q  C  H  G  L  G  A  I  S  V  G  K  C  L  *  M  G  G  H  Q  E  N  R  Q  I  I  *  I  R  L  A  S  I  C  *  G  G  I  K  E  N  E  R  R  E  N  I  K  K  V  I  *  I  W  S  R  T  I  R  K  T  K  R  T  *  T  R  D  S  E  E  K  E  G  K  Q  N  L  Q  E  G  I  S  A  C  F  S  F  A  D  C  S  C  K  K  P  V  I  C  T  R  H  T  F  L  L  L  A  V  S  R  L  N  F  S  Y  S  W  L  G  F  N  W  R  T  S  Q  L  A  K  A  K  S  F  N  I  L  F  G  T  S  S  S  V  *  R  P  K  F  P  V  E  *  Q  S  K  L  G  C  K  L  G  L  S  P  *  E  *  L  Q  V  N  F  K  Q  *  H  T  H  I  H  S  Y  I  L  F  Y  F  I  S  F  H  L  *  N  L  *  L  P  L  L  Y  Q  A  K  *  *  I  G  N  I  V  *  L  T </second_frame>
            <third_frame>   K  L  C  S  H  L  S  V  C  R  C  A  N  D  I  A  H  N  S  V  F  Q  H  L  L  I  I  V  L  L  I  F  H  L  R  D  Y  *  Q  M  A  P  S  S  V  V  V  T  M  E  N  T  K  N  I  S  L  V  E  V  N  D  L  D  S  P  A  F  R  D  K  N  K  A  A  N  P  K  R  F  T  K  V  L  L  L  K  A  Q  R  T  L  G  C  I  P  K  T  F  A  S  V  K  K  R  I  A  L  S  D  E  E  P  K  Y  R  G  K  L  Y  R  F  I  R  A  F  L  A  I  S  V  V  A  L  C  I  E  I  F  A  Y  F  N  K  W  E  L  N  L  V  N  P  W  E  V  Q  S  I  L  Q  W  T  Y  M  A  W  I  S  F  R  A  D  Y  I  A  P  S  L  S  K  L  T  T  F  C  I  V  L  F  L  I  Q  S  I  D  R  L  V  L  C  L  G  C  F  W  M  K  F  R  K  I  K  P  I  I  N  E  D  A  S  D  L  E  D  G  S  Y  F  P  M  V  L  V  Q  I  P  M  C  N  E  K  E  :  V  F  A  Q  S  I  G  A  V  C  Q  L  D  W  P  K  D  R  F  L  V  Q  V  L  D  D  S  D  D  E  V  L  Q  Q  M  I  K  N  E  C  V  S  W  K  E  K  G  V  N  I  I  Y  R  H  R  F  I  R  T  G  Y  K  A  G  N  L  K  S  A  M  T  C  D  Y  V  Q  D  Y  E  F  V  A  I  F  D  A  D  F  Q  P  N  P  D  F  L  K  L  T  V  P  H  F  K  :  G  K  P  D  V  G  L  V  Q  A  R  W  T  F  V  N  Q  D  E  N  L  L  T  R  L  Q  N  I  N  L  C  F  H  F  E  V  E  Q  Q  V  N  G  H  Y  L  N  F  F  G  F  N  G  T  A  G  V  W  R  I  K  A  L  E  E  S  G  G  W  L  E  R  T  T  V  E  D  M  D  I  A  V  R  A  H  L  Y  G  W  K  F  I  Y  V  N  D  V  R  A  L  C  E  L  P  E  S  Y  E  A  Y  K  K  Q  Q  H  R  W  H  S  G  P  M  Q  L  F  R  L  C  L  P  A  I  L  T  S  K  :  I  S  I  W  K  K  A  N  M  I  F  L  F  F  L  L  R  K  L  V  L  P  F  Y  S  F  T  L  F  C  I  I  L  P  L  T  M  F  I  P  E  A  Q  L  P  A  W  V  I  C  Y  V  P  I  V  M  S  I  L  N  I  L  P  A  P  K  S  F  P  F  L  M  P  Y  L  L  F  E  N  T  M  S  V  T  K  F  N  A  M  V  S  G  L  F  Q  L  G  S  A  Y  E  W  V  V  T  K  K  T  G  R  S  S  E  S  D  L  L  A  F  A  E  E  E  S  K  K  M  N  E  E  K  I  S  R  R  L  S  E  S  G  L  E  L  Y  G  K  L  K  E  H  E  Q  E  I  P  K  K  K  K  A  N  K  I  Y  R  K  E  L  A  L  A  F  L  L  L  T  A  A  A  R  S  L  L  S  A  Q  G  I  H  F  Y  Y  L  L  F  Q  G  L  T  F  L  I  V  G  L  D  L  I  G  E  Q  V  S  *  L  K  Q  R  V  L  I  F  Y  L  E  H  H  H  L  F  R  D  Q  N  F  Q  L  S  S  N  Q  N  L  A  A  N  W  D  F  H  H  K  N  S  Y  R  *  I  L  N  N  S  I  L  T  F  I  H  I  Y  F  F  I  L  F  L  F  I  C  E  I  C  N  C  L  Y  Y  I  K  Q  N  N  E  L  E  I  L  F  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0096G02.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72936" stop="73547"/>
                    <exon start="74059" stop="74367"/>
                    <exon start="74459" stop="74863"/>
                    <exon start="74974" stop="75615"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1965</number_coding_nucleotides>
                  <number_encoded_amino_acids>655</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMAPSSVVVTMENTKNISLVEVNDLDSPAFRDKNKAANPKRFTKVLLLKAQRTLGCIPKTFASVKKRIALSDEEPKYRGKLYRFIRAFLAISVVALCIEIFAYFNKWELNLVNPWEVQSILQWTYMAWISFRADYIAPSLSKLTTFCIVLFLIQSIDRLVLCLGCFWMKFRKIKPIINEDASDLEDGSYFPMVLVQIPMCNEKEVFAQSIGAVCQLDWPKDRFLVQVLDDSDDEVLQQMIKNECVSWKEKGVNIIYRHRFIRTGYKAGNLKSAMTCDYVQDYEFVAIFDADFQPNPDFLKLTVPHFKGKPDVGLVQARWTFVNQDENLLTRLQNINLCFHFEVEQQVNGHYLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLYGWKFIYVNDVRALCELPESYEAYKKQQHRWHSGPMQLFRLCLPAILTSKISIWKKANMIFLFFLLRKLVLPFYSFTLFCIILPLTMFIPEAQLPAWVICYVPIVMSILNILPAPKSFPFLMPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKTGRSSESDLLAFAEEESKKMNEEKISRRLSESGLELYGKLKEHEQEIPKKKKANKIYRKELALAFLLLTAAARSLLSAQGIHFYYLLFQGLTFLIVGLDLIGEQVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="75873" PGL_stop="74084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75873" e_stop="75457"/>
            <exon e_start="74205" e_stop="74084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.581" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="75873" e_stop="75457" e_length="417"/>
          </exon>
          <intron i_serial="1" don_prob="0.581" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75456" i_stop="74206" i_length="1251"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74205" e_stop="74084" e_length="122"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75873" stop="75457"/>
              <exon start="74205" stop="74084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346061" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGTCAAACAATATTTCCAATTCATTATTTTGCTTGATATAGTAAAGGCAATTACAAATTTCACAAATGAAAAGAAATAAAATAAAAAAGTATATATGAATGAATGTGAGTATGCTATTGTTTAAAATTCACCTGTAACTATTCTTATGGTGAAAGTCCCAGTTTGCAGCCAAGTTTTGATTGCTACTCAACTGGAAATTTTGGTCTCTAAACAGATGATGATGTTCCAAATAAAATATTAAAACTCTTTGCTTTAGCTAGCTGACTTGTTCTCCAATTAAATCCAAGCCAACTATAAGAAAAGTTAAGCCTTGAAACAGCAAGTAATAGAAATGTATGCCTTGTGCAGATAACAGGCTTCTTGCAGCTGCAGTCAGCAAAAGAAAAGCAAGCGCTAATTCCTTCCTGTAGATTTT : GTTGACTCCTTTCTCTTTCCAGGATACACATTCATTCTTGATCATTTGCTGCAGGACTTCATCATCTGAATCATCCAATACTTGTACCAAGAATCGGTCTTTTGGCCAATCCAGCTGACAAA</gDNA_template>
            <first_frame> *  V  K  Q  Y  F  Q  F  I  I  L  L  D  I  V  K  A  I  T  N  F  T  N  E  K  K  *  N  K  K  V  Y  M  N  E  C  E  Y  A  I  V  *  N  S  P  V  T  I  L  M  V  K  V  P  V  C  S  Q  V  L  I  A  T  Q  L  E  I  L  V  S  K  Q  M  M  M  F  Q  I  K  Y  *  N  S  L  L  *  L  A  D  L  F  S  N  *  I  Q  A  N  Y  K  K  S  *  A  L  K  Q  Q  V  I  E  M  Y  A  L  C  R  *  Q  A  S  C  S  C  S  Q  Q  K  K  S  K  R  *  F  L  P  V  D  F  :  V  D  S  F  L  F  P  G  Y  T  F  I  L  D  H  L  L  Q  D  F  I  I  *  I  I  Q  Y  L  Y  Q  E  S  V  F  W  P  I  Q  L  T   </first_frame>
