<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:09:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0121H01-vI5OU/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0121H01-vI5OU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0121H01-vI5OU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g27340" ref_strand="+" ref_description="C2_At3g27340">
      <seq>cgaagcatacacaccgcagtagactctccacgcctcaccagatttgctcttcaacctcctaaatttgtggaggttgagtttgaaaatggtagtctgtataagttgtcagctgagtatttgagaatatacagccccgctgttgatagtaagatcagatcgatttgtggtgagaaggtcatatctggtaggtgtcatgtcggaattatgtctgcagaacctattggaaattatggagtgaggttattgtttgatgacttgcataagactggtatctttacatgggactacttctaccatcttggaagtaacaaattcacccttatgagaaattacatcagaactctgaagaaacatggactaagccgggatccacctagacgaagatgaccttaagacgtggccatgagaaggctgatccacactatttaagctggaaaacatcctccccatatgctcagagtgaaatggtgacataaaattgtactgttgcaaatatttcaaagactagctcttgatatgctatcatatgttcagcggaatttgtggtgtgctatactctagatctagagattgaacatgcgacacaaaagaggtcattagtttctaaggaacattaaggaggctctttgtttgtaattttgatttgggatgcatgttggtgttgcagaacatgcttgattgaatgaagagaacagttcgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0121H01-vI5OU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0121H01.1" temp_strand="-" temp_description="C02SLe0121H01.1  AC215464.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0121H01 sequenced_by:kribb upload_account_name:korea">
        <position start="13898" stop="10965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13598" g_stop="13533" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13532" i_stop="12116" i_length="1417">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12115" g_stop="12008" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="174" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12007" i_stop="11848" i_length="160">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11847" g_stop="11783" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="239" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11782" i_stop="11697" i_length="86">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.667" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11696" g_stop="11239" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="694" r_length="455" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0121H01.1" gen_strand="-" ref_id="C2_At3g27340" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0121H01.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g27340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13598" e_stop="13533"/>
          <exon e_start="12115" e_stop="12008"/>
          <exon e_start="11847" e_stop="11783"/>
          <exon e_start="11696" e_stop="11239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCATATACACCACAGTAGATTCTCCACGCCTCACCAGATTTGCTCTTCAACCTCCTAAATTTGTAAGTCTGTCTAATGGATTGTTTGGCTTGAAAACTTAATTTCTAGGTTTTCGTATTTTTGCCTATAATGTTCTGGATTCCTGAGTTTATGTTTGTTTATCTTGCAATTATTCAGTACACAGGTCACAGATAACAGTGTTTAGAAGGTCTTTATGAAATTGTTATGGGGAACTGCAATTGGTATTAGCTGTTAACAGAACAATCCAATGAATATTTTACTGACCCGTTTCAAAATGTTTATGCAAGTGAATGGTGTTAGATTATTTTTAACTTGCTTTTAGTTTACACTTGTTGCGATAAATTTACATGTGAATAACTGAATTATTGCTTTCAATCATTCTGGTTCATGTTCAGTTGAGCAACTTCCTCTTCAATACTACATGTGTTATTTACTTTGTAGGGTTGATGGAAATTTATTTACTTAAATATTCCATTGTAAACATGTTAGGACCGGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAGCAAACCTCAAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAAGACACAAAGATTTAACGTGATTCGGTCAATCGACCTACGTCCACAAAGGAAATGAGCAATCCACTATAAATATGAGAGTATAAAATACAGAGAGAAACAACCTCAACCAATTCACTCAGAATTCATGAGAGGTTCACACAAGTGATAACGTATCAAGCTTGTGACCCATAAATTCTCCCCCTAACCAAAACTCTCAAAGCCCTTAAGACTACATTGTGAATGCTGATTAAGTTAGAAGGAACATTCCTCTATTTATAGAGTCCTAAACCTTTTCCTACAAGAAAAGGATTAGTCAATCCAAAACTTTTTTCTAAAAGGAAAACCTATTCATGGTAAGAAATTTAGGGCAAATAAAACCCAACAAAACATTCATCTTTTAGGCTTGTCTGGGAAAATACTCCAAGCTAGACACTTTGATTGTTTTCTTTATTTTGAATTTATTGAGTTGCTTTTATTCTATTTGGGGAGGAACTATTGAGTTGGTTTTGCTGCACCATCATTGATACATAAGATTGTGTTTGAGTCACCAAGTGCATGCCCTCCTTGTTCTAGGGAACTATAGAACCTGTGCTCCTTTCAGTGATATGTCAATAATGATGTGCACATAGTAGCATTATAAGCTTCAGTTTGACGATTGGACGGGAAAAAGGTTTTAAATAGCCCACATATAGTTGGAGAAAGGTGATGTTAGAGTGCTGCCTTTCCAAAAAAATTTAAATCATGAATCTAGTTATAGTCACGTCCCTTTGATGGATTTTGGAGACTGGTTTCATGTATCTCTTGTTTCATCAATCTGGATTCTGCAAAGTGCAAACTTGTTTCTTATAGGCTTCCATTACTCTAAGTTGGACCTGTCTTATCACTTGGTGAATCTTTTCAGGTGGAGGTGGAGTTTGAAAACGGTAGTCTGTATAAGTTGTCAGCTGAGTATTTGAGAATATACAGCCCCGCTGTTGATAGTAAGATCAGATCGATTTGCGGTGAGAAGGTAACTAGAGGAACACTTGCAGTTTTCTTTTACTGGGATATTCTCTTTGCAATTTTTGAAAACGAAGACGCATGATTTACTGGCAACATAGTTCCATCATCAAACTGGATTTAATATTGCACGATTTAAATTTTTCTAACTTATGTGCTTGTGTATTAAGGTCATATCTGGTAGGCGTCATGTCGGAATTATGTCTGCAGAACCTATTGGAAATTATGGAGTGAGGTAATAAGAGTAAACAACTATTTGTGTCTTAACAATTTACTTTCACTTTTTGTTATTTCTCATTCTCTTCATATGGTTCAACCTAGGTTATTATTTGATGACTTGCATAAGACTGGAATCTTTACATGGGACTACTTCTACCATCTTGGAAGTAACAAATTTGCCCTCATGAGAAATTACATCAGAACTCTGAAGAAACATGGACTAAGCCGCGATCCACCTAGACGAAGATGACCTTAAGACGTGCCCATGAGAAGGCTGATCCACACTATTTAAGCTGG-AAACATCCTCCTTATATATGCTCAGAGTGAAATTGTGACATAAAACTGTACTGTTGCAAATATTCTAAAGACTAGCTCTTGATATGTTATCATATGTTCAGGGATATTTGTGGTGTGCTATTTTCTAGATCTAGAGATTG-ACATGTGATACAAAAGAGGTCATTAGTTTCTAAGGAACATTAAGGAACCTCTTCGTTTGTAATTTAGATTTGGGAAGCATGTTGGTGTTGCAGAACAACATGCTTGATTGAATGAAAGGAACA</genome_strand>
