<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:11:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418285" ref_strand="+" ref_description="SGN-E418285 [STM-27-O9]">
      <seq>cgattttcttcaactgtcaaaatttactctctccctctgtaaacctaacccaattatttcagtcgccattacagttcaagatctgagtttttcttagaaacgaaaaatgtcttcttttgtgattttcttgctaacattgctctcaattttcccatttcgacaatgtcatggccgtcttttcacttttgaaatgcaccaccgtttctctgaaactgtcaagaaacttgctggtccacttcaaaattggccggtaaagggaagtctccagtattatactcagttggccaaccatgataagttgctacatggcaggaggcttttcaaatttgatggaccacttactttctctgatggcaattccactttccggatcagctctcttggattcttgcattacaccacggtgactttgggaacacctgggttgaagtttcttgtggctcttgatactgggagtgacttattttgggtgccttgtgaatgcggcagatgtgcttctactgatgatcctacactttacagctctgattttgagcttagcatatacagcctgaatggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="1512" stop="174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1184" g_stop="774" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="773" i_stop="638" i_length="136">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="637" g_stop="499" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="526" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E418285" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1184" e_stop="774"/>
          <exon e_start="637" e_stop="499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTCTCTCTTTTTTCCTTTTCTTGATTCTCCCTCTGTAAACCTAACCCAATAATTTCAGTGGCCATTACAGTTCAAGATCTGAGTTTTTCTTAGAAACGAAAAAATGTCTTCTTTTGTGATGTTCTTGCTAACAATAACATTGCTCTCAATTTTCCCATTTCGACAATGTCATGGCCGTCTTTTCACTTTTGAAATGCACCACCGTTTCTCTGAAACTGTCAAGAAGTGGTCACTGCAGAAACTTGCTGCTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTTCAGTATTATACTCAGCTGGCCAACCACGACAGGTTGCTACATGGCAGGAGGCTTTTTAAATTCGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATTGTAAGACCAAACCAAACCCATCTTTTAAATTCCACTTATTGGGAGTATTTTTGTGTTTAATCTTGAAGTTCTTGGTGTTGTCCCTTGGATTCTTGACATTATAGTTTGAATTTGTTTTGGGGGATGAATTTTGCAGCTTGCATTACACCACGGTGACTTTGGGGACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCT</genome_strand>
        <mrna_strand>CGATTT-TCT-TCAACTGTCAAAATTTACTCTCTCCCTCTGTAAACCTAACCCAATTATTTCAGTCGCCATTACAGTTCAAGATCTGAGTTTTTCTTAGAAACGAAA-AATGTCTTCTTTTGTGATTTTCTTG----C--TAACATTGCTCTCAATTTTCCCATTTCGACAATGTCATGGCCGTCTTTTCACTTTTGAAATGCACCACCGTTTCTCTGAAA----C------T-GTCA----AGAAACTTGCTGGTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTCCAGTATTATACTCAGTTGGCCAACCATGATAAGTTGCTACATGGCAGGAGGCTTTTCAAATTTGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATT........................................................................................................................................CTTGCATTACACCACGGTGACTTTGGGAACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706654" ref_strand="+" ref_description="SGN-E706654 [FA30CC05]">
      <seq>tacccattggaaaatcaagacattgatagtttggagaggcctctgattcatgaaaggagttcaactgtgattgctgacaacaatggatttttacacgatgcctctccaaatgaaattgatttccctggacaagatttgtctgaataccctccagtcagccgaacctcaccagttccaaagccgaagtttgattttgcacagtattatgctttcaatctgacaatatttgccctaaccctgatctattgttcgtttgctcctctggtggttcctgttggtgcagtttactttgggtaccggtatttagttgacaagtacaacttcctgtttgtatacagagtgcgaggtttccctgctggtaatgatgggaggttgatggatactgtattatctatcatgaggttttgtgttgacttgttcctcctttcaatgctacttttcttttctgtacgaggagactcaactaagcttcaagccatattcacacttggattgttagtggtgtataaactcttgccctctgataaggattcttttcagccagcgttattacaaggcatacagactattgataacattgtcgaagggccaactgattatgaggttttctcacaacctacatttgattgggatacgtataattcatgacttgtgaataaaaccaaagatttgtgttgacattttgtatatattcttattttgttacggaagtgttcctgcatctatcagatctctctcctcttttcttggttcatccttttggtggttggaaacagatatttggcttangaccacaagagcacatgttataatgtctaacgggttccactgtagtagcacagtctgtatttctacgatcaggtcttgaccaatctacagagtgaatagatgttgtttgtttaccctcacatctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="5673" stop="4157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5373" g_stop="4457" g_length="917"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="917" r_length="917" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E706654" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5373" e_stop="4457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCATTGGAAAATCAAGACATTGATAGTTTGGAGAGGCCTCTGATTCATGAAAGGAGTTCAACTGTGATTGCTGACAACAATGGATTTTTACACGATGCCTCTCCAAATGAAATTGATTTCCCTGGACAAGATTTGTCTGAATACCCTCCAGTCAGCCGAACCTCACCAGTTCCAAAGCCGAAGTTTGATTTTGCACAGTATTATGCTTTCAATCTGACAATATTTGCCCTAACCCTGATCTATTGTTCGTTTGCTCCTCTGGTGGTTCCTGTTGGTGCAGTTTACTTTGGGTACCGGTATTTAGTTGACAAGTACAACTTCCTGTTTGTATACAGAGTGCGAGGTTTCCCTGCTGGTAATGATGGGAGGTTGATGGATACTGTATTATCTATCATGAGGTTTTGTGTTGACTTGTTCCTCCTTTCAATGCTACTTTTCTTTTCTGTACGAGGAGACTCAACTAAGCTTCAAGCCATATTCACACTTGGATTGTTAGTGGTGTATAAACTCTTGCCCTCTGATAAGGATTCTTTTCAGCCAGCGTTATTACAAGGCATACAGACTATTGACAACATTGTCGAAGGGCCAACTGATTATGAGGTTTTCTCACAACCTACATTTGATTGGGATACGTATAATTCATGACTTGTGAATAAAACCAAAGATTTGTGTTGACATTTTGTATATATTCTTATTTTGTTACGGAAGTGTTCCTGCATCTATCAGATCTCTCTCCTCTTTTCTTGGTTCATCCTTTTGGTGGTTGGAAACAGATATTTGGCTTAGGACCACAAGAGCACATGTTATAATGTCTAACGGGTTCCACTGTAGTAGCACAGTCTGTATTTCTACGATCAGGTCTTGACCAATCTACAGAGTGAATAGATGTTGTTTGTTTACCTCAACATCTGCTC</genome_strand>
        <mrna_strand>TACCCATTGGAAAATCAAGACATTGATAGTTTGGAGAGGCCTCTGATTCATGAAAGGAGTTCAACTGTGATTGCTGACAACAATGGATTTTTACACGATGCCTCTCCAAATGAAATTGATTTCCCTGGACAAGATTTGTCTGAATACCCTCCAGTCAGCCGAACCTCACCAGTTCCAAAGCCGAAGTTTGATTTTGCACAGTATTATGCTTTCAATCTGACAATATTTGCCCTAACCCTGATCTATTGTTCGTTTGCTCCTCTGGTGGTTCCTGTTGGTGCAGTTTACTTTGGGTACCGGTATTTAGTTGACAAGTACAACTTCCTGTTTGTATACAGAGTGCGAGGTTTCCCTGCTGGTAATGATGGGAGGTTGATGGATACTGTATTATCTATCATGAGGTTTTGTGTTGACTTGTTCCTCCTTTCAATGCTACTTTTCTTTTCTGTACGAGGAGACTCAACTAAGCTTCAAGCCATATTCACACTTGGATTGTTAGTGGTGTATAAACTCTTGCCCTCTGATAAGGATTCTTTTCAGCCAGCGTTATTACAAGGCATACAGACTATTGATAACATTGTCGAAGGGCCAACTGATTATGAGGTTTTCTCACAACCTACATTTGATTGGGATACGTATAATTCATGACTTGTGAATAAAACCAAAGATTTGTGTTGACATTTTGTATATATTCTTATTTTGTTACGGAAGTGTTCCTGCATCTATCAGATCTCTCTCCTCTTTTCTTGGTTCATCCTTTTGGTGGTTGGAAACAGATATTTGGCTTANGACCACAAGAGCACATGTTATAATGTCTAACGGGTTCCACTGTAGTAGCACAGTCTGTATTTCTACGATCAGGTCTTGACCAATCTACAGAGTGAATAGATGTTGTTTGTTTACCCTCACATCTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373555" ref_strand="+" ref_description="SGN-E373555 [TUS-31-N24]">
      <seq>aagaggaaaaaaaaaattaaaaaagctgcctttttttcttcttttatcttcttcttcatcttcctttccattctcatctcccacattcaactgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggccaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="14653" stop="16327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14953" g_stop="15278" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15279" i_stop="15659" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15660" g_stop="16027" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="694" r_length="368" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E373555" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14953" e_stop="15278"/>
          <exon e_start="15660" e_stop="16027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCC</genome_strand>
        <mrna_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGGGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292110" ref_strand="+" ref_description="SGN-E292110 [cLET-1-I19]">
      <seq>aagaggaaaaaaaaaattaaaaaagctgcctttttttcttcttttatcttcttcttcatcttcctttccattctcatctcccacattcaactgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="14653" stop="16210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14953" g_stop="15278" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15279" i_stop="15659" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15660" g_stop="15910" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="577" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E292110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14953" e_stop="15278"/>
          <exon e_start="15660" e_stop="15910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGT</genome_strand>
        <mrna_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290965" ref_strand="+" ref_description="SGN-E290965 [cLET-8-K8]">
      <seq>aagaggaaaaaggaaattaaaaaagctgcctttatttcttcttttatcttcttcgtcatcttcctttccattctaatgtcccacattcacctgaacaacagatatatagagagaaactggaaaacaaccaactgaaaacgaaaccaccataacaggaaaaagacttaatcttttctctgtattacatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgctgaattgtattttcacactgcgtgattcggcaatattatcccatatagggcctaatcacaactaacaaagggagtagtggcggaagtttttagttgtggagagcagtagcatccattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="14653" stop="16016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14953" g_stop="15278" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15279" i_stop="15659" i_length="381">
            <donor d_prob="0.598" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15660" g_stop="15715" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="382" r_length="56" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E290965" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14953" e_stop="15278"/>
          <exon e_start="15660" e_stop="15715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTG</genome_strand>
        <mrna_strand>AAGAGGAAAAAGGAAATTAAAAAAGCTGCCTTTATTTCTTCTTTTATCTTCTTCGTCATCTTCCTTTCCATTCTAATGTCCCACATTCACCTGAACAACAGATATATAGAGAGAAACTGGAAAACAACCAACTGAAAACGAAACCACCATAACAGGAAAAAGACTTAATCTTTTCTCTGTATTACATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGCTGAATTGTATTTTCACACTGCGTGATTCGGCAATATTATCCCATATAGGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGCGGAAGTTTTTAGTTGTGGAGAGCAGTAGCATCCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268041" ref_strand="+" ref_description="SGN-E268041 [cLEI-15-J17]">
      <seq>aattaaaaaagctgcctttttttcttcttttatcttcttcttcatcttcctttccattctcatctcccacattcaactgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="14667" stop="16209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14967" g_stop="15278" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15279" i_stop="15659" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15660" g_stop="15909" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="562" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E268041" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14967" e_stop="15278"/>
          <exon e_start="15660" e_stop="15909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAG</genome_strand>
        <mrna_strand>AATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407284" ref_strand="+" ref_description="SGN-E407284 [PPI-6-J3]">
      <seq>cttttcttcttcttgtatcttcttcatcttcctttccattctcatctcccacacacattcaactgaaaaacaaatatatatagagagaaaaaggaaaaacaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattcgcataaactctgattgatctttaatggatctgtagatctaacgtttattggctacgttttattgtcattttcacactctgtggttcagtaattgaccggaaattataccatataaggcctaaatacaactaacaaagggagtagtggtgaaagtttttagttttggagagctgctgcatccgtttggatgtcgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtggtacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggccaacaatttgctggaggatcaaagccagaattgagtcgggttctttgagcttgcttgattctggcccatatgggaacgtttgttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="14686" stop="16304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14985" g_stop="15278" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.837"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15279" i_stop="15659" i_length="381">
            <donor d_prob="0.598" d_score="0.49"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15660" g_stop="16004" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="657" r_length="347" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E407284" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14985" e_stop="15278"/>
          <exon e_start="15660" e_stop="16004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCT-CC-CA--CATTCAACTGAAAAAC--AGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGT-ATTTTCACACTGTGTGATTCAGTAA-T--------ATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAG-ATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATAT-GGAACGTTTGTTGGG</genome_strand>
        <mrna_strand>CTTTTCTTCTTCTTGTATCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACACACATTCAACTGAAAAACAAATATATATAGAGAGAAAAAGGAAAAACAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCGCATAAACTCTGATTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTTATTGTCATTTTCACACTCTGTGGTTCAGTAATTGACCGGAAATTATACCATATAAGGCCTAAATACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGAAAGTTTTTAGTTTTGGAGAGCTGCTGCATCCGTTTGGATGTCGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGGTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAAAGCCAGAATTGAGTCGGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGGAACGTTTGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347470" ref_strand="+" ref_description="SGN-E347470 [cTOF-33-P15]">
      <seq>actgaaaaacagatatatagagagaaaaaggaaaacaaaaaactgaaaaagaaaccaacaaaacaggaaaaagacttaatcttttctctgtatttcatattctttaaccgtatattctcataaactctggttgatctttaatggatctgtagatctaacgtttattggctacgtttaattgtattttcacactgtgtgattcagtaatattataccatataaggcctaatcacaactaacaaagggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaagttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcatgccaacaatttgctggaggatcagagccagattgagtcaagttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatagggtcatggtgggcctgaaacatcacggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaattccatgtctgttgatgtaatacgaaaagcgtttcaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="14742" stop="16603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15042" g_stop="15278" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15279" i_stop="15659" i_length="381">
            <donor d_prob="0.598" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15660" g_stop="16074" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="654" r_length="417" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16075" i_stop="16244" i_length="170">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16245" g_stop="16303" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="712" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E347470" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15042" e_stop="15278"/>
          <exon e_start="15660" e_stop="16074"/>
          <exon e_start="16245" e_stop="16303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACTGTGAGTCTTCTTTTTTTTTTCATCTTTATTTAGGAGAGAAATTGTTAAAGATGTGAAGTTGGTATGGTTTTTATGTTCTCTTTGAGTTTTAACTGTTCTTTTGTTCATTTTGCACTTATGGTTTCACTGGGTTTTGGTTTTTACAATCTTGAAATTGACCCCTTTTTGTTTTGGACGGTAATGGGTTAGTTTGACTCTGCTTTTTGCCCTAAGTTGTTTTCAAATCTTGGGAGTTTTGTTCTTGCTGTTGAAATTAGAATTATGGGCTTTGTTTAAGCATACTGTCTTGTTTAAATCTTGGGGTTTGTTGATAAAGTTATGATCTTGGTGAAGTTATTGTCTAGTTGAATCTCTTGTTATATGGTTGTTTCCAATTTGCAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGAT--GGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCA</genome_strand>
        <mrna_strand>ACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT.............................................................................................................................................................................................................................................................................................................................................................................................AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAAGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCATGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAAGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATAGGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAAC-AAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691599" ref_strand="+" ref_description="SGN-E691599 [LH_Ea06I13]">
      <seq>ccgtaaaagggagtagtggtggaagtttttagttttggagacctgttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggctaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggtgggcctgaaacgtcgcggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaaattccatgtctgttgatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagctgagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaaacataatgtatggcgtgtaaaggggtttgatacaaatttcgagatctattggcgattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="15357" stop="17384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15657" g_stop="16074" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16075" i_stop="16244" i_length="170">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16245" g_stop="16612" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="786" r_length="369" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16613" i_stop="17060" i_length="448">
            <donor d_prob="0.936" d_score="0.90"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17061" g_stop="17084" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="810" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E691599" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15657" e_stop="16074"/>
          <exon e_start="16245" e_stop="16612"/>
          <exon e_start="17061" e_stop="17084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAA-GGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTA</genome_strand>
        <mrna_strand>CCGTA-AAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGACCTGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCTAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACGTCGCGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAACATAATGTATGGCGTGTAAAGGGGTTTGATACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745208" ref_strand="+" ref_description="SGN-E745208 [GI|47105838]">
      <seq>agggagtagtggtggaagtttttagttttggagagcagttgcatccatttggatgttgaggaattggcggtaagcaaaggtgaaatgagggatgttatcaaggttgataaatttcttgaaggcatgttgccggtcatcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggccaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggtgggcctgaaacatcacggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaaattccatgtctgttgatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagctgagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttctttcttgaggacaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="15365" stop="18824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15665" g_stop="16074" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16075" i_stop="16244" i_length="170">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16245" g_stop="16612" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="778" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16613" i_stop="17060" i_length="448">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17061" g_stop="17297" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="1015" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18037" g_stop="18518" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1016" r_stop="1497" r_length="482" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1498" polyA_stop="1521"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E745208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1497</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15665" e_stop="16074"/>
          <exon e_start="16245" e_stop="16612"/>
          <exon e_start="17061" e_stop="17297"/>
          <exon e_start="18037" e_stop="18518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGG</genome_strand>
        <mrna_strand>AGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730196" ref_strand="+" ref_description="SGN-E730196 [LA23BE02]">
      <seq>aatttcttgaaggcatgttgccggccttcggcggatcgttatgtacatagtgctacagattcagctggacggcaagatggacttttttggtataaggacagtggacaacacttacttggtgagttctctatggcagttgttcaggccaacaatttgctggaggatcagagccagattgagtcaggttctttgagcttgcttgattctggcccatatggaacgtttgttggggtatatgatggtcatggtgggcctgaaacatcacggtatatcaatgatcacctctttcagaatctcaagaggtctgcagctgaacaaaattccatgtctgttgatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="15474" stop="16756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15774" g_stop="16074" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16075" i_stop="16244" i_length="170">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16245" g_stop="16456" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="513" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E730196" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15774" e_stop="16074"/>
          <exon e_start="16245" e_stop="16456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGAGTAAGCATATTGAATATTTTATTTTATAAAACTAAACTGCTAATCTGCCAACTGCCAAGTATTAAGTTGCATAAGTTGATTGGTAGTACAGGGAAGCATGCCGGATAGTGTTTGTTGAATTAGTAGTTTGATAGCTTGATCTTGATTACACTGCAACTTAAATATTGCAGGGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTT</genome_strand>
        <mrna_strand>AATTTCTTGAAGGCATGTTGCCGGCCTTCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA..........................................................................................................................................................................GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462003" ref_strand="+" ref_description="SGN-E462003 [cPRO-10-E2]">
      <seq>gctgaacaaaattccatgtctgtagatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagcagagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttttgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacaaggcccatattgagtgcggatccagcggtttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="15953" stop="18412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16253" g_stop="16612" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16613" i_stop="17060" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17061" g_stop="17297" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="597" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18037" g_stop="18112" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="673" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E462003" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16253" e_stop="16612"/>
          <exon e_start="17061" e_stop="17297"/>
          <exon e_start="18037" e_stop="18112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAA</genome_strand>
        <mrna_strand>GCTGAACAAAATTCCATGTCTGTAGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCAGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTTTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACAAGGCCCATATTGAGTGCGGATCCAGCGGTTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430517" ref_strand="+" ref_description="SGN-E430517 [STM-53-F18]">
      <seq>gctgaacaaaattccatgtctgtagatgtaatacgaaaagcgtttcaagcaacagaggagggattcatttctctagttgctcagcagtggctaacgaaacctcagatggcttctgttggagcatgctgtctggttggggtgatctgtgatgggaccctttatgttgccaaccttggtgattcccgggctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagcagagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttttgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacaaggcccatattgagtgcggatccagcggtttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="15953" stop="17533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16253" g_stop="16612" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16613" i_stop="17060" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17061" g_stop="17233" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="533" r_length="173" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E430517" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16253" e_stop="16612"/>
          <exon e_start="17061" e_stop="17233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGA</genome_strand>
        <mrna_strand>GCTGAACAAAATTCCATGTCTGTAGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCAGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTTTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACAAGGCCCATATTGAGTGCGGATCCAGCGGTTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465636" ref_strand="+" ref_description="SGN-E465636 [cPRO-21-D6]">
      <seq>gctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagcagagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttttgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacaaggcccatattgagtgcggatccagcggtttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagcagagccagctcacttagagggccctctgtatctctgagaggaggtggtatgaacttnccagcgnaaagtctggctcccactcccacgtaacttggtactgcttgacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16139" stop="18605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16439" g_stop="16612" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16613" i_stop="17060" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17061" g_stop="17297" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="411" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18037" g_stop="18306" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="681" r_length="270" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E465636" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16439" e_stop="16612"/>
          <exon e_start="17061" e_stop="17297"/>
          <exon e_start="18037" e_stop="18306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTC</genome_strand>
        <mrna_strand>GCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCAGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTTTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACAAGGCCCATATTGAGTGCGGATCCAGCGGTTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGCAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAGAGGAGGTGGTATGAACTTNCCAGCGNAAAGTCTGGCTCCCACTCCCACGTAACTTGGTACTGCTTGACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465054" ref_strand="+" ref_description="SGN-E465054 [cPRO-19-P12]">
      <seq>gctgttttggggagacttgtcagggctacaggagaggttctagcccttcagctttcagcagagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttttgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacaaggcccatattgagtgcggatccagcggtttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16139" stop="18494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16439" g_stop="16612" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16613" i_stop="17060" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17061" g_stop="17297" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="411" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18037" g_stop="18195" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="570" r_length="159" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E465054" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16439" e_stop="16612"/>
          <exon e_start="17061" e_stop="17297"/>
          <exon e_start="18037" e_stop="18195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGT</genome_strand>
        <mrna_strand>GCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCAGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTTTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACAAGGCCCATATTGAGTGCGGATCCAGCGGTTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465402" ref_strand="+" ref_description="SGN-E465402 [cPRO-21-C5]">
      <seq>gctgttttggggagacttgtcagggctacaggagaggttcttgcccttcagctttcagcagagcataatgcaagtattgagtctgtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttttgaagcataatgtatggcgtgtaaagggtctgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacaaggcccatattgagtgcggatccagcggtttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctgacgggctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaaattgatcgtggtgtgaggagacattttcctgatgatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16139" stop="18457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16439" g_stop="16612" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16613" i_stop="17060" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17061" g_stop="17297" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="411" r_length="237" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18037" g_stop="18157" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="531" r_length="120" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E465402" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16439" e_stop="16612"/>
          <exon e_start="17061" e_stop="17297"/>
          <exon e_start="18037" e_stop="18157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCT</genome_strand>
        <mrna_strand>GCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTTGCCCTTCAGCTTTCAGCAGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTTTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACAAGGCCCATATTGAGTGCGGATCCAGCGGTTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGACGGGCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAA-ATTGATCGTGGTGTGAGGAGACATTTTCCTGATGATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577872" ref_strand="-" ref_description="SGN-E577872 [LE08AG03]">