            <second_frame>  K  S  N  N  I  S  N  S  L  F  C  L  I  *  *  R  Q  L  Q  I  S  Q  M  K  R  N  K  I  K  K  Y  I  *  M  N  V  S  M  L  L  F  K  I  H  L  *  L  F  L  W  *  K  S  Q  F  A  A  K  F  *  L  L  L  N  W  K  F  W  S  L  N  R  *  *  C  S  K  *  N  I  K  T  L  C  F  S  *  L  T  C  S  P  I  K  S  K  P  T  I  R  K  V  K  P  *  N  S  K  *  *  K  C  M  P  C  A  D  N  R  L  L  A  A  A  V  S  K  R  K  A  S  A  N  S  F  L  *  I  L :   L  T  P  F  S  F  Q  D  T  H  S  F  L  I  I  C  C  R  T  S  S  S  E  S  S  N  T  C  T  K  N  R  S  F  G  Q  S  S  *  Q  </second_frame>
            <third_frame>   S  Q  T  I  F  P  I  H  Y  F  A  *  Y  S  K  G  N  Y  K  F  H  K  *  K  E  I  K  *  K  S  I  Y  E  *  M  *  V  C  Y  C  L  K  F  T  C  N  Y  S  Y  G  E  S  P  S  L  Q  P  S  F  D  C  Y  S  T  G  N  F  G  L  *  T  D  D  D  V  P  N  K  I  L  K  L  F  A  L  A  S  *  L  V  L  Q  L  N  P  S  Q  L  *  E  K  L  S  L  E  T  A  S  N  R  N  V  C  L  V  Q  I  T  G  F  L  Q  L  Q  S  A  K  E  K  Q  A  L  I  P  S  C  R  F   : C  *  L  L  S  L  S  R  I  H  I  H  S  *  S  F  A  A  G  L  H  H  L  N  H  P  I  L  V  P  R  I  G  L  L  A  N  P  A  D  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0096G02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="79281" PGL_stop="78834"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79281" e_stop="78834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="79281" e_stop="78834" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79281" stop="78960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79281" stop="78991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79281" stop="79131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79280" stop="78834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTGCAATTATATAATTCGCAATTGTATAATTCGTTAGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAGACAGAATTATACACTTCTATGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACGCTGGCAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAATCCTAGCAATTTCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  Y  I  I  R  N  C  I  I  R  *  S  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  D  R  I  I  H  F  Y  V  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  *  C  L  L  W  S  T  I  K  S  N  P  S  N  F  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  A  I  I  *  F  A  I  V  *  F  V  S  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  I  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  E  L  Y  T  S  M  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  R  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  I  L  A  I  S  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  V  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  Y  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  R  Q  N  Y  T  L  L  C  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  A  G  K  F  *  L  M  F  A  M  E  H  N  *  I  K  S  *  Q  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0096G02.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79094" stop="78834"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKMFVNCIIKCITRRYIFLHVYIQFSLALYKTETELYTSMYKAREASENGEWRARFLGERRWQILANVCYGAQLNQILAISFNLGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="84804" PGL_stop="87472"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84804" e_stop="85490"/>
            <exon e_start="86065" e_stop="86710"/>
            <exon e_start="86799" e_stop="87039"/>
            <exon e_start="87128" e_stop="87472"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.955" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="84804" e_stop="85490" e_length="687"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.955">
            <gDNA_intron_boundary i_start="85491" i_stop="86064" i_length="574"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="86065" e_stop="86710" e_length="646"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="86711" i_stop="86798" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86799" e_stop="87039" e_length="241"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87040" i_stop="87127" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87128" e_stop="87472" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84804" stop="85490"/>
              <exon start="86065" stop="86710"/>
              <exon start="86799" stop="87039"/>
              <exon start="87128" stop="87472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84810" stop="85249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84819" stop="85408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84819" stop="85393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84819" stop="85323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84819" stop="85282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84828" stop="85220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84894" stop="85490"/>
              <exon start="86065" stop="86286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84894" stop="85490"/>
              <exon start="86065" stop="86271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84897" stop="85463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84897" stop="85455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84897" stop="85427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84897" stop="85423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84899" stop="85380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84899" stop="85373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84900" stop="85323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84903" stop="85483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84903" stop="85418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84905" stop="85490"/>
              <exon start="86065" stop="86182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84909" stop="85477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84910" stop="85490"/>
              <exon start="86065" stop="86100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84910" stop="85237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84914" stop="85447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84917" stop="85490"/>
              <exon start="86065" stop="86364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84925" stop="85324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84929" stop="85394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84938" stop="85490"/>