        <mrna_strand>CGAAGCATACACACCGCAGTAGACTCTCCACGCCTCACCAGATTTGCTCTTCAACCTCCTAAATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGTTGAGTTTGAAAATGGTAGTCTGTATAAGTTGTCAGCTGAGTATTTGAGAATATACAGCCCCGCTGTTGATAGTAAGATCAGATCGATTTGTGGTGAGAAG................................................................................................................................................................GTCATATCTGGTAGGTGTCATGTCGGAATTATGTCTGCAGAACCTATTGGAAATTATGGAGTGAG......................................................................................GTTATTGTTTGATGACTTGCATAAGACTGGTATCTTTACATGGGACTACTTCTACCATCTTGGAAGTAACAAATTCACCCTTATGAGAAATTACATCAGAACTCTGAAGAAACATGGACTAAGCCGGGATCCACCTAGACGAAGATGACCTTAAGACGTGGCCATGAGAAGGCTGATCCACACTATTTAAGCTGGAAAACATCCTCC--CCATATGCTCAGAGTGAAATGGTGACATAAAATTGTACTGTTGCAAATATTTCAAAGACTAGCTCTTGATATGCTATCATATGTTCAGCGGAATTTGTGGTGTGCTATACTCTAGATCTAGAGATTGAACATGCGACACAAAAGAGGTCATTAGTTTCTAAGGAACATTAAGGAGGCTCTTTGTTTGTAATTTTGATTTGGGATGCATGTTGGTGTTGCAG---AACATGCTTGATTGAATGAAGAGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0121H01-vI5OU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g27325" ref_strand="+" ref_description="C2_At3g27325">
      <seq>gccctttctatgtttggccctgctgcctatcttatttgctctagtagtttcctgcctcatttctctacctcttcctccagccataagtttcttctctgtctcaacaatctgttacttatgtgcaaatggagtggtggctgtgctgatatctgcctcccaattgttattctacgttagtgcatctttacatgtattcatcaagaaacggtcgcaaacacgggaacataacttttcttctcttttcactgccttcctgtcatccaaggtagtcaggatcatgagattcaatccattatttgatatgacgcttgtctctttgaccctagtgtgcttcgctcatccagcattgggtcttcttttgctggtcatttctcatgctgtgtgctgccacaattccctgtccagttttttgatggcttcatttcacagccatacccagactaaggagttaatagaatctgggaacagacgtcagagtggatcggagcagttcataccccagtatgatggtgaaatcaactcgcatgttcctcagaaggagagtaattccagtagtctggactcagtaaaaagctatggtgacacccaattagagatcttcaatcatcggcatggcttgcttgtattacacttgcttgcaatgctgatgtttgtcccttcacttattgcgtggatccagagaatggggatcggtcagagcttgccgtggttcttggattctgtactttgcataggtgttttgctgcatggtgtatgtgactcaaagccggagttcaacttcttcttctttccttttccgggcatccaaagatgggagataaacctgagctttggctatcttcttggtggatacttttcctatatttgtggcttagccttggctccttacagaacattttaccccatggctgccattgggtttatatcatgtgcttttaggatcatagagaagagaagtagggaaaaaggggaaatgtaccatcatcgtaggaaacactctcataaacactagagaaaatactgccactattagcaatggttttccaaacagaatcctcttgtatacgatattgccacgtgcagaatgttgtgcaattgcgagattttctagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0121H01-vI5OU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0121H01.1" temp_strand="-" temp_description="C02SLe0121H01.1  AC215464.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0121H01 sequenced_by:kribb upload_account_name:korea">
        <position start="31857" stop="29228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31557" g_stop="31351" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31350" i_stop="31004" i_length="347">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31003" g_stop="30946" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="265" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30945" i_stop="30757" i_length="189">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30756" g_stop="30617" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="405" r_length="140" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30616" i_stop="30373" i_length="244">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30372" g_stop="30099" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="679" r_length="274" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30098" i_stop="29883" i_length="216">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29882" g_stop="29524" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="1033" r_length="354" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1114" polyA_stop="1123"/>
      <MATCH_line gen_id="C02SLe0121H01.1" gen_strand="-" ref_id="C2_At3g27325" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>1038</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0121H01.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g27325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31557" e_stop="31351"/>
          <exon e_start="31003" e_stop="30946"/>
          <exon e_start="30756" e_stop="30617"/>
          <exon e_start="30372" e_stop="30099"/>