      <seq>ttttgtgtgtgtaaaatttaagtcagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaagcataatgtatggcgtgtaaagggtctgatacacatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttgtcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaaacggcaaagaaaagagagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagaaccagctcacttagagggccctctgtatctctgaaagtaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtaactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcagtaatttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16223" stop="18705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16520" g_stop="16612" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="111" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16613" i_stop="17060" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17061" g_stop="17297" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="348" r_length="237" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18037" g_stop="18408" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="719" r_length="371" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E577872" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577872" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16520" e_stop="16612"/>
          <exon e_start="17061" e_stop="17297"/>
          <exon e_start="18037" e_stop="18408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTC</genome_strand>
        <mrna_strand>TAAGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTGTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAACGGCAAAGAAAAGAGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAACCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGTAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTA-ACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCAGTAATTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695439" ref_strand="+" ref_description="SGN-E695439 [LH_Ea06I13](-)">
      <seq>cagacaggaattgcattctatgcatccggatgacccacagatagtcgttctgaagcataatgtatggcgtgtaaagggtttgatacagatttcgagatctattggcgatttatatctcaaaaatgctgagtacaataaagagccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattttgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtagtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctttgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccacataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggccctaatttattcttttgttgtgcaatgtaatgtttttgatgttcaaggtaacgtttaacttggaacagagtctttattaactttaaagggaggcaagaagatcaaattttctttctgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16225" stop="18824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16525" g_stop="16612" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16613" i_stop="17060" i_length="448">
            <donor d_prob="0.936" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17061" g_stop="17297" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="325" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18037" g_stop="18527" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="815" r_length="490" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E695439" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16525" e_stop="16612"/>
          <exon e_start="17061" e_stop="17297"/>
          <exon e_start="18037" e_stop="18527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAGGTATGTTTTTGACAATGGTAACAAGGCGTGCTCTAGACTCTAGTTTGCTAGTGTATAGTCTCATCTTGCCTCTTAGTTAAATGCAAAAATCATTATTGCACTCGTGTTCTATTCTCATTCATTTGCAGGTTGCCAAGTGTATACTGACTTTTGTCTTAGTACTTTACACTCCCTGAAGCTGAAGTGAATTATAAGCCTGTAAATTGTTTCCCCAGTTGTGTCTGTCTTTTTGATACCCCAAATACATTATCCTTCTGTTCTGGTTTGCTTAACGAGGAATGGATGGAGTATTAAACTTCCAATTGTATTATCTAACCGCATGGCTAGGTTTTTATCCTGCATTATGTGCTGGATTCCTGTTTTTCTAATTAATTTGTATCTTTACCTCGCTGAACATGTATTTGCTGTTTTGAGAATGTTTTTAATATTTCATATATTAATCTGTCAGATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTT</genome_strand>
        <mrna_strand>CAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTTTGATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTTTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTAGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTTTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCACATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCCCTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAAGGTAACGTTTAACTTGGAACAGA-GTCTTTATTAACTTTAAAGGGAGGCAAGAAGATCAAATTTTCTTTCTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E373554" ref_strand="+" ref_description="SGN-E373554 [TUS-31-N24](-)">
      <seq>gccattgtatgcaaaatttcgtttgcgagaaccttttacgaggcccatattgagtgcggatccagcgatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttcttttttgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16814" stop="18824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17114" g_stop="17297" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18037" g_stop="18526" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="674" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E373554" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17114" e_stop="17297"/>
          <exon e_start="18037" e_stop="18526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACT</genome_strand>
        <mrna_strand>GCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTTTTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421112" ref_strand="-" ref_description="SGN-E421112 [STM-32-E18]">
      <seq>tccagcggtttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagcagagccagctcacttagagggccctctgtatctctgagaggaggtggtatgaacttcccagcgaaaagtctggctcccactcccacgtaacttggtactgcttgaccttttcactgtgttgtatactttgctgtatcctttctgaaacttcttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtaatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttattagtaggcaagaagatcaaattttctttcttgaggatgaacttctatgcttatattctatcaattttactttctcacttttctgtggtaaatgtaaatgaacgcctctcatttgaacccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16874" stop="18913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17174" g_stop="17297" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18037" g_stop="18614" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="700" r_length="576" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E421112" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421112" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17174" e_stop="17297"/>
          <exon e_start="18037" e_stop="18614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCTCTGCTTATATTCTATCAATTTTACTTGCTCACTTTTCTGTGGTAAATGTAAATGAATGCCTCTCATTTTGAACCCATAACGACAG</genome_strand>
        <mrna_strand>TCCAGCGGTTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGCAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAGAGGAGGTGGTATGAACTTCCCAGCGAAAAGTCTGGCTCCCACTCCCACGTAACTTGGTACTGCTTGACCTTTTCACTGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTCTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATTAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATG-AACTTCTATGCTTATATTCTATCAATTTTACTTTCTCACTTTTCTGTGGTAAATGTAAATGAACGCCTCTCA-TTTGAACCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231128" ref_strand="+" ref_description="SGN-E231128 [cLED-5-C17]">
      <seq>gatttcagtgcatgaactccagccacatgatcaatttctcatccttgcttccgacggtctttgggaacatcttagcaatcaagaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16880" stop="18778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17180" g_stop="17297" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18037" g_stop="18478" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="560" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E231128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17180" e_stop="17297"/>
          <exon e_start="18037" e_stop="18478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAAC</genome_strand>
        <mrna_strand>GATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430518" ref_strand="-" ref_description="SGN-E430518 [STM-53-F18]">
      <seq>ttcagtgcatgaactccagccacatgatcaatttctcatccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagcagagccagctcacttagagggccctctgtatctctgagaggaggtggtatgaacttcccagcgaaaagtctggctcccactcccacgtaacttggtactgcttgaccttttcactgtgttgtatactttgctgtatcctttctgaaacttcttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtaatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttattagtaggcaaataaatcaaattttctttctgaaaaaaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16883" stop="18816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17183" g_stop="17297" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18037" g_stop="18529" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="605" r_length="490" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E430518" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430518" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17183" e_stop="17297"/>
          <exon e_start="18037" e_stop="18529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCT</genome_strand>
        <mrna_strand>TTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGCAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAGAGGAGGTGGTATGAACTTCCCAGCGAAAAGTCTGGCTCCCACTCCCACGTAACTTGGTACTGCTTGACCTTTTCACTGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTCTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATTAGTAGGCAAATAAATCAAATTTTCTTTC-TGA--AAAAAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449594" ref_strand="+" ref_description="SGN-E449594 [cSTS-6-P14]">
      <seq>aatctttgaaatttctcatccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcggtcatagttgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgagaggaggtggtatgaacttcccagcaaaaaatctggcttccactcccacataacttggtactgcttgaccttttcactgtgttgtatactttgctgtatcctttctgaaacttcttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtaatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttattagtaggcaagaagatcaaattttctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16912" stop="18811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17203" g_stop="17297" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18037" g_stop="18521" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="580" r_length="485" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E449594" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17203" e_stop="17297"/>
          <exon e_start="18037" e_stop="18521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATG</genome_strand>
        <mrna_strand>AATCTTTGAAATTTCTCATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCGGTCATAGTTGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAGAGGAGGTGGTATGAACTTCCCAGCAAAAAATCTGGCTTCCACTCCCACATAACTTGGTACTGCTTGACCTTTTCACTGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTCTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATTAGTAGGCAAGAAGATCAAATTTTCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452577" ref_strand="-" ref_description="SGN-E452577 [cSTS-17-C16]">
      <seq>catccttgcttctgacggtctttgggaacatcttagcaatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcggtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgagaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccacataacttggtactgctttgtctactttgctgtatcctttctgaaacttcttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtaatgtttttgatgttcaatgtaatgtttaacttggaacagacgtctttattaacttgattagtaggcaagaagatcaaattttctttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16919" stop="18812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17219" g_stop="17297" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18037" g_stop="18512" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="539" r_length="460" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="556"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E452577" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452577" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17219" e_stop="17297"/>
          <exon e_start="18037" e_stop="18512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTC</genome_strand>
        <mrna_strand>CATCCTTGCTTCTGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCGGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAGAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCACATAACTTGGTACTGCTT----TGT---C--T-------ACTTTGCTGTATCCTTTCTGAAACTTCTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAATGTAATGTTTAACTTGGAACAGACGTCTTTATTAACTTGATTAGTAGGCAAGAAGATCAAATTTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413089" ref_strand="-" ref_description="SGN-E413089 [STM-17-G10]">
      <seq>aatcaagaggccgttgatattgtccaaaatagctctcgcaaaggaagtgctcggcggcttgtaaaagctgccctgcaagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagcagagccagctcacttagagggccctctgtatctttgagaggaggtggtatgaacttcccagcgaaaagtttggctcccactcccacgtaacttggtactgcttgaccttttcactgtgttgtatactttgctgtatcctttctgaaacttcttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggccctaatttattcttttgttgtgcaatgtaatgtttttgatgttccatgtaaaggaaaaaaaaaaaaaaaaaaacccatattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16956" stop="18749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17256" g_stop="17297" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18037" g_stop="18448" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="454" r_length="412" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="476"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E413089" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413089" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17256" e_stop="17297"/>
          <exon e_start="18037" e_stop="18448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAAC</genome_strand>
        <mrna_strand>AATCAAGAGGCCGTTGATATTGTCCAAAATAGCTCTCGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCCCTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGCAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTTTGAGAGGAGGTGGTATGAACTTCCCAGCGAAAAGTTTGGCTCCCACTCCCACGTAACTTGGTACTGCTTGACCTTTTCACTGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTCTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCCCTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCCATGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354065" ref_strand="+" ref_description="SGN-E354065 [cTOS-16-K24]">
      <seq>agaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttctttcttgaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16961" stop="18824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17261" g_stop="17297" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18037" g_stop="18529" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="530" r_length="493" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E354065" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17261" e_stop="17297"/>
          <exon e_start="18037" e_stop="18529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCT</genome_strand>
        <mrna_strand>AGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292300" ref_strand="+" ref_description="SGN-E292300 [cLET-1-I19](-)">
      <seq>gaggcagttgatattgtccaaaatagctctcacaaaggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgagcagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtatggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtgatgtttttgatgttcaatgtaacgtttaacttggaacagacgtctttattaactttataagtaggcaagaagatcaaattttctttcttgagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="16962" stop="18824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17262" g_stop="17297" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18037" g_stop="18526" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="526" r_length="490" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E292300" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17262" e_stop="17297"/>
          <exon e_start="18037" e_stop="18526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAAGTATGATCCTTCACTTGAAAGCATAAAATTTCTTATTCTTTTATTTCTCAAAATTATTTATTTAATGTCATGGATTGAAAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACT</genome_strand>
        <mrna_strand>GAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGCAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTATGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270424" ref_strand="+" ref_description="SGN-E270424 [cLEM-1-M23]">
      <seq>gggttggtctgattttccttaggcagtcctgtttatattttaagcacattacaaactcacgtagcctggtagttcttttctttgctaatcaccgcattattgcactgaaagctttaattataatttactccccccttttggttatacacagttacattgcatcttaaaaaaattacatcatttaacatcatgtgcagatttagagagcagattatttcggtaattacatcttgtagtcactaattatattgctcgtaaaaagcacaatgcggtagaaatgttccatgtctttgacataccagaaacaaattgaactcctattcttagatactcatctatagtcaataaaaagcaaaattatgtgtaccacgagcacacccatttgacgaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="17078" stop="18069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17376" g_stop="17769" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E270424" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17376" e_stop="17769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACA</genome_strand>
        <mrna_strand>GGGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAAGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370921" ref_strand="+" ref_description="SGN-E370921 [TUS-27-H17]">
      <seq>ttggtctgattttccttaggcagtcctgtttatattttaagcacattacaaactcacgtagcctggtagttcttttctttgctaatcaccgcattattgcactgaaagctttaattataatttactccccccttttggttatacacagttacattgcatcttaaaaaaattacatcatttaacatcatgtgcagatttagagagcagattatttcggtaattacatcttgtagtcactaattatattgctcgtaaaaagcacaatgcggtagaaatgttccatgtctttgacataccagaaacaaattgaactcctattcttagatactcatctatagtcaataaaaggcaaaattatgtgtaccacgagcacacccatttgacgaaaacattagtttacttaacaaaagctatcagattagcgaacgacaattactttgtgaagtatgaaaaatggaaataagaaacttcaaagttcattcttcggatgcttgaatggaagtacacagggcttatacttccctgtcaaattccctttcgtgtatgttgttccgtgtgttgccatcatgaataagggttgaggttcatctgaatgttgatggatttcaatgttgagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="17079" stop="18298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17379" g_stop="17998" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E370921" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17379" e_stop="17998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTA</genome_strand>
        <mrna_strand>TTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370920" ref_strand="+" ref_description="SGN-E370920 [TUS-27-H17](-)">
      <seq>cacacccatttgacgaaaacattagtttacttaacaaaagctatcagattagcgaacgacaattactttgtgaagtatgaaaaatggaaataagaaacttcaaagttcattcttcggatgcttgaatggaagtacacagggcttatacttccctgtcaaattccctttcgtgtatgttgttccgtgtgttgccatcatgaataagggttgaggttcatctgaatgttgatggatttcaatgttgagcttattaggaaagtaactacattttctatattcattcttcagggaagtgctcggcggcttgtaaaagctgcactgcaagaagcggcaaagaaaagggagatgagatattctgatttaaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcagtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgaaaggaggtggtatgaacttcccagcaaaaagtctggctcccactcccgcataacttggtactgcttgacctttccacagtgttgtatactttgctgtatcctttctgaaacttgttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="17449" stop="18721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17749" g_stop="18428" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E370920" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17749" e_stop="18428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATG</genome_strand>
        <mrna_strand>CACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E413828" ref_strand="-" ref_description="SGN-E413828 [STM-18-D5]">
      <seq>aagaagcggcaaagaaaagggagatgagatattctgatctgaagaagattgatcgtggtgtgaggagacattttcatgatgatatctcggtcatagtcgtgtttcttgattcaaatcttgtgagtagagccagctcacttagagggccctctgtatctctgagaggaggtggtatgaacttcccagcaaaaaagtctggctcccactcccacataacttggtactgctttgtctactttgctgtatcctttctgaaacttcttatgacaagatcctttagtagattaaagagaaataacagaaagtgcggcactaatttattcttttgttgtgcaatgtaatgtttttgatgttcaatgtaatgtttaacttggaacagacgtctttattaacttgattagtaggcaagaagatcaaattttctttcagtataaaaaaaaaaaggttttaaaaaactcgagggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="17771" stop="18812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18071" g_stop="18512" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="443"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E413828" ref_strand="-">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413828" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18071" e_stop="18512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGC-AAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTC</genome_strand>
        <mrna_strand>AAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATCTGAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCGGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAGAGGAGGTGGTATGAACTTCCCAGCAAAAAAGTCTGGCTCCCACTCCCACATAACTTGGTA---C-TG---------C--T-TTGTCTACTTTGCTGTATCCTTTCTGAAACTTCTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTAATGTTTTTGATGTTCAATGTAATGTTTAACTTGGAACAGACGTCTTTATTAACTTGATTAGTAGGCAAGAAGATCAAATTTTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372194" ref_strand="+" ref_description="SGN-E372194 [TUS-30-P10](-)">
      <seq>attcaggatcggattccagcacaaaaataagagtgacactacaaaatggggaaatgttggaaagtgaatttggggtaatattggcagttgaagagcctgaagctgtcaagttgttggcgggagaaaaaaccggtgaggttcggcaaccggttcggagcacagtatgtttgtatttttcagctgaccaaggcaaagttccggtgcaggatccggttcttcttcttaacggatcgggtaaaggtatcgttaataacatgttcttcgcgaccaatgtggctccctcttatgctccggcagggaaggcactggtttctgtcacgcttgtggggctttatggtgatgtggcagatgaggatttggtggatcgggtcgtgaaggagctatcgggttggtttggggagtcggtagttgggtcatggggttacttgaggatgtacaggatcgggtttgcccaaccgaaccaatgcccacccactaacttgaagaagaacccgaaagtgaaaccgggcttgtacatttgtggagattatgtgactagcgctacttttgatggagctttagtttctgggaaaaaagcagcagaaactttgttacaagataaagctctggttattgtatagcttaattttggtttgagttttttttccacttgtgtaaaagtagaagttttgaatgttgttgatttatttgtatatggaatcataaacgtttcgagatcatttacatgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="22981" stop="21649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22681" g_stop="21945" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E372194" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22681" e_stop="21945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTTCAGCTGACCAAGGCAAAGTTCCGGTGCAGGATCCGGTTCTTCTTCTTAACGGATCGGGTAAAGGTATCGTTAATAACATGTTCTTCGCGACCAATGTGGCTCCCTCTTATGCTCCGGCAGGGAAGGCACTGGTTTCTGTCACGCTTGTGGGGCTTTATGGTGATGTGGCAGATGAGGATTTGGTGGATCGGGTCGTGAAGGAGCTATCGGGTTGGTTTGGGGAGTCGGTAGTTGGGTCATGGGGTTACTTGAGGATGTACAGGATCGGGTTTGCCCAACCGAACCAATGCCCACCCACTAACTTGAAGAAGAACCCGAAAGTGAAACCGGGCTTGTACATTTGTGGAGATTATGTGACTAGCGCTACTTTTGATGGAGCTTTAGTTTCTGGGAAAAAAGCAGCAGAAACTTTGTTACAAGATAAAGCTCTGGTTATTGTATAGCTTAATTTTGGTTTGAGTTTTTTTTCCACTTGTGTAAAAGTAGAAGTTTTGAATGTTGTTGATTTATTTGTATATGGAATCATAAACGTTTCGAGATCATTTACATGCAATAATTGT</genome_strand>
        <mrna_strand>ATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTTCAGCTGACCAAGGCAAAGTTCCGGTGCAGGATCCGGTTCTTCTTCTTAACGGATCGGGTAAAGGTATCGTTAATAACATGTTCTTCGCGACCAATGTGGCTCCCTCTTATGCTCCGGCAGGGAAGGCACTGGTTTCTGTCACGCTTGTGGGGCTTTATGGTGATGTGGCAGATGAGGATTTGGTGGATCGGGTCGTGAAGGAGCTATCGGGTTGGTTTGGGGAGTCGGTAGTTGGGTCATGGGGTTACTTGAGGATGTACAGGATCGGGTTTGCCCAACCGAACCAATGCCCACCCACTAACTTGAAGAAGAACCCGAAAGTGAAACCGGGCTTGTACATTTGTGGAGATTATGTGACTAGCGCTACTTTTGATGGAGCTTTAGTTTCTGGGAAAAAAGCAGCAGAAACTTTGTTACAAGATAAAGCTCTGGTTATTGTATAGCTTAATTTTGGTTTGAGTTTTTTTTCCACTTGTGTAAAAGTAGAAGTTTTGAATGTTGTTGATTTATTTGTATATGGAATCATAAACGTTTCGAGATCATTTACATGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731517" ref_strand="+" ref_description="SGN-E731517 [LA27BE07]">
      <seq>gtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggtttccagattttcattactggttatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgatgaagaacctacgatgaatttattaaagaagatcggtttttctgatgcaatattggaaaggttctttcgaccgttttttggtggaattttcttcgatagagagcttgaaacaacgtcgcggctgttcaatttcatcttcaaatgcctagctcttggtgacaacacacttccggcgaagggcattgcggccattccggaacagttggcggcaaaactgccgtcgaattcaatattgttcaatacacgtgttgtttccgttgattcaggatcggattccagcacaaaaataagagtgacactacaaaatggggaaatgttggaaagtgaatttggggtaatattggcagttgaagagcctgaagctgtcaagttgttggcgggagaaaaaaccggtgaggttcggcaaccggttcggagcacagtatgtttgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="23545" stop="22205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23245" g_stop="22505" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="741" r_length="741" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E731517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23245" e_stop="22505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTT</genome_strand>
        <mrna_strand>GTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730119" ref_strand="+" ref_description="SGN-E730119 [LA23AE05]">
      <seq>ctgccttcccgccactctccctcacccttcctcaactcttttctccacgcgccgccgcttcccactactaaaaccgccgtatgcttcctcaaatatacccgttggctcaacttctcagcctaataccaccggagtcattgtcatcggcggcggtttagctggcctagcagctgccattcggcttcaagctgacaacatcccctttctccttctcgaagcttctgatgccgttggtggtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggtttccagattttcattactggttatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgatgaagaacctacgatgaatttattaaagaagatcggtttttctgatgcaatattggaaaggttctttcgaccgttttttggtggaattttcttcgatagagagcttgaaacaacgtcgcggctgttcaatttcatcttcaaatgcctagctcttggtgacaacacacttccggcgaagggcattgcggccattccggaacagttggcggcaaaactgccgtcgaattcaatattgttcaatacacgtgttgtttccgttgattcaagatcggattccagcacaaaaataagagtgacacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="23781" stop="22341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23481" g_stop="22641" g_length="841"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="841" r_length="841" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E730119" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23481" e_stop="22641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCTTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTA</genome_strand>
        <mrna_strand>CTGCCTTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAAGATCGGATTCCAGCACAAAAATAAGAGTGACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372195" ref_strand="+" ref_description="SGN-E372195 [TUS-30-P10]">
      <seq>ttcccgccactctccctcacccttcctcaactcttttctccacgcgccgccgcttcccactactaaaaccgccgtatgcttcctcaaatatacccgttggctcaacttctcagcctaataccaccggagtcattgtcatcggcggcggtttagctggcctagcagctgccattcggcttcaagctgacaacatcccctttctccttctcgaagcttctgatgccgttggtggtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggtttccagattttcattactggttatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgatgaagaacctacgatgaatttattaaagaagatcggtttttctgatgcaatattggaaaggttctttcgaccgttttttggtggaattttcttcgatagagagcttgaaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="23776" stop="22528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23476" g_stop="22828" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E372195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23476" e_stop="22828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAAC</genome_strand>
        <mrna_strand>TTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289322" ref_strand="+" ref_description="SGN-E289322 [cLES-18-B24]">
      <seq>actctccctcacccttcctcaactcttttctccacgcgccgccgctttccactactaaaaccgccgtatgcttcctcaaatatacccgttggctcaacttctcagcctaataccaccggagtcattgtcatcggcggcggtttagctggcctagcagctgccattcggcttcaagctgacaacatcccctttctccttctcgaagcttctgatgccgttggtggtcgcgttcggtccgatgtagttgacggatatacccttgatcgtggcttccagattttcattactggctatcctgaagcccgaaaagtccttgattatgactctttagacctcagaaaattctattcgggggctcaggtttactatggtggtcgtttccacaccgttgctgatcctctccggcatttcgcagatgcactgcaatctttaactaacccaattggttcagttgtggataaattacttataggattgactagattgaaagttttgacgcaaggtgatgatgaaatattgagtgctgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="23768" stop="22638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23468" g_stop="22938" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E289322" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23468" e_stop="22938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAA</genome_strand>
        <mrna_strand>ACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTTCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGCTTCCAGATTTTCATTACTGGCTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594578" ref_strand="+" ref_description="SGN-E594578 [37832]">