              <exon start="86065" stop="86381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85012" stop="85490"/>
              <exon start="86065" stop="86326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85012" stop="85490"/>
              <exon start="86065" stop="86234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85012" stop="85490"/>
              <exon start="86065" stop="86226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85043" stop="85490"/>
              <exon start="86065" stop="86124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85045" stop="85490"/>
              <exon start="86065" stop="86229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85098" stop="85490"/>
              <exon start="86065" stop="86232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85186" stop="85490"/>
              <exon start="86065" stop="86301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85208" stop="85490"/>
              <exon start="86065" stop="86667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85217" stop="85490"/>
              <exon start="86065" stop="86671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85370" stop="85490"/>
              <exon start="86065" stop="86710"/>
              <exon start="86799" stop="86813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85370" stop="85490"/>
              <exon start="86065" stop="86564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85370" stop="85490"/>
              <exon start="86065" stop="86348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85373" stop="85490"/>
              <exon start="86065" stop="86217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86109" stop="86710"/>
              <exon start="86799" stop="87025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86135" stop="86573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86147" stop="86642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86187" stop="86710"/>
              <exon start="86799" stop="87023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86270" stop="86710"/>
              <exon start="86799" stop="86804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86272" stop="86470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86273" stop="86710"/>
              <exon start="86799" stop="86967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86309" stop="86710"/>
              <exon start="86799" stop="87039"/>
              <exon start="87128" stop="87242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86461" stop="86710"/>
              <exon start="86799" stop="87039"/>
              <exon start="87128" stop="87465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554223" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86463" stop="86710"/>
              <exon start="86799" stop="86855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86547" stop="86710"/>
              <exon start="86799" stop="87039"/>
              <exon start="87128" stop="87462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86816" stop="87039"/>
              <exon start="87128" stop="87460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253926" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACCAAACTTGACTTTGACCAAGTGAATCTCTATAAATATCATGCAACTTTTCAAATGTTACACATATTTTAGAATTTAGGCAGAAACAAAAAGAATTCATATTTTGTTAATTTTCATTTCAATTTCATGGCAAACAAAGTCGTATGTCCAAAGGTTTTTCGTGACCTCCGACGATTCGCTCGATGTCTAAACACAGCTCCGACTGTCCCACCTATGAATTTCACCGGCAACTATGGTTCTACGAACGTAACAATACCGACGTTACAACCTACGGACCAAATATTAGTCAATCCTGAGAAAAAAGTACTCAATTTTGATGATGTTAAAGAGTTGTTTACGGGTGTATCCACCTCGAAGTTGATTAGATCATCGTTAACACTTCAAATGGCATCGATTGAGTCTATGGTTGACCTAGGTATTTGGGTAATGAATTCGAAATTCATGCGTATGCCAGTATTTAAGGAGGTGATACTAGGGTTTGTTAAAAGGACATTTTATGAACATTTTTGTGCTGGAAAAGACTTAATTGAAGTAGGAAAGACGGTTAGTAAGTTGTCGAGCCTTGATTTAAAAGGCATGCTTGATTATGGTGTGGAACATGCAATGGATAATGAGTCTTGTGATCGAAGTATGAATGTTTTTCTTCAGACAGCCGAATTAACCAAGTCTCTTCCATCCTCATCT : GTCAGTTTTGTGGTAGTAAAAATAACTGCAATTTGTACACCAAAGTTGCTCAAAAGAATGAGTGATTTACTGAGATGGGAACAGAAGGATCCTTCATTCAATCTTCCATGGAAGCAAAAGACGCTTCCACTTTTCGCCGAATCGAGTCCTTTTTATCACACGTTGAAAAGACCAGAACCTCTAACAATTGAAGAAGAGCGTGATCTACAATTAGGTCGTGATAGACTTGAGAAAATTTGCAAGAAATGCCTGGAACTTGATGTTGAGTTACTCATTGATGCTGAAGATACAGCTATTCAACCAGCGATTGATTACTTAGCATATTCAGCGGCAATTAAGTATCACAAAGAGGATCATCCTTTGTTATTTGGAACAATTCAAGCTTACTTAAAAGACTCAAAAGAACGTATGATAATCGCTAAAAAGGCAGCAGAGAAAATGGGAGTTCCAATGGGGTTTAAGCTTGTAAGAGGTGCTTATATGTCAAGTGAAAATCAATTGGCTTCAAGTTTAGGTTTTCAATCTCCAATTCACGATAGCATTGAATATACACATAATTGCTACAATTCTTGTGCTGAATTTATGTTTGATGAAATTGCTAATGGTTCAGGAGCTGTTGTTCTTGCTACTCATAATATTGAGTCAG : GAAAACTTGCTGCATCCAGGGCGATAGATTTAGGGATTAGAAAGGATAGTAAAAAGCTCCAATTTGCTCAGCTATATGGTATGGCAGAAGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTGAGTAAATATTTACCATTTGGACCTGTAGAGCAAGTTATGCCTTACCTTATTAGAAGAGCTGAAGAAAATAGAGGTCTTTTGTCTACATCTGCCTTCGATAGACAACTCATGAG : GAAGGAGTTAATCAGAAGATTTGATGTGGCAACTGCATAAATCTTGAGAACTATGGTAGTGTATATTAGATATAGGTGATATTACTACGAATAAATCGAACGTGCTTTCAAGTATTTGTTGAAAGTTTTTAGGTACGAATGCTGAGAGAAGTTAAAGGGACAAGCAATGAAGGTCTAATTAACGTAAAATTGTTTGGAAATAGACTTGTTGCAACAAAAAAAAATCCTATCAATGTACTATTAATTTTCTTTTTATCTCTTTCTTGTATTAGTATGGAAGTTTATTCCAACTTTTGTAATTGGTTTTTTTATAAATACAAATTAAAGTTGTCGATATTGATGAAA</gDNA_template>
            <first_frame> Q  T  K  L  D  F  D  Q  V  N  L  Y  K  Y  H  A  T  F  Q  M  L  H  I  F  *  N  L  G  R  N  K  K  N  S  Y  F  V  N  F  H  F  N  F  M  A  N  K  V  V  C  P  K  V  F  R  D  L  R  R  F  A  R  C  L  N  T  A  P  T  V  P  P  M  N  F  T  G  N  Y  G  S  T  N  V  T  I  P  T  L  Q  P  T  D  Q  I  L  V  N  P  E  K  K  V  L  N  F  D  D  V  K  E  L  F  T  G  V  S  T  S  K  L  I  R  S  S  L  T  L  Q  M  A  S  I  E  S  M  V  D  L  G  I  W  V  M  N  S  K  F  M  R  M  P  V  F  K  E  V  I  L  G  F  V  K  R  T  F  Y  E  H  F  C  A  G  K  D  L  I  E  V  G  K  T  V  S  K  L  S  S  L  D  L  K  G  M  L  D  Y  G  V  E  H  A  M  D  N  E  S  C  D  R  S  M  N  V  F  L  Q  T  A  E  L  T  K  S  L  P  S  S  S  :  V  S  F  V  V  V  K  I  T  A  I  C  T  P  K  L  L  K  R  M  S  D  L  L  R  W  E  Q  K  D  P  S  F  N  L  P  W  K  Q  K  T  L  P  L  F  A  E  S  S  P  F  Y  H  T  L  K  R  P  E  P  L  T  I  E  E  E  R  D  L  Q  L  G  R  D  R  L  E  K  I  C  K  K  C  L  E  L  D  V  E  L  L  I  D  A  E  