          <exon e_start="29882" e_stop="29524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTTTCTATGTTTGGCCCTGCTACCTATCTTATTTGCTCTTGTACTTTCCTGCCTCATTTCTCTACCTCTTCCTCCAGCCATAAGTTTCATCTCTGTCTCAACAATCTGTTACTTATGTGCAAATGGAGTGGTGGCTGTGCTGATATCAGCCTCCCAGTTGTTGTTCTACGTTAGTGCATCTTTACATGTATTCATCAAGAAACGGTTAGTTTACTCTCTCTTGAATATATCTACCACATTTATGTTACGTAAGATTTTCATACAAGTGACTGATATCATTTATTAGTCAATTTACGGACCAAAGTTGCATGTGCTGGTGAAATTCAGTCTTAATCTCAAGAGAAATTTCTAGTCCCCCTACTTCCCAACTGTCCATAAACAATTAAAATACTCTCACTCAAGGAGTGCGCTGCAGACCTAAATAAATTAATAAAAGTGACTACTCTATAACAGTGTTAAGGTTTTTCTTAAGGTACCACATAATTTAACAGAAACCGTTATGGCAAGAAATTCATTACCAACTGAGCTAATGGTAATATAATCTTTTGCAGGTCGCAAACACGGGAACATAACTTTTCTCCTCTTTTCACTGCCTTCCTGTCATCCAAGGTTAGTTTAATTGTGGCATTGTAGCTTGCAAAAGCATAAGTTTGTAAAAGGCTGGATTTGTACATATATTTCGGAACTGAAATTGAATGCATCTTTTGTTCCTGGTCCTCTAATCTTAGTAAATGTCGAAATTGAATGCATCTTGCATTCCTTGTTCTCTTAATAAAAAAATTTTACTTATTGAAACAGGTAGTCAGGATCGTGAGATTCAATCCATTGTTTGATATGACACTTGTCTCTTTGACCCTAATGTGCTTCGCTCATCCAGCATTGGGTCTTCTTTTGCTGGTCATTTCTCATGCTGTGTGCTCCCACAATTCCCTGTCCAGGTACATCCCTAACTAGTACCCTTTCTCCACTCTTCTGTAGTAGTCTTATGCTGTATATTAGAATTGAGGGCCATCACATGACCATTGATTGATAGTGTGTGATTCCTAGCCGAATTCTGACCATTCCGAACTTCTGAATAGATTAAACATTTGACATTTGATATTTAGTTTTTGGCTCTGCTGATATTTGATATTTTGTTATGACAAATGTAGTCTAAAACCAATTTTTCTCGTCTGTAAACAGTTTTTTGATGGCTTCATTTCACAGCCGTACCCAGACTAAGGAGTTCATAGAATCTGGGAACAGACGTCAGAGTGGATCGAAGCAGTCCATACCCGAGCATGATGGTGAAATCAACACGCATGTTCCTCAGAAGGAGAGTAATTCCAGTAGTCTGGACTCAGTAAAAAGCTATGGTGACACCCAATTAGAGATCTTCAATCATCGGCATGGCTTGCTTGTATTACACTTGCTTGCAATGCTGATGTTTGTCCCTTCATTTATTGCGTGGATCCAGGTATTCCTTTTCTTTCTTTAGGACCAAGAGGATTTCACTGCCTTGTGTTCATATTTTGGAATCTCGCTTACTTTGCACTGATAAATTGATAGAGCAAATGCTCTCAATAGTCTTCTTAATGAAATAATATTTGGGTTTTTGTGGACATTGTTGATTGCTCGAAATAATTAAAAGTAGCATTAACATTATTCTTTTTTGGTATATGTTTGCACACAGAGAATGGGGATCGGTCATAGCTTGCCGTGGTTCTTGGATTCTATACTTTGCATAGGTGTTTTGCTGCATGGTGTATGTGACTCAAAGCCAGAGTTCAACTTCTTCTTCTTCTTTCCTTTTCCGGTCATCCAAAGATTGGAGATAAACCTGAGCTTTGGCTATCTTCTTGCTGGATACTTTTCCTATATTTGTGGCTTAGCCTTGGCTCCTTACATAACATTTTATCCCATGGCCGCCATTGGGTTTATATCATGTGCTTTTAGGATCATAGAGAAGAGAAGTAGGGAAAAGGGGGAAATGTACCATCACCGTAGGAAACACTCTCATAAACACTAAAGTGAAAATACTCCCACTATACG</genome_strand>
        <mrna_strand>GCCCTTTCTATGTTTGGCCCTGCTGCCTATCTTATTTGCTCTAGTAGTTTCCTGCCTCATTTCTCTACCTCTTCCTCCAGCCATAAGTTTCTTCTCTGTCTCAACAATCTGTTACTTATGTGCAAATGGAGTGGTGGCTGTGCTGATATCTGCCTCCCAATTGTTATTCTACGTTAGTGCATCTTTACATGTATTCATCAAGAAACG...........................................................................................................................................................................................................................................................................................................................................................GTCGCAAACACGGGAACATAACTTTTCTTCTCTTTTCACTGCCTTCCTGTCATCCAAG.............................................................................................................................................................................................GTAGTCAGGATCATGAGATTCAATCCATTATTTGATATGACGCTTGTCTCTTTGACCCTAGTGTGCTTCGCTCATCCAGCATTGGGTCTTCTTTTGCTGGTCATTTCTCATGCTGTGTGCTGCCACAATTCCCTGTCCAG....................................................................................................................................................................................................................................................TTTTTTGATGGCTTCATTTCACAGCCATACCCAGACTAAGGAGTTAATAGAATCTGGGAACAGACGTCAGAGTGGATCGGAGCAGTTCATACCCCAGTATGATGGTGAAATCAACTCGCATGTTCCTCAGAAGGAGAGTAATTCCAGTAGTCTGGACTCAGTAAAAAGCTATGGTGACACCCAATTAGAGATCTTCAATCATCGGCATGGCTTGCTTGTATTACACTTGCTTGCAATGCTGATGTTTGTCCCTTCACTTATTGCGTGGATCCAG........................................................................................................................................................................................................................AGAATGGGGATCGGTCAGAGCTTGCCGTGGTTCTTGGATTCTGTACTTTGCATAGGTGTTTTGCTGCATGGTGTATGTGACTCAAAGCCGGAGTTCAA---CTTCTTCTTCTTTCCTTTTCCGGGCATCCAAAGATGGGAGATAAACCTGAGCTTTGGCTATCTTCTTGGTGGATACTTTTCCTATATTTGTGGCTTAGCCTTGGCTCCTTACAGAACATTTTACCCCATGGCTGCCATTGGGTTTATATCATGTGCTTTTAGGATCATAGAGAAGAGAAGTAGGGAAAAAGGGGAAATGTACCATCATCGTAGGAAACACTCTCATAAACACT--AGAGAAAATACTGCCACTATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0121H01-vI5OU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g27310" ref_strand="+" ref_description="C2_At3g27310">
      <seq>tagaggcgaattcttgtttgcttgtgtgggtaatgatagttgattctgcatcagctataaagcgccagagattcaccgtcgttgatccaatggagttggaatcagctaaggcgaagcttgctgctgcaaaagaaaagtttggacgtgaaatccgtgtatttgaaacagcaacagcttcttcagtgcctcctgatgtttccagcaatgtgtcagaggagcccgaagacttctatgagttcactccggaggattattatcgacttttgggaactaaaaaagaagcgaagcacttgaagacgaagaaaattcgtgaggcagaagaagctgcgcgcagagcaaggataactaaggctgtaatcagagtacgcttcccggataattatatattggaggccacatttcatccgtcagagacaatcaagagcttacttgaccttcttgtgaaagtgattgctcgccctgaactgcctttctatatctataccactcctcctaagaagcaaataaaagatttttctcaggatttctattctgctggatttattcctggtgctgttgtttatttctctaacgatctacccaaaggtgatgatggtgctgcagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0121H01-vI5OU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLe0121H01.1" temp_strand="+" temp_description="C02SLe0121H01.1  AC215464.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0121H01 sequenced_by:kribb upload_account_name:korea">