      <seq>cgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacaaagtcagatgggagccattgatactgcatacgacgagttccctaacattttcgatgtaggcggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattctggagagagagtctcctgttcagtctgcctacaggtaagacacatttataccttttgttttgctattctattgtctgttattgaattacttaattgattctgaacgctgttctctgtttctatctttccaggactttcaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccgtgcatcgatacatggctgttgagacatggatcttgtccattgtgcagaagggatctgtaggtgactgtactctgtaaattataacgcggttattttatttcctcatacttggctgtaggatttctctatttctttgtcctcgcttgtaccaattttcctgaaaatataatgtaaattagagttgggctcctttgagcttgatcattgtagttgtttaccaccatgtatagaattttgagcaatcttagtgtaaaacaaaacaacaaaaaagagcacacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="26442" stop="25111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26142" g_stop="26070" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26069" i_stop="25991" i_length="79">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25990" g_stop="25412" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="652" r_length="579" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25411" i_stop="25166" i_length="246">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.867" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25165" g_stop="25161" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="657" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E594578" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26142" e_stop="26070"/>
          <exon e_start="25990" e_stop="25412"/>
          <exon e_start="25165" e_stop="25161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTC-TTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTCCTTTGAGCTTTGATCGTTGTAGTTGTTTACCACTATGTATAGAATTTTGAGCAATTTTAGTGTATTCTACTTCCTCAGAATAGCACTTTGTATTACTGTGCCTTTTGCTTTGCATTCGCCTTGTGCAAGATAACGTCTACCTTGATCTTGATTGACTTAACAAGACATCTGCAATTCTCCTCTTAGACAAGGTCCTTTGATTCTTTGAACCGAGTTGTCTATTGGAAACAACCTCTTTACGTAGGGGATAAGGTCCTACATCCTATCCTACTTCTGAGATTGCACTTGGGTATGTTGTTATTGTTGTAGATAAG</genome_strand>
        <mrna_strand>CGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAAAGTCAG...............................................................................ATGGGAGCCATTGATACTGCATACGACGAGTTCCCTAACATTTTCGATGTAGGCGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCTGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACCTTTTGTTTTGCTATTCTATTGTCTGTTATTGAATTACTTAATTGATTCTGAACGCTGTTCTCTGTTTCTATCTTTCCAGGACTTTCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCGTGCATCGATACATGGCTGTTGAGACATGGATCTTGTCCATTGTGCAGAAGGGATCTGTAGGTGACTGTACTCTGTAAATTATAACGCGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAAATTAGAGTTGGGCTCCTTTGAGC-TTGATCATTGTAGTTGTTTACCACCATGTATAGAATTTTGAGCAATCTTAGTGT......................................................................................................................................................................................................................................................AAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371658" ref_strand="+" ref_description="SGN-E371658 [TUS-29-G16](-)">
      <seq>ctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataatgtggttattttatttcctcatacttggctgtaggatttctctatttcttgtcctcgcttgtaccaattttcctgaaaatataatgtaatttagagttgcgctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="27175" stop="25175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26875" g_stop="26846" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26845" i_stop="26475" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26474" g_stop="26296" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="209" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26295" i_stop="26154" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26153" g_stop="26070" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="293" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26069" i_stop="25991" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25990" g_stop="25823" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="461" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25822" i_stop="25726" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25725" g_stop="25475" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="712" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="722"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E371658" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26875" e_stop="26846"/>
          <exon e_start="26474" e_stop="26296"/>
          <exon e_start="26153" e_stop="26070"/>
          <exon e_start="25990" e_stop="25823"/>
          <exon e_start="25725" e_stop="25475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</genome_strand>
        <mrna_strand>CTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396943" ref_strand="+" ref_description="SGN-E396943 [TUS-44-F9](-)">
      <seq>gtgcaattttcacctttttttttgcattagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataatgtggttattttatttcctcatacttggctgtaggatttctctatttcttgtcctcgcttgtaccaattttcctgaaaatataatgtaatttagagttgcgctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="26777" stop="25175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26474" g_stop="26296" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="209" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26295" i_stop="26154" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26153" g_stop="26070" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="293" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26069" i_stop="25991" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25990" g_stop="25823" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="461" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25822" i_stop="25726" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25725" g_stop="25475" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="712" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="723"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E396943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26474" e_stop="26296"/>
          <exon e_start="26153" e_stop="26070"/>
          <exon e_start="25990" e_stop="25823"/>
          <exon e_start="25725" e_stop="25475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</genome_strand>
        <mrna_strand>TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371659" ref_strand="+" ref_description="SGN-E371659 [TUS-29-G16]">
      <seq>tgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataatgtggttattttatttcctcatacttggctgtaggatttctctatttcttgtcctcgcttgtaccaatttttctgaaaatataatgtaatttaaaagtgcgctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="27174" stop="25175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26874" g_stop="26846" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26845" i_stop="26475" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26474" g_stop="26296" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="208" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26295" i_stop="26154" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26153" g_stop="26070" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="292" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26069" i_stop="25991" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25990" g_stop="25823" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="460" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25822" i_stop="25726" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25725" g_stop="25484" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="702" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="712" polyA_stop="722"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E371659" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26874" e_stop="26846"/>
          <exon e_start="26474" e_stop="26296"/>
          <exon e_start="26153" e_stop="26070"/>
          <exon e_start="25990" e_stop="25823"/>
          <exon e_start="25725" e_stop="25484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGA</genome_strand>
        <mrna_strand>TGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTTCTGAAAATATAATGTAATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280362" ref_strand="+" ref_description="SGN-E280362 [cLER-1-G18]">
      <seq>tgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgtaggtggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattcgggagagagagtctcctgttcagtctgcctacaggacttccaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccttgcatcgatacatggctgttgaggcatggatcttgtccactgtgcagaagggatctgtaggtgattatactctgtaaattataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="27174" stop="25278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26874" g_stop="26846" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26845" i_stop="26475" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26474" g_stop="26296" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="208" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26295" i_stop="26154" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26153" g_stop="26070" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="292" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26069" i_stop="25991" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25990" g_stop="25823" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="460" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25822" i_stop="25726" i_length="97">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25725" g_stop="25578" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="608" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E280362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26874" e_stop="26846"/>
          <exon e_start="26474" e_stop="26296"/>
          <exon e_start="26153" e_stop="26070"/>
          <exon e_start="25990" e_stop="25823"/>
          <exon e_start="25725" e_stop="25578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAAT</genome_strand>
        <mrna_strand>TGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E594672" ref_strand="+" ref_description="SGN-E594672 [37928]">
      <seq>gggtttacctggagatactgttgaaaagatacctaagattgtacttactaatgataatgatgtggatgattctggagagagagtctcctgttcagtctgcctacaggtaagacacatgtatacctttagttttgctattctattgtctgttattgaattacttactggattctgaacgctgtactctgtttctatctttccaggactttcaacggggagagactgctagatgtttaccacaatgtcatcacatgtttcaccttccgtgcatcgatacatggctgtagagacatggatcttgtccattgtgcagacgggatctgtaggtgactgtactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="26228" stop="25289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25928" g_stop="25589" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E594672" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25928" e_stop="25589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTG</genome_strand>
        <mrna_strand>GGGTTTACCTGGAGATACTGTTGAAAAGATACCTAAGATTGTACTTACTAATGATAATGATGTGGATGATTCTGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATGTATACCTTTAGTTTTGCTATTCTATTGTCTGTTATTGAATTACTTACTGGATTCTGAACGCTGTACTCTGTTTCTATCTTTCCAGGACTTTCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCGTGCATCGATACATGGCTGTAGAGACATGGATCTTGTCCATTGTGCAGACGGGATCTGTAGGTGACTGTACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591357" ref_strand="+" ref_description="SGN-E591357 [45068]">
      <seq>aatctttatagtaataaggacaaaccccaagatttttcttgaatcgatcgaccaacaaaaaaaagaatggagttttatgcatacccatctcgtgctttgccttcatcatcctctgtttctaatttttcaatcggagatttggttgaaagggttaaatattgttttagctttgccgtatctaccatcgtcggcaatgtattctctgcaatcttcacctttttctttgcactagtgggaaccttattaggagcaatgactggagctttgataggccaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggaattggatgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacaaagtcagatgggagccattgatactgcatacgacgagttccctaacattttcgatgtaggcggggcaaagggtttacctggagattctgttgaaaagatacctaagattgtaattactaatgataatgatgtggatgattctggagagagagtctcctgttcagtctgcctacaggactttcaacggggagagactgctagatgtttaccacaatgtcatcacatgttttcaccttccgttgcatcgatacatggctgttggagacatggatcttgtccattgtgcagaaaggatctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="27379" stop="25305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27079" g_stop="26846" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26845" i_stop="26475" i_length="371">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26474" g_stop="26296" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="411" r_length="179" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26295" i_stop="26154" i_length="142">
            <donor d_prob="0.811" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26153" g_stop="26070" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="495" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26069" i_stop="25991" i_length="79">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25990" g_stop="25823" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="663" r_length="168" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25822" i_stop="25726" i_length="97">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25725" g_stop="25607" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="785" r_length="122" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E591357" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E591357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27079" e_stop="26846"/>
          <exon e_start="26474" e_stop="26296"/>
          <exon e_start="26153" e_stop="26070"/>
          <exon e_start="25990" e_stop="25823"/>
          <exon e_start="25725" e_stop="25607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATG-TTTCACCTTCC-TTGCATCGATACATGGCTGTT-GAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCT</genome_strand>
        <mrna_strand>AATCTTTATAGTAATAAGGACAAACCCCAAGATTTTTCTTGAATCGATCGACCAAC-A-AAAAAAAGAATGGAGTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTGGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACCATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGAACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGCCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGAATTGGATGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAAAGTCAG...............................................................................ATGGGAGCCATTGATACTGCATACGACGAGTTCCCTAACATTTTCGATGTAGGCGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCTGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG.................................................................................................GACTTTCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTTCACCTTCCGTTGCATCGATACATGGCTGTTGGAGACATGGATCTTGTCCATTGTGCAGAAAGGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396944" ref_strand="+" ref_description="SGN-E396944 [TUS-44-F9]">
      <seq>ctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgattctgcttatgacgagttccctaacattttcgatgtggggggggcaaagggtttacctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="27175" stop="25617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26875" g_stop="26846" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26845" i_stop="26475" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26474" g_stop="26296" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="209" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26295" i_stop="26154" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26153" g_stop="26070" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="293" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26069" i_stop="25991" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25990" g_stop="25917" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="367" r_length="74" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E396944" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26875" e_stop="26846"/>
          <exon e_start="26474" e_stop="26296"/>
          <exon e_start="26153" e_stop="26070"/>
          <exon e_start="25990" e_stop="25917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGG</genome_strand>
        <mrna_strand>CTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGATTCTGCTTATGACGAGTTCCCTAACATTTTCGATGTGGGGGGGGCAAAGGGTTTACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378630" ref_strand="+" ref_description="SGN-E378630 [TUS-44-F9]">
      <seq>cacctttttctttgcactagtgggcatcttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtggtagactagttcgtgagcggattggtcctgcaatgctaagtgcagtacagagtcagatgggagccattgaatctgcgtatgacgagttccctaacattttcgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="27165" stop="25641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26865" g_stop="26846" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26845" i_stop="26475" i_length="371">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26474" g_stop="26296" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="199" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26295" i_stop="26154" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26153" g_stop="26070" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="283" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26069" i_stop="25991" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25990" g_stop="25941" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="333" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E378630" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26865" e_stop="26846"/>
          <exon e_start="26474" e_stop="26296"/>
          <exon e_start="26153" e_stop="26070"/>
          <exon e_start="25990" e_stop="25941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAGGTATGTTGTAGCCTAGTTGGTTGATATTATGGGATTCTGCTTGAAACTTCATTTGTAACACTCTCTTATTGTTGGACAGATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGT</genome_strand>
        <mrna_strand>CACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCATCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG...............................................................................ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306983" ref_strand="+" ref_description="SGN-E306983 [cLEY-11-J23]">
      <seq>acaccttcttctctttgcctactcttatatatacatcgctactttcaaaaaaaacacatatatatttgctgctttcttggagccccagaatctttatactaataaggacaaaccccaagatttttctcgaatccatcatcgacctacaaaaaaagaatggacttttatgcatacccatctcgtgctttgccttcatcatcctctgtttctaatttttcaatcggagatttcgttgaaagggttaaatattgttttagctttgccgtatctacgatcgtcggcaatgtattctctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagcctattaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="27467" stop="25826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27167" g_stop="26846" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26845" i_stop="26475" i_length="371">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26474" g_stop="26296" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="501" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26295" i_stop="26154" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26153" g_stop="26126" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="529" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E306983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27167" e_stop="26846"/>
          <exon e_start="26474" e_stop="26296"/>
          <exon e_start="26153" e_stop="26126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTATTAAGTG</genome_strand>
        <mrna_strand>ACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTATTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306790" ref_strand="+" ref_description="SGN-E306790 [cLEY-11-K23]">
      <seq>tttgcctactctnatatatacatcgctactttcaaaaaaaacacatatatatttgctgctttcttggagccccagaatctttatactaataaggacaaaccccaagatttttctcgaatccatcatcgacctacaaaaaaagaatggacttttatgcatacccatctcgtgctttgccttcatcatcctctgtttctaatttttcaatcggagatttcgttgaaagggttaaatattgttttagctttgccgtatctacgatcgtcggcaatgtattctctgcaatcttcacctttttctttgcactagtgggcaccttattaggagcaatgactggagctttgatagggcaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgatgaatctggtattggttgtcttctttacttgattgatgtaatcgcgagccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="27454" stop="25833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27154" g_stop="26846" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26845" i_stop="26475" i_length="371">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26474" g_stop="26296" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="488" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26295" i_stop="26154" i_length="142">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26153" g_stop="26133" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="509" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E306790" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27154" e_stop="26846"/>
          <exon e_start="26474" e_stop="26296"/>
          <exon e_start="26153" e_stop="26133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTGGTAAGAATCGTTGCTTCTTCTGATTGAGCTGACTAATTTCTGTATAACTTGTATAAAAGGGACAACTTTATGTGAAAAATGTGAGTTCTATTTCATGATCCATTGACATTTGATTAATAGATACAACTCTTGAATTGTACAGATTGATGTAATCGCGAGCCTA</genome_strand>
        <mrna_strand>TTTGCCTACTCTNATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG..............................................................................................................................................ATTGATGTAATCGCGAGCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622803" ref_strand="+" ref_description="SGN-E622803 [73174]">
      <seq>ctttatagtaataaggacaaacccaagatttttcttgaatcgatcgaccaacaaaaaaaagaatggagttttatgcatacccatctcgtgctttgccttcatcatcctctgtttctaatttttcaatcggagatttggttgaaagggttaaatattgttttagctttgccgtatctaccatcgtcggcaatgtattctctgcaatcttcacctttttctttgcactagtgggaaccttattaggagcaatgactggagctttgataggccaggagacagaaagtggatttgttagaggtgctgcagttggtgccatatctggtgctgttttctctcttgaagtctttgaatcatctctattactatggcagtctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="27333" stop="26026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27076" g_stop="26846" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26845" i_stop="26475" i_length="371">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26474" g_stop="26326" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="377" r_length="149" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E622803" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27076" e_stop="26846"/>
          <exon e_start="26474" e_stop="26326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAGGTGGGTATTATTTTTGTTTTTTCTTATGATTTTTGCCCCAAATTGTGCGATTCCATTTGATGGCGTACAGTTTTGTAACGTGGGGTTCTGGGGAATTTTGTTCAACAATCGGTTATTTGGTTGAATTTGTGATTTGGGTTGATTTTAGGGAAAAGAATCTGAGAAGGGACAATTTTTGAATTTTTAAGTTTATATCTTGTATTTTTGTGGGTGATTATGTTCTAAATGTTTAGGATGGAATTACTTACTTTAATTTATAAAAAAAGCTGTTTCCTTTTTCGCTTTTTGGTGATGCTAATCTAGTGGTAAGGTTTGCGAATATTTTATTAGCTTTGTGGGAAGCTAACGTAGAATGAATTTGGTTGTTGTAGTGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGAT</genome_strand>
        <mrna_strand>CTTTATAGTAATAAGGACAAA-CCCAAGATTTTTCTTGAATCGATCGACCAAC-A-AAAAAAAGAATGGAGTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTGGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACCATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG...................................................................................................................................................................................................................................................................................................................................................................................TGGGAACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGCCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694049" ref_strand="+" ref_description="SGN-E694049 [LH_Ea02O15](-)">
      <seq>accaagagcctacgtttaccataacttcttgtccaaggaagaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttctggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggaatgaactctctgtatgtggaaaaggtggactctctgtaaaaccaaagatgggtgacgcattgcttttctggagcatgaagcctgatgcagttctagatccatcaagtttgcatggtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggctgcgcgtccatgaatacaaggcttaacctactgctagaggtcagttttgagtttggatgcagttactgttgtgccatttgtatcaaaaggaggatagtcttgaatagagccaccacacatgaagcttcaattttactttgatatagtaatcattctcaacattcttgttcctttcttttctgtgaagttgtgttttcatctgtgggtttaattggaacaaaaaagatgtgagatgcttcattcgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="38222" stop="34786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37921" g_stop="37824" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="129" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37823" i_stop="37697" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37696" g_stop="37599" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="227" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37598" i_stop="36488" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36487" g_stop="36358" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="357" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36357" i_stop="36277" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36276" g_stop="36089" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="545" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36088" i_stop="35909" i_length="180">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35908" g_stop="35822" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="632" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35821" i_stop="35290" i_length="532">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35289" g_stop="35087" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="837" r_length="205" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="838" polyA_stop="856"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E694049" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37921" e_stop="37824"/>
          <exon e_start="37696" e_stop="37599"/>
          <exon e_start="36487" e_stop="36358"/>
          <exon e_start="36276" e_stop="36089"/>
          <exon e_start="35908" e_stop="35822"/>
          <exon e_start="35289" e_stop="35087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTTTTTAACTCTTCCCACATTTTTCCATTTGGTTTGGTGTTTTAGTATTGATCCTTGAGACCCATAAGCTTAGTACTAAGTCCTTGAAATAAACAATTAGTGTATTTTTTTCTGTGTACCATCCTAGAAGTTTGCAGCCATGCATGAGAAAATGTTTATTTGTGGGAAGGGGTGTCTATACCTTGTGTACCTTTGAGTGCCGATGAAGCCTATGTTGAGATTGCAGCATGGTGTAACAGAAATATCTGTAGTGTCCTTGTGAAACAGAAAGGAAATAAGGACTTCTACAACCTTTAAATTTAGTGCTACTTCTCAAATATTTGCTTGTATATGTGATTTATTAATTTGTACAAATTGATATGCCACTTAATAGATATGGTTGTGCAGGTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTG--ATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAGATGTGAGAAGCTTCATTCG</genome_strand>
        <mrna_strand>TCCAAGGAAGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCTGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTCTCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG....................................................................................................................................................................................GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGCTGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGAGTTTGGATGCAGTTACTGTTGTGCCATTTGTATCAAAAGGAGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATATAGTAATCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTGAAGTTGTGTTTTCATCTGTGGGTTTAATTGGAACAAAAAAGATGTGAGATGCTTCATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691828" ref_strand="+" ref_description="SGN-E691828 [LH_Ea07C02]">
      <seq>ccggttaaaggtggactctctgtaaaaccaaagatgggtgacccattgcttttctggagcatgaagcctgatgcagttctagatccatcaagtttgcatggtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggctgcgcgtccatgaatacaaggcttaacctactgctagaggtcagttttgagtttggatgcagttactgttgtgccatttgtatcaaaaggaggatagtcttgaatagagccaccacacatgaagcttcaattttactttgatatagtaatcattctcaacattcttgttcctttcttttctgtgaagttgtgttttcatctgtgggtttaattggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="36482" stop="34807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36188" g_stop="36089" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36088" i_stop="35909" i_length="180">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35908" g_stop="35822" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="187" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35821" i_stop="35290" i_length="532">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35289" g_stop="35106" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="373" r_length="186" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E691828" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36188" e_stop="36089"/>
          <exon e_start="35908" e_stop="35822"/>