D  T  A  I  Q  P  A  I  D  Y  L  A  Y  S  A  A  I  K  Y  H  K  E  D  H  P  L  L  F  G  T  I  Q  A  Y  L  K  D  S  K  E  R  M  I  I  A  K  K  A  A  E  K  M  G  V  P  M  G  F  K  L  V  R  G  A  Y  M  S  S  E  N  Q  L  A  S  S  L  G  F  Q  S  P  I  H  D  S  I  E  Y  T  H  N  C  Y  N  S  C  A  E  F  M  F  D  E  I  A  N  G  S  G  A  V  V  L  A  T  H  N  I  E  S   : G  K  L  A  A  S  R  A  I  D  L  G  I  R  K  D  S  K  K  L  Q  F  A  Q  L  Y  G  M  A  E  G  L  S  F  G  L  R  N  A  G  F  Q  V  S  K  Y  L  P  F  G  P  V  E  Q  V  M  P  Y  L  I  R  R  A  E  E  N  R  G  L  L  S  T  S  A  F  D  R  Q  L  M  R :   K  E  L  I  R  R  F  D  V  A  T  A  *  I  L  R  T  M  V  V  Y  I  R  Y  R  *  Y  Y  Y  E  *  I  E  R  A  F  K  Y  L  L  K  V  F  R  Y  E  C  *  E  K  L  K  G  Q  A  M  K  V  *  L  T  *  N  C  L  E  I  D  L  L  Q  Q  K  K  I  L  S  M  Y  Y  *  F  S  F  Y  L  F  L  V  L  V  W  K  F  I  P  T  F  V  I  G  F  F  I  N  T  N  *  S  C  R  Y  *  *   </first_frame>
            <second_frame>  K  P  N  L  T  L  T  K  *  I  S  I  N  I  M  Q  L  F  K  C  Y  T  Y  F  R  I  *  A  E  T  K  R  I  H  I  L  L  I  F  I  S  I  S  W  Q  T  K  S  Y  V  Q  R  F  F  V  T  S  D  D  S  L  D  V  *  T  Q  L  R  L  S  H  L  *  I  S  P  A  T  M  V  L  R  T  *  Q  Y  R  R  Y  N  L  R  T  K  Y  *  S  I  L  R  K  K  Y  S  I  L  M  M  L  K  S  C  L  R  V  Y  P  P  R  S  *  L  D  H  R  *  H  F  K  W  H  R  L  S  L  W  L  T  *  V  F  G  *  *  I  R  N  S  C  V  C  Q  Y  L  R  R  *  Y  *  G  L  L  K  G  H  F  M  N  I  F  V  L  E  K  T  *  L  K  *  E  R  R  L  V  S  C  R  A  L  I  *  K  A  C  L  I  M  V  W  N  M  Q  W  I  M  S  L  V  I  E  V  *  M  F  F  F  R  Q  P  N  *  P  S  L  F  H  P  H  L :   S  V  L  W  *  *  K  *  L  Q  F  V  H  Q  S  C  S  K  E  *  V  I  Y  *  D  G  N  R  R  I  L  H  S  I  F  H  G  S  K  R  R  F  H  F  S  P  N  R  V  L  F  I  T  R  *  K  D  Q  N  L  *  Q  L  K  K  S  V  I  Y  N  *  V  V  I  D  L  R  K  F  A  R  N  A  W  N  L  M  L  S  Y  S  L  M  L  K  I  Q  L  F  N  Q  R  L  I  T  *  H  I  Q  R  Q  L  S  I  T  K  R  I  I  L  C  Y  L  E  Q  F  K  L  T  *  K  T  Q  K  N  V  *  *  S  L  K  R  Q  Q  R  K  W  E  F  Q  W  G  L  S  L  *  E  V  L  I  C  Q  V  K  I  N  W  L  Q  V  *  V  F  N  L  Q  F  T  I  A  L  N  I  H  I  I  A  T  I  L  V  L  N  L  C  L  M  K  L  L  M  V  Q  E  L  L  F  L  L  L  I  I  L  S  Q  :  E  N  L  L  H  P  G  R  *  I  *  G  L  E  R  I  V  K  S  S  N  L  L  S  Y  M  V  W  Q  K  G  F  H  L  G  *  E  M  Q  D  F  K  *  V  N  I  Y  H  L  D  L  *  S  K  L  C  L  T  L  L  E  E  L  K  K  I  E  V  F  C  L  H  L  P  S  I  D  N  S  *   : G  R  S  *  S  E  D  L  M  W  Q  L  H  K  S  *  E  L  W  *  C  I  L  D  I  G  D  I  T  T  N  K  S  N  V  L  S  S  I  C  *  K  F  L  G  T  N  A  E  R  S  *  R  D  K  Q  *  R  S  N  *  R  K  I  V  W  K  *  T  C  C  N  K  K  K  S  Y  Q  C  T  I  N  F  L  F  I  S  F  L  Y  *  Y  G  S  L  F  Q  L  L  *  L  V  F  L  *  I  Q  I  K  V  V  D  I  D  E  </second_frame>
            <third_frame>   N  Q  T  *  L  *  P  S  E  S  L  *  I  S  C  N  F  S  N  V  T  H  I  L  E  F  R  Q  K  Q  K  E  F  I  F  C  *  F  S  F  Q  F  H  G  K  Q  S  R  M  S  K  G  F  S  *  P  P  T  I  R  S  M  S  K  H  S  S  D  C  P  T  Y  E  F  H  R  Q  L  W  F  Y  E  R  N  N  T  D  V  T  T  Y  G  P  N  I  S  Q  S  *  E  K  S  T  Q  F  *  *  C  *  R  V  V  Y  G  C  I  H  L  E  V  D  *  I  I  V  N  T  S  N  G  I  D  *  V  Y  G  *  P  R  Y  L  G  N  E  F  E  I  H  A  Y  A  S  I  *  G  G  D  T  R  V  C  *  K  D  I  L  *  T  F  L  C  W  K  R  L  N  *  S  R  K  D  G  *  *  V  V  E  P  *  F  K  R  H  A  *  L  W  C  G  T  C  N  G  *  *  V  L  *  S  K  Y  E  C  F  S  S  D  S  R  I  N  Q  V  S  S  I  L  I   : C  Q  F  C  G  S  K  N  N  C  N  L  Y  T  K  V  A  Q  K  N  E  *  F  T  E  M  G  T  E  G  S  F  I  Q  S  S  M  E  A  K  D  A  S  T  F  R  R  I  E  S  F  L  S  H  V  E  K  T  R  T  S  N  N  *  R  R  A  *  S  T  I  R  S  *  *  T  *  E  N  L  Q  E  M  P  G  T  *  C  *  V  T  H  *  C  *  R  Y  S  Y  S  T  S  D  *  L  L  S  I  F  S  G  N  *  V  S  Q  R  G  S  S  F  V  I  W  N  N  S  S  L  L  K  R  L  K  R  T  Y  D  N  R  *  K  G  S  R  E  N  G  S  S  N  G  V  *  A  C  K  R  C  L  Y  V  K  *  K  S  I  G  F  K  F  R  F  S  I  S  N  S  R  *  H  *  I  Y  T  *  L  L  Q  F  L  C  *  I  Y  V  *  *  N  C  *  W  F  R  S  C  C  S  C  Y  S  *  Y  *  V  R :   K  T  C  C  I  Q  G  D  R  F  R  D  *  K  G  *  *  K  A  P  I  C  S  A  I  W  Y  G  R  R  A  F  I  W  A  E  K  C  R  I  S  S  E  *  I  F  T  I  W  T  C  R  A  S  Y  A  L  P  Y  *  K  S  *  R  K  *  R  S  F  V  Y  I  C  L  R  *  T  T  H  E  :  E  G  V  N  Q  K  I  *  C  G  N  C  I  N  L  E  N  Y  G  S  V  Y  *  I  *  V  I  L  L  R  I  N  R  T  C  F  Q  V  F  V  E  S  F  *  V  R  M  L  R  E  V  K  G  T  S  N  E  G  L  I  N  V  K  L  F  G  N  R  L  V  A  T  K  K  N  P  I  N  V  L  L  I  F  F  L  S  L  S  C  I  S  M  E  V  Y  S  N  F  C  N  W  F  F  Y  K  Y  K  L  K  L  S  I  L  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0096G02.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84879" stop="85490"/>
                    <exon start="86065" stop="86710"/>
                    <exon start="86799" stop="87039"/>
                    <exon start="87128" stop="87167"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1536</number_coding_nucleotides>
                  <number_encoded_amino_acids>512</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLGRNKKNSYFVNFHFNFMANKVVCPKVFRDLRRFARCLNTAPTVPPMNFTGNYGSTNVTIPTLQPTDQILVNPEKKVLNFDDVKELFTGVSTSKLIRSSLTLQMASIESMVDLGIWVMNSKFMRMPVFKEVILGFVKRTFYEHFCAGKDLIEVGKTVSKLSSLDLKGMLDYGVEHAMDNESCDRSMNVFLQTAELTKSLPSSSVSFVVVKITAICTPKLLKRMSDLLRWEQKDPSFNLPWKQKTLPLFAESSPFYHTLKRPEPLTIEEERDLQLGRDRLEKICKKCLELDVELLIDAEDTAIQPAIDYLAYSAAIKYHKEDHPLLFGTIQAYLKDSKERMIIAKKAAEKMGVPMGFKLVRGAYMSSENQLASSLGFQSPIHDSIEYTHNCYNSCAEFMFDEIANGSGAVVLATHNIESGKLAASRAIDLGIRKDSKKLQFAQLYGMAEGLSFGLRNAGFQVSKYLPFGPVEQVMPYLIRRAEENRGLLSTSAFDRQLMRKELIRRFDVATA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0096G02.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87260" stop="87472"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRMLREVKGTSNEGLINVKLFGNRLVATKKNPINVLLIFFLSLSCISMEVYSNFCNWFFYKYKLKLSILMK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="88567" PGL_stop="90841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88567" e_stop="89199"/>