        <position start="70449" stop="74421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70745" g_stop="70856" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70857" i_stop="72686" i_length="1830">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72687" g_stop="72783" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="207" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72784" i_stop="72902" i_length="119">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72903" g_stop="72977" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="282" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72978" i_stop="73301" i_length="324">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73302" g_stop="73369" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="350" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73370" i_stop="74051" i_length="682">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74052" g_stop="74181" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="480" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74182" i_stop="74292" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74293" g_stop="74421" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="606" r_length="126" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0121H01.1" gen_strand="+" ref_id="C2_At3g27310" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0121H01.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g27310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70745" e_stop="70856"/>
          <exon e_start="72687" e_stop="72783"/>
          <exon e_start="72903" e_stop="72977"/>
          <exon e_start="73302" e_stop="73369"/>
          <exon e_start="74052" e_stop="74181"/>
          <exon e_start="74293" e_stop="74421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGAGAGAATTCTTCTTTGCTTGTGTGGGTAATGATAGTTGATTCTGCACCAGCTACAAAGCGCCAGAGATTCACCGCCGTTGATCCGATGGAGTTGGAATCAGCTAAGGTATTCATTTCAATCTCATCTTTCTTTTCTCCTTTCAAGATACCGGTTCGATTTAACTTCTTGTTTTACCCCTTTTTGTGTGACTATTCAGACCAGTTCGCATGTGTTTCTGTGGTTGATTCATGGTGGGAAAAGCCATCTTGTTTGCTATTTTCTTGGTTTTCTTTATTTAGAATCTTGTAGAAAGAAGTTTGTATAAAGACTACTTCCAGGAAAAATCTCAACACAAGAAAGGCGCTAGTTGTATGTGCCTTTTGTTTACCTACATTCCGTTGTTTTAAAGTTGCTGTTTGTTGTTAATCTTTATACCCATTCCATTTGCTTTGAGTTGCTGTTTCTTGTTGATCTTTAAACCCATTCCATTGTTTTAAGAGTTGCTGTTTCTGGTTAATCTTTAAACCCATTCATTGTTTTAGAGTTGCTGCTTCTTGTTAATCTTCAAGCCCGTTCCATTGTTTTAGGTTTGCTGTGTCTTGTTAATCTTTAAACCCATTGACACACGTTCTTAATTATCTGCTTCTTGTTAATACTTAAACCCATTTATACACAATCCATTGTTTAAGAGTTGCTGCATACCTGCTTCTTGTTAGTATTTAAACCTATTTACATACATTTCGTTGTTTTATGTTTCTGTACATGGGAAATGTTGTTAGAACATCACCTTTCTTCCCATTTTATATGATCACTGATTTATCTCTTTGTGCCCATATAACAAATAAAGTGTATGCCCAACTCTTCAGTTTCTCTAGTATTGTATTGAGCAAATCAAGCATACAAGTGTGAAATTCAGGCATGCAAGTATTGCACTTTTTTTTTGTTATATATTTGTAATACACCCCTTATTTTTTTCAAAAATTGAAGCACTTGTAGAGATGTGCATAGGCCATAAAACTTCCGAATTGAACTGTGTTAAAGAATGACGGTTAATGAGTTGGGTGGACTCCTTATAAGGCTGGACAATCCTCCTCCCTTTGAGTTAGCTTTTGGGGTGTGAGTTAGGCCTAAAACCTAATTTCACAAATTGTTAAGGTTTAGCTTGACACATTTGTAATAGCCTGATTTGTATCTAGTAAGGAAAAAAAACAGTTGGGTGAACCTAACATCCAAGTTTATGCAGGGTTCGGGGGCTAGGTCCGCTCTCCAAGTGGTACATACCATGGTTGAAACCCATGACATATAGATCAAATGGAGATAACTTTACTGCTGCTCCAGGTCTCCCCTTCACCTAACAGCAAACAAATTAAAATTTAAAATAAAATAAGAAACTGCTCCGGTGTCACTGGTTATGATGTTGTTGATGATTATGATGATGATGATGTTGTTGTTGCAAACTGCTCTGACAGAGGCGGAGCTAGAATTTTCAATAAAGGGGTTCATAATGTGTAGAAATAGATACCCGAAGGAGGTTCAACATATATATACATATAAATTTATTTTAACCATGTATAAATAATATAATTTCCACTGAACTTAATGCAATGTAGCTCCGCCCCTGGCCCTGAAGGGGAAGACCAAAGATCAGCACTTCCTTAAAATTATTGAACTTGCAGCAGCACTGTGGACGATGAGTTATAGTAAAATTTAACTTGCAGCTGTAAAAGTAAAGAATGATAAAAAAAATCCCATACAAAATCTGCCAAATTCGGTTCTACTATCTGTCAAGTAAAGTTACCTGTTCCCCTTTGTGTAAATACATCCAGCTTTACTTCAGCTAAACTCTCAAAAAGCTAAAATCATGGAAAGCTCCGTCTGTTACTCAATCATGGAATATATATATATACACACATACATACTGGACTGTAACTTTTCTGTTTTATTGGGTTAATTCAGGCGAAGCTTGCTGCTGCAAAAGAAACGTTTGGACGTGAAATCCGTGTATTTGAAACAGCAACAGCTTCTTCAGTGCCTCCTGATGTTTCCAGCAATGGTACTTCCTACTTGACATAGAAATTATCACTAATACAACTTCCCAAACACGATTCTATGGTCTGTTTTCATATATGCTCATTTTATTTTGCTGTGGCCTTTCTCAATCATCTTCTGCAGTGTCAGAGGAGCCCGAAGACTTCTATGAGTTCACACCAGAGGATTATTATCGACTTTTGGGAACTAAAAAAGAAGGTAAGATACACTTGTATAGACTTTCAGATGAAAAATGGCTTCAAGTATTTGCTAAAGTGAAATTTCTAGCTGACCTCTAACAGAAGAACAAAAAAACATGTCAATTAGTTGTCTGTCGATTTATTTGACAAATTACACTAGAACTCCAGACTCTATTATTTTTCTTTTATGCTTGCGCCTTGGGTATATTCACCGTGTCTTCCACATTTTTACCTTCTTCAATGGATCTTGTTTATTATTATAGATCTGTAGAAATGTATACAGGAATTTGGTTATTTTAATGATTCTGCTTATTCTAACTGGTGTTGGGAAAATTTTCAACAGAGAAGCACTTGAAGACGAAGAAAATTCGTGAGGCAGAAGAAGCTGCACGCAGAGCAAGGATAACTAAGGTTTTCAGTTGATCTTTCTCTCCAGATGATTCTTTCACTTGTATCAAGTTTGAATAATTTGGTGTTAGATTTGGTAAATTAAGTTTTCATCAGTATTGTCAAAGCCACACTTGACATCTGAAGGTTGTTGTTGCTGAACATCTGAGGCTGAAAGTGTCATCTTGGACAGTTTTAGTGCCTAAATAAGGCTCTAAGCGTGCTCCTCATTGTGGATCTATCTTGGAGAGGGCGATAAGAAATAAATGCAGCTGGCGAAATGCTACTTTAATGGTTTAGAAAATATTGTGAATAAATGGTCAGTGATTATGAAGAGGAAATTTTAAGCTTTGCTGAAGAAAACTAGCCAGAAAGATTAATTGGAACTTAAAAAAACAAGTTATGTCCGAATTATTTGTTGAAAAAATAAATTCTGAACTTAATTGACATGACTTTTTATCCATATATGTTAACTGAATTGCAGATTTTTCAAATTTCTTGGCCCATACAACTTCTTGTCTGTGTACTGAGTTTTCTTCATCATACATATATTATCTTATTTGTTTCTTCATCTGCACCTTACTTTGGGGTGTTGGCTTTTATCGCAGCTTTGCACTTAAAGTCCCAGGGGGACCTTGACACTTTTCGACGTCTTTTCATTTGACATTATTGGTTTTTATATCACGTGTTGGTCTGTGTTGTTCAGGCTGTAATCAGAGTACGCTTCCCGGATAATTATATATTGGAGGCCACATTTCATCCGTCAGAGACAATCAAGAGCTTACTTGACCTTCTTGTGAAAGTGATTGCTCACCCTGAACTGCCTTTCTATATCTGTAAGATTATTCTAAACATTTGCTACATTTTACTTTTTCCTATATTTTACTCTCAAGAGCAGTTTATAATAATGGTGTGGCTGAAGATTTAATGCTTGTCCGTTATTTCAGATACCACTCCTCCTAAGAAGCAAATAAAAGATTTTTCCAAGGATTTCTATTCCGCTGGATTTATTCCTGGTGCTGTTGTTTATTTCTCTTACGATCTACCCAAAGGTTAGTGCAAACTGTTAACAGTCT</genome_strand>