          <exon e_start="35289" e_stop="35106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTTTTTAACTCTTCCCACATTTTTCCATTTGGTTTGGTGTTTTAGTATTGATCCTTGAGACCCATAAGCTTAGTACTAAGTCCTTGAAATAAACAATTAGTGTATTTTTTTCTGTGTACCATCCTAGAAGTTTGCAGCCATGCATGAGAAAATGTTTATTTGTGGGAAGGGGTGTCTATACCTTGTGTACCTTTGAGTGCCGATGAAGCCTATGTTGAGATTGCAGCATGGTGTAACAGAAATATCTGTAGTGTCCTTGTGAAACAGAAAGGAAATAAGGACTTCTACAACCTTTAAATTTAGTGCTACTTCTCAAATATTTGCTTGTATATGTGATTTATTAATTTGTACAAATTGATATGCCACTTAATAGATATGGTTGTGCAGGTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTG--ATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAG</genome_strand>
        <mrna_strand>CCGGTTAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACCCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG....................................................................................................................................................................................GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGCTGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGTTTTGAGTTTGGATGCAGTTACTGTTGTGCCATTTGTATCAAAAGGAGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATATAGTAATCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTGAAGTTGTGTTTTCATCTGTGGGTTTAATTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484401" ref_strand="+" ref_description="SGN-E484401 [cSTE-13-O21]">
      <seq>ctgaatgcggaaaaggtggactctctgtaaaaccaaagatgggtgatgcattgcttttctggagcatgaagcctgatgcaactctagatccatcaagtttgcatggtgagtaatctgcatacaagcagatatggataatgggtgctgaacgttgagaacttgattattgcttactgacatccatcttctagctcacaaagttttaattgctatactgtattctggagtaatgagcaatggttatttgattggcaattaagtagtattgtgtatatcttgttttacgtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggatgcgcgtcgatgaatacaaggcttaacctactgctagaggtaaacattttcgcctgagtggtattaaatacacaaaaaatatgtgcaccctctgctgtcttcttatatgtacacaacttgttttatttgctagtactttccatttatgttgatgaatcttgctgtagcttttcagtggtctttttttcttttaccttccaatgcatttttccattaggtttggtgttttagtattgatccttgaggcccataaacttantactaagtccttgaaatgaacaattagtgtattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="36493" stop="35266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36193" g_stop="35566" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E484401" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36193" e_stop="35566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTT-TTTAACTCTTCCCA--CATTTTTCCATTTGGTTTGGTGTTTTAGTATTGATCCTTGAGACCCATAAGCTTAGTACTAAGTCCTTGAAATAAACAATTAGTGTATTTTTTT</genome_strand>
        <mrna_strand>CTGAATGCGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGATGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAACTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATATGGATAATGGGTGCTGAACGTTGAGAACTTGATTATTGCTTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATACTGTATTCTGGAGTAATGAGCAATGGTTATTTGATTGGCAATTAAGTAGTATTGTGTATATCTTGTTTTACGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCGATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTAAATACACAAAAAATATGTGCACCCTCTGCTGTCTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTCCATTTATGTTGATGAATCTTGCTGTAGCTTTTCAGTGGTCTTTTTTTCTTTTAC-CTTCCAATGCATTTTTCCATTAGGTTTGGTGTTTTAGTATTGATCCTTGAGGCCCATAAACTTANTACTAAGTCCTTGAAATGAACAATTAGTGTATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484399" ref_strand="+" ref_description="SGN-E484399 [cSTE-13-O17]">
      <seq>ctgaatgcggaaaaggtggactctctgtaaaaccaaagatgggtgatgcattgcttttctggagcatgaagcctgatgcaactctagatccatcaagtttgcatggtgagtaatctgcatacaagcagatatggataatgggtgctgaacgttgagaacttgattattgcttactgacatccatcttctagctcacaaagttttaattgctatactgtattctggagtaatgagcaatggttatttgattggcaattaagtagtattgtgtatatcttgttttaggtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggatgcgcgtcgatgaatacaaggcttaacctactgctagaggtaaacattttcgcctgagtggtattaaatacacaaaaaatatgtgcaccctctgctgtcttcttatatgtacacaacttgttttatttgctagtactctccatttatgttgatgaatcttgctgtagcttttcggtggtctttttttctttaacctttcaatgcatttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="36493" stop="35357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36193" g_stop="35649" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E484399" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36193" e_stop="35649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTT-TTTAACTCTTCCCACATTTTTCCAT</genome_strand>
        <mrna_strand>CTGAATGCGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGATGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAACTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATATGGATAATGGGTGCTGAACGTTGAGAACTTGATTATTGCTTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATACTGTATTCTGGAGTAATGAGCAATGGTTATTTGATTGGCAATTAAGTAGTATTGTGTATATCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCGATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTAAATACACAAAAAATATGTGCACCCTCTGCTGTCTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTCTCCATTTATGTTGATGAATCTTGCTGTAGCTTTTCGGTGGTCTTTTTTTCTTTAACCTTTCAATGCATTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484400" ref_strand="+" ref_description="SGN-E484400 [cSTE-13-O19]">
      <seq>tcaagtttgcatggtgaagtaatctgcataccaagcagaatatggataatgggtgcctgaacgttgaaaaccttgattattgcttactgacatccatcttctagctcacaaagttttaattgctatactgtattctggagtaatgagcaatggttatttgattggcaattaagtagtattgtgtatatcttgttttaggtgggtgccctgtaattaaaggtaacaaatggtcatctacaaaatggatgcgcgtcgatgaatacaaggcttaacctactgctagaggtaaacattttcgcctgagtggtattaaatacacaaaaaatatgtgcaccctctgctgtcttcttatatgtacacaacttgttttatttgctagtactttccatttatgttgatgaatcttgctgtagcttttcggttgtctttttttcttttaaccttccaatgcatttttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="36401" stop="35357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36101" g_stop="35650" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E484400" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36101" e_stop="35650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTTGCATGGTG-AGTAATCTGCATA-CAAGCAG-ATACGGATAATGGGTG-CTGAACATTGAGAA-CTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTT-TTTAACTCTTCCCA--CATTTTTCCA</genome_strand>
        <mrna_strand>TCAAGTTTGCATGGTGAAGTAATCTGCATACCAAGCAGAATATGGATAATGGGTGCCTGAACGTTGAAAACCTTGATTATTGCTTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATACTGTATTCTGGAGTAATGAGCAATGGTTATTTGATTGGCAATTAAGTAGTATTGTGTATATCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCGATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTAAATACACAAAAAATATGTGCACCCTCTGCTGTCTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTCCATTTATGTTGATGAATCTTGCTGTAGCTTTTCGGTTGTCTTTTTTTCTTTTAACCTTCCAATGCATTTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344189" ref_strand="+" ref_description="SGN-E344189 [cTOF-16-H23]">
      <seq>aatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggaatgaactatctgtatgtggaaaaggtggactctctgtaaaccaaagatgggtgacgcattgcttttctggagcatgaagcctgatgcagttctagatccatcaagtttgcatggtgggtgcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="39015" stop="35783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38715" g_stop="38527" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38526" i_stop="38436" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38435" g_stop="38348" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="277" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38347" i_stop="37922" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37921" g_stop="37824" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="375" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37823" i_stop="37697" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37696" g_stop="37599" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="473" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37598" i_stop="36461" i_length="1138">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.66"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36460" g_stop="36358" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="573" r_length="100" r_score="0.835"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36357" i_stop="36277" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36276" g_stop="36089" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="760" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36088" i_stop="35909" i_length="180">
            <donor d_prob="0.170" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="35908" g_stop="35898" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="771" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E344189" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38715" e_stop="38527"/>
          <exon e_start="38435" e_stop="38348"/>
          <exon e_start="37921" e_stop="37824"/>
          <exon e_start="37696" e_stop="37599"/>
          <exon e_start="36460" e_stop="36358"/>
          <exon e_start="36276" e_stop="36089"/>
          <exon e_start="35908" e_stop="35898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCT</genome_strand>
        <mrna_strand>AATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCA-AAT--TCTCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGT-AAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG....................................................................................................................................................................................GTGGGTGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700051" ref_strand="+" ref_description="SGN-E700051 [FA11DH06]">
      <seq>gctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggaatgaactatctgtatgtggaaaaggtggactctctgtaaaccaaagatgggtgacgcattgcttttctggagcatgaagcctgatgcagttctagatccatcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="39088" stop="35796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38788" g_stop="38527" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38526" i_stop="38436" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38435" g_stop="38348" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="350" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38347" i_stop="37922" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37921" g_stop="37824" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="448" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37823" i_stop="37697" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37696" g_stop="37599" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="546" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37598" i_stop="36488" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36487" g_stop="36358" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="676" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36357" i_stop="36277" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36276" g_stop="36096" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="856" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E700051" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38788" e_stop="38527"/>
          <exon e_start="38435" e_stop="38348"/>
          <exon e_start="37921" e_stop="37824"/>
          <exon e_start="37696" e_stop="37599"/>
          <exon e_start="36487" e_stop="36358"/>
          <exon e_start="36276" e_stop="36096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGT</genome_strand>
        <mrna_strand>GCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGT-AAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706740" ref_strand="+" ref_description="SGN-E706740 [FA30DB11]">
      <seq>gttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttaacactaaaaatgggggtcaacgcattgcgacggttttaatgtacttgtcagatgttgatgaagggggcgaaacagtattcccagctgcaaagggaaattatagtgcagtcccttgggggaatgaactatctgtatgtggaaaaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="39097" stop="35876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38797" g_stop="38527" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38526" i_stop="38436" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38435" g_stop="38348" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="359" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38347" i_stop="37922" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37921" g_stop="37824" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="457" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37823" i_stop="37697" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37696" g_stop="37599" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="555" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37598" i_stop="36488" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36487" g_stop="36358" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="685" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36357" i_stop="36277" i_length="81">
            <donor d_prob="0.703" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36276" g_stop="36176" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="786" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E706740" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38797" e_stop="38527"/>
          <exon e_start="38435" e_stop="38348"/>
          <exon e_start="37921" e_stop="37824"/>
          <exon e_start="37696" e_stop="37599"/>
          <exon e_start="36487" e_stop="36358"/>
          <exon e_start="36276" e_stop="36176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTG</genome_strand>
        <mrna_strand>GTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGGGGAATGAACTATCTGTATGTGGAAAAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334157" ref_strand="+" ref_description="SGN-E334157 [cTOD-21-G16]">
      <seq>tttgccgagttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactttcttgatgagtttacactaaaaatgggggtcaacgcattgcgacggttttatgtacttgtcagatgttgatgaaggggggcgaacagtattcccagctgcaaagggaaattatagtgcagtcccttggtggatgaactatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="39105" stop="35893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38805" g_stop="38527" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38526" i_stop="38436" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38435" g_stop="38348" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="367" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38347" i_stop="37922" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37921" g_stop="37824" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="465" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37823" i_stop="37697" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37696" g_stop="37599" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="563" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37598" i_stop="36488" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36487" g_stop="36358" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="691" r_length="128" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36357" i_stop="36277" i_length="81">
            <donor d_prob="0.703" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36276" g_stop="36193" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="774" r_length="83" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E334157" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38805" e_stop="38527"/>
          <exon e_start="38435" e_stop="38348"/>
          <exon e_start="37921" e_stop="37824"/>
          <exon e_start="37696" e_stop="37599"/>
          <exon e_start="36487" e_stop="36358"/>
          <exon e_start="36276" e_stop="36193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTTGTAAGTGACGTTTTCCCGGCAAGGTTTATTCTTAATGTATTCTCGTAGAGTCCCTTAGACAATTCTCTTGGCGTGCTGCAGGTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATC</genome_strand>
        <mrna_strand>TTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTT-ACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTT-ATGTACTT.................................................................................GTCAGATGTTGATGAAGGGGGGCGAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGG-ATGAACTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273507" ref_strand="+" ref_description="SGN-E273507 [cLEN-3-P16]">
      <seq>tttctttgccgagttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaactcaaagttccggaacatttcttgcaagagggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcataccagtagagcatggtgaaggtcttcaaattctccactacgaagtggggcaaaagtatgagccccactacgattactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="39109" stop="36118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38809" g_stop="38527" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38526" i_stop="38436" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38435" g_stop="38348" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="371" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38347" i_stop="37922" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37921" g_stop="37824" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="469" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37823" i_stop="37697" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37696" g_stop="37599" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="570" r_length="101" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37598" i_stop="36488" i_length="1111">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36487" g_stop="36418" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="640" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E273507" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38809" e_stop="38527"/>
          <exon e_start="38435" e_stop="38348"/>
          <exon e_start="37921" e_stop="37824"/>
          <exon e_start="37696" e_stop="37599"/>
          <exon e_start="36487" e_stop="36418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAAC-C--AGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAGGTATGCAATTCCTTTTTTTAAAAAAGAAGGATGTAACTCGATGAATATGCATCTTATTACTGAAGGATCATTTCGCCTCTAGATGTTATGGAAAGAATAGTCATTTAATAAAGCTTGAGGTGTCTGAAAATGGTTTTTCCTAGTTCACTAATTAGTTCTTCCTTTTTTGATGAACTCTATTTAATGGTGTTATCTAATGTACTCTCTCTGTCACTATTTCTTTGGTACTGTTTTGTTTGCCGTCCTTTACCGTCCCAGCACCTTTATATTTAGAAACTGAATATTTTTACATTCCCATTTTCTATTGACTTGACTGTTGTGCTCCATTTTTTTGGTCTAACGTTAGTTTGATATTTTGTTCATATTTAGAATGTCTGTCAAGGTCTTTTTTGTTTTCCTTTTTTAAACCATGTCTGTCAAATTATTCCAAAACAGATTGGCCCTTGAGGGAGTAATACTATTTGTCCATAATTTAAGGAAATTGGACAGCTTTCTCTGGCATCACCAGTAATAGAAATATACTGTATACATTTGTTAGGAATTTCATTATGCTAAATATGGATGTACACCAAGGGGAATGATCTTTTAGAGATCCAACAGAAAGAGCCTTATATTTCCAACCAATTAATGTAATTTCGTCGTATTAATGATTTCTGGAGTTGTATGCATTGTCCAATATATAATTGGATGCGTTATTTTTGGTCTGTTGTTCGATGCTGATTTAATATGCATTGAATTGAGGATGGTGGCTGGGGATGAGTATGAATGTAGTATAATGTCCAAAGTCTAGTAGTAAGTGGCCTATCTTGCTAGTGTAAGTCTTCTAATTAGTTAGTGACTATTCCAGGCATTATTAGTGTCAACCACTAGATTCATTTCTGCTCCTTACACATTCAGAGATATAACTTATTCTATGAACCTAAGTGTTCATTAACTTTTTTTGAGAAGAACCTTAAACTAGGTGCATCATCTTGATGCTTAACCAGTGATTCGTTTGAACGGCACTACTAGACGTGCTCAAATTGCCTCTTTCAGTAGTGATCTATGTGACTCTGTCATCATGTAATGCCTTAAACTACATGTGAATTGATGTATCTGCTTCTGTCTACAGAGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTT</genome_strand>
        <mrna_strand>TTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACTCAAAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303931" ref_strand="+" ref_description="SGN-E303931 [cLEX-4-O12]">
      <seq>gattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcagagtccgaaccagttccggaacatttcttgcaagaaggcgtgataaggtgatcagggatattgagaaaaggattgcagatttcaccttcatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="39049" stop="37304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38749" g_stop="38527" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38526" i_stop="38436" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38435" g_stop="38348" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="311" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38347" i_stop="37922" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37921" g_stop="37824" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37823" i_stop="37697" i_length="127">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37696" g_stop="37604" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="502" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E303931" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38749" e_stop="38527"/>
          <exon e_start="38435" e_stop="38348"/>
          <exon e_start="37921" e_stop="37824"/>
          <exon e_start="37696" e_stop="37604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACC</genome_strand>
        <mrna_strand>GATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAAGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205666" ref_strand="+" ref_description="SGN-E205666 [cLEC-21-C21]">
      <seq>tatattatatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgcgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtacatagttctactggcaagagtatggacagcaaagtccgaaccagttccggaacatttcttgcaagagggcgtgatagggtgatcagggatattgagaaaaggattgccgatttcacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="39074" stop="37310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38774" g_stop="38527" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38526" i_stop="38436" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38435" g_stop="38348" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="336" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38347" i_stop="37922" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37921" g_stop="37824" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="434" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37823" i_stop="37697" i_length="127">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.040" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37696" g_stop="37610" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="521" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E205666" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38774" e_stop="38527"/>
          <exon e_start="38435" e_stop="38348"/>
          <exon e_start="37921" e_stop="37824"/>
          <exon e_start="37696" e_stop="37610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAGGTAAGCATATTATTTGCATACCCGGGGATTGTCGAGCTAGGTTGTACTGCTGAGGATTATGGATATTTAATTCTAGTACCATCATTTATTCTCTAATTCTTTTCTCCTGTTATTCCCTCCCCGCCAGAGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTT</genome_strand>
        <mrna_strand>TATATTATATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGCGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTACATAGTTCTACTGGCAAGAGTATGGACAGCAA...............................................................................................................................AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAGGGTGATCAGGGATATTGAGAAAAGGATTGCCGATTTCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302382" ref_strand="+" ref_description="SGN-E302382 [cLEW-27-B1]">
      <seq>attagtcaaaattttaaaacccactgtttccatttctttgccgagttgcattagctgatcaaagttgtagattagatcttcaaatattcaaagattttgcagatttcatcgtggagtttgagtagcaatggcagtgaaaggaaggcattctcgattggggcctcgaaaatcgtcgaattctacactaatctttggtgggattattgtgttgtcatttttcgctctcattcttcttgctttccgaattatctcctttcacaggggctctcagaaagcacacgatctcacctctatagcccacaatacagttcaaagacaagatgatgacgacgatggaaaaactgatcagtgggttgaagtgatttcttcggaaccaagagcctacgtgtaccataacttcttgtccaaggaggaatgtgagtatctgattagtcttgccaagcctcacatgcaaaagtcaagtgtcgtagatagttctactggcaagagtatggacagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="39141" stop="37524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38841" g_stop="38527" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38526" i_stop="38436" i_length="91">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38435" g_stop="38348" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="403" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38347" i_stop="37922" i_length="426">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37921" g_stop="37824" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="501" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E302382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38841" e_stop="38527"/>
          <exon e_start="38435" e_stop="38348"/>
          <exon e_start="37921" e_stop="37824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAGGTACCCATTTCATTTGTGATTGTCTTTGTTCTTTTTTCTTTATTTTAGGGATCTGATTAACTTTGATGGGGATTCTTGTTTTTGGTCGCAGACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTGGTATCTCTCTTAAAGATTTCATCTCTTACGAATAGTGTTACATTGTGTTTATGTCTGCTACTAGTTATCTTACACCTATATTTCTTTCTCAATTTTATGCTTACAGCTATGCCTCAGTTTGTAGAAAATTAGAAATTTCTTGTTTTACCAACAATTAGTTTGTGATTTGTGAAATTTTTTATCGGGATTCTGTTGCTGCTTAGCGTATGGCAAAAAAAAGAAAAGAAAAGAATGTCAAAGAAATATGTAGGAGAATTGATTTGATTTGATTTTCTTTCAATAAAAATCATGCTCAAATGGAAGTTTTCAATGCCAAAGTTTCTTTTTCCAACTATGAAAATGATACTGGTGTTGATCTATTGATTGATACATTTACTGCTATCAATCAGATTTATTGCCCTAATTTTATTGTTCTCTCTTTGGCAGTCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG</genome_strand>
        <mrna_strand>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG...........................................................................................ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716230" ref_strand="+" ref_description="SGN-E716230 [FB16BH07]">
      <seq>gttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42687" stop="40413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42387" g_stop="42145" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42144" i_stop="41293" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41292" g_stop="41162" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="374" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41065" g_stop="40707" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="733" r_length="359" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E716230" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42387" e_stop="42145"/>
          <exon e_start="41292" e_stop="41162"/>
          <exon e_start="41065" e_stop="40707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCAT</genome_strand>
        <mrna_strand>GTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549238" ref_strand="+" ref_description="SGN-E549238 [TUS-68-J6](-)">
      <seq>caacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgttccagcaacttcaaccaaccccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42769" stop="40413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42469" g_stop="42145" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42144" i_stop="41293" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41292" g_stop="41162" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="457" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41065" g_stop="40708" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="815" r_length="358" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E549238" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42469" e_stop="42145"/>
          <exon e_start="41292" e_stop="41162"/>
          <exon e_start="41065" e_stop="40708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGC-ACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCA</genome_strand>
        <mrna_strand>CAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGTTCCAGCAACTTCAACCAACCCCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549137" ref_strand="+" ref_description="SGN-E549137 [TUS-67-K8]">
      <seq>caagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttatgtaatgggggttgtgaactactctgctgcacctggggtagaaattactgttaataaatatggttctatttatgtagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42696" stop="40413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42396" g_stop="42145" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42144" i_stop="41293" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41292" g_stop="41162" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="383" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41065" g_stop="40716" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="732" r_length="349" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="746"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E549137" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42396" e_stop="42145"/>
          <exon e_start="41292" e_stop="41162"/>
          <exon e_start="41065" e_stop="40716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</genome_strand>
        <mrna_strand>CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATGTAATGGGGGTTGTGAACTACTCTGCTGCACCTGGGGTAGAAATTACTGTTAATAAAT-ATGGTTCTATTTATGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545014" ref_strand="+" ref_description="SGN-E545014 [TUS-67-K8](-)">