            <exon e_start="89295" e_stop="89940"/>
            <exon e_start="90015" e_stop="90255"/>
            <exon e_start="90349" e_stop="90841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88567" e_stop="89199" e_length="633"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89200" i_stop="89294" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89295" e_stop="89940" e_length="646"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="89941" i_stop="90014" i_length="74"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90015" e_stop="90255" e_length="241"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90256" i_stop="90348" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90349" e_stop="90841" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88567" stop="89189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88572" stop="89106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88573" stop="89026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88575" stop="89132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88576" stop="89136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88576" stop="89103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88577" stop="89177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88578" stop="89119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88578" stop="89118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358405" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88580" stop="89199"/>
              <exon start="89295" stop="89940"/>
              <exon start="90015" stop="90255"/>
              <exon start="90349" stop="90841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88581" stop="89199"/>
              <exon start="89295" stop="89425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88584" stop="89023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88585" stop="89128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88586" stop="89103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88587" stop="89199"/>
              <exon start="89295" stop="89459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88588" stop="89199"/>
              <exon start="89295" stop="89327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88588" stop="89113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88590" stop="89199"/>
              <exon start="89295" stop="89303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88592" stop="89199"/>
              <exon start="89295" stop="89374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88602" stop="89179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88616" stop="89199"/>
              <exon start="89295" stop="89614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88619" stop="88781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88646" stop="89199"/>
              <exon start="89295" stop="89402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88702" stop="89199"/>
              <exon start="89295" stop="89334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88702" stop="89166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88709" stop="89166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88735" stop="89199"/>
              <exon start="89295" stop="89562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88807" stop="89199"/>
              <exon start="89295" stop="89712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88859" stop="89199"/>
              <exon start="89295" stop="89685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88859" stop="89199"/>
              <exon start="89295" stop="89684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88859" stop="89199"/>
              <exon start="89295" stop="89682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88874" stop="89199"/>
              <exon start="89295" stop="89351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88884" stop="89199"/>
              <exon start="89295" stop="89759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88916" stop="89199"/>
              <exon start="89295" stop="89760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88932" stop="89199"/>
              <exon start="89295" stop="89336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88938" stop="89199"/>
              <exon start="89295" stop="89574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88998" stop="89199"/>
              <exon start="89295" stop="89456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89054" stop="89199"/>
              <exon start="89295" stop="89660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89083" stop="89199"/>
              <exon start="89295" stop="89684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89088" stop="89199"/>
              <exon start="89295" stop="89747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89188" stop="89199"/>
              <exon start="89295" stop="89940"/>
              <exon start="90015" stop="90237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89296" stop="89855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89310" stop="89940"/>
              <exon start="90015" stop="90109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89310" stop="89940"/>
              <exon start="90015" stop="90054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89357" stop="89937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89387" stop="89851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89423" stop="89869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89500" stop="89940"/>
              <exon start="90015" stop="90124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89500" stop="89938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89504" stop="89940"/>
              <exon start="90015" stop="90215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89547" stop="89940"/>
              <exon start="90015" stop="90247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89547" stop="89940"/>
              <exon start="90015" stop="90103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89547" stop="89889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89547" stop="89795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89582" stop="89940"/>