        <mrna_strand>TAG-AG-GCGAATTCTTGTTTGCTTGTGTGGGTAATGATAGTTGATTCTGCATCAGCTATAAAGCGCCAGAGATTCACCGTCGTTGATCCAATGGAGTTGGAATCAGCTAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAGCTTGCTGCTGCAAAAGAAAAGTTTGGACGTGAAATCCGTGTATTTGAAACAGCAACAGCTTCTTCAGTGCCTCCTGATGTTTCCAGCAATG.......................................................................................................................TGTCAGAGGAGCCCGAAGACTTCTATGAGTTCACTCCGGAGGATTATTATCGACTTTTGGGAACTAAAAAAGAAG....................................................................................................................................................................................................................................................................................................................................CGAAGCACTTGAAGACGAAGAAAATTCGTGAGGCAGAAGAAGCTGCGCGCAGAGCAAGGATAACTAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTAATCAGAGTACGCTTCCCGGATAATTATATATTGGAGGCCACATTTCATCCGTCAGAGACAATCAAGAGCTTACTTGACCTTCTTGTGAAAGTGATTGCTCGCCCTGAACTGCCTTTCTATATCT...............................................................................................................ATACCACTCCTCCTAAGAAGCAAATAAAAGATTTTTCTCAGGATTTCTATTCTGCTGGATTTATTCCTGGTGCTGTTGTTTATTTCTCTAACGATCTACCCAAAGGTGA-TG-ATGGTGCT-GCAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13598" PGL_stop="11239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13598" e_stop="13533"/>
            <exon e_start="12115" e_stop="12008"/>
            <exon e_start="11847" e_stop="11783"/>
            <exon e_start="11696" e_stop="11239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.971" e_score="0.955"/>
          <exon-intron don_prob="0.957" acc_prob="0.986" e_score="0.972"/>
          <exon-intron don_prob="0.995" acc_prob="0.667" e_score="0.985"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="13598" e_stop="13533" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.971">
            <gDNA_intron_boundary i_start="13532" i_stop="12116" i_length="1417"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="12115" e_stop="12008" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.986">
            <gDNA_intron_boundary i_start="12007" i_stop="11848" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="11847" e_stop="11783" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.667">
            <gDNA_intron_boundary i_start="11782" i_stop="11697" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.919">
            <gDNA_exon_boundary e_start="11696" e_stop="11239" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13598" stop="13533"/>
              <exon start="12115" stop="12008"/>
              <exon start="11847" stop="11783"/>
              <exon start="11696" stop="11239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g27340" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAGCATATACACCACAGTAGATTCTCCACGCCTCACCAGATTTGCTCTTCAACCTCCTAAATTT : GTGGAGGTGGAGTTTGAAAACGGTAGTCTGTATAAGTTGTCAGCTGAGTATTTGAGAATATACAGCCCCGCTGTTGATAGTAAGATCAGATCGATTTGCGGTGAGAAG : GTCATATCTGGTAGGCGTCATGTCGGAATTATGTCTGCAGAACCTATTGGAAATTATGGAGTGAG : GTTATTATTTGATGACTTGCATAAGACTGGAATCTTTACATGGGACTACTTCTACCATCTTGGAAGTAACAAATTTGCCCTCATGAGAAATTACATCAGAACTCTGAAGAAACATGGACTAAGCCGCGATCCACCTAGACGAAGATGACCTTAAGACGTGCCCATGAGAAGGCTGATCCACACTATTTAAGCTGGAAACATCCTCCTTATATATGCTCAGAGTGAAATTGTGACATAAAACTGTACTGTTGCAAATATTCTAAAGACTAGCTCTTGATATGTTATCATATGTTCAGGGATATTTGTGGTGTGCTATTTTCTAGATCTAGAGATTGACATGTGATACAAAAGAGGTCATTAGTTTCTAAGGAACATTAAGGAACCTCTTCGTTTGTAATTTAGATTTGGGAAGCATGTTGGTGTTGCAGAACAACATGCTTGATTGAATGAAAGGAACA</gDNA_template>
            <first_frame> R  S  I  Y  T  T  V  D  S  P  R  L  T  R  F  A  L  Q  P  P  K  F  :  V  E  V  E  F  E  N  G  S  L  Y  K  L  S  A  E  Y  L  R  I  Y  S  P  A  V  D  S  K  I  R  S  I  C  G  E  K  :  V  I  S  G  R  R  H  V  G  I  M  S  A  E  P  I  G  N  Y  G  V  R :   L  L  F  D  D  L  H  K  T  G  I  F  T  W  D  Y  F  Y  H  L  G  S  N  K  F  A  L  M  R  N  Y  I  R  T  L  K  K  H  G  L  S  R  D  P  P  R  R  R  *  P  *  D  V  P  M  R  R  L  I  H  T  I  *  A  G  N  I  L  L  I  Y  A  Q  S  E  I  V  T  *  N  C  T  V  A  N  I  L  K  T  S  S  *  Y  V  I  I  C  S  G  I  F  V  V  C  Y  F  L  D  L  E  I  D  M  *  Y  K  R  G  H  *  F  L  R  N  I  K  E  P  L  R  L  *  F  R  F  G  K  H  V  G  V  A  E  Q  H  A  *  L  N  E  R  N  </first_frame>