      <seq>accaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtagaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42601" stop="40413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42301" g_stop="42145" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42144" i_stop="41293" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41292" g_stop="41162" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="288" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41065" g_stop="40716" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="638" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="639" polyA_stop="656"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E545014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42301" e_stop="42145"/>
          <exon e_start="41292" e_stop="41162"/>
          <exon e_start="41065" e_stop="40716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</genome_strand>
        <mrna_strand>ACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544972" ref_strand="+" ref_description="SGN-E544972 [TUS-67-J8](-)">
      <seq>aggaatacaaatactttgtgtatccctgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattattgtagaaaaaaaaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="41588" stop="40413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41288" g_stop="41162" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41065" g_stop="40716" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="476" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="477" polyA_stop="494"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E544972" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41288" e_stop="41162"/>
          <exon e_start="41065" e_stop="40716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</genome_strand>
        <mrna_strand>AGGAATACAAATACTTTGTGTA-TCCCTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541797" ref_strand="+" ref_description="SGN-E541797 [TUS-62-M11](-)">
      <seq>ttgatagcaggtcaattgacaactctgtattttgctctgtgatctactacagggaactgatgtacaaatagcatcccatctcctgatcgatagggggaaatacttatttttctcgaggataccttgtgaagtgtgatgtttgattgtgagaaagcatagaaaaaaatgatgattccattattatagtagttgatttggattccattatttcgaattaacttgcttacatattgttggttttgttaaggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="41839" stop="40413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41539" g_stop="41162" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41065" g_stop="40720" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="724" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="726" polyA_stop="735"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E541797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41539" e_stop="41162"/>
          <exon e_start="41065" e_stop="40720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATT</genome_strand>
        <mrna_strand>TTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716390" ref_strand="+" ref_description="SGN-E716390 [FB16DF10]">
      <seq>cttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgtgcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgcacctgtggtagaaattactgttaataaataatggttctattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="41563" stop="40422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41263" g_stop="41162" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41065" g_stop="40723" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="445" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="462"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E716390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41263" e_stop="41162"/>
          <exon e_start="41065" e_stop="40723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATT</genome_strand>
        <mrna_strand>CTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308976" ref_strand="+" ref_description="SGN-E308976 [cLEY-23-D13]">
      <seq>aagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagtcatgtttcatgtatgtttgtatattgggcttgtatatatatcattgtttgctcaagtgtgtgatactcaaaggaagtatcatatttatgatcattgaagttattgtattggggttgtgaactactctgctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42695" stop="40463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42395" g_stop="42145" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42144" i_stop="41293" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41292" g_stop="41162" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="382" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41065" g_stop="40763" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="685" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E308976" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42395" e_stop="42145"/>
          <exon e_start="41292" e_stop="41162"/>
          <exon e_start="41065" e_stop="40763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCA</genome_strand>
        <mrna_strand>AAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGGGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544973" ref_strand="+" ref_description="SGN-E544973 [TUS-67-J8]">
      <seq>caagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacggttccacttatattccgcaactatattgctacaaggctccacctccaccagtcacaagcacctttgggatcttctagccaattcatgatgccgttcacgcacacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42696" stop="40596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42396" g_stop="42145" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42144" i_stop="41293" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41292" g_stop="41162" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="383" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41065" g_stop="40896" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="553" r_length="170" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E544973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42396" e_stop="42145"/>
          <exon e_start="41292" e_stop="41162"/>
          <exon e_start="41065" e_stop="40896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGT</genome_strand>
        <mrna_strand>CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545629" ref_strand="+" ref_description="SGN-E545629 [TUS-68-J6]">
      <seq>caagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggtgcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactttgtgtattccttgaaggtggatgatgatgacatggagaacgaaatggtacctaagaacatctccgaaatcaatgagaacatgaaggagaagagagttggtataaaggactggtggacaaagagcaaatatgcatatctaaaccagcctgcactgaagtccatggaacgccacgnttccacttatattccgcaactatattgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42955" stop="40673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42655" g_stop="42145" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42144" i_stop="41293" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41292" g_stop="41162" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="642" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41065" g_stop="40973" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="735" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E545629" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42655" e_stop="42145"/>
          <exon e_start="41292" e_stop="41162"/>
          <exon e_start="41065" e_stop="40973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTGGTAAGTGAGACGTAACTATGTACTTATGATAAAAATCTGATTCAGTAATTGATGCTTATCAGCAACTTTGTCCGCTCGCACATTTGAGAGTTGCAGGTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTA</genome_strand>
        <mrna_strand>CAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG................................................................................................GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGNTTCCACTTATATTCCGCAACTATATTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274429" ref_strand="+" ref_description="SGN-E274429 [cLEN-19-G3]">
      <seq>tcaagcataaagactccttcacagttttcaaaggcatctgtctagatcaagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggcggaggaatacaaatactgtgtgtattccttgaaggtggatgatgatgacatggagaacgaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="43002" stop="40927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42702" g_stop="42589" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42588" i_stop="42397" i_length="192">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42396" g_stop="42145" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="366" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42144" i_stop="41293" i_length="852">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41292" g_stop="41227" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="432" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E274429" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42702" e_stop="42589"/>
          <exon e_start="42396" e_stop="42145"/>
          <exon e_start="41292" e_stop="41227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATG</genome_strand>
        <mrna_strand>TCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCT................................................................................................................................................................................................CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAGGAATACAAATACTGTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277034" ref_strand="+" ref_description="SGN-E277034 [cLEN-22-I16]">
      <seq>ctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaataattattggaaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttgataaagcatagtaagtgggagatctgtcaaaatcacacaatatgactctgcaacttttccatactttgaatagataatacttgagtgttccactttctttgcgtgttgtccatctaaaaggattccttaaaagtcatatattcagctgaaagggccaataataatagttaattgatggacaactaccatacttctatgcccataagcaaaagcttattattatatatacatggtccctataggctactatacaaagatgattaaaaaaatgttttggatgaagatccattgttattttctgtctcattatgaatataatataagttaaaagagattcataagttgcacttggtgataaatataacaaatgacagtgacctagcttttccttatctcactgctaatttgtagaaactgtgaagattaatctggaacttgtactattaaagattgatagcaggtcaattgacaactctgtattttgctctgtgatctactacagggaactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42448" stop="41178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42148" g_stop="41478" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E277034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42148" e_stop="41478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATG</genome_strand>
        <mrna_strand>CTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E434684" ref_strand="+" ref_description="SGN-E434684 [STM-60-E22]">
      <seq>caacaccaagccagaccaaacaggagattgctaagtattggaagcagaagcacaagactgaagaagagcacttcctcgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcagtaaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtacatacactctgtgaacaactttaggaaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgcttgccataaatcttttgataaagcatagaaagtgggagatatgtcaaaatcacacaatatgactctgcaactttgaatagataatacttgagtgttccactttctttgcgtattgtcctactaataagattccttaaaagtcatatattcagccgaaagggccaataataataattaattgatggataattactatacttctttgcccataagcaaaagcttatattgcattagtatatatacatggtcccagtaggctagtatacaaagatgataaaaaaatgttttggatgaagatccattgttattttctggctcagtatgaatataatataagttaaaagagattcataagttgcacttagtgatgaatatagccaatgactgtgacctagcttttcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42566" stop="41299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42266" g_stop="41599" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E434684" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E434684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42266" e_stop="41599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGC-T-TATT--A-T--TATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTT</genome_strand>
        <mrna_strand>CAACACCAAGCCAGACCAAACAGGAGATTGCTAAGTATTGGAAGCAGAAGCACAAGACTGAAGAAGAGCACTTCCTCGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCAGTAAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTACATACACTCTGTGAACAACTTTAGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGCTTGCCATAAATCTTTTGATAAAGCATAGAAAGTGGGAGATATGTCAAAATCACACAATATGACTCTG---------CA-ACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTATTGTCCTACTAATAAGATTCCTTAAAAGTCATATATTCAGCCGAAAGGGCCAATAATAATAATTAATTGATGGATAATTACTATACTTCTTTGCCCATAAGCAAAAGCTTATATTGCATTAGTATATATACATGGTCCCAGTAGGCTAGTATACAAAGATGA-TAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGGCTCAGTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTAGTGATGAATATAGCCAATGACTGTGACCTAGCTTTTCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338335" ref_strand="+" ref_description="SGN-E338335 [cTOE-13-B10]">
      <seq>tttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaataattattggaaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttgataaagcatagtaagtgggagatctgtcaaaatcacacaatatgactctgcaacttttccatactttgaatagataatacttgagtgttccactttctttgcgtgttgtccatctaaaaggattccttaaaagtcatatattcagctgaaagggccaataataataggtaattgatggacaactaccatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42588" stop="41499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42288" g_stop="41799" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E338335" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42288" e_stop="41799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATAC</genome_strand>
        <mrna_strand>TTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGGTAATTGATGGACAACTACCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541800" ref_strand="+" ref_description="SGN-E541800 [TUS-62-M11]">
      <seq>gttttcaaaggcatctgtctagatcaagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggtgcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaataattattggaaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttgataaagcatagtaagtgggagatctgtcaaatcacacaatatgactctgcaactttttcatacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42979" stop="41623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42679" g_stop="41923" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E541800" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42679" e_stop="41923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTT</genome_strand>
        <mrna_strand>GTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTC-AAATCACACAATATGACTCTGCAACTTTTTCATACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326805" ref_strand="+" ref_description="SGN-E326805 [cTOC-25-O24]">
      <seq>gcttacgctactctgcgttaaaatcaaccatgagtgcgatctttattgtttttaatctccctttcttcctcatcgacccaatctatgcaccagtgtaatctgaaccgtcatgatgaatatagaaattgtaccagataggagttttgaccgtaaaaattgagaatgtagttatcaagaatcagccattccaatattactagttgaattgtgggattatttcaatctaacaccgcgtaagtaagaatgtttggtgttcatttctatgatttcatttcagtgactgctcaaggttggtttttgtaattctggcaagatgtgctgacaacttactgtgtgagaggatgaggataagataagatctcgacaattgaatagaagaaaataatcttttcagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatacactttgtgaaatattattgggaaatagtgcatattaaattgcatctttccttatcctgatccatgtcctgtttgccataaatcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="43720" stop="41690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43420" g_stop="43027" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43026" i_stop="42397" i_length="630">
            <donor d_prob="0.720" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42396" g_stop="41990" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="801" r_length="407" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E326805" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43420" e_stop="43027"/>
          <exon e_start="42396" e_stop="41990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACGCTACTCTGCGTTAAAATCAACCATGAGTGCGATCTTTATTGTTTTTAATCTCCCTTTCTTCCTCATCGACCCAATCTATGCACCAGTGTAATCTGAACCGTCATGATGAATATAGAAATTGTACCAGATAGGAGTTTTGACCGTAAAAATTGAGAATGTAGTTATCAAGAATCAGCCATTCCAATATTACTAGTTGAATTGTGGGATTATTTCAATCTAACACCGCGTAAGTAAGAATGTTTGGTGTTCATTTCTATGATTTCATTTCAGTGACTGCTCAAGGTTGGTTTTTGTAATTCTGGCAAGATGTGCTGACAACTTACTGTGTGAGAGGATGAGGATAAGATAAGATCTCGACAATTGAATAGAAGAAAATAATCTTTTCAGGTGTGTAGTAAAATTTTGAAGTAACACATATTGTCCACTATAGCCGTCAAAAGTATCCATCCAATATCATTTTTAGCAATGCACTTGCGATGGAAACTATGTTGCTTTTTGGGAAAGAAACTTTTATCACGACACACAAAAAAACAGAGACAAGGGTGGTGGTTAACTGATGATGCCCCACCAAATTGCTGACATAAGGATAAATTATAATGACAGGCCGTTTTCTAATTTCTTAGTTAATTATGCAAGTGGCTTAAAGGTCTTCCATCATGGTCATATTCTATTGTCATTTATCGTAAATATATATCCGCAAGTTTGCCATAATCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTG</genome_strand>
        <mrna_strand>GCTTACGCTACTCTGCGTTAAAATCAACCATGAGTGCGATCTTTATTGTTTTTAATCTCCCTTTCTTCCTCATCGACCCAATCTATGCACCAGTGTAATCTGAACCGTCATGATGAATATAGAAATTGTACCAGATAGGAGTTTTGACCGTAAAAATTGAGAATGTAGTTATCAAGAATCAGCCATTCCAATATTACTAGTTGAATTGTGGGATTATTTCAATCTAACACCGCGTAAGTAAGAATGTTTGGTGTTCATTTCTATGATTTCATTTCAGTGACTGCTCAAGGTTGGTTTTTGTAATTCTGGCAAGATGTGCTGACAACTTACTGTGTGAGAGGATGAGGATAAGATAAGATCTCGACAATTGAATAGAAGAAAATAATCTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAAATATTATTGGGAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299879" ref_strand="+" ref_description="SGN-E299879 [cLEW-1-M24]">
      <seq>ttttcaaaggcatctgtctagatcaagtatcagcaatttctgcagcatagttttctgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggtgcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaagaagaccacttccttgatgccatcaaggctgcagccagaatcagggcgcgcaatctctcggtgaagttttcaaatcaatttatcacagttcttttttatatatagatgaatcatgtcatgtatatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42978" stop="41778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42678" g_stop="42078" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E299879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42678" e_stop="42078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATAC</genome_strand>
        <mrna_strand>TTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311326" ref_strand="+" ref_description="SGN-E311326 [cLEZ-18-K21]">
      <seq>gtatcaacaatatctgcagcatagctttatgttatttgctgactctattgtacacatcaaacctgtaagtcctccaacatctagtcccaaaattgtgattctatcttgatttttgtttgttggtatggagcactgttctgactctgaccaactagtctaaaatccgtccctactgagaggtctcaacttgcagtcctgttgttgcaactgtagtacataaatatattcttcatcatctcataatcttgatatccagcaagaatctgttgaaatcatgaagcaaagggaaggcaaaagtgtagctgatggaaaaaagtcaaagaagatcgctccagcacctccaccaccaccaccaacgtcgaggtttcttcttagcagaaaagtgacaacaccaagccataccaaacaggagattgctaagtattggaagcaaaagcgcaagactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="42952" stop="41905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42652" g_stop="42205" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E311326" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42652" e_stop="42205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAA</genome_strand>
        <mrna_strand>GTATCAACAATATCTGCAGCATAGCTTTATGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGAGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330365" ref_strand="+" ref_description="SGN-E330365 [cTOD-4-E7]">
      <seq>ttctttctcatttttaaagtttaagccatcaaaagtatgttcagtcaaatcatacaatttataacttactactgtacaacttctccatctcagaatagaaatagaaagtattgagtgctaaactttctgtgtatcctcctaataagaattccttagaaagtcaaattgttccagtgggtcaattattgttgtttgaagaacgatctagtaccactactaatacaacaacatacttagaggtcgtttggtagagtatataagtataatgctaaatagagtgtatagtaatgcatgtattagttatgtttgcattaattatacataaattattttaatgcattatttggtttgatgcatttaaaatagtatgtattgcattaaaaaattatttacaaatatacccttctcttttattgtggaaattggtaaacatgtttaaaaaaaatgttttgagggacaattgagtcttttatcattttaatgcatgtattaaaatcattgcatggttaatacctaaatattcatggtattaataatgcacaccttaatacacaatcattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="44627" stop="43466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44327" g_stop="43766" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E330365" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44327" e_stop="43766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCTCATTTTTAAAGTTTAGGCCATCAAAAGTATGTTCAGTCAAATCATACAATTTATAACTTACTACTGTACAACTTCTCCATCTCAGAATAGAAATAGAAAGTATTGAGTGCTAAACTTTCTGTGTATCCTCCTAATAAG-ATTCCTTAGAAAGTCAAATTGTTCCAGTGGGTCAATTATTGTTGTTTGAAGAACGATCTAGTACCACTACTAATACAACAACATACTTAGAGGTCGTTTGGTAGAGTATATAAGTATAATGCTAAATAGAGTGTATAGTAATGCATGTATTAGTTATGTTTGCATTAATTATACATAAATTATTTTAATGCATTATTTGGTTTGATGCATTTAAAATAGTATGTATTGCATTAAAAAATTATTTACAAATATACCCTTCTCTTTTATTGTGGAAATTGGTAAACATGTTTAAAAAAAATGTTTTGAGGGACAATTGAGTCTTTTATCATTTTAATGCATGTATTAAAATCATTGCATGGTTAATACCTAAATATTCATGGTATTAATAATGCACACCTTAATACACAATCATTAGT</genome_strand>
        <mrna_strand>TTCTTTCTCATTTTTAAAGTTTAAGCCATCAAAAGTATGTTCAGTCAAATCATACAATTTATAACTTACTACTGTACAACTTCTCCATCTCAGAATAGAAATAGAAAGTATTGAGTGCTAAACTTTCTGTGTATCCTCCTAATAAGAATTCCTTAGAAAGTCAAATTGTTCCAGTGGGTCAATTATTGTTGTTTGAAGAACGATCTAGTACCACTACTAATACAACAACATACTTAGAGGTCGTTTGGTAGAGTATATAAGTATAATGCTAAATAGAGTGTATAGTAATGCATGTATTAGTTATGTTTGCATTAATTATACATAAATTATTTTAATGCATTATTTGGTTTGATGCATTTAAAATAGTATGTATTGCATTAAAAAATTATTTACAAATATACCCTTCTCTTTTATTGTGGAAATTGGTAAACATGTTTAAAAAAAATGTTTTGAGGGACAATTGAGTCTTTTATCATTTTAATGCATGTATTAAAATCATTGCATGGTTAATACCTAAATATTCATGGTATTAATAATGCACACCTTAATACACAATCATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740230" ref_strand="+" ref_description="SGN-E740230 [LC20CD08]">
      <seq>cattccgctcctatgcaatagctcgcaaaccacataggagaggtaacctgcacaaggtaagcttggtgcgacgagctcgacccagaaggcaaaccccttgctttcgctggcaaggggtttcgaatttgagacctccaacatggaagtcccaagctcaaaccactgggccaccctgaagggtaactgttggccttgcaaaattattagtcatcttatctgcaattcagatttaattataagccaactgatggaggtcaaagatccgtaatgtttttgcttaccataaatctgtaaattaagttttgcctcgtagtctgcagtttcataagttgttgaggagctggttctccctttcacaatggggaaatcttttatatatttgtcttaattataaacatcaagctcaaacatgtgtcatttggtatgtttgatctgagaaaagaaacatttcatcagccaattcccagtacaataatggatcttctccgagatagaatagtggggagttgggcaggaagtaagataaaaattctagcaaggttgatcttagtagttgtaacttaatgatcctggtgcagacatgtgctgagataatcagttatcatgatcatggctggacaagattcatcttgaagttctgtttccttttaatttatgtatatctttctctttgagaagcaggctttacttaggtttcttgatcaaagggattgtgcataatgtccattggccactgctacattcataaatttctgacatcagtatcattcctaccattctaacccccctgataatgagttcgtcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="46169" stop="44767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45873" g_stop="45067" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="807" r_length="807" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E740230" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45873" e_stop="45067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGTAACCTGCACAAGGTAAGCTTGGTGCGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAATTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCTGAAGGGTAACTGTTGGCCTTGCAAAATTATTAGTCATCTTATCTGCAATTCAGATTTAATTATAAGCCAACTGATGGAGGTCAAAGATCCGTAATGTTTTTGCTTACCATAAATCTGTAAATTAAGTTTTGCCTCGTAGTCTGCAGTTTCATAAGTTGTTGAGGAGCTGGTTCTCCCTTTCACAATGGGGAAATCTTTTATATATTTGTCTTAATTATAAACATCAAGCTCAAACATGTGTCATTTGGTATGTTTGATCTGAGAAAAGAAACATTTCATCAGCCAATTCCCAGTACAATAATGGATCTTCTCCGAGATAGAATAGTGGGGAGTTGGGCAGGAAGTAAGATAAAAATTCTAGCAAGGTTGATCTTAGTAGTTGTAACTTAATGATCCTGGTGCAGACATGTGCTGAGATAATCAGTTATCATGATCATGGCTGGACAAGATTCATCTTGAAGTTCTGTTTCCTTTTAATTTATGTATATCTTTCTCTTTGAGAAGCAGGCTTTACTTAGGTTTCTTGATCAAAGGGATTGTGCATAATGTCCATTGGCCACTGCTACATTCATAAATTTCTGACATCAGTATCATTCCTACCATTCTAACCCCACTGATAATGAGTTCGTCTTC</genome_strand>
        <mrna_strand>CATTCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGTAACCTGCACAAGGTAAGCTTGGTGCGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAATTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCTGAAGGGTAACTGTTGGCCTTGCAAAATTATTAGTCATCTTATCTGCAATTCAGATTTAATTATAAGCCAACTGATGGAGGTCAAAGATCCGTAATGTTTTTGCTTACCATAAATCTGTAAATTAAGTTTTGCCTCGTAGTCTGCAGTTTCATAAGTTGTTGAGGAGCTGGTTCTCCCTTTCACAATGGGGAAATCTTTTATATATTTGTCTTAATTATAAACATCAAGCTCAAACATGTGTCATTTGGTATGTTTGATCTGAGAAAAGAAACATTTCATCAGCCAATTCCCAGTACAATAATGGATCTTCTCCGAGATAGAATAGTGGGGAGTTGGGCAGGAAGTAAGATAAAAATTCTAGCAAGGTTGATCTTAGTAGTTGTAACTTAATGATCCTGGTGCAGACATGTGCTGAGATAATCAGTTATCATGATCATGGCTGGACAAGATTCATCTTGAAGTTCTGTTTCCTTTTAATTTATGTATATCTTTCTCTTTGAGAAGCAGGCTTTACTTAGGTTTCTTGATCAAAGGGATTGTGCATAATGTCCATTGGCCACTGCTACATTCATAAATTTCTGACATCAGTATCATTCCTACCATTCTAACCCCCCTGATAATGAGTTCGTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349535" ref_strand="+" ref_description="SGN-E349535 [cTOS-1-I14]">
      <seq>aatacaaacttcaatctccataccaactatcttttcccaccggatttttacttcgaagccggcaataaaggtactctatctttctccgctgttgattcatccaaattcaagttcgagaaagaagataaaattaaaccctttttcgaaacccttgattattggggaattcagaggaaaaggactaagatgatgtgtatgaattgtgggaaggttgtgggctatgtgtatgatgacgggccacccatgactgagagtccgggtcagtttcattttggtcctagtcaggttattcctagagctgcaaggtataggataaaaaataaagctttgaagattacttctgagacttgacatgtgatttgatttttgatgttctttttttttagatgttgaggtttgtatatggatttaagagatgtttgatgtttgtgtatatgagattttgatttttacattttgttggttttgtgagctgtttcatattttgtgtaaatatttatactggatcaataaagactcaccttttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="47881" stop="46752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47581" g_stop="47052" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="540"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E349535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47581" e_stop="47052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTACATTTTGTTGGTTTTGTGAGCTGTTTCATATTTTGTGTAAATATTTATACTGGATCAATAAAGACTCACCTTTTATGA</genome_strand>
        <mrna_strand>AATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTACATTTTGTTGGTTTTGTGAGCTGTTTCATATTTTGTGTAAATATTTATACTGGATCAATAAAGACTCACCTTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310057" ref_strand="+" ref_description="SGN-E310057 [cLEZ-8-C8]">
      <seq>atcgaaccccttcaccgtcaaagatggcatcaatctacagttgtaaagagtgcaatacaaacttcaatctccataccaactatcttttcccaccggatttttacttcgaagccggcaataaaggtactctatctttctccgctgttgattcatccaaattcaagttcgagaaagaagataaaattaaaccctttttcgaaacccttgattattggggaattcagaggaaaaggactaagatgatgtgtatgaattgtgggaaggttgtgggctatgtgtatgatgacgggccacccatgactgagagtccgggtcagtttcattttggtcctagtcaggttattcctagagctgcaaggtataggataaaaaataaagctttgaagattacttctgagacttgacatgtgatttgatttttgatgttctttttttttagatgttgaggtttgtatatggatttaagagatgtttgatgtttgtgtatatgagattttgatttttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="47934" stop="46828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47634" g_stop="47129" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="516"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E310057" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47634" e_stop="47129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTAC</genome_strand>
        <mrna_strand>ATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323096" ref_strand="+" ref_description="SGN-E323096 [cTOB-28-O4]">
      <seq>gccttcccaaattcacggagaacgcggttttgaacccgattcatcttccccaaatttttctcttcataaaaaccccttaccacaatcgaaccccttcaccgtcaaagatggcatcaatctacagttgtaaagagtgcaatacaaacttcaatctccataccaactatcttttcccaccggatttttacttcgaagccggcaataaaggtactctatctttctccgctgttgattcatccaaattcaagttcgagaaagaagataaaattaaaccctttttcgaaacccttgattattggggaattcagaggaaaaggactaagatgatgtgtatgaattgtgggaaggttgtgggctatgtgtatgatgacgggccacccatgactgagagtccgggtcagtttcattttggtcctagtcaggttattcctagagctgcaaggtataggataaaaaataaagctttgaagattacttctgagacttgacatgtgatttgatttttgatggtctttttttttagatggtgaaggttgtatatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="48018" stop="46873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47718" g_stop="47173" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E323096" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47718" e_stop="47173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCCCAAATTCACGGAGAACGCGGTTTTGAACCCGATTCATCTTCCCCAAATTTTTCTCTTCATAAAAACCCCTTACCACAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATT</genome_strand>
        <mrna_strand>GCCTTCCCAAATTCACGGAGAACGCGGTTTTGAACCCGATTCATCTTCCCCAAATTTTTCTCTTCATAAAAACCCCTTACCACAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGGTCTTTTTTTTTAGATGGTGAAGGTTGTATATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281171" ref_strand="+" ref_description="SGN-E281171 [cLER-7-F14]">
      <seq>gcaatacaaacttcaatctccataccaactatcttttcccaccggatttttacttcgaagccggcaataaaggtactctatctttctccgctgttgattcatccaaattcaagttcgagaaagaagataaaattaaaccctttttcgaaacccttgattattggggaattcagaggaaaaggactaagatgatgtgtatgaattgtgggaaggttgtgggctatgtgtatgatgacgggccacccatgactgagagtccgggtcagtttcattttggtcctagtcaggttattcctagagctgcaaggtataggataaaaaataaagctttgaagattacttctgagacttgacatgtgatttgatttttgatgttcttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="47883" stop="46898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47583" g_stop="47198" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E281171" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47583" e_stop="47198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTT</genome_strand>
        <mrna_strand>GCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340783" ref_strand="+" ref_description="SGN-E340783 [cTOF-5-I4]">