              <exon start="90015" stop="90255"/>
              <exon start="90349" stop="90652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89582" stop="89940"/>
              <exon start="90015" stop="90096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89584" stop="89940"/>
              <exon start="90015" stop="90255"/>
              <exon start="90349" stop="90583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89624" stop="89940"/>
              <exon start="90015" stop="90251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89624" stop="89940"/>
              <exon start="90015" stop="90248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89629" stop="89940"/>
              <exon start="90015" stop="90201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89655" stop="89940"/>
              <exon start="90015" stop="90255"/>
              <exon start="90349" stop="90532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89693" stop="89940"/>
              <exon start="90015" stop="90077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89737" stop="89940"/>
              <exon start="90015" stop="90255"/>
              <exon start="90349" stop="90476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89877" stop="89940"/>
              <exon start="90015" stop="90255"/>
              <exon start="90349" stop="90827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90070" stop="90255"/>
              <exon start="90349" stop="90678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90124" stop="90255"/>
              <exon start="90349" stop="90833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90124" stop="90255"/>
              <exon start="90349" stop="90637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90127" stop="90255"/>
              <exon start="90349" stop="90678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90215" stop="90255"/>
              <exon start="90349" stop="90840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90385" stop="90824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90386" stop="90827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90442" stop="90815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90443" stop="90840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90457" stop="90837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90570" stop="90827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226919" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTGAGAGAGAATTAAAAAAATTATAAACACAAAAAAAAAATTTCATCTTCCGCCGCCCACCGTTGCATGGCCAATAAAGTTTTTTGTCCGAAACTCCTTAAGAACCTCGGATTTCATGTCCGCCGTTTAAACTCAGCTCCGTCACCTCTTTCCGCCGTCCCACCGCTAAATTTTACTGGCGATTTTAACGCCGTGGAACCCGCACAACAAATTAACACAACCCTTCACCACCACCACGACCATCACAACATTATCAATTTCGATGATGTTAAGGAGCTTTTCTACGGTGTTCCCACCACGAAACTGATTCGATCTTCGATGACGTTACAAATGGCTGCTATTGATCCCATGGTTGATTTGGGCATGTGGGTAATGAATTCTAAACTTATGGAAATGCCTATTTTTAGGGAGGTTATTCTTGGGTTTGTTAAAAATACATTTTATGAACATTTTTGCGCCGGCAAAGACTTAACGGAAGCTAGACGGACCGTTACTAATCTATCGGATTCTGGGTTAAAAGCCATGCTTGATTATGGGGTGGAACATGCCACCGATAATGAATCTTGTGAACAGAGTACTGCGGCGTTTATTCAAACGATTGAATCAACCAAATCACTTCCCGAATCTTCT : GCAAGTTTTGTGGTAGCAAAGATAACTGCTATTTGTACCCCAAGGCTTCTCAAAAGAATGAGTGATTTGTTAAGATGGGAACAGAAAGATCCATCATTTAATCTTCCATGGAAGCGAGAGTCGCTTCCCCTTTTCGCCGAATCGAGCCCTGTTTATCACACTTGTAGCAAACCAGAGCCTCTATCGGTAGAGGAAGAGCGTGATCTTCAATTAGCTCATGAAAGACTTAGAAAAATTTGCGAGAAATGTTTGGAACATGAAGTTCCATTACTAATTGATGCGGAAGACACAACCATTCAACCTGCAATTGATTATTTTGCGTATTCAGCAGCAATTAAGTATCACAAAGATGATCAGCCTTTGATATTCGGAACAATTCAAGCTTACTTGAAGGACGCCAAGGAACGAATGGTTATTGCGAAAAAGGCTGCAGAGAAAATGGGAGTTCCAATGGGATTTAAGCTTGTGAGGGGCGCTTATATGTGTAGTGAAAAGGAATTGGCTTCTACATTAGGATTCAACTCTCCAATTCACGACAGCATTGAGCAAACACACGCTTGCTTCAATTCGTGCGCGGAGTTTATGATTGAAGAGATTGCTAATGGTTCTGGTGCAGTTGTTCTCGCCACTCATAACATTGAATCAG : GAAAACTTGCTGCAACCAAAGCTATAGATTTGGGAATAAAAGATGAGAGACAAAATCTCCAATTTGCTCAGCTATATGGTATGGCAGATGGGCTTTCATTTGGGCTGAGAAATGCAGGATTTCAAGTAAGCAAATATTTACCATTTGGTCCTGTAGAGCAGATTATGCATTACCTTATGAGGCGTGCTGAAGAAAACAGAGGCATGCTGTCTACATCGGCATTCGACAGACAACTCATGAG : GAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTAATTAACATTTTAAG</gDNA_template>
            <first_frame> H  L  R  E  N  *  K  N  Y  K  H  K  K  K  I  S  S  S  A  A  H  R  C  M  A  N  K  V  F  C  P  K  L  L  K  N  L  G  F  H  V  R  R  L  N  S  A  P  S  P  L  S  A  V  P  P  L  N  F  T  G  D  F  N  A  V  E  P  A  Q  Q  I  N  T  T  L  H  H  H  H  D  H  H  N  I  I  N  F  D  D  V  K  E  L  F  Y  G  V  P  T  T  K  L  I  R  S  S  M  T  L  Q  M  A  A  I  D  P  M  V  D  L  G  M  W  V  M  N  S  K  L  M  E  M  P  I  F  R  E  V  I  L  G  F  V  K  N  T  F  Y  E  H  F  C  A  G  K  D  L  T  E  A  R  R  T  V  T  N  L  S  D  S  G  L  K  A  M  L  D  Y  G  V  E  H  A  T  D  N  E  S  C  E  Q  S  T  A  A  F  I  Q  T  I  E  S  T  K  S  L  P  E  S  S  :  A  S  F  V  V  A  K  I  T  A  I  C  T  P  R  L  L  K  R  M  S  D  L  L  R  W  E  Q  K  D  P  S  F  N  L  P  W  K  R  E  S  L  P  L  F  A  E  S  S  P  V  Y  H  T  C  S  K  P  E  P  L  S  V  E  E  E  R  D  L  Q  L  A  H  E  R  L  R  K  I  C  E  K  C  L  E  H  E  V  P  L  L  I  D  A  E  D  T  T  I  Q  P  A  I  D  Y  F  A  Y  S  A  A  I  K  Y  H  K  D  D  Q  P  L  I  F  G  T  I  Q  A  Y  L  K  D  A  K  E  R  M  V  I  A  K  K  A  A  E  K  M  G  V  P  M  G  F  K  L  V  R  G  A  Y  M  C  S  E  K  E  L  A  S  T  L  G  F  N  S  P  I  H  D  S  I  E  Q  T  H  A  C  F  N  S  C  A  E  F  M  I  E  E  I  A  N  G  S  G  A  V  V  L  A  T  H  N  I  E  S   : G  K  L  A  A  T  K  A  I  D  L  G  I  K  D  E  R  Q  N  L  Q  F  A  Q  L  Y  G  M  A  D  G  L  S  F  G  L  R  N  A  G  F  Q  V  S  K  Y  L  P  F  G  P  V  E  Q  I  M  H  Y  L  M  R  R  A  E  E  N  R  G  M  L  S  T  S  A  F  D  R  Q  L  M  R :   K  E  L  S  R  R  F  E  V  A  T  S  *  I  H  I  Q  N  M  K  S  I  L  V  S  K  K  *  *  T  R  K  H  R  R  L  L  *  I  I  Q  *  C  E  G  K  N  *  *  G  *  S  K  Q  P  G  W  V  K  C  M  R  R  K  S  V  F  I  F  V  C  V  M  K  N  K  K  I  V  H  I  Y  F  R  S  T  T  C  I  F  L  H  V  L  F  F  R  F  Y  Y  I  Y  Y  I  M  Y  *  F  L  K  L  V  F  I  W  Y  R  V  L  E  I  E  M  E  E  G  I  P  R  V  E  P  K  C  R  N  Y  K  V  C  I  S  F  S  L  S  I  E  T  L  *  N  K  S  D  L  L  A  F  N  *  H  F  K </first_frame>