            <second_frame>  E  A  Y  T  P  Q  *  I  L  H  A  S  P  D  L  L  F  N  L  L  N  L :   W  R  W  S  L  K  T  V  V  C  I  S  C  Q  L  S  I  *  E  Y  T  A  P  L  L  I  V  R  S  D  R  F  A  V  R  R :   S  Y  L  V  G  V  M  S  E  L  C  L  Q  N  L  L  E  I  M  E  *   : G  Y  Y  L  M  T  C  I  R  L  E  S  L  H  G  T  T  S  T  I  L  E  V  T  N  L  P  S  *  E  I  T  S  E  L  *  R  N  M  D  *  A  A  I  H  L  D  E  D  D  L  K  T  C  P  *  E  G  *  S  T  L  F  K  L  E  T  S  S  L  Y  M  L  R  V  K  L  *  H  K  T  V  L  L  Q  I  F  *  R  L  A  L  D  M  L  S  Y  V  Q  G  Y  L  W  C  A  I  F  *  I  *  R  L  T  C  D  T  K  E  V  I  S  F  *  G  T  L  R  N  L  F  V  C  N  L  D  L  G  S  M  L  V  L  Q  N  N  M  L  D  *  M  K  G  T </second_frame>
            <third_frame>   K  H  I  H  H  S  R  F  S  T  P  H  Q  I  C  S  S  T  S  *  I   : C  G  G  G  V  *  K  R  *  S  V  *  V  V  S  *  V  F  E  N  I  Q  P  R  C  *  *  *  D  Q  I  D  L  R  *  E   : G  H  I  W  *  A  S  C  R  N  Y  V  C  R  T  Y  W  K  L  W  S  E  :  V  I  I  *  *  L  A  *  D  W  N  L  Y  M  G  L  L  L  P  S  W  K  *  Q  I  C  P  H  E  K  L  H  Q  N  S  E  E  T  W  T  K  P  R  S  T  *  T  K  M  T  L  R  R  A  H  E  K  A  D  P  H  Y  L  S  W  K  H  P  P  Y  I  C  S  E  *  N  C  D  I  K  L  Y  C  C  K  Y  S  K  D  *  L  L  I  C  Y  H  M  F  R  D  I  C  G  V  L  F  S  R  S  R  D  *  H  V  I  Q  K  R  S  L  V  S  K  E  H  *  G  T  S  S  F  V  I  *  I  W  E  A  C  W  C  C  R  T  T  C  L  I  E  *  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0121H01.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13598" stop="13533"/>
                    <exon start="12115" stop="12008"/>
                    <exon start="11847" stop="11783"/>
                    <exon start="11696" stop="11549"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSIYTTVDSPRLTRFALQPPKFVEVEFENGSLYKLSAEYLRIYSPAVDSKIRSICGEKVISGRRHVGIMSAEPIGNYGVRLLFDDLHKTGIFTWDYFYHLGSNKFALMRNYIRTLKKHGLSRDPPRRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="31557" PGL_stop="29524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31557" e_stop="31351"/>
            <exon e_start="31003" e_stop="30946"/>
            <exon e_start="30756" e_stop="30617"/>
            <exon e_start="30372" e_stop="30099"/>
            <exon e_start="29882" e_stop="29524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.914" e_score="0.966"/>
          <exon-intron don_prob="0.976" acc_prob="0.993" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="0.964"/>
          <exon-intron don_prob="0.957" acc_prob="0.978" e_score="0.971"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="31557" e_stop="31351" e_length="207"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.914">
            <gDNA_intron_boundary i_start="31350" i_stop="31004" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="31003" e_stop="30946" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.993">
            <gDNA_intron_boundary i_start="30945" i_stop="30757" i_length="189"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="30756" e_stop="30617" e_length="140"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="30616" i_stop="30373" i_length="244"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="30372" e_stop="30099" e_length="274"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.978">
            <gDNA_intron_boundary i_start="30098" i_stop="29883" i_length="216"/>
          </intron>
          <exon e_serial="5" e_score="0.944">
            <gDNA_exon_boundary e_start="29882" e_stop="29524" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31557" stop="31351"/>
              <exon start="31003" stop="30946"/>
              <exon start="30756" stop="30617"/>
              <exon start="30372" stop="30099"/>
              <exon start="29882" stop="29524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g27325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCCTTTCTATGTTTGGCCCTGCTACCTATCTTATTTGCTCTTGTACTTTCCTGCCTCATTTCTCTACCTCTTCCTCCAGCCATAAGTTTCATCTCTGTCTCAACAATCTGTTACTTATGTGCAAATGGAGTGGTGGCTGTGCTGATATCAGCCTCCCAGTTGTTGTTCTACGTTAGTGCATCTTTACATGTATTCATCAAGAAACG : GTCGCAAACACGGGAACATAACTTTTCTCCTCTTTTCACTGCCTTCCTGTCATCCAAG : GTAGTCAGGATCGTGAGATTCAATCCATTGTTTGATATGACACTTGTCTCTTTGACCCTAATGTGCTTCGCTCATCCAGCATTGGGTCTTCTTTTGCTGGTCATTTCTCATGCTGTGTGCTCCCACAATTCCCTGTCCAG : TTTTTTGATGGCTTCATTTCACAGCCGTACCCAGACTAAGGAGTTCATAGAATCTGGGAACAGACGTCAGAGTGGATCGAAGCAGTCCATACCCGAGCATGATGGTGAAATCAACACGCATGTTCCTCAGAAGGAGAGTAATTCCAGTAGTCTGGACTCAGTAAAAAGCTATGGTGACACCCAATTAGAGATCTTCAATCATCGGCATGGCTTGCTTGTATTACACTTGCTTGCAATGCTGATGTTTGTCCCTTCATTTATTGCGTGGATCCAG : AGAATGGGGATCGGTCATAGCTTGCCGTGGTTCTTGGATTCTATACTTTGCATAGGTGTTTTGCTGCATGGTGTATGTGACTCAAAGCCAGAGTTCAACTTCTTCTTCTTCTTTCCTTTTCCGGTCATCCAAAGATTGGAGATAAACCTGAGCTTTGGCTATCTTCTTGCTGGATACTTTTCCTATATTTGTGGCTTAGCCTTGGCTCCTTACATAACATTTTATCCCATGGCCGCCATTGGGTTTATATCATGTGCTTTTAGGATCATAGAGAAGAGAAGTAGGGAAAAGGGGGAAATGTACCATCACCGTAGGAAACACTCTCATAAACACTAAAGTGAAAATACTCCCACTATACG</gDNA_template>