      <seq>ctgagaggagacgaaagaagcgaaaaccagatctgtactgaacaagtgaaattgactgaagaatggagtcttaaaatagaaacttacatatagattaatcaaaaccctctgttatctatcttgttcgaaaaaaaaacaaaataattattctactgtataaatttcttctgtagaggtgtaacctaggttgcgccaccatggatttgcgcttccccttctagccggcggaggttgccaaggtccggacggtccagttcggcattgtcagcgccgacgaaattagataaatgtctgtggtgcacattgagcatggtgagactacggagttgagcgatcctcgacttgggacgattgatcggaagatgaagtgtaagacgtgtatggcgaacatggctgatgtccggggcattttggtcaccttgagcttgcgaaacctatgtttcatataggttttatggaacctgttcttagtatccttcggtgtgtctgcttcaattgctccaaaattctggcggatgaggacaatcccaagttcaaacaagccatgagaatcangaatcctaaaaacaggcttagaaagatgttggatgcttgcaagaacaaaacanaatgtgaaggangggatgaagttgatgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="52573" stop="54868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52871" g_stop="53151" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53152" i_stop="53243" i_length="92">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53244" g_stop="53507" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="520" r_length="239" r_score="0.886"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53508" i_stop="54449" i_length="942">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54450" g_stop="54568" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="639" r_length="119" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E340783" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52871" e_stop="53151"/>
          <exon e_start="53244" e_stop="53507"/>
          <exon e_start="54450" e_stop="54568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGAGGGGACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTCGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCCCCGACGAAATTGTAATTTTCACTAATCTTGATTCATTTTCTCGAATTCTCTAGGGTTTAAATTGATTTGGTTTTTGTAACTTGGTTTTTTGACGTAATTGCAGAGACAAATGTCTGTGGTGCACATTGAGCATGGTGAGACTACGGAGAGAGGGAAACCAAAGCCTGGAGGGTTGAGCGATCCTCGGCTTGGGACGATTGATCGGAAGATGAAGTGTGAGACGTGTATGGCGAACATGGCTGAATGTCCGGGGCATTTTGGTCACCTTGAGCTTGCGAAACCTATGTTTCATATAGGGTTTATGAAACCTGTTCTTAGTATCCTTCGGTGTGTCTGCTTCAATTGCTCCAAAATTCTGGCGGATGAGGTACTTTGATTGACTTGAATTGTTAGGTTAAAAGTTTGTGTACAGTGAAATTGTCTTCTTTGTCCTTTTTCTTGGTTTAAGAAGGATTGAATTACTGATCATATATTTTTCACTACCTGGTGTGATGTTCATGATGTCAATTAAATTATAAGTGGGTAAACCATTAACATTTGGAGGTTTCAGGTTTGCCAGTGGAGGTCTAGAAACAGGTTTTGAACAAGTACAGGCTGAACAAGTTTTGATAGAGCAGTATTTTTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTTTGGAAGGTTGCAAATTTCGTCATGCCTTTTCATTTTTCCTCCTGTTAGAAGGGAGAAATGATAAAACACTCTAATTGCATACCAATGTGAATAGATAGAAGATTCATTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATCAGGGAAAAGAGTGGCAACACTTCCTATATGAGTAGCTTTTACCTTAGAAGAATCAGGAAAATTGACATAGATAGGATTGGGTAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCTATTCACTAGACTTGATTAAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTGAACGGTGAAAATTGGATTATAATTCATGTATAGAGGTGATTCTAAAACTAGACAGCACTTAATGGTCTTGCTACATTTCCTTGCGCTTTCACTGAAGAATGAAGAGGAAAAAACTTGGTCTAATCTTGACGTCTCATAAGGAAGGAAGTGGTCGTGTCTCTATGCATTATTTCTGATACTCAATGCAGCTTTGGGTTGGATAATTGAATCTGTGGGTCTTCCGATTTTGTGCAGGACGATCCTAAGTTCAAACAAGCCATGAGAATCAGGAATCCTAAAAACAGGCTTAGAAAGATGTTGGATGCTTGCAAGAACAAAACAAAATGTGAAGGAGGGGATGAAATTGATGTACA</genome_strand>
        <mrna_strand>CTGAGAGGAGACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTAGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCGCCGACGAAATT............................................................................................AGATAAATGTCTGTGGTGCACATTGAGCATGGTGAGACT-------------------A--C-GGA--GTTGAGCGATCCTCGACTTGGGACGATTGATCGGAAGATGAAGTGTAAGACGTGTATGGCGAACATGGCTG-ATGTCCGGGGCATTTTGGTCACCTTGAGCTTGCGAAACCTATGTTTCATATAGGTTTTATGGAACCTGTTCTTAGTATCCTTCGGTGTGTCTGCTTCAATTGCTCCAAAATTCTGGCGGATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATCCCAAGTTCAAACAAGCCATGAGAATCANGAATCCTAAAAACAGGCTTAGAAAGATGTTGGATGCTTGCAAGAACAAAACANAATGTGAAGGANGGGATGAAGTTGATGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323903" ref_strand="+" ref_description="SGN-E323903 [cTOC-3-G15]">
      <seq>acgaaagaagcgaaaaccagatctgtactgaacaagtgaaattgactgaagaatggagtcttaaaatagaaacttacatatagattaatcaaaaccctctgttatctatcttgttcgaaaaaaaaacaaaataattattctactgtataaatttcttctgtagaggtgtaacctaggttgcgccaccatggatttgcgcttccccttctagccggcggaggttgccaaggtccggacggtccagttcggcattgtcagcgccgacgaaattagataaatgtctgtggtgcacattgagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="52581" stop="53573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52881" g_stop="53151" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53152" i_stop="53243" i_length="92">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53244" g_stop="53273" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="301" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E323903" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52881" e_stop="53151"/>
          <exon e_start="53244" e_stop="53273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTCGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCCCCGACGAAATTGTAATTTTCACTAATCTTGATTCATTTTCTCGAATTCTCTAGGGTTTAAATTGATTTGGTTTTTGTAACTTGGTTTTTTGACGTAATTGCAGAGACAAATGTCTGTGGTGCACATTGAGCAT</genome_strand>
        <mrna_strand>ACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTAGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCGCCGACGAAATT............................................................................................AGATAAATGTCTGTGGTGCACATTGAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349170" ref_strand="+" ref_description="SGN-E349170 [cTOS-2-A4]">
      <seq>aattttggagcaattgaagcagacacaccgaaggatactaagaacaggttccataaaacctatatgaaacataggtttcgcaagctcaaggtgaccaaaatgccccggacatcagccatgttcgccatacacgtcttacacttcatcttccgatcaatcgtcccaagtcgaggatcgctcaactccgtagtctcaccatgctcaatgtgcaccacagacatttatctctggaaacgaagaaacaaaaactaaatcaaatttaaaccctagagaattcaacaaaatgaatcaagattagtgaaaattacaatttcgtcggcgctgacaatgccgaactggaccgtccggaccttggcaacctccgccggctagaaggggaagcgcaaatccatggtggcgcaacctaggttacacctctacagaagaaatttatacagtagaataattattttgtttttttttcgaacaagatagataacagagggttttgattaatctatatgtaagtttctattttaagactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="53795" stop="52634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53495" g_stop="52935" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E349170" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.051" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53495" e_stop="52935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTTCATAAACCCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACATTCAGCCATGTTCGCCATACACGTCTCACACTTCATCTTCCGATCAATCGTCCCAAGCCGAGGATCGCTCAACCCTCCAGGCTTTGGTTTCCCTCTCTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTGTCTCTGCAATTACGTCAAAAAACCAAGTTACAAAAACCAAATCAATTTAAACCCTAGAGAATTCGAGAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGGGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCGAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAGTTTCTATTTTAAGACTCC</genome_strand>
        <mrna_strand>AATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTCCATAAAACCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACA-TCAGCCATGTTCGCCATACACGTCTTACACTTCATCTTCCGATCAATCGTCCCAAGTCGAGGATCGCTC-A------A-----------------CTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTATCTCTGGAA--ACG--AAGAAA-CAA-AAAC-TAAATC--A--AATTTAAACCCTAGAGAATTCAACAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGCGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCTAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAGTTTCTATTTTAAGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352610" ref_strand="+" ref_description="SGN-E352610 [cTOS-9-N8]">
      <seq>aattttggagcaattgaagcagacacaccgaaggatactaagaacaggttccataaaacctatatgaaacataggtttcgcaagctcaaggtgaccaaaatgccccggacatcagccatgttcgccatacacgtcttacacttcatcttccgatcaatcgtcccaagtcgaggatcgctcaactccgtagtctcaccatgctcaatgtgcaccacagacatttatctctggaaacgaagaaacaaaaactaaatcaaatttaaaccctagagaattcaacaaaatgaatcaagattagtgaaaattacaatttcgtcggcgctgacaatgccgaactggaccgtccggaccttggcaacctccgccggctagaaggggaagcgcaaatccatggtggcgcaacctaggttacacctctacagaagaaatttatacagtagaataattattttgtttttttttcgaacaagatagataacagagggttttgattaatctatatgtaagtttctattttaagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="53795" stop="52637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53495" g_stop="52937" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E352610" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.069" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53495" e_stop="52937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTTCATAAACCCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACATTCAGCCATGTTCGCCATACACGTCTCACACTTCATCTTCCGATCAATCGTCCCAAGCCGAGGATCGCTCAACCCTCCAGGCTTTGGTTTCCCTCTCTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTGTCTCTGCAATTACGTCAAAAAACCAAGTTACAAAAACCAAATCAATTTAAACCCTAGAGAATTCGAGAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGGGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCGAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAGTTTCTATTTTAAGACT</genome_strand>
        <mrna_strand>AATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTCCATAAAACCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACA-TCAGCCATGTTCGCCATACACGTCTTACACTTCATCTTCCGATCAATCGTCCCAAGTCGAGGATCGCTC-A------A-----------------CTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTATCTCTGGAA--ACG--AAGAAA-CAA-AAAC-TAAATC--A--AATTTAAACCCTAGAGAATTCAACAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGCGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCTAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAGTTTCTATTTTAAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E236454" ref_strand="+" ref_description="SGN-E236454 [cLED-13-N1]">
      <seq>tcaggtttgccagtggaggtctagaaacaagttttgaacaagtacaggctgaggaagttttgatagagcagtatttctctattacatcaacatgaccctttttaggagatagcttctatttacttactagttaatcaggatttggtagttcagtgaattgtatttttctggaatgttgcaaatttcgtcatgcctttttatttttcttcctgttagaagggagaaatgataaaatactctaattgcataccagtgtgaatagatggaagattcattttaaaagaaggaacataaagaactctatgaatgatcaaattagggaaaagagtagcaacacttcctatatgagtagcttttaccttcgaagaatcatgaaaaaggagtaaggtaagtgaaaagctcaggattagaagataaatgttctgaagctcccgagtctaatatccattcactagacttgattgaaataaagagtagtcaaactcactccattttgattgtttattcaacggtgagaatcggattataatttatgtatagaggtgattctaaaattagacaacacttaatggtcttgctacatttccttacggtttcacggtttcactgatgaatgaaagggaaaaaaaacttggtctaatcttgacgtctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="53387" stop="54652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53687" g_stop="54289" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E236454" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53687" e_stop="54289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAGGTTTTGAACAAGTACAGGCTGAACAAGTTTTGATAGAGCAGTATTTTTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTTTGGAAGGTTGCAAATTTCGTCATGCCTTTTCATTTTTCCTCCTGTTAGAAGGGAGAAATGATAAAACACTCTAATTGCATACCAATGTGAATAGATAGAAGATTCA-TTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATCAGGGAAAAGAGTGGCAACACTTCCTATATGAGTAGCTTTTACCTTAGAAGAATCAGGAAAATTGACATAGATAGGATTGGGTAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCTATTCACTAGACTTGATTAAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTGAACGGTGAAAATTGGATTATAATTCATGTATAGAGGTGATTCTAAAACTAGACAGCACTTAATGGTCTTGCTAC</genome_strand>
        <mrna_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTT---CG-A--A-G--AA-T--CAT-G--A--A------AAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCCATTCACTAGACTTGATTGAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTCAACGGTGAGAATCGGATTATAATTTATGTATAGAGGTGATTCTAAAATTAGACAACACTTAATGGTCTTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378095" ref_strand="+" ref_description="SGN-E378095 [TUS-21-D14]">
      <seq>tcaggtttgccagtggaggtctagaaacaagttttgaacaagtacaggctgaggaagttttgatagagcagtatttctctattacatcaacatgaccctttttaggagatagcttctatttacttactagttaatcaggatttggtagttcagtgaattgtatttttctggaatgttgcaaatttcgtcatgcctttttatttttcttcctgttagaagggagaaatgataaaatactctaattgcataccagtgtgaatagatggaagattcattttaaaagaaggaacataaagaactctatgaatgatcaaattagggaaaagagtagcaacacttcctatatgagtagcttttaccttcgaagaatcatgaaaaaggagtaaggtaagtgaaaagctcaggattagaagataaatgttctgaagctcccgagtctaatatccattcactagacttgattgaaataaagagtagtcaaactcactccattttgattgtttattcaacggtgagaatcggattataatttatgtatagaggtgattctaaaattagacaacacttaatggtcttgctacattttcttatcgtttcacggttttactgttgaatgaaggggaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="53387" stop="54597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53687" g_stop="54289" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E378095" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53687" e_stop="54289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAGGTTTTGAACAAGTACAGGCTGAACAAGTTTTGATAGAGCAGTATTTTTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTTTGGAAGGTTGCAAATTTCGTCATGCCTTTTCATTTTTCCTCCTGTTAGAAGGGAGAAATGATAAAACACTCTAATTGCATACCAATGTGAATAGATAGAAGATTCA-TTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATCAGGGAAAAGAGTGGCAACACTTCCTATATGAGTAGCTTTTACCTTAGAAGAATCAGGAAAATTGACATAGATAGGATTGGGTAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCTATTCACTAGACTTGATTAAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTGAACGGTGAAAATTGGATTATAATTCATGTATAGAGGTGATTCTAAAACTAGACAGCACTTAATGGTCTTGCTAC</genome_strand>
        <mrna_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTT---CG-A--A-G--AA-T--CAT-G--A--A------AAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCCATTCACTAGACTTGATTGAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTCAACGGTGAGAATCGGATTATAATTTATGTATAGAGGTGATTCTAAAATTAGACAACACTTAATGGTCTTGCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227034" ref_strand="+" ref_description="SGN-E227034 [cLED-1-J20]">
      <seq>tcaggtttgccagtggaggtctagaaacaagttttgaacaagtacaggctgaggaagttttgatagagcagtatttctctattacatcaacatgaccctttttaggagatagcttctatttacttactagttaatcaggatttggtagttcagtgaattgtatttttctggaatgttgcaaatttcgtcatgcctttttatttttcttcctgttagaagggagaaatgataaaatactctaattgcataccagtgtgaatagatggaagattcattttaaaagaaggaacataaagaactctatgaatgatcaaattagggaaaagagtagcaacacttcctatatgagtagcttttaccttcgaagaatcatgaaaaaggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="53387" stop="54367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53687" g_stop="54069" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E227034" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53687" e_stop="54069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAGGTTTTGAACAAGTACAGGCTGAACAAGTTTTGATAGAGCAGTATTTTTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTTTGGAAGGTTGCAAATTTCGTCATGCCTTTTCATTTTTCCTCCTGTTAGAAGGGAGAAATGATAAAACACTCTAATTGCATACCAATGTGAATAGATAGAAGATTCA-TTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATCAGGGAAAAGAGTGGCAACACTTCCTATATGAGTAGCTTTTACCTTAGAAGAATCAGGAAAATTGACA</genome_strand>
        <mrna_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTTCGAAGAATCATGAAAAAGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233379" ref_strand="+" ref_description="SGN-E233379 [cLED-9-K12]">
      <seq>tcaggtttgccagtggaggtctagaaacaagttttgaacaagtacaggctgaggaagttttgatagagcagtatttctctattacatcaacatgaccctttttaggagatagcttctatttacttactagttaatcaggatttggtagttcagtgaattgtatttttctggaatgttgcaaatttcgtcatgcctttttatttttcttcctgttagaagggagaaatgataaaatactctaattgcataccagtgtgaatagatggaagattcattttaaaagaaggaacataaagaactctatgaatgatcaaattagggaaaagagtagcaacacttcctatatgagtagcttttaccttcgaagaatcatgaaaaaggagtaaggtaagtgaaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="53387" stop="54409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53687" g_stop="54062" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E233379" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53687" e_stop="54062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAGGTTTTGAACAAGTACAGGCTGAACAAGTTTTGATAGAGCAGTATTTTTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTTTGGAAGGTTGCAAATTTCGTCATGCCTTTTCATTTTTCCTCCTGTTAGAAGGGAGAAATGATAAAACACTCTAATTGCATACCAATGTGAATAGATAGAAGATTCA-TTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATCAGGGAAAAGAGTGGCAACACTTCCTATATGAGTAGCTTTTACCTTAGAAGAATCAGGAAA</genome_strand>
        <mrna_strand>TCAGGTTTGCCAGTGGAGGTCTAGAAACAAGTTTTGAACAAGTACAGGCTGAGGAAGTTTTGATAGAGCAGTATTTCTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTCTGGAATGTTGCAAATTTCGTCATGCCTTTTTATTTTTCTTCCTGTTAGAAGGGAGAAATGATAAAATACTCTAATTGCATACCAGTGTGAATAGATGGAAGATTCATTTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATTAGGGAAAAGAGTAGCAACACTTCCTATATGAGTAGCTTTTACCTTCGAAGAATCATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745079" ref_strand="+" ref_description="SGN-E745079 [GI|68300818]">
      <seq>gctacacaaagatcaggtagacctattaaatcaatatgtagtagattaaaatcaaaggaaggtcggatcagaggcaatctgatgggtaaaagagtagacttttctgctcggactgtgattacccccgatccaactattaacattgatcaattgggagtcccatggagtattgctctgaatctcacttatccagaaacagtgacaccatataacattgaaaggttaaaggaacttgttgaatatggacctcatccacctcctggtaaaaccggggccaagtatataattagggacgacggccaaaggcttgatcttcgatacttgaagaagagcagcgatcaacaccttgaactaggatataaggttgagaggcacttaaatgatggagattttgttctcttcaatcggcaacccagtctacataaaatgtctattatgggacataggattaagatcatgccatactcaactttccgcttgaatttatctgtcacttctccttacaatgctgattttgatggtgacgaaatgaacatgcatgttccacagtcgtttgaaaccagagcagaggttctggagcttatgatggtccctaagtgtattgtttcaccccaggcaaataggcctgtaatgggtatcgtccaggatacccttttaggttgccgcaaagttactaaaagagatacctttatagaaaaggatgtctttatgaacatcttaatgtggtgggaggattttgatgggaaagtacccgctccagtgattcttaaaccaaggccactttggactggaaagcaagtgtttaacctcatcataccaaaacaaataaatcttttaagatactccgtatggcataatgactccgaaaaaggatacataactcctggagatactcaagttagaatagagaaaggggagttgctatctggtactctttgcaaaaagacccttgggacgtccaccggaagtctgattcatgttatatgganagaggttgggcctgatgctgctcgnaagtttttgggacatacacagtggcttgttaattattggcttcttcagcaagcttttagcatcgggataggagatacaattgctgatgcttcaacgatggagaaaattaatgaaactatctcgaatgcaaaagccaaagtcaaagaacttattaaagctgctcaggagaagctgttagaagctgaaccagggcgaactatgatggaatcatttgagaacagagtgaaccaggtgttaaataaggctcgtgatgatgctggaagcagtgcagagaagagtttatcagagagcaataatcttaaagctatggttactgctggatcgaagggaagttttatcaacatatctcaaatgactgcctgtgtggggcaacagaatgttgaaggaaaacgtattccatttggtttcatagaccgtactcttcctcattttaccaaagatgattatggtccggaaagtcgtggttttgtagagaattcatatctccggggactgaccccgcaagagttcttcttccatgctatgggtggtagagaaggtctgattgatactgctgtgaaaacttctgagaccgggtacattcagaggcggttagtgaaggccatggaggatatcatggtcaagtatgacggcactgttaggaattcattgggggatgtaatccagtttctgtatggggaagatgggatggattctgtttggattgagacacagaagctggattctctgaaagcaaagaaaggaacatttgatgacatgtatgcatatgagatcgatgatcctaactggaacccaagttacatgttgccagaagctgtcgaagatttaaaaggtattcgggagattcgtagtgtgtttgatgcggaggtccagaaacttgaagctgatagacatcagcttgggacagagattgctgtaacgggtgacaattcttggcctcttcctgttaacattcagaggcttgtcttaaatgcccaaaagacatttaaaatagatttccggaggccctctgacatgcatccgatggagatcgtggaagctgttgataagttacaggagaggcttaaggttgttcctggtgatgattatctaagcatggaggctcaaaagaatgctactcttttcttcaatatcttgctccgtagtgccttggctagtaaaagggttctgaaggagtataggcttagtcgagaggcttttgaatgggtagttggtgagatagagtctcgcttcttgcaatcccttgtggcaccaggagagatgattggctgtgttgctgcacagtctattggtgaacctgccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="55092" stop="58663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55392" g_stop="55612" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55613" i_stop="55725" i_length="113">
            <donor d_prob="0.443" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55726" g_stop="55867" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="363" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55868" i_stop="55948" i_length="81">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55949" g_stop="56284" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="699" r_length="336" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56285" i_stop="56375" i_length="91">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56376" g_stop="56662" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="986" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56663" i_stop="56946" i_length="284">
            <donor d_prob="0.380" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56947" g_stop="57205" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="987" r_stop="1245" r_length="259" r_score="0.981"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57206" i_stop="57289" i_length="84">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57290" g_stop="58363" g_length="1074"/>
          <reference_exon_boundary r_type="cDNA" r_start="1246" r_stop="2319" r_length="1074" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E745079" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>2319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55392" e_stop="55612"/>
          <exon e_start="55726" e_stop="55867"/>
          <exon e_start="55949" e_stop="56284"/>
          <exon e_start="56376" e_stop="56662"/>
          <exon e_start="56947" e_stop="57205"/>
          <exon e_start="57290" e_stop="58363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACACAAAGATCAGGTAGACCTATTAAATCAATATGTAGTAGATTAAAATCAAAGGAAGGTCGGATCAGAGGCAATCTGATGGGTAAAAGAGTAGACTTTTCTGCTCGGACTGTGATTACCCCCGATCCAACTATTAACATTGATCAATTGGGAGTCCCATGGAGTATTGCTCTGAATCTCACTTATCCAGAAACAGTGACACCATATAACATTGAAAGGTGTTTTTTTGTTGTTGTAAAAATGAAACCCCACACTTATCAAATCATTTGAAACAAGAAGGAAAATTGAACTGTATATGTTTGTGCTGATTGAAGCTGGGGTTTTCACACAGGTTAAAGGAACTTGTTGAATATGGACCTCATCCACCTCCTGGTAAAACCGGGGCCAAGTATATAATTAGGGACGACGGCCAAAGGCTTGATCTTCGATACTTGAAGAAGAGCAGCGATCAACACCTTGAACTAGGATATAAGGTTTGTTTCTTTCAGTTCCAAGTAATTGAGGGGCTTTTGATGTCTGTGGTAGCTCCGTAACAGCCAATGCTGCCTATGCAGGTTGAGAGGCACTTAAATGATGGAGATTTTGTTCTCTTCAATCGGCAACCCAGTCTACATAAAATGTCTATTATGGGACATAGGATTAAGATCATGCCATACTCAACTTTCCGCTTGAATTTATCTGTCACTTCTCCTTACAATGCTGATTTTGATGGTGACGAAATGAACATGCATGTTCCACAGTCGTTTGAAACCAGAGCAGAGGTTCTGGAGCTTATGATGGTCCCTAAGTGTATTGTTTCACCCCAGGCAAATAGGCCTGTAATGGGTATCGTCCAGGATACCCTTTTAGGTTGCCGCAAAGTTACTAAAAGAGATACCTTTATAGAAAAGGTGAATCTGCATGTGCCATTTCATAATTCTTTATCAAATATTTCATGATTTTGCATGATCTAGTAAAGAATGCTTATTTTTTGGCTTGCAGGATGTCTTTATGAACATCTTAATGTGGTGGGAGGATTTTGATGGGAAAGTACCCGCTCCAGTGATTCTTAAACCAAGGCCACTTTGGACTGGAAAGCAAGTGTTTAACCTCATCATACCAAAACAAATAAATCTTTTAAGATACTCCGCATGGCATAATGATTCCGAAAAAGGATACATAACTCCTGGAGATACTCAAGTTAGAATAGAGAAAGGGGAGTTGCTATCTGGTACTCTTTGCAAAAAGACCCTTGGGACGTCCACCGGAAGTCTGATTCATGTTATATGGTATGCATTTTCAGAATTTTGTATTTCTACCCCCCCCCCCCCCCCGCCATCTTGATTGCATGCACAAAAGGGCTGGCTTTGTGTCGAATCCTAAACACTTTTATGGACAATAACCGTCTTGTGTGCGGGGCTTGCTTTCCTCCTCCTGTTTATCTGCGGATGCTGTCATTAGTTAAATGCCAGGTGGATGAGATGATAGCTGCAAAACATGGGCTTTATAATTATGTTACCGTAAGCAGAGTCATTGTCATTTTTCCTGTAGTTAACTTTGCCTCTGCAAACAGGGAGGAGGTTGGGCCTGATGCTGCTCGGAAGTTTTTGGGACATACACAGTGGCTTGTTAATTATTGGCTTCTTCAGCAAGCTTTTAGCATCGGGATAGGAGATACAATTGCTGATGCTTCAACGATGGAGAAAATTAATGAAACTATCTCGAATGCAAAAGCCAAAGTCAAAGAACTTATTAAAGCTGCTCAAGAGAAGCTGTTAGAAGCTGAACCAGGGCGAACTATGATGGAATCATTTGAGAACAGAGTGAACCAGGTACTTTTTGTAAATGGACATCCATCTTTTCCTGTTCCTTTTGCTTGATGACTTCTTTTAATAATGTTTTTGTTGTAATCTTAGGTGTTAAATAAGGCTCGTGATGATGCTGGAAGCAGTGCAGAGAAGAGTTTATCAGAGAGCAATAATCTTAAAGCTATGGTTACTGCTGGATCGAAGGGAAGTTTTATCAACATATCTCAAATGACTGCCTGTGTGGGGCAACAGAATGTTGAAGGAAAACGTATTCCATTTGGTTTCATAGACCGTACTCTTCCTCATTTTACCAAAGATGATTATGGTCCGGAAAGTCGTGGTTTTGTAGAGAATTCATATCTCCGGGGACTGACCCCGCAAGAGTTCTTCTTCCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAAACTTCTGAGACCGGGTACATTCAGAGGCGGTTAGTGAAGGCCATGGAGGATATCATGGTCAAGTATGACGGCACTGTTAGGAATTCATTGGGGGATGTAATCCAGTTTCTGTATGGGGAAGATGGGATGGATTCTGTTTGGATTGAGACACAGAAGCTGGATTCTCTGAAAGCAAAGAAAGGAACATTTGATGACATGTATGCATATGAGATCGATGATCCTAACTGGAACCCAAGTTACATGTTGCCAGAAGCTGTCGAAGATTTAAAAGGTATTCGGGAGATTCGTAGTGTGTTTGATGCGGAGGTCCAGAAACTTGAAGCTGATAGACATCAGCTTGGGACAGAGATTGCTGTAACGGGTGACAATTCTTGGCCTCTTCCTGTTAACATTCAGAGGCTTGTCTTAAATGCCCAAAAGACATTTAAAATAGATTTCCGGAGGCCCTCTGACATGCATCCGATGGAGATCGTGGAAGCTGTTGATAAGTTACAGGAGAGGCTTAAGGTTGTTCCTGGTGATGATTATCTAAGCATGGAGGCTCAAAAGAATGCTACTCTTTTCTTCAATATCTTGCTCCGTAGTGCCTTGGCTAGTAAAAGGGTTCTGAAGGAGTATAGGCTTAGTCGAGAGGCTTTTGAATGGGTAGTTGGTGAGATAGAGTCTCGCTTCTTGCAATCCCTTGTGGCACCAGGAGAGATGATTGGCTGTGTTGCTGCACAGTCTATTGGTGAACCTGCCACA</genome_strand>
        <mrna_strand>GCTACACAAAGATCAGGTAGACCTATTAAATCAATATGTAGTAGATTAAAATCAAAGGAAGGTCGGATCAGAGGCAATCTGATGGGTAAAAGAGTAGACTTTTCTGCTCGGACTGTGATTACCCCCGATCCAACTATTAACATTGATCAATTGGGAGTCCCATGGAGTATTGCTCTGAATCTCACTTATCCAGAAACAGTGACACCATATAACATTGAAAG.................................................................................................................GTTAAAGGAACTTGTTGAATATGGACCTCATCCACCTCCTGGTAAAACCGGGGCCAAGTATATAATTAGGGACGACGGCCAAAGGCTTGATCTTCGATACTTGAAGAAGAGCAGCGATCAACACCTTGAACTAGGATATAAG.................................................................................GTTGAGAGGCACTTAAATGATGGAGATTTTGTTCTCTTCAATCGGCAACCCAGTCTACATAAAATGTCTATTATGGGACATAGGATTAAGATCATGCCATACTCAACTTTCCGCTTGAATTTATCTGTCACTTCTCCTTACAATGCTGATTTTGATGGTGACGAAATGAACATGCATGTTCCACAGTCGTTTGAAACCAGAGCAGAGGTTCTGGAGCTTATGATGGTCCCTAAGTGTATTGTTTCACCCCAGGCAAATAGGCCTGTAATGGGTATCGTCCAGGATACCCTTTTAGGTTGCCGCAAAGTTACTAAAAGAGATACCTTTATAGAAAAG...........................................................................................GATGTCTTTATGAACATCTTAATGTGGTGGGAGGATTTTGATGGGAAAGTACCCGCTCCAGTGATTCTTAAACCAAGGCCACTTTGGACTGGAAAGCAAGTGTTTAACCTCATCATACCAAAACAAATAAATCTTTTAAGATACTCCGTATGGCATAATGACTCCGAAAAAGGATACATAACTCCTGGAGATACTCAAGTTAGAATAGAGAAAGGGGAGTTGCTATCTGGTACTCTTTGCAAAAAGACCCTTGGGACGTCCACCGGAAGTCTGATTCATGTTATATG............................................................................................................................................................................................................................................................................................GARAGAGGTTGGGCCTGATGCTGCTCGNAAGTTTTTGGGACATACACAGTGGCTTGTTAATTATTGGCTTCTTCAGCAAGCTTTTAGCATCGGGATAGGAGATACAATTGCTGATGCTTCAACGATGGAGAAAATTAATGAAACTATCTCGAATGCAAAAGCCAAAGTCAAAGAACTTATTAAAGCTGCTCAGGAGAAGCTGTTAGAAGCTGAACCAGGGCGAACTATGATGGAATCATTTGAGAACAGAGTGAACCAG....................................................................................GTGTTAAATAAGGCTCGTGATGATGCTGGAAGCAGTGCAGAGAAGAGTTTATCAGAGAGCAATAATCTTAAAGCTATGGTTACTGCTGGATCGAAGGGAAGTTTTATCAACATATCTCAAATGACTGCCTGTGTGGGGCAACAGAATGTTGAAGGAAAACGTATTCCATTTGGTTTCATAGACCGTACTCTTCCTCATTTTACCAAAGATGATTATGGTCCGGAAAGTCGTGGTTTTGTAGAGAATTCATATCTCCGGGGACTGACCCCGCAAGAGTTCTTCTTCCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAAACTTCTGAGACCGGGTACATTCAGAGGCGGTTAGTGAAGGCCATGGAGGATATCATGGTCAAGTATGACGGCACTGTTAGGAATTCATTGGGGGATGTAATCCAGTTTCTGTATGGGGAAGATGGGATGGATTCTGTTTGGATTGAGACACAGAAGCTGGATTCTCTGAAAGCAAAGAAAGGAACATTTGATGACATGTATGCATATGAGATCGATGATCCTAACTGGAACCCAAGTTACATGTTGCCAGAAGCTGTCGAAGATTTAAAAGGTATTCGGGAGATTCGTAGTGTGTTTGATGCGGAGGTCCAGAAACTTGAAGCTGATAGACATCAGCTTGGGACAGAGATTGCTGTAACGGGTGACAATTCTTGGCCTCTTCCTGTTAACATTCAGAGGCTTGTCTTAAATGCCCAAAAGACATTTAAAATAGATTTCCGGAGGCCCTCTGACATGCATCCGATGGAGATCGTGGAAGCTGTTGATAAGTTACAGGAGAGGCTTAAGGTTGTTCCTGGTGATGATTATCTAAGCATGGAGGCTCAAAAGAATGCTACTCTTTTCTTCAATATCTTGCTCCGTAGTGCCTTGGCTAGTAAAAGGGTTCTGAAGGAGTATAGGCTTAGTCGAGAGGCTTTTGAATGGGTAGTTGGTGAGATAGAGTCTCGCTTCTTGCAATCCCTTGTGGCACCAGGAGAGATGATTGGCTGTGTTGCTGCACAGTCTATTGGTGAACCTGCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549902" ref_strand="+" ref_description="SGN-E549902 [TUS-6-B23]">
      <seq>atacaatcatcaccttgaactaggatataaggttgagaggcacttaaatgatggagattttgttctcttcaatcggcaacccagtctacataaaatgtctattatgggacataagattaagatcatgccatactcaactttctgcttgaatttatctttcatttctttcttacaatgctgattttgatggtgacgaaatgaacatgcatgttccacagtcatttgaaaccagagcataggtgctggagcttatgatggtccctaagtgtattgtttcaccccaggcaaactgtaattggtatcgtccaggatacccttttaggttgccgcgaagttattaaaagagatatctttatagaaaaggatgtctttatgaacatcttaatgtggtgggaggattttgatgggaaagtacccgctccagtgattcttaaaccaaggccacattggactggaaagcaagtgtttaacctcatcataccaaaacaaataaatcttttaagatattctgcatggcataatgattcagagaaaggatacataactcctggaaatactcaagttataatagagaaaggggagttgctatctggtactctttgcaaaagactcttgggacgtctgcttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="55540" stop="56935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55837" g_stop="55867" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55868" i_stop="55948" i_length="81">
            <donor d_prob="0.884" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55949" g_stop="56284" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="363" r_length="332" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56285" i_stop="56375" i_length="91">
            <donor d_prob="0.929" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56376" g_stop="56644" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="631" r_length="268" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E549902" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55837" e_stop="55867"/>
          <exon e_start="55949" e_stop="56284"/>