            <second_frame>  I  *  E  R  I  K  K  I  I  N  T  K  K  K  F  H  L  P  P  P  T  V  A  W  P  I  K  F  F  V  R  N  S  L  R  T  S  D  F  M  S  A  V  *  T  Q  L  R  H  L  F  P  P  S  H  R  *  I  L  L  A  I  L  T  P  W  N  P  H  N  K  L  T  Q  P  F  T  T  T  T  T  I  T  T  L  S  I  S  M  M  L  R  S  F  S  T  V  F  P  P  R  N  *  F  D  L  R  *  R  Y  K  W  L  L  L  I  P  W  L  I  W  A  C  G  *  *  I  L  N  L  W  K  C  L  F  L  G  R  L  F  L  G  L  L  K  I  H  F  M  N  I  F  A  P  A  K  T  *  R  K  L  D  G  P  L  L  I  Y  R  I  L  G  *  K  P  C  L  I  M  G  W  N  M  P  P  I  M  N  L  V  N  R  V  L  R  R  L  F  K  R  L  N  Q  P  N  H  F  P  N  L  L :   Q  V  L  W  *  Q  R  *  L  L  F  V  P  Q  G  F  S  K  E  *  V  I  C  *  D  G  N  R  K  I  H  H  L  I  F  H  G  S  E  S  R  F  P  F  S  P  N  R  A  L  F  I  T  L  V  A  N  Q  S  L  Y  R  *  R  K  S  V  I  F  N  *  L  M  K  D  L  E  K  F  A  R  N  V  W  N  M  K  F  H  Y  *  L  M  R  K  T  Q  P  F  N  L  Q  L  I  I  L  R  I  Q  Q  Q  L  S  I  T  K  M  I  S  L  *  Y  S  E  Q  F  K  L  T  *  R  T  P  R  N  E  W  L  L  R  K  R  L  Q  R  K  W  E  F  Q  W  D  L  S  L  *  G  A  L  I  C  V  V  K  R  N  W  L  L  H  *  D  S  T  L  Q  F  T  T  A  L  S  K  H  T  L  A  S  I  R  A  R  S  L  *  L  K  R  L  L  M  V  L  V  Q  L  F  S  P  L  I  T  L  N  Q  :  E  N  L  L  Q  P  K  L  *  I  W  E  *  K  M  R  D  K  I  S  N  L  L  S  Y  M  V  W  Q  M  G  F  H  L  G  *  E  M  Q  D  F  K  *  A  N  I  Y  H  L  V  L  *  S  R  L  C  I  T  L  *  G  V  L  K  K  T  E  A  C  C  L  H  R  H  S  T  D  N  S  *   : G  R  N  *  A  G  D  S  K  W  L  L  L  K  F  I  F  R  I  *  N  L  Y  *  *  V  R  N  N  K  R  G  N  I  A  D  Y  C  K  *  F  N  D  V  R  A  K  I  D  E  D  D  Q  S  N  L  D  G  *  N  A  *  G  G  S  Q  F  L  S  L  C  V  L  *  K  I  K  K  L  Y  I  F  I  L  G  P  L  L  V  S  F  S  M  C  Y  F  L  G  S  I  I  F  T  I  *  C  T  S  S  L  S  W  F  L  F  G  I  V  F  *  K  *  K  W  K  K  V  F  P  E  W  S  Q  N  V  E  I  T  K  C  V  S  V  S  L  S  L  S  R  H  Y  E  I  N  R  I  Y  W  P  L  I  N  I  L   </second_frame>
            <third_frame>   F  E  R  E  L  K  K  L  *  T  Q  K  K  N  F  I  F  R  R  P  P  L  H  G  Q  *  S  F  L  S  E  T  P  *  E  P  R  I  S  C  P  P  F  K  L  S  S  V  T  S  F  R  R  P  T  A  K  F  Y  W  R  F  *  R  R  G  T  R  T  T  N  *  H  N  P  S  P  P  P  R  P  S  Q  H  Y  Q  F  R  *  C  *  G  A  F  L  R  C  S  H  H  E  T  D  S  I  F  D  D  V  T  N  G  C  Y  *  S  H  G  *  F  G  H  V  G  N  E  F  *  T  Y  G  N  A  Y  F  *  G  G  Y  S  W  V  C  *  K  Y  I  L  *  T  F  L  R  R  Q  R  L  N  G  S  *  T  D  R  Y  *  S  I  G  F  W  V  K  S  H  A  *  L  W  G  G  T  C  H  R  *  *  I  L  *  T  E  Y  C  G  V  Y  S  N  D  *  I  N  Q  I  T  S  R  I  F   : C  K  F  C  G  S  K  D  N  C  Y  L  Y  P  K  A  S  Q  K  N  E  *  F  V  K  M  G  T  E  R  S  I  I  *  S  S  M  E  A  R  V  A  S  P  F  R  R  I  E  P  C  L  S  H  L  *  Q  T  R  A  S  I  G  R  G  R  A  *  S  S  I  S  S  *  K  T  *  K  N  L  R  E  M  F  G  T  *  S  S  I  T  N  *  C  G  R  H  N  H  S  T  C  N  *  L  F  C  V  F  S  S  N  *  V  S  Q  R  *  S  A  F  D  I  R  N  N  S  S  L  L  E  G  R  Q  G  T  N  G  Y  C  E  K  G  C  R  E  N  G  S  S  N  G  I  *  A  C  E  G  R  L  Y  V  *  *  K  G  I  G  F  Y  I  R  I  Q  L  S  N  S  R  Q  H  *  A  N  T  R  L  L  Q  F  V  R  G  V  Y  D  *  R  D  C  *  W  F  W  C  S  C  S  R  H  S  *  H  *  I  R :   K  T  C  C  N  Q  S  Y  R  F  G  N  K  R  *  E  T  K  S  P  I  C  S  A  I  W  Y  G  R  W  A  F  I  W  A  E  K  C  R  I  S  S  K  Q  I  F  T  I  W  S  C  R  A  D  Y  A  L  P  Y  E  A  C  *  R  K  Q  R  H  A  V  Y  I  G  I  R  Q  T  T  H  E  :  E  G  I  E  Q  E  I  R  S  G  Y  F  L  N  S  Y  S  E  Y  E  I  Y  I  S  K  *  E  I  I  N  E  E  T  S  P  T  T  V  N  N  S  M  M  *  G  Q  K  L  M  R  M  I  K  A  T  W  M  G  K  M  H  E  E  E  V  S  F  Y  L  C  V  C  Y  E  K  *  K  N  C  T  Y  L  F  *  V  H  Y  L  Y  L  S  P  C  A  I  F  *  V  L  L  Y  L  L  Y  N  V  L  V  P  *  V  G  F  Y  L  V  S  C  F  R  N  R  N  G  R  R  Y  S  Q  S  G  A  K  M  S  K  L  Q  S  V  Y  Q  F  L  S  L  Y  R  D  I  M  K  *  I  G  F  I  G  L  *  L  T  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0096G02.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88585" stop="89199"/>
                    <exon start="89295" stop="89940"/>
                    <exon start="90015" stop="90255"/>
                    <exon start="90349" stop="90388"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1539</number_coding_nucleotides>
                  <number_encoded_amino_acids>513</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNYKHKKKISSSAAHRCMANKVFCPKLLKNLGFHVRRLNSAPSPLSAVPPLNFTGDFNAVEPAQQINTTLHHHHDHHNIINFDDVKELFYGVPTTKLIRSSMTLQMAAIDPMVDLGMWVMNSKLMEMPIFREVILGFVKNTFYEHFCAGKDLTEARRTVTNLSDSGLKAMLDYGVEHATDNESCEQSTAAFIQTIESTKSLPESSASFVVAKITAICTPRLLKRMSDLLRWEQKDPSFNLPWKRESLPLFAESSPVYHTCSKPEPLSVEEERDLQLAHERLRKICEKCLEHEVPLLIDAEDTTIQPAIDYFAYSAAIKYHKDDQPLIFGTIQAYLKDAKERMVIAKKAAEKMGVPMGFKLVRGAYMCSEKELASTLGFNSPIHDSIEQTHACFNSCAEFMIEEIANGSGAVVLATHNIESGKLAATKAIDLGIKDERQNLQFAQLYGMADGLSFGLRNAGFQVSKYLPFGPVEQIMHYLMRRAEENRGMLSTSAFDRQLMRKELSRRFEVATS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="90342" e_stop="90840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="90342" e_stop="90840" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90342" stop="90836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90385" stop="90824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90386" stop="90827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90442" stop="90815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90443" stop="90840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90457" stop="90837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90570" stop="90827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226919" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCAGGAAGGAATTGAGCAGGAGATTCGAAGTGGCTACTTCTTAAATTCATATTCAGAATATGAAATCTATATTAGTAAGTAAGAAATAATAAACGAGGAAACATCGCCGACTACTGTAAATAATTCAATGATGTGAGGGCAAAAATTGATGAGGATGATCAAAGCAACCTGGATGGGTAAAATGCATGAGGAGGAAGTCAGTTTTTATCTTTGTGTGTGTTATGAAAAATAAAAAAATTGTACATATTTATTTTAGGTCCACTACTTGTATCTTTCTCCATGTGCTATTTTTTAGGTTCTATTATATTTACTATATAATGTACTAGTTCCTTAAGTTGGTTTTTATTTGGTATCGTGTTTTAGAAATAGAAATGGAAGAAGGTATTCCCAGAGTGGAGCCAAAATGTCGAAATTACAAAGTGTGTATCAGTTTCTCTCTCTCTATCGAGACATTATGAAATAAATCGGATTTATTGGCCTTTAATTAACATTTTAA</gDNA_template>