            <first_frame> A  L  S  M  F  G  P  A  T  Y  L  I  C  S  C  T  F  L  P  H  F  S  T  S  S  S  S  H  K  F  H  L  C  L  N  N  L  L  L  M  C  K  W  S  G  G  C  A  D  I  S  L  P  V  V  V  L  R  *  C  I  F  T  C  I  H  Q  E  T  :  V  A  N  T  G  T  *  L  F  S  S  F  H  C  L  P  V  I  Q   : G  S  Q  D  R  E  I  Q  S  I  V  *  Y  D  T  C  L  F  D  P  N  V  L  R  S  S  S  I  G  S  S  F  A  G  H  F  S  C  C  V  L  P  Q  F  P  V  Q  :  F  F  D  G  F  I  S  Q  P  Y  P  D  *  G  V  H  R  I  W  E  Q  T  S  E  W  I  E  A  V  H  T  R  A  *  W  *  N  Q  H  A  C  S  S  E  G  E  *  F  Q  *  S  G  L  S  K  K  L  W  *  H  P  I  R  D  L  Q  S  S  A  W  L  A  C  I  T  L  A  C  N  A  D  V  C  P  F  I  Y  C  V  D  P   : E  N  G  D  R  S  *  L  A  V  V  L  G  F  Y  T  L  H  R  C  F  A  A  W  C  M  *  L  K  A  R  V  Q  L  L  L  L  L  S  F  S  G  H  P  K  I  G  D  K  P  E  L  W  L  S  S  C  W  I  L  F  L  Y  L  W  L  S  L  G  S  L  H  N  I  L  S  H  G  R  H  W  V  Y  I  M  C  F  *  D  H  R  E  E  K  *  G  K  G  G  N  V  P  S  P  *  E  T  L  S  *  T  L  K  *  K  Y  S  H  Y  T </first_frame>
            <second_frame>  P  F  L  C  L  A  L  L  P  I  L  F  A  L  V  L  S  C  L  I  S  L  P  L  P  P  A  I  S  F  I  S  V  S  T  I  C  Y  L  C  A  N  G  V  V  A  V  L  I  S  A  S  Q  L  L  F  Y  V  S  A  S  L  H  V  F  I  K  K  R :   S  Q  T  R  E  H  N  F  S  P  L  F  T  A  F  L  S  S  K  :  V  V  R  I  V  R  F  N  P  L  F  D  M  T  L  V  S  L  T  L  M  C  F  A  H  P  A  L  G  L  L  L  L  V  I  S  H  A  V  C  S  H  N  S  L  S  S :   F  L  M  A  S  F  H  S  R  T  Q  T  K  E  F  I  E  S  G  N  R  R  Q  S  G  S  K  Q  S  I  P  E  H  D  G  E  I  N  T  H  V  P  Q  K  E  S  N  S  S  S  L  D  S  V  K  S  Y  G  D  T  Q  L  E  I  F  N  H  R  H  G  L  L  V  L  H  L  L  A  M  L  M  F  V  P  S  F  I  A  W  I  Q  :  R  M  G  I  G  H  S  L  P  W  F  L  D  S  I  L  C  I  G  V  L  L  H  G  V  C  D  S  K  P  E  F  N  F  F  F  F  F  P  F  P  V  I  Q  R  L  E  I  N  L  S  F  G  Y  L  L  A  G  Y  F  S  Y  I  C  G  L  A  L  A  P  Y  I  T  F  Y  P  M  A  A  I  G  F  I  S  C  A  F  R  I  I  E  K  R  S  R  E  K  G  E  M  Y  H  H  R  R  K  H  S  H  K  H  *  S  E  N  T  P  T  I   </second_frame>
            <third_frame>   P  F  Y  V  W  P  C  Y  L  S  Y  L  L  L  Y  F  P  A  S  F  L  Y  L  F  L  Q  P  *  V  S  S  L  S  Q  Q  S  V  T  Y  V  Q  M  E  W  W  L  C  *  Y  Q  P  P  S  C  C  S  T  L  V  H  L  Y  M  Y  S  S  R  N   : G  R  K  H  G  N  I  T  F  L  L  F  S  L  P  S  C  H  P  R :   *  S  G  S  *  D  S  I  H  C  L  I  *  H  L  S  L  *  P  *  C  A  S  L  I  Q  H  W  V  F  F  C  W  S  F  L  M  L  C  A  P  T  I  P  C  P   : V  F  *  W  L  H  F  T  A  V  P  R  L  R  S  S  *  N  L  G  T  D  V  R  V  D  R  S  S  P  Y  P  S  M  M  V  K  S  T  R  M  F  L  R  R  R  V  I  P  V  V  W  T  Q  *  K  A  M  V  T  P  N  *  R  S  S  I  I  G  M  A  C  L  Y  Y  T  C  L  Q  C  *  C  L  S  L  H  L  L  R  G  S  R :   E  W  G  S  V  I  A  C  R  G  S  W  I  L  Y  F  A  *  V  F  C  C  M  V  Y  V  T  Q  S  Q  S  S  T  S  S  S  S  F  L  F  R  S  S  K  D  W  R  *  T  *  A  L  A  I  F  L  L  D  T  F  P  I  F  V  A  *  P  W  L  L  T  *  H  F  I  P  W  P  P  L  G  L  Y  H  V  L  L  G  S  *  R  R  E  V  G  K  R  G  K  C  T  I  T  V  G  N  T  L  I  N  T  K  V  K  I  L  P  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0121H01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31556" stop="31351"/>
                    <exon start="31003" stop="30946"/>
                    <exon start="30756" stop="30617"/>
                    <exon start="30372" stop="30099"/>
                    <exon start="29882" stop="29547"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFLCLALLPILFALVLSCLISLPLPPAISFISVSTICYLCANGVVAVLISASQLLFYVSASLHVFIKKRSQTREHNFSPLFTAFLSSKVVRIVRFNPLFDMTLVSLTLMCFAHPALGLLLLVISHAVCSHNSLSSFLMASFHSRTQTKEFIESGNRRQSGSKQSIPEHDGEINTHVPQKESNSSSLDSVKSYGDTQLEIFNHRHGLLVLHLLAMLMFVPSFIAWIQRMGIGHSLPWFLDSILCIGVLLHGVCDSKPEFNFFFFFPFPVIQRLEINLSFGYLLAGYFSYICGLALAPYITFYPMAAIGFISCAFRIIEKRSREKGEMYHHRRKHSHKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="70745" PGL_stop="74421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70745" e_stop="70856"/>
            <exon e_start="72687" e_stop="72783"/>
            <exon e_start="72903" e_stop="72977"/>
            <exon e_start="73302" e_stop="73369"/>
            <exon e_start="74052" e_stop="74181"/>
            <exon e_start="74293" e_stop="74421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="0.920"/>
          <exon-intron don_prob="0.968" acc_prob="0.982" e_score="0.990"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="0.973"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="0.971"/>
          <exon-intron don_prob="0.998" acc_prob="0.920" e_score="0.992"/>
          <exon-only e_score="0.884"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="70745" e_stop="70856" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70857" i_stop="72686" i_length="1830"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="72687" e_stop="72783" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.982">