          <exon e_start="56376" e_stop="56644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGATCAACACCTTGAACTAGGATATAAGGTTTGTTTCTTTCAGTTCCAAGTAATTGAGGGGCTTTTGATGTCTGTGGTAGCTCCGTAACAGCCAATGCTGCCTATGCAGGTTGAGAGGCACTTAAATGATGGAGATTTTGTTCTCTTCAATCGGCAACCCAGTCTACATAAAATGTCTATTATGGGACATAGGATTAAGATCATGCCATACTCAACTTTCCGCTTGAATTTATCTGTCACTTC-TCCTTACAATGCTGATTTTGATGGTGACGAAATGAACATGCATGTTCCACAGTCGTTTGAAACCAGAGCAGAGGTTCTGGAGCTTATGATGGTCCCTAAGTGTATTGTTTCACCCCAGGCAAATAGGCCTGTAATGGGTATCGTCCAGGATACCCTTTTAGGTTGCCGCAAAGTTACTAAAAGAGATACCTTTATAGAAAAGGTGAATCTGCATGTGCCATTTCATAATTCTTTATCAAATATTTCATGATTTTGCATGATCTAGTAAAGAATGCTTATTTTTTGGCTTGCAGGATGTCTTTATGAACATCTTAATGTGGTGGGAGGATTTTGATGGGAAAGTACCCGCTCCAGTGATTCTTAAACCAAGGCCACTTTGGACTGGAAAGCAAGTGTTTAACCTCATCATACCAAAACAAATAAATCTTTTAAGATACTCCGCATGGCATAATGATTCCGAAAAAGGATACATAACTCCTGGAGATACTCAAGTTAGAATAGAGAAAGGGGAGTTGCTATCTGGTACTCTTTGCAAAAAGACCCTTGGGACGTCCACCGGAAG</genome_strand>
        <mrna_strand>ATACAATCATCACCTTGAACTAGGATATAAG.................................................................................GTTGAGAGGCACTTAAATGATGGAGATTTTGTTCTCTTCAATCGGCAACCCAGTCTACATAAAATGTCTATTATGGGACATAAGATTAAGATCATGCCATACTCAACTTTCTGCTTGAATTTATCTTTCATTTCTTTCTTACAATGCTGATTTTGATGGTGACGAAATGAACATGCATGTTCCACAGTCATTTGAAACCAGAGCATAGGTGCTGGAGCTTATGATGGTCCCTAAGTGTATTGTTTCACCCCAGGC-AA-A---CTGTAATTGGTATCGTCCAGGATACCCTTTTAGGTTGCCGCGAAGTTATTAAAAGAGATATCTTTATAGAAAAG...........................................................................................GATGTCTTTATGAACATCTTAATGTGGTGGGAGGATTTTGATGGGAAAGTACCCGCTCCAGTGATTCTTAAACCAAGGCCACATTGGACTGGAAAGCAAGTGTTTAACCTCATCATACCAAAACAAATAAATCTTTTAAGATATTCTGCATGGCATAATGATTCAGAGAAAGGATACATAACTCCTGGAAATACTCAAGTTATAATAGAGAAAGGGGAGTTGCTATCTGGTACTCTTTGC-AAAAGACTCTTGGGACGTCTGCTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315833" ref_strand="+" ref_description="SGN-E315833 [cTOA-26-A17]">
      <seq>acaattcttggcctcttcctgttaacattcagaggcttgtcttaaatgcccaaaagacatttaaaatagatttccggaggccctctgacatgcatccgatggagatcgtggaagctgttgataagttacaggagaggcttaaggttgttcctggtgatgattatctaagcatggaggctcaaaagaatgctactcttttcttcaatatcttgctccgtagtgccttggctagtaaaagggttctgaaggagtataggcttagtcgagaggcttttgaatgggtagttggtgagatagagtctcgcttcttgcaatcccttgtggcaccaggagagatgattggctgtgttgctgcacagtctattggtgaacctgccacacagatgactcttaatacatttcattatgctggtgtgagtgccaagaatgttactcttggtgtgccaaggttgagggagatcatcaatgttgccaagaaaatcaaaacaccttctctttctgtgtacttaaaacctgaggtaggcaaaacaaaagagagggccaaaactgtccagtgtgcgttagaatataccactttgcggagtgttactcaagccacagaagtgtggtatgatcctgatcctatgagcacccttattgaagaagatgttgaatttgtcaagtcatactatgaaatgccagatgaagagattgaccctgacaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="57684" stop="58990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57984" g_stop="58690" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E315833" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57984" e_stop="58690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCTTGGCCTCTTCCTGTTAACATTCAGAGGCTTGTCTTAAATGCCCAAAAGACATTTAAAATAGATTTCCGGAGGCCCTCTGACATGCATCCGATGGAGATCGTGGAAGCTGTTGATAAGTTACAGGAGAGGCTTAAGGTTGTTCCTGGTGATGATTATCTAAGCATGGAGGCTCAAAAGAATGCTACTCTTTTCTTCAATATCTTGCTCCGTAGTGCCTTGGCTAGTAAAAGGGTTCTGAAGGAGTATAGGCTTAGTCGAGAGGCTTTTGAATGGGTAGTTGGTGAGATAGAGTCTCGCTTCTTGCAATCCCTTGTGGCACCAGGAGAGATGATTGGCTGTGTTGCTGCACAGTCTATTGGTGAACCTGCCACACAGATGACTCTTAATACATTTCATTATGCTGGTGTGAGTGCCAAGAATGTTACTCTTGGTGTGCCAAGGTTGAGGGAGATCATCAATGTTGCCAAGAAAATCAAAACACCTTCTCTTTCTGTGTACTTAAAACCTGAGGTAGGCAAAACAAAAGAGAGGGCCAAAACTGTCCAGTGTGCGTTAGAATATACCACTTTGCGGAGTGTTACTCAAGCCACAGAAGTGTGGTATGATCCTGATCCTATGAGCACCCTTATTGAAGAGGATGTTGAATTTGTCAAGTCATACTATGAAATGCCAGATGAAGAGATTGACCCTGACAAAATC</genome_strand>
        <mrna_strand>ACAATTCTTGGCCTCTTCCTGTTAACATTCAGAGGCTTGTCTTAAATGCCCAAAAGACATTTAAAATAGATTTCCGGAGGCCCTCTGACATGCATCCGATGGAGATCGTGGAAGCTGTTGATAAGTTACAGGAGAGGCTTAAGGTTGTTCCTGGTGATGATTATCTAAGCATGGAGGCTCAAAAGAATGCTACTCTTTTCTTCAATATCTTGCTCCGTAGTGCCTTGGCTAGTAAAAGGGTTCTGAAGGAGTATAGGCTTAGTCGAGAGGCTTTTGAATGGGTAGTTGGTGAGATAGAGTCTCGCTTCTTGCAATCCCTTGTGGCACCAGGAGAGATGATTGGCTGTGTTGCTGCACAGTCTATTGGTGAACCTGCCACACAGATGACTCTTAATACATTTCATTATGCTGGTGTGAGTGCCAAGAATGTTACTCTTGGTGTGCCAAGGTTGAGGGAGATCATCAATGTTGCCAAGAAAATCAAAACACCTTCTCTTTCTGTGTACTTAAAACCTGAGGTAGGCAAAACAAAAGAGAGGGCCAAAACTGTCCAGTGTGCGTTAGAATATACCACTTTGCGGAGTGTTACTCAAGCCACAGAAGTGTGGTATGATCCTGATCCTATGAGCACCCTTATTGAAGAAGATGTTGAATTTGTCAAGTCATACTATGAAATGCCAGATGAAGAGATTGACCCTGACAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700943" ref_strand="+" ref_description="SGN-E700943 [FA14CD08]">
      <seq>gttcattgtatctcaatgaggagatgttgaaacaagctattgagataccattacctagctacatggaaggtggtcttgaatttggcatgacacctggacgttcacctatcagtggaaccccatatcacgatggaatgatgtctccaaattatttgctcagcccaaatatgcggatgtcaccgattacagatgctcaattttctccgtatgtgggtggcatggctttctctcccacttcatcccctggttacagtccatcatcccctggttacagcccatcatcccctggttacagcccgacctctccaggatacagtcccacttcccccggttatagccccacatctcctggttacagccccacttcccccacttatagccccagctcccctggctacagcccgacaagtccagcatattctccaaccagtccttcatactcacccacatcacccagttatagtccaacatctccaagctatagcccaacctcgcctagctacagcccaacatcacctagctacagccctacttctccagcgtacagccccacttctccggcctacagccctacttctccggcctacagccccacttctccatcttacagccccacttcgccatcttacagccccacttcaccttcttacagccccacatcgccttcatatagccccacctcaccctcttatagtccgacttctccatcatatagtccgacttctcctgcttacagtcctacctcccctggttacagcccaacatctcccagctatagcccaacatcaccatcctacagtccaacatcaccaagttacaatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="59154" stop="60578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59454" g_stop="60278" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="825" r_length="825" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E700943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59454" e_stop="60278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTGTATCTCAATGAGGAGATGTTGAAACAAGCTATTGAGATACCATTACCTAGCTACATGGAAGGTGGTCTTGAATTTGGCATGACACCTGGACGTTCACCTATCAGTGGAACCCCATATCACGATGGAATGATGTCTCCAAATTATTTGCTCAGCCCAAATATGCGGATGTCACCGATTACAGATGCTCAATTTTCTCCGTATGTGGGTGGCATGGCTTTCTCTCCCACTTCATCCCCTGGTTACAGTCCATCATCCCCTGGTTACAGCCCATCATCCCCTGGTTACAGCCCGACCTCTCCAGGATACAGTCCCACTTCCCCCGGTTATAGCCCCACATCTCCTGGTTACAGCCCCACTTCCCCCACTTATAGCCCCAGCTCCCCTGGCTACAGCCCGACAAGTCCAGCATATTCTCCAACCAGTCCTTCATACTCACCCACATCACCCAGTTATAGTCCAACATCTCCAAGCTATAGCCCAACCTCGCCTAGCTACAGCCCAACATCACCTAGCTACAGCCCTACTTCTCCAGCGTACAGCCCCACTTCTCCGGCCTACAGCCCTACTTCTCCGGCCTACAGCCCCACTTCTCCATCTTACAGCCCCACTTCGCCATCTTACAGCCCCACTTCACCTTCTTACAGCCCCACATCGCCTTCATATAGCCCCACCTCACCCTCTTATAGTCCGACTTCTCCATCATATAGTCCGACTTCTCCTGCTTACAGTCCTACCTCCCCTGGTTACAGCCCAACATCTCCCAGCTATAGCCCAACATCACCATCCTACAGTCCAACATCACCAAGTTACAATCCCT</genome_strand>
        <mrna_strand>GTTCATTGTATCTCAATGAGGAGATGTTGAAACAAGCTATTGAGATACCATTACCTAGCTACATGGAAGGTGGTCTTGAATTTGGCATGACACCTGGACGTTCACCTATCAGTGGAACCCCATATCACGATGGAATGATGTCTCCAAATTATTTGCTCAGCCCAAATATGCGGATGTCACCGATTACAGATGCTCAATTTTCTCCGTATGTGGGTGGCATGGCTTTCTCTCCCACTTCATCCCCTGGTTACAGTCCATCATCCCCTGGTTACAGCCCATCATCCCCTGGTTACAGCCCGACCTCTCCAGGATACAGTCCCACTTCCCCCGGTTATAGCCCCACATCTCCTGGTTACAGCCCCACTTCCCCCACTTATAGCCCCAGCTCCCCTGGCTACAGCCCGACAAGTCCAGCATATTCTCCAACCAGTCCTTCATACTCACCCACATCACCCAGTTATAGTCCAACATCTCCAAGCTATAGCCCAACCTCGCCTAGCTACAGCCCAACATCACCTAGCTACAGCCCTACTTCTCCAGCGTACAGCCCCACTTCTCCGGCCTACAGCCCTACTTCTCCGGCCTACAGCCCCACTTCTCCATCTTACAGCCCCACTTCGCCATCTTACAGCCCCACTTCACCTTCTTACAGCCCCACATCGCCTTCATATAGCCCCACCTCACCCTCTTATAGTCCGACTTCTCCATCATATAGTCCGACTTCTCCTGCTTACAGTCCTACCTCCCCTGGTTACAGCCCAACATCTCCCAGCTATAGCCCAACATCACCATCCTACAGTCCAACATCACCAAGTTACAATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706713" ref_strand="+" ref_description="SGN-E706713 [FA30CH07]">
      <seq>ccaggatacagtcccacttcccccggttatagccccacatctcctggttacagccccacttcccccacttatagccccagctcccctggctacagcccgacaagtccagcatattctccaaccagtccttcatactcacccacatcacccagttatagtccaacatctccaagctatagcccaacctcgcctagctacagcccaacatcacctagctacagccctacttctccagcgtacagccccacttctccggcctacagccctacttctccggcctacagccccacttctccatcttacagccccacttcgccatcttacagccccacttcaccttcttacagccccacatcgccttcatatagccccacctcaccctcttatagtccgacttctccatcatatagtccgacttctcctgcttacagtcctacctcccctggttacagcccaacatctcccagctatagcccaacatcaccatcctacagtccaacatcaccaagttacaatccctcggcgagatacagcccctcccttgcgtattcgccaactagcccgaagctgtctccttctagtccatacagcccgtcatctccaagttacagtcccacatcaccatcgtactctccaacatctccatcatattctccttcaagcccaacctatagtcccagcagcccatacaacaactcaggtacaagcccagattatagtcccagttctccccagtacagtccaagtgcagggtactcaccaagtgctcctgggtattcaccatcatctactagccagtacaccccacgtgtgagtgagagagaacacagaagtgtcnaagatgacaaggctgggtgatcattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="59459" stop="61447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59759" g_stop="60369" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60370" i_stop="60635" i_length="266">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60636" g_stop="60707" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="683" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60708" i_stop="60889" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60890" g_stop="60946" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="740" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60947" i_stop="61022" i_length="76">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61023" g_stop="61147" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="865" r_length="125" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E706713" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59759" e_stop="60369"/>
          <exon e_start="60636" e_stop="60707"/>
          <exon e_start="60890" e_stop="60946"/>
          <exon e_start="61023" e_stop="61147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGATACAGTCCCACTTCCCCCGGTTATAGCCCCACATCTCCTGGTTACAGCCCCACTTCCCCCACTTATAGCCCCAGCTCCCCTGGCTACAGCCCGACAAGTCCAGCATATTCTCCAACCAGTCCTTCATACTCACCCACATCACCCAGTTATAGTCCAACATCTCCAAGCTATAGCCCAACCTCGCCTAGCTACAGCCCAACATCACCTAGCTACAGCCCTACTTCTCCAGCGTACAGCCCCACTTCTCCGGCCTACAGCCCTACTTCTCCGGCCTACAGCCCCACTTCTCCATCTTACAGCCCCACTTCGCCATCTTACAGCCCCACTTCACCTTCTTACAGCCCCACATCGCCTTCATATAGCCCCACCTCACCCTCTTATAGTCCGACTTCTCCATCATATAGTCCGACTTCTCCTGCTTACAGTCCTACCTCCCCTGGTTACAGCCCAACATCTCCCAGCTATAGCCCAACATCACCATCCTACAGTCCAACATCACCAAGTTACAATCCCTCGGCGAGATACAGCCCCTCCCTTGCGTATTCGCCAACTAGCCCGAAGCTGTCTCCTTCTAGTCCATACAGCCCGTCATCTCCAAGTTACAGGTAAACAACCTTGGTTTGATACATGTGTCTTTGATTCTTCTGCTGAGACAGGAAAGGTTTTTAAGTTTGTTCTGTTTGATAATAATGCAGCGACTTGGTAGCGCCTTAATCTTCTTAATTAGGTCACTTTACCTAAACTTATATCTAGTTTTAGCTTCATAATAACTAGTTAGTTTCTGAAGTTGTCGGGTTTTTGTATTGGTGGATTTCAGATCGGTTCTAGATATATTACTAATGATGTGATTAAATGTTGTCTGTGTTTGCAGTCCCACATCACCATCGTACTCTCCAACATCTCCATCATATTCTCCTTCAAGCCCAACCTATAGTCCCAGCAGGTAAGTGATGTGCATGGGTTCCTTTATTTGATTTACTGCCTGAAAGCTTTCTGGAACTTATATTGTTGGAGGGTGACCTCCTTTTTAGTTTCAATGTGTCTTAGCTGCATGTTGAATTTAATGAGCACTATTAGCTGATCTTTTTTGAAATAATTCTCTTTTTTTTGCCCCTCCAAAATCAGCCCATACAACAACTCAGGTACAAGCCCAGATTATAGTCCCAGTTCTCCCCAGTACAGGTTAGTTGGCTTTTACTTGTCTGGACCGTCTTGCAGTGTGATTTATGTTAGTTTCTAAAATCTGTTTTTTCTTCAGTCCAAGTGCAGGGTACTCACCAAGTGCTCCTGGGTATTCACCATCATCTACTAGCCAGTACACCCCACGTGTGAGTGAGAGAGACAACAGAAGTGTCAAAGATGACAAGGCTGGGTGATCATTAG</genome_strand>
        <mrna_strand>CCAGGATACAGTCCCACTTCCCCCGGTTATAGCCCCACATCTCCTGGTTACAGCCCCACTTCCCCCACTTATAGCCCCAGCTCCCCTGGCTACAGCCCGACAAGTCCAGCATATTCTCCAACCAGTCCTTCATACTCACCCACATCACCCAGTTATAGTCCAACATCTCCAAGCTATAGCCCAACCTCGCCTAGCTACAGCCCAACATCACCTAGCTACAGCCCTACTTCTCCAGCGTACAGCCCCACTTCTCCGGCCTACAGCCCTACTTCTCCGGCCTACAGCCCCACTTCTCCATCTTACAGCCCCACTTCGCCATCTTACAGCCCCACTTCACCTTCTTACAGCCCCACATCGCCTTCATATAGCCCCACCTCACCCTCTTATAGTCCGACTTCTCCATCATATAGTCCGACTTCTCCTGCTTACAGTCCTACCTCCCCTGGTTACAGCCCAACATCTCCCAGCTATAGCCCAACATCACCATCCTACAGTCCAACATCACCAAGTTACAATCCCTCGGCGAGATACAGCCCCTCCCTTGCGTATTCGCCAACTAGCCCGAAGCTGTCTCCTTCTAGTCCATACAGCCCGTCATCTCCAAGTTACAG..........................................................................................................................................................................................................................................................................TCCCACATCACCATCGTACTCTCCAACATCTCCATCATATTCTCCTTCAAGCCCAACCTATAGTCCCAGCAG......................................................................................................................................................................................CCCATACAACAACTCAGGTACAAGCCCAGATTATAGTCCCAGTTCTCCCCAGTACAG............................................................................TCCAAGTGCAGGGTACTCACCAAGTGCTCCTGGGTATTCACCATCATCTACTAGCCAGTACACCCCACGTGTGAGTGAGAGAGAACACAGAAGTGTCNAAGATGACAAGGCTGGGTGATCATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590431" ref_strand="+" ref_description="SGN-E590431 [44027]">
      <seq>cctacttctccaggcatacagccccacttctccggcctacagccccacttctccggcatacagccccacttcgccatcttacagccccacttcaccttcttacagccccacatcaccttcatatagccccacctcaccctcttatagtccgacttctccatcatatagtccgacttctcctgcatacagtcctacctcccctggttacagcccaacatctcccagctatagcccaacatcaccatcctacagtcctacgtcaccaagttacaatccctcggcgagatacagcccctcccttgcatattcgccaaccagcccgaagctgtctccttctagtccatacagcccgtcatctccaagttacagtcccacatcaccatcgtactctccaacatctccatcatattctccttcaagcccaacctatagtcccagcagcccatacaacaactccagtacaagcccagattatagtcccagttctccccagtacagtccaagtgcaggtactcaccaagtgctcctgggtattcaccatcatctactagccagcacaccccgcgtgtaagtgcagagagacaacaagagtgtcaaagatgacaaggctggttgatcattagggaataaagttgtatttactttgagtggcttattacgtcattactgtgctttctgaagcgcgtaagattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="59703" stop="61545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60002" g_stop="60369" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60370" i_stop="60635" i_length="266">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60636" g_stop="60707" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="441" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60708" i_stop="60889" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60890" g_stop="60946" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="498" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60947" i_stop="61022" i_length="76">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61023" g_stop="61162" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="637" r_length="139" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E590431" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60002" e_stop="60369"/>
          <exon e_start="60636" e_stop="60707"/>
          <exon e_start="60890" e_stop="60946"/>
          <exon e_start="61023" e_stop="61162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACTTCTCC-GGCCTACAGCCCTACTTCTCCGGCCTACAGCCCCACTTCTCCATCTTACAGCCCCACTTCGCCATCTTACAGCCCCACTTCACCTTCTTACAGCCCCACATCGCCTTCATATAGCCCCACCTCACCCTCTTATAGTCCGACTTCTCCATCATATAGTCCGACTTCTCCTGCTTACAGTCCTACCTCCCCTGGTTACAGCCCAACATCTCCCAGCTATAGCCCAACATCACCATCCTACAGTCCAACATCACCAAGTTACAATCCCTCGGCGAGATACAGCCCCTCCCTTGCGTATTCGCCAACTAGCCCGAAGCTGTCTCCTTCTAGTCCATACAGCCCGTCATCTCCAAGTTACAGGTAAACAACCTTGGTTTGATACATGTGTCTTTGATTCTTCTGCTGAGACAGGAAAGGTTTTTAAGTTTGTTCTGTTTGATAATAATGCAGCGACTTGGTAGCGCCTTAATCTTCTTAATTAGGTCACTTTACCTAAACTTATATCTAGTTTTAGCTTCATAATAACTAGTTAGTTTCTGAAGTTGTCGGGTTTTTGTATTGGTGGATTTCAGATCGGTTCTAGATATATTACTAATGATGTGATTAAATGTTGTCTGTGTTTGCAGTCCCACATCACCATCGTACTCTCCAACATCTCCATCATATTCTCCTTCAAGCCCAACCTATAGTCCCAGCAGGTAAGTGATGTGCATGGGTTCCTTTATTTGATTTACTGCCTGAAAGCTTTCTGGAACTTATATTGTTGGAGGGTGACCTCCTTTTTAGTTTCAATGTGTCTTAGCTGCATGTTGAATTTAATGAGCACTATTAGCTGATCTTTTTTGAAATAATTCTCTTTTTTTTGCCCCTCCAAAATCAGCCCATACAACAACTCAGGTACAAGCCCAGATTATAGTCCCAGTTCTCCCCAGTACAGGTTAGTTGGCTTTTACTTGTCTGGACCGTCTTGCAGTGTGATTTATGTTAGTTTCTAAAATCTGTTTTTTCTTCAGTCCAAGTGCAGGGTACTCACCAAGTGCTCCTGGGTATTCACCATCATCTACTAGCCAGTACACCCCACGTGTGAGTG-AGAGAGACAACAGAAGTGTCAAAGATGACAAGGCTGGGTGATCATTAGGGAGGGAACGAAGTT</genome_strand>
        <mrna_strand>CCTACTTCTCCAGGCATACAGCCCCACTTCTCCGGCCTACAGCCCCACTTCTCCGGCATACAGCCCCACTTCGCCATCTTACAGCCCCACTTCACCTTCTTACAGCCCCACATCACCTTCATATAGCCCCACCTCACCCTCTTATAGTCCGACTTCTCCATCATATAGTCCGACTTCTCCTGCATACAGTCCTACCTCCCCTGGTTACAGCCCAACATCTCCCAGCTATAGCCCAACATCACCATCCTACAGTCCTACGTCACCAAGTTACAATCCCTCGGCGAGATACAGCCCCTCCCTTGCATATTCGCCAACCAGCCCGAAGCTGTCTCCTTCTAGTCCATACAGCCCGTCATCTCCAAGTTACAG..........................................................................................................................................................................................................................................................................TCCCACATCACCATCGTACTCTCCAACATCTCCATCATATTCTCCTTCAAGCCCAACCTATAGTCCCAGCAG......................................................................................................................................................................................CCCATACAACAACTCCAGTACAAGCCCAGATTATAGTCCCAGTTCTCCCCAGTACAG............................................................................TCCAAGTGCA-GGTACTCACCAAGTGCTCCTGGGTATTCACCATCATCTACTAGCCAGCACACCCCGCGTGTAAGTGCAGAGAGACAACAAGAGTGTCAAAGATGACAAGGCTGGTTGATCATTAGGGA-ATAAAGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E598470" ref_strand="+" ref_description="SGN-E598470 [74142]">
      <seq>cgaaactgtctccttctagtccatacagcccgtcatctccaagttacagtcccacatcaccatcgtactctccaacatctccatcatattctccttcaagcccaacctatagtcccagcagcccatacaacaactcaggtacaagcccagattatagtcccagttctccccagtacagtccaagtgcagggtactcaccaagtgctcctgggtattcaccatcatctactagccagtacaccccacgtgtaagtgagagagacaacaagagtgtcaaagatgacaaggctggttgatcattagggaataaagttgtatttactttgcactttaatctttcagtggcttattagtcattactgtgctttctgaaggcgtaagattgctgtataatatttttcgaaaaaaaaaaaaaaaaaaactcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="60021" stop="61568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60321" g_stop="60369" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60370" i_stop="60635" i_length="266">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60636" g_stop="60707" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="121" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60708" i_stop="60889" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60890" g_stop="60946" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="178" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60947" i_stop="61022" i_length="76">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61023" g_stop="61261" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="404" r_length="226" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="422"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E598470" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60321" e_stop="60369"/>
          <exon e_start="60636" e_stop="60707"/>
          <exon e_start="60890" e_stop="60946"/>
          <exon e_start="61023" e_stop="61261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCTGTCTCCTTCTAGTCCATACAGCCCGTCATCTCCAAGTTACAGGTAAACAACCTTGGTTTGATACATGTGTCTTTGATTCTTCTGCTGAGACAGGAAAGGTTTTTAAGTTTGTTCTGTTTGATAATAATGCAGCGACTTGGTAGCGCCTTAATCTTCTTAATTAGGTCACTTTACCTAAACTTATATCTAGTTTTAGCTTCATAATAACTAGTTAGTTTCTGAAGTTGTCGGGTTTTTGTATTGGTGGATTTCAGATCGGTTCTAGATATATTACTAATGATGTGATTAAATGTTGTCTGTGTTTGCAGTCCCACATCACCATCGTACTCTCCAACATCTCCATCATATTCTCCTTCAAGCCCAACCTATAGTCCCAGCAGGTAAGTGATGTGCATGGGTTCCTTTATTTGATTTACTGCCTGAAAGCTTTCTGGAACTTATATTGTTGGAGGGTGACCTCCTTTTTAGTTTCAATGTGTCTTAGCTGCATGTTGAATTTAATGAGCACTATTAGCTGATCTTTTTTGAAATAATTCTCTTTTTTTTGCCCCTCCAAAATCAGCCCATACAACAACTCAGGTACAAGCCCAGATTATAGTCCCAGTTCTCCCCAGTACAGGTTAGTTGGCTTTTACTTGTCTGGACCGTCTTGCAGTGTGATTTATGTTAGTTTCTAAAATCTGTTTTTTCTTCAGTCCAAGTGCAGGGTACTCACCAAGTGCTCCTGGGTATTCACCATCATCTACTAGCCAGTACACCCCACGTGTGAGTGAGAGAGACAACAGAAGTGTCAAAGATGACAAGGCTGGGTGATCATTAGGGAGGGAACGAAGTTGTATTTACTTGAAACTTTAATCTTTCAGTTGCTAAACTGGCTCATTAGTCATTACTGTGCTTTCTGAAGGCATAAGATTGCTGTATAATATTTTTCGAA</genome_strand>
        <mrna_strand>CGAAACTGTCTCCTTCTAGTCCATACAGCCCGTCATCTCCAAGTTACAG..........................................................................................................................................................................................................................................................................TCCCACATCACCATCGTACTCTCCAACATCTCCATCATATTCTCCTTCAAGCCCAACCTATAGTCCCAGCAG......................................................................................................................................................................................CCCATACAACAACTCAGGTACAAGCCCAGATTATAGTCCCAGTTCTCCCCAGTACAG............................................................................TCCAAGTGCAGGGTACTCACCAAGTGCTCCTGGGTATTCACCATCATCTACTAGCCAGTACACCCCACGTGTAAGTGAGAGAGACAACAAGAGTGTCAAAGATGACAAGGCTGGTTGATCATT----AGGGAATAAAGTTGTATTTACTTTGCACTTTAATCTTTCA---G------TGGCTTATTAGTCATTACTGTGCTTTCTGAAGGCGTAAGATTGCTGTATAATATTTTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229673" ref_strand="+" ref_description="SGN-E229673 [cLEL-4-O9](-)">
      <seq>gcccagattatagtcccagttctccccagtacagtccaagtgcagggtactcagcaagtgctcctgggtattcaccatcatctactagtcagtacaccccacgtgtgagtgagagagacaacagaagtgtcaaagatgacaaggctgggtgatcattagggagggaacgaagttgtatttacttgaaactttaatctttcagttgctaaactggctcattagtcattactgtgctttctgaaggcataagattgctgtataatatttttcgaagaacacaggctttgttctagtttctgggtttctcttttccagtctagaatactttgggattatattatataaagatgcagaaaacatggttccttcttttaaagtagtgtgagaacttaggtgttttcgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="60613" stop="61702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60913" g_stop="60946" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60947" i_stop="61022" i_length="76">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61023" g_stop="61401" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="413" r_length="379" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="423"/>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E229673" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60913" e_stop="60946"/>
          <exon e_start="61023" e_stop="61401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAGATTATAGTCCCAGTTCTCCCCAGTACAGGTTAGTTGGCTTTTACTTGTCTGGACCGTCTTGCAGTGTGATTTATGTTAGTTTCTAAAATCTGTTTTTTCTTCAGTCCAAGTGCAGGGTACTCACCAAGTGCTCCTGGGTATTCACCATCATCTACTAGCCAGTACACCCCACGTGTGAGTGAGAGAGACAACAGAAGTGTCAAAGATGACAAGGCTGGGTGATCATTAGGGAGGGAACGAAGTTGTATTTACTTGAAACTTTAATCTTTCAGTTGCTAAACTGGCTCATTAGTCATTACTGTGCTTTCTGAAGGCATAAGATTGCTGTATAATATTTTTCGAAGAACACAGGCTTTGTTCTAGTTTCTGGGTTTCTCTTTTCCAGTCTAGAATACTTTGGGATTATATTATATAAAGATGCAGAAAACATGGTTCCTTCTTTTAAAGTAGTGTGAGAACTTAGGTGTTTTCGAATAAAGGAAA</genome_strand>
        <mrna_strand>GCCCAGATTATAGTCCCAGTTCTCCCCAGTACAG............................................................................TCCAAGTGCAGGGTACTCAGCAAGTGCTCCTGGGTATTCACCATCATCTACTAGTCAGTACACCCCACGTGTGAGTGAGAGAGACAACAGAAGTGTCAAAGATGACAAGGCTGGGTGATCATTAGGGAGGGAACGAAGTTGTATTTACTTGAAACTTTAATCTTTCAGTTGCTAAACTGGCTCATTAGTCATTACTGTGCTTTCTGAAGGCATAAGATTGCTGTATAATATTTTTCGAAGAACACAGGCTTTGTTCTAGTTTCTGGGTTTCTCTTTTCCAGTCTAGAATACTTTGGGATTATATTATATAAAGATGCAGAAAACATGGTTCCTTCTTTTAAAGTAGTGTGAGAACTTAGGTGTTTTCGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740294" ref_strand="+" ref_description="SGN-E740294 [LC20DD05]">
      <seq>acctccaccgctatggtgtcacctgttcggagtcgtaaaatctcagcaaaagccaacaacttacagttattcatcacaacgtgacgccacccatttttctcttctatcttcaaacacaacctttcttcttcttctctgtgaagatggcagaaaattcatctcaggaaaacttcatctgtttacatggagatttggagcttcacatcattcaagcccgtcatttacccaacatggacttaacttctgagcgtatacgccgctgcttcacagcctgtgatgtctgccggaaacctcaaactggatccactgccgacgacggaaacggcgaactacccaatgtgaaaagcaccgaccagaaaatccaccaccggagtataatcactagtgacccatatgttgctgtgtgtgcaccccataccgctcttgctcgtacacgtgttatacccaattcacaaaaccctgtttgggatgagcatttccgtatccctttagcacaccctatggactgcttggattttcgtgttaaagatgatgatgttttcggtgctcaagttatgggtaaagttacaatcccggcggaaaagatagcctccggtgaggtggtttccggctggtttcccgtcattggcgcttcagggaaatctccaaaacccgatacggctctccggttatggatgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="63245" stop="64526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63545" g_stop="64226" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="682" r_length="682" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E740294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63545" e_stop="64226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCCACCGCTATGGTGTCACCTGTTCGGAGTCGTAAAATCTCAGCAAAAGCCAACAACTTACAGTTATTCATCACAACGTGACGCCACCCATTTTTCTCTTCTATCTTCAAACACAACCTTTCTTCTTCTTCTCTGTGAAGATGGCAGAAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATT</genome_strand>
        <mrna_strand>ACCTCCACCGCTATGGTGTCACCTGTTCGGAGTCGTAAAATCTCAGCAAAAGCCAACAACTTACAGTTATTCATCACAACGTGACGCCACCCATTTTTCTCTTCTATCTTCAAACACAACCTTTCTTCTTCTTCTCTGTGAAGATGGCAGAAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736922" ref_strand="+" ref_description="SGN-E736922 [LC07DC05]">
      <seq>cgctatggtgtcacctgttcggagtcgtaaaatctcagcaaaagccaacaacttacagttattcatcacaacgtgacgccacccatttttctcttctatcttcaaacacaacctttcttcttcttctctgtgaagatggcagaaaattcatctcaggaaaacttcatctgtttacatggagatttggagcttcacatcattcaagcccgtcatttacccaacatggacttaacttctgagcgtatacgccgctgcttcacagcctgtgatgtctgccggaaacctcaaactggatccactgccgacgacggaaacggcgaactacccaatgtgaaaagcaccgaccagaaaatccaccaccggagtataatcactagtgacccatatgttgctgtgtgtgcaccccataccgctcttgctcgtacacgtgttatacccaattcacaaaaccctgtttgggatgagcatttccgtatccctttagcacaccctatggactgcttggattttcgtgttaaagatgatgatgttttcggtgctcaagttatgggtaaagttacaatcccggcggaaaagatagcctccggtgaggtggtttccggctggtttcccgtcattggcgcttcagggaaatctccaaaacccgatacggctctccggttatggatgaaattcgttccatatgatacaaacccattgtataagcgaggaattgcttcagatcctcagtatttaggggtaaggaatacgtacttcccattgagaaaagggagttccgtgaagctataccaagatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="63253" stop="64651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63553" g_stop="64351" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="799" r_length="799" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E736922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63553" e_stop="64351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTATGGTGTCACCTGTTCGGAGTCGTAAAATCTCAGCAAAAGCCAACAACTTACAGTTATTCATCACAACGTGACGCCACCCATTTTTCTCTTCTATCTTCAAACACAACCTTTCTTCTTCTTCTCTGTGAAGATGGCAGAAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTC</genome_strand>
        <mrna_strand>CGCTATGGTGTCACCTGTTCGGAGTCGTAAAATCTCAGCAAAAGCCAACAACTTACAGTTATTCATCACAACGTGACGCCACCCATTTTTCTCTTCTATCTTCAAACACAACCTTTCTTCTTCTTCTCTGTGAAGATGGCAGAAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279310" ref_strand="+" ref_description="SGN-E279310 [cLEL-4-L11](-)">
      <seq>atcccaaacagggttttgtgaattgggtataacacgtgtacgagcaagagcggtatggggtgcacacacagcaacatatgggtcactagtgattatactccggtggtggattttctggtcggtgcttttcacattgggtagttcgccgtttccgtcgtcggcagtggatccagtttgaggtttccggcagacatcacaggctgtgaagcagcggcgtatacgctcagaagttaagtccatgttgggtaaatgacgggcttgaatgatgtgaagctccaaatctccatgtaaacagatgaagttttcctgagatgaattttctgccatcttcacagagaagaagaagaaaggttgtgtttgaagatagaagagagaaatgggtggcgtcacgttgtgatgaataactgtaagttgttggcttttgctgagattttacgactccgctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="-" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="64314" stop="63264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64014" g_stop="63565" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="-" ref_id="SGN-E279310" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64014" e_stop="63565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAACAGGGTTTTGTGAATTGGGTATAACACGTGTACGAGCAAGAGCGGTATGGGGTGCACACACAGCAACATATGGGTCACTAGTGATTATACTCCGGTGGTGGATTTTCTGGTCGGTGCTTTTCACATTGGGTAGTTCGCCGTTTCCGTCGTCGGCAGTGGATCCAGTTTGAGGTTTCCGGCAGACATCACAGGCTGTGAAGCAGCGGCGTATACGCTCAGAAGTTAAGTCCATGTTGGGTAAATGACGGGCTTGAATGATGTGAAGCTCCAAATCTCCATGTAAACAGATGAAGTTTTCCTGAGATGAATTTTCTGCCATCTTCACAGAGAAGAAGAAGAAAGGTTGTGTTTGAAGATAGAAGAGAAAAATGGGTGGCGTCACGTTGTGATGAATAACTGTAAGTTGTTGGCTTTTGCTGAGATTTTACGACTCCGAACAGGT</genome_strand>
        <mrna_strand>ATCCCAAACAGGGTTTTGTGAATTGGGTATAACACGTGTACGAGCAAGAGCGGTATGGGGTGCACACACAGCAACATATGGGTCACTAGTGATTATACTCCGGTGGTGGATTTTCTGGTCGGTGCTTTTCACATTGGGTAGTTCGCCGTTTCCGTCGTCGGCAGTGGATCCAGTTTGAGGTTTCCGGCAGACATCACAGGCTGTGAAGCAGCGGCGTATACGCTCAGAAGTTAAGTCCATGTTGGGTAAATGACGGGCTTGAATGATGTGAAGCTCCAAATCTCCATGTAAACAGATGAAGTTTTCCTGAGATGAATTTTCTGCCATCTTCACAGAGAAGAAGAAGAAAGGTTGTGTTTGAAGATAGAAGAGAGAAATGGGTGGCGTCACGTTGTGATGAATAACTGTAAGTTGTTGGCTTTTGCTGAGATTTTACGACTCCGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328278" ref_strand="+" ref_description="SGN-E328278 [cTOC-21-D18]">
      <seq>aaaattcatctcaggaaaacttcatctgtttacatggagatttggagcttcacatcattcaagcccgtcatttacccaacatggacttaacttctgagcgtatacgccgctgcttcacagcctgtgatgtctgccggaaacctcaaactggatccactgccgacgacggaaacggcgaactacccaatgtgaaaagcaccgaccagaaaatccaccaccggagtataatcactagtgacccatatgttgctgtgtgtgcaccccataccgctcttgctcgtacacgtgttatacccaattcacaaaaccctgtttgggatgagcatttccgtatccctttagcacaccctatggactgcttggattttcgtgttaaagatgatgatgttttcggtgctcaagttatgggtaaagttacaatcccggcggaaaagatagcctccggtgaggtggtttccggctggtttcccgtcattggcgcttcagggaaatctccaaaacccgatacggctctccggttatggatgaaattcgttccatatgatacaaacccattgtataagcgaggaattgcttcagatcctcagtatttaggggtaaggaatacgtacttcccattgagaaaagggagttccgtgaagctataccaagatgctcacgttagcgataagtttaagctgccggaaatccagttggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="63395" stop="64693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63695" g_stop="64393" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E328278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63695" e_stop="64393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTCACGTTAGCGATAAGTTTAAGCTGCCGGAAATCCAGTTGGAAA</genome_strand>