            <first_frame> F  A  G  R  N  *  A  G  D  S  K  W  L  L  L  K  F  I  F  R  I  *  N  L  Y  *  *  V  R  N  N  K  R  G  N  I  A  D  Y  C  K  *  F  N  D  V  R  A  K  I  D  E  D  D  Q  S  N  L  D  G  *  N  A  *  G  G  S  Q  F  L  S  L  C  V  L  *  K  I  K  K  L  Y  I  F  I  L  G  P  L  L  V  S  F  S  M  C  Y  F  L  G  S  I  I  F  T  I  *  C  T  S  S  L  S  W  F  L  F  G  I  V  F  *  K  *  K  W  K  K  V  F  P  E  W  S  Q  N  V  E  I  T  K  C  V  S  V  S  L  S  L  S  R  H  Y  E  I  N  R  I  Y  W  P  L  I  N  I  L  </first_frame>
            <second_frame>  L  Q  E  G  I  E  Q  E  I  R  S  G  Y  F  L  N  S  Y  S  E  Y  E  I  Y  I  S  K  *  E  I  I  N  E  E  T  S  P  T  T  V  N  N  S  M  M  *  G  Q  K  L  M  R  M  I  K  A  T  W  M  G  K  M  H  E  E  E  V  S  F  Y  L  C  V  C  Y  E  K  *  K  N  C  T  Y  L  F  *  V  H  Y  L  Y  L  S  P  C  A  I  F  *  V  L  L  Y  L  L  Y  N  V  L  V  P  *  V  G  F  Y  L  V  S  C  F  R  N  R  N  G  R  R  Y  S  Q  S  G  A  K  M  S  K  L  Q  S  V  Y  Q  F  L  S  L  Y  R  D  I  M  K  *  I  G  F  I  G  L  *  L  T  F  * </second_frame>
            <third_frame>   C  R  K  E  L  S  R  R  F  E  V  A  T  S  *  I  H  I  Q  N  M  K  S  I  L  V  S  K  K  *  *  T  R  K  H  R  R  L  L  *  I  I  Q  *  C  E  G  K  N  *  *  G  *  S  K  Q  P  G  W  V  K  C  M  R  R  K  S  V  F  I  F  V  C  V  M  K  N  K  K  I  V  H  I  Y  F  R  S  T  T  C  I  F  L  H  V  L  F  F  R  F  Y  Y  I  Y  Y  I  M  Y  *  F  L  K  L  V  F  I  W  Y  R  V  L  E  I  E  M  E  E  G  I  P  R  V  E  P  K  C  R  N  Y  K  V  C  I  S  F  S  L  S  I  E  T  L  *  N  K  S  D  L  L  A  F  N  *  H  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0096G02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="89074" PGL_stop="88605"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89074" e_stop="88605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="89074" e_stop="88605" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89074" stop="88605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88918" stop="88627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222233" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGATAGATTAGTAACGGTCCGTCTAGCTTCCGTTAAGTCTTTGCCGGCGCAAAAATGTTCATAAAATGTATTTTTAACAAACCCAAGAATAACCTCCCTAAAAATAGGCATTTCCATAAGTTTAGAATTCATTACCCACATGCCCAAATCAACCATGGGATCAATAGCAGCCATTTGTAACGTCATCGAAGATCGAATCAGTTTCGTGGTGGGAACACCGTAGAAAAGCTCCTTAACATCATCGAAATTGATAATGTTGTGATGGTCGTGGTGGTGGTGAAGGGTTGTGTTAATTTGTTGTGCGGGTTCCACGGCGTTAAAATCGCCAGTAAAATTTAGCGGTGGGACGGCGGAAAGAGGTGACGGAGCTGAGTTTAAACGGCGGACATGAAATCCGAGGTTCTTAAGGAGTTTCGGACAAAAAACTTTATTGGCCATGCAACGGTGGGCGGCGGAAGATGAAATTTTT</gDNA_template>
            <first_frame> P  I  D  *  *  R  S  V  *  L  P  L  S  L  C  R  R  K  N  V  H  K  M  Y  F  *  Q  T  Q  E  *  P  P  *  K  *  A  F  P  *  V  *  N  S  L  P  T  C  P  N  Q  P  W  D  Q  *  Q  P  F  V  T  S  S  K  I  E  S  V  S  W  W  E  H  R  R  K  A  P  *  H  H  R  N  *  *  C  C  D  G  R  G  G  G  E  G  L  C  *  F  V  V  R  V  P  R  R  *  N  R  Q  *  N  L  A  V  G  R  R  K  E  V  T  E  L  S  L  N  G  G  H  E  I  R  G  S  *  G  V  S  D  K  K  L  Y  W  P  C  N  G  G  R  R  K  M  K  F   </first_frame>
            <second_frame>  R  *  I  S  N  G  P  S  S  F  R  *  V  F  A  G  A  K  M  F  I  K  C  I  F  N  K  P  K  N  N  L  P  K  N  R  H  F  H  K  F  R  I  H  Y  P  H  A  Q  I  N  H  G  I  N  S  S  H  L  *  R  H  R  R  S  N  Q  F  R  G  G  N  T  V  E  K  L  L  N  I  I  E  I  D  N  V  V  M  V  V  V  V  V  K  G  C  V  N  L  L  C  G  F  H  G  V  K  I  A  S  K  I  *  R  W  D  G  G  K  R  *  R  S  *  V  *  T  A  D  M  K  S  E  V  L  K  E  F  R  T  K  N  F  I  G  H  A  T  V  G  G  G  R  *  N  F  </second_frame>
            <third_frame>   D  R  L  V  T  V  R  L  A  S  V  K  S  L  P  A  Q  K  C  S  *  N  V  F  L  T  N  P  R  I  T  S  L  K  I  G  I  S  I  S  L  E  F  I  T  H  M  P  K  S  T  M  G  S  I  A  A  I  C  N  V  I  E  D  R  I  S  F  V  V  G  T  P  *  K  S  S  L  T  S  S  K  L  I  M  L  *  W  S  W  W  W  *  R  V  V  L  I  C  C  A  G  S  T  A  L  K  S  P  V  K  F  S  G  G  T  A  E  R  G  D  G  A  E  F  K  R  R  T  *  N  P  R  F  L  R  S  F  G  Q  K  T  L  L  A  M  Q  R  W  A  A  E  D  E  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0096G02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="89557" PGL_stop="89276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89557" e_stop="89276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="89557" e_stop="89276" e_length="282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89557" stop="89276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280697" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTTCATGTTCCAAACATTTCTCGCAAATTTTTCTAAGTCTTTCATGAGCTAATTGAAGATCACGCTCTTCCTCTACCGATAGAGGCTCTGGTTTGCTACAAGTGTGATAAACAGGGCTCGATTCGGCGAAAAGGGGAAGCGACTCTCGCTTCCATGGAAGATTAAATGATGGATCTTTCTGTTCCCATCTTAACAAATCACTCATTCTTTTGAGAAGCCTTGGGGTACAAATAGCAGTTATCTTTGCTACCACAAAACTTGCCTGTTTCACCCCAAAAAAA</gDNA_template>
            <first_frame> T  S  C  S  K  H  F  S  Q  I  F  L  S  L  S  *  A  N  *  R  S  R  S  S  S  T  D  R  G  S  G  L  L  Q  V  *  *  T  G  L  D  S  A  K  R  G  S  D  S  R  F  H  G  R  L  N  D  G  S  F  C  S  H  L  N  K  S  L  I  L  L  R  S  L  G  V  Q  I  A  V  I  F  A  T  T  K  L  A  C  F  T  P  K  K </first_frame>
            <second_frame>  L  H  V  P  N  I  S  R  K  F  F  *  V  F  H  E  L  I  E  D  H  A  L  P  L  P  I  E  A  L  V  C  Y  K  C  D  K  Q  G  S  I  R  R  K  G  E  A  T  L  A  S  M  E  D  *  M  M  D  L  S  V  P  I  L  T  N  H  S  F  F  *  E  A  L  G  Y  K  *  Q  L  S  L  L  P  Q  N  L  P  V  S  P  Q  K   </second_frame>
            <third_frame>   F  M  F  Q  T  F  L  A  N  F  S  K  S  F  M  S  *  L  K  I  T  L  F  L  Y  R  *  R  L  W  F  A  T  S  V  I  N  R  A  R  F  G  E  K  G  K  R  L  S  L  P  W  K  I  K  *  W  I  F  L  F  P  S  *  Q  I  T  H  S  F  E  K  P  W  G  T  N  S  S  Y  L  C  Y  H  K  T  C  L  F  H  P  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0096G02.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 220 chains have been computed
$ 
$ memory statistics:
$ 436520 bytes spliced alignments in total
$ 195 spliced alignments have been stored
$ 2238 bytes was the average size of a spliced alignment
$ 26008 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1625 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 235 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:01:51
-->