            <gDNA_intron_boundary i_start="72784" i_stop="72902" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="72903" e_stop="72977" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72978" i_stop="73301" i_length="324"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="73302" e_stop="73369" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73370" i_stop="74051" i_length="682"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="74052" e_stop="74181" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.920">
            <gDNA_intron_boundary i_start="74182" i_stop="74292" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="0.884">
            <gDNA_exon_boundary e_start="74293" e_stop="74421" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70745" stop="70856"/>
              <exon start="72687" stop="72783"/>
              <exon start="72903" stop="72977"/>
              <exon start="73302" stop="73369"/>
              <exon start="74052" stop="74181"/>
              <exon start="74293" stop="74421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g27310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAGAGAGAATTCTTCTTTGCTTGTGTGGGTAATGATAGTTGATTCTGCACCAGCTACAAAGCGCCAGAGATTCACCGCCGTTGATCCGATGGAGTTGGAATCAGCTAAG : GCGAAGCTTGCTGCTGCAAAAGAAACGTTTGGACGTGAAATCCGTGTATTTGAAACAGCAACAGCTTCTTCAGTGCCTCCTGATGTTTCCAGCAATG : TGTCAGAGGAGCCCGAAGACTTCTATGAGTTCACACCAGAGGATTATTATCGACTTTTGGGAACTAAAAAAGAAG : AGAAGCACTTGAAGACGAAGAAAATTCGTGAGGCAGAAGAAGCTGCACGCAGAGCAAGGATAACTAAG : GCTGTAATCAGAGTACGCTTCCCGGATAATTATATATTGGAGGCCACATTTCATCCGTCAGAGACAATCAAGAGCTTACTTGACCTTCTTGTGAAAGTGATTGCTCACCCTGAACTGCCTTTCTATATCT : ATACCACTCCTCCTAAGAAGCAAATAAAAGATTTTTCCAAGGATTTCTATTCCGCTGGATTTATTCCTGGTGCTGTTGTTTATTTCTCTTACGATCTACCCAAAGGTTAGTGCAAACTGTTAACAGTCT</gDNA_template>
            <first_frame> Q  K  R  E  F  F  F  A  C  V  G  N  D  S  *  F  C  T  S  Y  K  A  P  E  I  H  R  R  *  S  D  G  V  G  I  S  *   : G  E  A  C  C  C  K  R  N  V  W  T  *  N  P  C  I  *  N  S  N  S  F  F  S  A  S  *  C  F  Q  Q  C :   V  R  G  A  R  R  L  L  *  V  H  T  R  G  L  L  S  T  F  G  N  *  K  R  R :   E  A  L  E  D  E  E  N  S  *  G  R  R  S  C  T  Q  S  K  D  N  *   : G  C  N  Q  S  T  L  P  G  *  L  Y  I  G  G  H  I  S  S  V  R  D  N  Q  E  L  T  *  P  S  C  E  S  D  C  S  P  *  T  A  F  L  Y  L :   Y  H  S  S  *  E  A  N  K  R  F  F  Q  G  F  L  F  R  W  I  Y  S  W  C  C  C  L  F  L  L  R  S  T  Q  R  L  V  Q  T  V  N  S   </first_frame>
            <second_frame>  R  R  E  N  S  S  L  L  V  W  V  M  I  V  D  S  A  P  A  T  K  R  Q  R  F  T  A  V  D  P  M  E  L  E  S  A  K  :  A  K  L  A  A  A  K  E  T  F  G  R  E  I  R  V  F  E  T  A  T  A  S  S  V  P  P  D  V  S  S  N   : V  S  E  E  P  E  D  F  Y  E  F  T  P  E  D  Y  Y  R  L  L  G  T  K  K  E   : E  K  H  L  K  T  K  K  I  R  E  A  E  E  A  A  R  R  A  R  I  T  K  :  A  V  I  R  V  R  F  P  D  N  Y  I  L  E  A  T  F  H  P  S  E  T  I  K  S  L  L  D  L  L  V  K  V  I  A  H  P  E  L  P  F  Y  I   : Y  T  T  P  P  K  K  Q  I  K  D  F  S  K  D  F  Y  S  A  G  F  I  P  G  A  V  V  Y  F  S  Y  D  L  P  K  G  *  C  K  L  L  T  V  </second_frame>
            <third_frame>   E  E  R  I  L  L  C  L  C  G  *  *  *  L  I  L  H  Q  L  Q  S  A  R  D  S  P  P  L  I  R  W  S  W  N  Q  L  R :   R  S  L  L  L  Q  K  K  R  L  D  V  K  S  V  Y  L  K  Q  Q  Q  L  L  Q  C  L  L  M  F  P  A  M  :  C  Q  R  S  P  K  T  S  M  S  S  H  Q  R  I  I  I  D  F  W  E  L  K  K  K  :  R  S  T  *  R  R  R  K  F  V  R  Q  K  K  L  H  A  E  Q  G  *  L  R :   L  *  S  E  Y  A  S  R  I  I  I  Y  W  R  P  H  F  I  R  Q  R  Q  S  R  A  Y  L  T  F  L  *  K  *  L  L  T  L  N  C  L  S  I  S  :  I  P  L  L  L  R  S  K  *  K  I  F  P  R  I  S  I  P  L  D  L  F  L  V  L  L  F  I  S  L  T  I  Y  P  K  V  S  A  N  C  *  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0121H01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70746" stop="70856"/>
                    <exon start="72687" stop="72783"/>
                    <exon start="72903" stop="72977"/>
                    <exon start="73302" stop="73369"/>
                    <exon start="74052" stop="74181"/>
                    <exon start="74293" stop="74402"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRENSSLLVWVMIVDSAPATKRQRFTAVDPMELESAKAKLAAAKETFGREIRVFETATASSVPPDVSSNVSEEPEDFYEFTPEDYYRLLGTKKEEKHLKTKKIREAEEAARRARITKAVIRVRFPDNYILEATFHPSETIKSLLDLLVKVIAHPELPFYIYTTPPKKQIKDFSKDFYSAGFIPGAVVYFSYDLPKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 100 chains have been computed
$ 
$ memory statistics:
$ 5816 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 1938 bytes was the average size of a spliced alignment
$ 8264 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2754 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 100 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:09:17
-->