        <mrna_strand>AAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTCACGTTAGCGATAAGTTTAAGCTGCCGGAAATCCAGTTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604428" ref_strand="+" ref_description="SGN-E604428 [74563]">
      <seq>ggaaaacttcatctgtttacatggagatttggagcttcacatcattcaagcccgtcatatacccaacatggacttaacttctgagcgtatacgccggtgcttcaccgactgtgatgtctgccggaaacctcaaactaaatccactgccgacgacggaaacggcgaactacccaatgtgacaagcaccgaccagaaaatccaccaccggagcataatcactagtgacccatatgttactgtgtgtgcaccccataccgctcttgcccgtacacgtgttctacccaattcacaaaaccctgtttgggatgagcatttccgtatccctttagcacaccctatggactgcttggacttacgcgttacagatgatgatgtttacggagctcacgttatgggtaaagttacaattctggcggaaaagatagcctccggtgaggtggtttccggctggttacccggtaattgacgcttcagggaaatctccaaaacccgacacggctctccggttaatggatgacattcgttccatatgatacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="63408" stop="64544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63708" g_stop="64244" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E604428" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63708" e_stop="64244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCC-GTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTT-ATGGATGAAATTCGTTCCATATGATACAAA</genome_strand>
        <mrna_strand>GGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATATACCCAACATGGACTTAACTTCTGAGCGTATACGCCGGTGCTTCACCGACTGTGATGTCTGCCGGAAACCTCAAACTAAATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGACAAGCACCGACCAGAAAATCCACCACCGGAGCATAATCACTAGTGACCCATATGTTACTGTGTGTGCACCCCATACCGCTCTTGCCCGTACACGTGTTCTACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGACTTACGCGTTACAGATGATGATGTTTACGGAGCTCACGTTATGGGTAAAGTTACAATTCTGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTACCCGGTAATTGACGCTTCAGGGAAATCTCCAAAACCCGACACGGCTCTCCGGTTAATGGATGACATTCGTTCCATATGATACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437616" ref_strand="+" ref_description="SGN-E437616 [cSTA-4-K20]">
      <seq>gaattggcacgaggtttacatggagatatggagcttcacatcattcaagcccgtcatttacccaacatggacttaacttctgagcgtatacgccggtgcttcaccgcctgtgatgtctgccggaaacctcaaactaaatccactgccgacgacggaaacggcgaactacccaatgtgaaaagcaccgaccagaaaatccaccaccggagcataatcactagtgacccatatgttactgtgtgtgcaccccataccgctcttgcccgtacacgtgttctacccaattcacaaaaccctgtttgggatgagcatttccgtatccctttagcacaccctatggactgcttggactttcgcgttaaagatgatgatgttttcggagctcaagttatgggtaaagttacaattctggcggaaaagatagcctccggtgaggtggtttccggctggtttcccgtaattgacgcttcagggaaatctccaaaacccgacacggctctccggttatggatgaaattcgttccatatgatacaaacccattgtataagcgaggaattgcttcagatcctcagtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="63422" stop="64586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63709" g_stop="64286" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E437616" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63709" e_stop="64286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTT</genome_strand>
        <mrna_strand>GAATTGGCACGAGGTTTACATGGAGATATGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGGTGCTTCACCGCCTGTGATGTCTGCCGGAAACCTCAAACTAAATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGCATAATCACTAGTGACCCATATGTTACTGTGTGTGCACCCCATACCGCTCTTGCCCGTACACGTGTTCTACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGACTTTCGCGTTAAAGATGATGATGTTTTCGGAGCTCAAGTTATGGGTAAAGTTACAATTCTGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTAATTGACGCTTCAGGGAAATCTCCAAAACCCGACACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244982" ref_strand="+" ref_description="SGN-E244982 [cLEF-2-J17]">
      <seq>cattggcgcttcagggaaatctccaaaacccgatacggctctccggttatggatgaaattcgttccatatgatacaaacccattgtataagcgaggaattgcttcagatcctcagtatttaggggtaaggaatacgtacttcccattgagaaaagggagttccgtgaagctataccaagatgctcacgttagcgataagtttaagctgccggaaatccagttggaaaacaatacaacctttgaacacaacaaatgctgggaagatatatgttatgcaattacagaggctcatcacttgatttacattgctgggtggactgtatttcacatagtcaagttagtttgagagcccaccaggccattgccgcgcggcggtgacttgacacttggtgaattacttaaatataagtcccaaaaaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="63867" stop="64888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64167" g_stop="64589" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E244982" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64167" e_stop="64589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTCACGTTAGCGATAAGTTTAAGCTGCCGGAAATCCAGTTGGAAAACAATACAACCTTTGAACACAACAAATGCTGGGAAGATATATGTTATGCAATTACAGAGGCTCATCACTTGATTTACATTGTTGGGTGGTCTGTTTTTCACAAAGTCAAGTTAGTTCGAGAGCCCACCAGGCCATTGCCGCGCGGCGGTGACTTGACACTTGGTGAATTACTTAAATATAAGTCCCAAGAGGGGGT</genome_strand>
        <mrna_strand>CATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTCACGTTAGCGATAAGTTTAAGCTGCCGGAAATCCAGTTGGAAAACAATACAACCTTTGAACACAACAAATGCTGGGAAGATATATGTTATGCAATTACAGAGGCTCATCACTTGATTTACATTGCTGGGTGGACTGTATTTCACATAGTCAAGTTAGTTTGAGAGCCCACCAGGCCATTGCCGCGCGGCGGTGACTTGACACTTGGTGAATTACTTAAATATAAGTCCCAAAAAGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282448" ref_strand="+" ref_description="SGN-E282448 [cLER-18-E15]">
      <seq>ttacattgttgggtggtctgtttttcacaaagtcaagttagttcgagagcccaccaggccattgccgcgcggcggtgacttgacacttggtgaattacttaaatataagtcccaagagggggtgcgggttctgttgttagtttgggatgataaaacttcccatgataagttctttattaacacggcaggagtaatgggaactcacgacgaggaaaccaggaagttttttaagcattcctctgtaatatgcgttttgtcaccacgttatgctagcagtaagctcagccttatcaagcaacaggtagttggaaccatgtttacacaccatcagaagtgtgttctggttgatacgcaggcacctggtaataatagaaaagtaacagcattcttaggaggtctggatctctgcgatggtcgatatgatacacctgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="64167" stop="66002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64467" g_stop="64650" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64651" i_stop="64921" i_length="271">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64922" g_stop="65038" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="301" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65039" i_stop="65568" i_length="530">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65569" g_stop="65702" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="435" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E282448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64467" e_stop="64650"/>
          <exon e_start="64922" e_stop="65038"/>
          <exon e_start="65569" e_stop="65702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTGTTGGGTGGTCTGTTTTTCACAAAGTCAAGTTAGTTCGAGAGCCCACCAGGCCATTGCCGCGCGGCGGTGACTTGACACTTGGTGAATTACTTAAATATAAGTCCCAAGAGGGGGTGCGGGTTCTGTTGTTAGTTTGGGATGATAAAACTTCCCATGATAAGTTCTTTATTAACACGGTATGGATATTTAAACTATTACTTACTGATTTCTTTGATAAACTATATTGAAGTAATTCTGGATACTTTATTGGCTGTTATTTTAAGTATGTGCTCAGATAGCTGTAAGATAAGAATATTGTGTGAGTGCTGCTAGTTGTTATTATTTTAATGGTATGCTCAATTTACATTATAATGAATTGTTTTTTCTGTTTGCTTTCAAATGACTGTCTCATTAGTTGTAGTTCTTGTTGGTCAATCTCACAGCAGTTTGAAATGGCATTGGATGCAGGCAGGAGTAATGGGAACTCACGACGAGGAAACCAGGAAGTTTTTTAAGCATTCCTCTGTAATATGCGTTTTGTCACCACGTTATGCTAGCAGTAAGCTCAGCCTTATCAAGCAACAGGTTATCTTTCATAACCATTGACACATTTGTTAGATTATTTGTACTTTGAGATCTTCTGATCATTGAATTCTCTATGTGCCCGTGAAGTTATTGCCCCTTAAACCATGCCTTCAAATAGTTTGCTTTCAGAATCAGGCGTTCCATTTGATGGAGGGTGTTCTTTCTTATGACTTTGTAGAAAATATTCTTATAAGTTTGCGGAAGAAAGATAGGGCTTAAGGAAGAGCTTCGTCTCAGCAGAAAAAACATAAATATGAATGCTTGCCTTCTGTGGCTTGACAAAATATTTTCATGAATGAGTGGAATAAAGTAATATAATTCTTCTAGAGCAGCAGTACTTGAAGTTTTAATGGGATGTGTGAAGCTATATTTTGTATGGTCGGCATAAATATTCCCTTCTGAGAGTTTCTTCAATCCTTTTATGAAATATAATATCAATTACGCCAATTTCCTTACCTCTGGATTCTTTATTTCCCCTCTACCAATATTGCAATGAAGTGATTTTGTGAGCTGAATATTCTTGCTTCCAGGTAGTTGGAACCATGTTTACACACCATCAGAAGTGTGTTCTGGTTGATACGCAGGCACCTGGTAATAATAGAAAAGTAACAGCATTCTTAGGAGGTCTGGATCTCTGCGATGGTCGATATGATACACCTGAACA</genome_strand>
        <mrna_strand>TTACATTGTTGGGTGGTCTGTTTTTCACAAAGTCAAGTTAGTTCGAGAGCCCACCAGGCCATTGCCGCGCGGCGGTGACTTGACACTTGGTGAATTACTTAAATATAAGTCCCAAGAGGGGGTGCGGGTTCTGTTGTTAGTTTGGGATGATAAAACTTCCCATGATAAGTTCTTTATTAACACG...............................................................................................................................................................................................................................................................................GCAGGAGTAATGGGAACTCACGACGAGGAAACCAGGAAGTTTTTTAAGCATTCCTCTGTAATATGCGTTTTGTCACCACGTTATGCTAGCAGTAAGCTCAGCCTTATCAAGCAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGGAACCATGTTTACACACCATCAGAAGTGTGTTCTGGTTGATACGCAGGCACCTGGTAATAATAGAAAAGTAACAGCATTCTTAGGAGGTCTGGATCTCTGCGATGGTCGATATGATACACCTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288786" ref_strand="+" ref_description="SGN-E288786 [cLES-17-A16]">
      <seq>tcttaggaggtctggatctctgcgatggtcgatatgatacacctgagacatcgcttattccatgaccttgacactgtatttaaagacgacgttcatcagcctacatttgctgcagggaccaaggctccaaggcaaccatggcatgatttgcattgcagaattgatggacctgctgtatatgatgtgcttataaattttgctcaacgatggaggaaagcgacaaagtggagggaattcaagttctttaagaaaacaatgactcattggcatgatgatgctatgctaaaaattgagcgtatctcatggatactcagccctgcttttgctgttttaaaggatagtactgcaatcccagaggatgatcctaaactacatgtatatggggaagatcattcagaaaattggcatgtacagatcttccgttccattgattctggttcagtgcagggctttcccaagacgattgacgttgcgcaggcacagaaccttgtctgctcaaaaaatctgatggtggataaaagcattgaagccgcatatattcaggcaataagatcagctcagcattttatatatattgaaaatcagtattttcttggatcgtcatatgctcgggaatcatacaaagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="65354" stop="68441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65654" g_stop="65763" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65764" i_stop="67412" i_length="1649">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67413" g_stop="67715" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="414" r_length="303" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67716" i_stop="67795" i_length="80">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67796" g_stop="67864" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="483" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67865" i_stop="67995" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67996" g_stop="68141" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="629" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E288786" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65654" e_stop="65763"/>
          <exon e_start="67413" e_stop="67715"/>
          <exon e_start="67796" e_stop="67864"/>
          <exon e_start="67996" e_stop="68141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAGGAGGTCTGGATCTCTGCGATGGTCGATATGATACACCTGA-ACATCGCTTATTCCATGACCTTGACACTGTATTTAAAGACGACGTTCATCAGCCTACATTTCCTGTGAGTTGTTTTTCTTCTCAATTTTTTCCTAGACATTTCTGATATCTGTCATATGTCTCTGGGATGATTCTTTACTTTACATAGTTGATAGTTTTCCATAACTGTGAAGATGGTTAAGGGATCAGCACTCTCGAGTGTAGATTCACAAAAAAACATTTTTACTATTCTTGCTGATTTATTCATTTCAGTATTTTTCTTTTCTACAGTATTTTCAGCATAGGTTTTACTCTTCTATTTGTCAAATCTGTTTATGAAGCCGCTTTTCTTGAGCTGAGGGTCTATCCGTAACAACTTCTCTACCTCACACAAGGTAGGGGTAAGGTCTATCCGTAAACTTAGCATGTTGTAGTTGCTAAGTTTTTCCTTGCAGAATTTGGAACTACAATGATTGCATTCAGCAGACATTGAAACTTAGCATGTTGTAGTTGCAAATGGCTAGTGTAGTTAATGCTGGTGGGATGTTGTGGGCACTAACAACAGAATTATTATACTTAATTATCAATAGGGGTAACAGCAGATTTATCATCACATATTATTGTGACCAAGTTTTCTAGAAAGAAAGAGCTTTAGGTTTATGTAAAGTATCTAATAAATTCTTCTTCTGAAATAACAAATGTAAGCCATCTTTTCATATTTTGGGAGACAATTTGCTGCTAGATATTTAGTTAGTAGCTATTATCACTCACATAATCTAAATTTTAACAAGCGAAGGGCAGATCTGTAGTTTACAGTGGTCCAAGCTCTCAAGTATGTTGTAGTTAGTTGCGGAGGAAAGCCGGAAAACATATAATTTCTCCACTTACGTAATTGCTGTAGATGCTTTCTTCAGGAGATTTATTAGCTGTTTAAAAATGAAAGTTAAAAGGTGAATACTGAAACTTATGTCCCTGGATTCTGAATATTAACCTTTCAAACTTAAATATGGTTCTTGACATCCATAATCTTTGTAATTATTTTCCAGAAGTTTTATGAGCTTTTGATTGCTATTTCTTCTTTCATTTCTCATTATCATGATTTCTTTCCTTGGATGCATTTTTTGAAAAATTGAACTTACCTATTACTGACTCTGTATTGGTCGTGTGTTAGTCATTAGCCTTAATATAGATAAGCCTATTTCATCTCCAATGCTCAATCTGTAACATAAATCTGTTAGCAATGGAATTATTGAAAATAATTGTTCATTAACAAATAGCTGTATAATACAATATTCAAGAACTGTGATAAAATAAATTCCAAAATAAACCATGGCATAAGAAATTTTGTAGATTATTATCGATATGTTAGTGATTGATTTAATGTATTTCAGTATTGTTTGCCGTAAATATTTAGTATTTGATAGATATTGAATATTTTTTTGAATCCTAACAAGCATGTCTACCGTTATATTTTGTTTCTTCAACTTCGAACATTTTATTGCAAGTATTGAATAGGGTTAGCTAAAAAGTCCCTTAGTAACTGTGCAGGGTCTTCACCTTCTGTCTCAATTGAGATCAAGTTGAATACCAAGCCCATTTCAGCATGTTGCATGTTTACATGCGTTCTCTGACCTTTTTCTGGAACATTTTCGTTTCTTCTCGTTATTTCTGTTTTTCTCAAAAATTGATTATTCTTTTCTCTGTTTTGATTTTTTTTTTGGTCGCATGCATTAGGCAGGGACCAAGGCTCCAAGGCAACCATGGCATGATTTGCATTGCAGAATTGATGGACCTGCTGTATATGATGTGCTTATAAATTTTGCTCAACGATGGAGGAAAGCGACAAAGTGGAGGGAATTCAAGTTCTTTAAGAAAACAATGTCTCATTGGCATGATGATGCTATGCTAAAAATTGAGCGTATCTCATGGATACTCAGCCCTGCTTTTGCTGTTTTAAAGGATAGTACTGCAATCCCAGAGGATGATCCTAAACTACATGTATATGGGGAAGATCATTCAGAAAATTGGCATGTACAGGTAGATCCTTTTTTTGTTTTGTGGATATCTTTGAATAACTTACATCCTTTTTAACTTTCATCCTCATTCTTTTATTGCAGATCTTCCGTTCCATTGATTCTGGTTCAGTGCAGGGCTTTCCCAAGACGATTGACGTTGCGCAGGCACAGGCAAGGAAACCATAGCCTTTGTTCTATTTATGAACTTTTGCTAAAGTAGCTGTAATAAGTTAGGAACACTAGGAAGAAATCTTGTCTTCCCCTTGCACTTCACATTTTCTTTAGCGTTGTATCTTTTGCAGAACCTTGTCTGCTCAAAAAATCTGATGGTAGATAAAAGCATTGAAGCCGCATATATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGC</genome_strand>
        <mrna_strand>TCTTAGGAGGTCTGGATCTCTGCGATGGTCGATATGATACACCTGAGACATCGCTTATTCCATGACCTTGACACTGTATTTAAAGACGACGTTCATCAGCCTACATTTGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGACCAAGGCTCCAAGGCAACCATGGCATGATTTGCATTGCAGAATTGATGGACCTGCTGTATATGATGTGCTTATAAATTTTGCTCAACGATGGAGGAAAGCGACAAAGTGGAGGGAATTCAAGTTCTTTAAGAAAACAATGACTCATTGGCATGATGATGCTATGCTAAAAATTGAGCGTATCTCATGGATACTCAGCCCTGCTTTTGCTGTTTTAAAGGATAGTACTGCAATCCCAGAGGATGATCCTAAACTACATGTATATGGGGAAGATCATTCAGAAAATTGGCATGTACAG................................................................................ATCTTCCGTTCCATTGATTCTGGTTCAGTGCAGGGCTTTCCCAAGACGATTGACGTTGCGCAGGCACAG...................................................................................................................................AACCTTGTCTGCTCAAAAAATCTGATGGTGGATAAAAGCATTGAAGCCGCATATATTCAGGCAATAAGATCAGCTCAGCATTTTATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTCGGGAATCATACAAAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315277" ref_strand="+" ref_description="SGN-E315277 [cTOA-24-K20]">
      <seq>tcatggatactcagccctgcttttgctgttttaaaggatagtactgcaatcccagaggatgatcctaaactacatgtatatggggaagatcattcagaaaattggcatgtacagatcttccgttccattgattctggttcagtgcagggctttcccaagacgattgacgttgcgcaggcacaggcaaggaaaccatagcctttgttctatttatgaacttttgctaaagtagctgtaataagttaggaacactaggaagaaatcttgtcttccccttgcacttcacattttctttagcgttgtatcttttgcagaaccttgtctgctcaaaaaatctgatggtagataaaagcattgaagccgcatatattcaggcaataagatcagctcagcatttcatatatattgaaaatcagtattttcttggatcgtcatatgcttgggaatcatacaaagatgcaggagctgatcatctgataccgatggaattggcactgaaaatcactagtaaaattagagctagggaacgattttgtgtatatgttgtcgtgcccatgtggcctgaaggggaccccaagtcaatcactatgcaggaaatactcttctggcaggtaattttcgtgaaactctttgattatgtnctttggattttatgaagaagctaggcagttttnaatgagcaatgattangtgatactgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="67302" stop="69143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67602" g_stop="67715" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67716" i_stop="67795" i_length="80">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67796" g_stop="68143" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="462" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68144" i_stop="68602" i_length="459">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68603" g_stop="68843" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="703" r_length="241" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E315277" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67602" e_stop="67715"/>
          <exon e_start="67796" e_stop="68143"/>
          <exon e_start="68603" e_stop="68843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGATACTCAGCCCTGCTTTTGCTGTTTTAAAGGATAGTACTGCAATCCCAGAGGATGATCCTAAACTACATGTATATGGGGAAGATCATTCAGAAAATTGGCATGTACAGGTAGATCCTTTTTTTGTTTTGTGGATATCTTTGAATAACTTACATCCTTTTTAACTTTCATCCTCATTCTTTTATTGCAGATCTTCCGTTCCATTGATTCTGGTTCAGTGCAGGGCTTTCCCAAGACGATTGACGTTGCGCAGGCACAGGCAAGGAAACCATAGCCTTTGTTCTATTTATGAACTTTTGCTAAAGTAGCTGTAATAAGTTAGGAACACTAGGAAGAAATCTTGTCTTCCCCTTGCACTTCACATTTTCTTTAGCGTTGTATCTTTTGCAGAACCTTGTCTGCTCAAAAAATCTGATGGTAGATAAAAGCATTGAAGCCGCATATATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGCAGGTCAAATTTTGATATTCTTGTTATGTTTCTGAATTGCAATATACAAGATTACACTCTGTAGCATTGCATTGATGTTGGCTTGGCTTTATATTCTTGTCCATATGTTAAGTGGAAAACCTGAATTGTTGCAACTTAATGCATTGAAACACATAGGTAAAGCTCAATAGTGCGGTCAGAATATTGTTTAGCAATAGAATATCATCTAAATGACCATTTTGTCACTTGGAATGCATCCCCATTTTAGAAATTAAATAGGATGTTGCTTCACACTTGGTAAGATTCCAAATTATGCAGCTTCCTAGAAAAAAATGAAATGGTTTTGAGATAGTGCAACCTCCTAAACAAAACTTGTAGCTCCTACATAGTTTTCCTTATATTTCTTTTTGAGATGTACTCATTTTCAGCACTCTTGAAGTTGTTACATTGCTTCCTGATTTTGTTTGATGTTCACTTGATCAGGAGCTGATCATCTGATACCGATGGAATTGGCACTGAAAATCACTAGTAAAATTAGAGCTAGGGAACGATTTTGTGTATATGTTGTCGTGCCCATGTGGCCTGAAGGGGACCCCAAGTCAATCACTATGCAGGAAATACTCTTCTGGCAGGTAATTTTCGTGAAACTCTTTGATTATGTCTTTTGGATTTTATGAAGAAGCTAGGCAGTTTTAAATGAGCAATGATTAGGTGATACTGATAC</genome_strand>
        <mrna_strand>TCATGGATACTCAGCCCTGCTTTTGCTGTTTTAAAGGATAGTACTGCAATCCCAGAGGATGATCCTAAACTACATGTATATGGGGAAGATCATTCAGAAAATTGGCATGTACAG................................................................................ATCTTCCGTTCCATTGATTCTGGTTCAGTGCAGGGCTTTCCCAAGACGATTGACGTTGCGCAGGCACAGGCAAGGAAACCATAGCCTTTGTTCTATTTATGAACTTTTGCTAAAGTAGCTGTAATAAGTTAGGAACACTAGGAAGAAATCTTGTCTTCCCCTTGCACTTCACATTTTCTTTAGCGTTGTATCTTTTGCAGAACCTTGTCTGCTCAAAAAATCTGATGGTAGATAAAAGCATTGAAGCCGCATATATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGATCATCTGATACCGATGGAATTGGCACTGAAAATCACTAGTAAAATTAGAGCTAGGGAACGATTTTGTGTATATGTTGTCGTGCCCATGTGGCCTGAAGGGGACCCCAAGTCAATCACTATGCAGGAAATACTCTTCTGGCAGGTAATTTTCGTGAAACTCTTTGATTATGTNCTTTGGATTTTATGAAGAAGCTAGGCAGTTTTNAATGAGCAATGATTANGTGATACTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708776" ref_strand="+" ref_description="SGN-E708776 [FA36DA01]">
      <seq>catttattcaggcaataagatcagctcagcatttcatatatattgaaaatcagtattttcttggatcgtcatatgcttgggaatcatacaaagatgcaggagctgatcatctgataccgatggaattggcactgaaaatcactagtaaaattagagctagggaacgattttgtgtatatgttgtcgtgcccatgtggcctgaaggggaccccaagtcaatcactatgcaggaaatactcttctggcagagccagacaatacagatgatgtatcaagttattgcgacagagctcaaatcgatgcagattttggactcacatccacaagattatttaaatttctactgccttggtaaccgtgaggaaattccaggctctattgctcaatcttctggtaatggtgataaggtctcagactcatataagtttcagcgtttcatgatatatgttcatgccaaaggaatgatagtggatgatgagtatgttataatgggctctgccaacataaatcaacgatccttagctgggtcgaaagatacagagatagctatgggtgcctaccagcctcattatgcatggacagaaaagcaaaggcgtccacggggacagatctatggatacagaatgtccctatgggcagaacaccttgggaggatagaagaatgtttcaaggaaccagaggcgctaacatgcgtgaggaaggtgaatgaggttgctgaaggaaactggaagagttacacagctgaaaagttcactcaactacatggacatcttctcaagtatccaatacatgtaggcgcggacgggaaagtaggtccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="67745" stop="71595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68045" g_stop="68143" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68144" i_stop="68602" i_length="459">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68603" g_stop="68751" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="248" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68752" i_stop="69409" i_length="658">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69410" g_stop="69568" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="407" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69569" i_stop="70787" i_length="1219">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70788" g_stop="70988" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="608" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70989" i_stop="71083" i_length="95">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71084" g_stop="71295" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="820" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E708776" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68045" e_stop="68143"/>
          <exon e_start="68603" e_stop="68751"/>
          <exon e_start="69410" e_stop="69568"/>
          <exon e_start="70788" e_stop="70988"/>
          <exon e_start="71084" e_stop="71295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGCAGGTCAAATTTTGATATTCTTGTTATGTTTCTGAATTGCAATATACAAGATTACACTCTGTAGCATTGCATTGATGTTGGCTTGGCTTTATATTCTTGTCCATATGTTAAGTGGAAAACCTGAATTGTTGCAACTTAATGCATTGAAACACATAGGTAAAGCTCAATAGTGCGGTCAGAATATTGTTTAGCAATAGAATATCATCTAAATGACCATTTTGTCACTTGGAATGCATCCCCATTTTAGAAATTAAATAGGATGTTGCTTCACACTTGGTAAGATTCCAAATTATGCAGCTTCCTAGAAAAAAATGAAATGGTTTTGAGATAGTGCAACCTCCTAAACAAAACTTGTAGCTCCTACATAGTTTTCCTTATATTTCTTTTTGAGATGTACTCATTTTCAGCACTCTTGAAGTTGTTACATTGCTTCCTGATTTTGTTTGATGTTCACTTGATCAGGAGCTGATCATCTGATACCGATGGAATTGGCACTGAAAATCACTAGTAAAATTAGAGCTAGGGAACGATTTTGTGTATATGTTGTCGTGCCCATGTGGCCTGAAGGGGACCCCAAGTCAATCACTATGCAGGAAATACTCTTCTGGCAGGTAATTTTCGTGAAACTCTTTGATTATGTCTTTTGGATTTTATGAAGAAGCTAGGCAGTTTTAAATGAGCAATGATTAGGTGATACTGATACTGGCCATAACAATAAAAAAACTGATTAGGTGATACTGGCCTCAAATAGGCAGCTATATCTAGGCAAGGATACTTTCAGAATAGAAATGCCAGCTATCTTGAAGAGTTACTGAATCCAAATATCTGAATGTACTAGTCATAAGAGTGTGCATTAGCATAAACAGTGGCCACCTCTTTCTAATATCCATAATCATGCCTATCCAAAAGAGAGAGCTTTTATTTGCTTTAATATTTGAATGAGAAAATATTCTTATCCTTTAAAATGGTACATTTCCTTCCTTAGACATGGAGGGACAAGCCAGAAAAAGGACTTTGAAAAGGGATGTTTATGGGCATTATTGTATGTATGAGGACCTGACGGAATAAAAAATGAGTGGTGATTTTGATAAAAGACACTACTTTCCATGACATATTTTCCTTCATGCCTCTCATTGTCATTATATTACTATGCAATTTTGATGATTCAATATGTGATTAACTGAATATTGAAGGAAGAAGCCATCTGAAAAAAGGTATACAAGAAGAAATGAGAAGTGTTATTTTAAGATTTTTGTTTGCTTTCAACAGAGCCAGACAATACAGATGATGTATCAAGTTATTGCGACAGAGCTCAAATCGATGCAGATTTTGGACTCACATCCACAAGATTATTTAAATTTCTACTGCCTTGGTAACCGTGAGGAAATTCCAGGCTCTATTGCTCAATCTTCTGGTAATGGTGATAAGGTAATAGGGAATTTTCTGATTCTTAAAATATTCTTGTAGTGTATATACAGTGTTATACACAACATACACTTGGGAGCAGCTGAAACAAAAGCTGCCTTTTAATATTGATAAATATGGGTTCTAGAGTCTTGAAAAATGGCTGACCTTTTAACTTAAAACAATATCAATATTTCCTTAGCTCTGCTTGTTTTACGTCTCCTCAAACTCTATATTGGTCGCTCAATTGGTGAATGATTATTCAAAAGCTTGATTACACATGTTGTAGCATGCTTTACGATGGACCACTAGTTGGGGGTGGGTAAACCATTTATGATAGAGTGAGACCGACTTTAAAGGTGCAATTGAGATGAGTTCTTCAGGTGAACAGAATAGAGTTGTTTCACGAGCCACCCATAAACCTATAGTTGGATCCATGAGGAAATTCCAGTGAGGCTAACTGAAGGCTTACTCTAATTATGTCGAGAGGCTGACTGAATCCAATCATATACACCTTGAAATGAAACAAAGTTCAATTTTATCAAGTAGCTAAGTAGGCATACGAGTTAGTTTGACTTAAGAGTCTCGTCTCAATGTAGGAAGCAGACCCGCTACTCTCCCTCTGTGGCGGGTGAAAGTTCTCAAAGTGTCATATGCTATGGACTTTTGGTATTCGTGTGACCCAATAAATTTAAAGTGTTCTGTATCTGAACAGAATTATAATTGAACTTTCAAAAGGAAATCTAATTGTATTATCCAGATTCGGAATTTTGCTTGAAAAAACCGGGTATCTTAAACTTTGCTCTATATCCATGTGGCAGAGGATTTTGGGCTAGCAATATCTTTTAAGGTTTGAGGTTTAATACCTTTTTATGCAGAACCATATTTTTGCAGTACCAATATTTTTGGTCTTTCATGCTTCCGTTTAAGGTGTGAAGCAGAAGCAAAAACATGGGCCGATTGTTTGGTTACTTTGATTGCTATTTTACCTTTTCTCTTACATCATACTTACCTTCATAAGTAATGAGGAATAGGATAGAGAACAAAATAAGAATGTGGGTATTTCTAATGCATAGATTTAGGAACACCAGTGACCAAATCAACCCTCATAAAGTAAACACAATTTTATTTCGTTGTGAGTTGTCATCCTCTATGCTTTCTTGTTTTTTGTTTCATTTTGCTTATCTGAATTTGATCAAGCTTGAATACTTTTGTGAGAAGTTTTTTTTTGACGTGCAACCAGGTCTCAGACTCATATAAGTTTCAGCGTTTCATGATATATGTTCATGCCAAAGGAATGATAGTGGATGATGAGTATGTTATAATGGGCTCTGCCAACATAAATCAACGATCCTTAGCTGGGTCGAAAGATACAGAGATAGCTATGGGTGCCTACCAGCCTCATTATGCATGGACAGAAAAGCAAAGGCGTCCACGGGGACAGGTTTGATAGAAAATCACATAATGCACATACTTTATCTTGAGAAGACGTTAACGAAACCGGATGCATTTATTTATTCATCTTGTCTTGATCTCCAGATCTATGGATACAGAATGTCCCTATGGGCAGAACACCTTGGGAGGATAGAAGAATGTTTCAAGGAACCAGAGGCGCTAACATGCGTGAGGAAGGTGAATGAGGTTGCTGAAGGAAACTGGAAGAGTTACACAGCTGAAAAGTTCACTCAACTACATGGACATCTTCTCAAGTATCCAATACATGTAGGCGCGGACGGGAAAGTAGGTCCATT</genome_strand>
        <mrna_strand>CATTTATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGATCATCTGATACCGATGGAATTGGCACTGAAAATCACTAGTAAAATTAGAGCTAGGGAACGATTTTGTGTATATGTTGTCGTGCCCATGTGGCCTGAAGGGGACCCCAAGTCAATCACTATGCAGGAAATACTCTTCTGGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGACAATACAGATGATGTATCAAGTTATTGCGACAGAGCTCAAATCGATGCAGATTTTGGACTCACATCCACAAGATTATTTAAATTTCTACTGCCTTGGTAACCGTGAGGAAATTCCAGGCTCTATTGCTCAATCTTCTGGTAATGGTGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAGACTCATATAAGTTTCAGCGTTTCATGATATATGTTCATGCCAAAGGAATGATAGTGGATGATGAGTATGTTATAATGGGCTCTGCCAACATAAATCAACGATCCTTAGCTGGGTCGAAAGATACAGAGATAGCTATGGGTGCCTACCAGCCTCATTATGCATGGACAGAAAAGCAAAGGCGTCCACGGGGACAG...............................................................................................ATCTATGGATACAGAATGTCCCTATGGGCAGAACACCTTGGGAGGATAGAAGAATGTTTCAAGGAACCAGAGGCGCTAACATGCGTGAGGAAGGTGAATGAGGTTGCTGAAGGAAACTGGAAGAGTTACACAGCTGAAAAGTTCACTCAACTACATGGACATCTTCTCAAGTATCCAATACATGTAGGCGCGGACGGGAAAGTAGGTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612272" ref_strand="+" ref_description="SGN-E612272 [62033]">
      <seq>ctcattatgcatggacagaaaagcaaaggcatccacagggtacagatctacggatacagaatgtccctgtgggcagagcaccttgggaggatagaagaatgttcaaggaaccagaggcgctaacatgcgtgaggagggtgaatgaggtttctgaaggtaactggaagagttacacagctgaaaatttcactcaactacaaggacatcttctcaattttttaacacttgtatgcgcggacgggaaagtaggtccattacctgaatatgaaaatttccctgatgtagggggtagaatactgggaaatcatgccccaactatcccagatgttttgaccacatagtcctcaataattaacacaattgtgagtgtttggacactgtaaaaatatgtagctgcaagatcctccttatttgtcattttgtacatttgttctatgttgtacaatacagggtgaaaaaacaggtagaaatgatttgattgtgggcttgtatttctgctggatattggggacgataaagttgagatgttaattgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="70645" stop="71889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70945" g_stop="70988" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70989" i_stop="71083" i_length="95">
            <donor d_prob="0.831" d_score="0.91"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71084" g_stop="71551" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="510" r_length="465" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E612272" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70945" e_stop="70988"/>
          <exon e_start="71084" e_stop="71551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTATGCATGGACAGAAAAGCAAAGGCGTCCACGGGG-ACAGGTTTGATAGAAAATCACATAATGCACATACTTTATCTTGAGAAGACGTTAACGAAACCGGATGCATTTATTTATTCATCTTGTCTTGATCTCCAGATCTATGGATACAGAATGTCCCTATGGGCAGAACACCTTGGGAGGATAGAAGAATGTTTCAAGGAACCAGAGGCGCTAACATGCGTGAGGAAGGTGAATGAGGTTGCTGAAGGAAACTGGAAGAGTTACACAGCTGAAAAGTTCACTCAACTACATGGACATCTTCTCAAGTATCCAATACATGTAGGCGCGGACGGGAAAGTAGGTCCATTAGCTGAATATGAAAATTTCCCAGATGTAGGAGGTAGAATTCTGGGAAATCATGCCCCTACTATCCCAGATGTTTTGACTACATAGTCAGTCCTCAATAATTAACACGATTGTGAGTGTTTGGACACTCTGAAAATATGTAGCTGCAAGA---TCCTTATTAGTCAATTTTGTACATTTGTTCTATGTTGTACAATAGAGGGTGAAAAAAAGGATAGAAATGATATGATTGTGGGCTTGTATTTGTGCTGAATATTGTGG</genome_strand>
        <mrna_strand>CTCATTATGCATGGACAGAAAAGCAAAGGCATCCACAGGGTACAG...............................................................................................ATCTACGGATACAGAATGTCCCTGTGGGCAGAGCACCTTGGGAGGATAGAAGAATG-TTCAAGGAACCAGAGGCGCTAACATGCGTGAGGAGGGTGAATGAGGTTTCTGAAGGTAACTGGAAGAGTTACACAGCTGAAAATTTCACTCAACTACAAGGACATCTTCTCAATTTTTTAACACTTGTATGCGCGGACGGGAAAGTAGGTCCATTACCTGAATATGAAAATTTCCCTGATGTAGGGGGTAGAATACTGGGAAATCATGCCCCAACTATCCCAGATGTTTTGAC--CACA-T-AGTCCTCAATAATTAACACAATTGTGAGTGTTTGGACACTGTAAAAATATGTAGCTGCAAGATCCTCCTTATTTGTC-ATTTTGTACATTTGTTCTATGTTGTACAATACAGGGTGAAAAAACAGGTAGAAATGATTTGATTGTGGGCTTGTATTTCTGCTGGATATTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208059" ref_strand="+" ref_description="SGN-E208059 [cLEC-34-O16]">
      <seq>ttaaagcttcaactcttgcatcattctagtcgagtcaatttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccataagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="77870" stop="80392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78170" g_stop="78260" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78261" i_stop="78399" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78400" g_stop="78419" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="111" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78420" i_stop="79359" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79470" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="222" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79471" i_stop="79558" i_length="88">
            <donor d_prob="0.962" d_score="0.98"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79559" g_stop="79658" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="322" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79659" i_stop="79974" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79975" g_stop="80092" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="440" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E208059" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78170" e_stop="78260"/>
          <exon e_start="78400" e_stop="78419"/>
          <exon e_start="79360" e_stop="79470"/>
          <exon e_start="79559" e_stop="79658"/>
          <exon e_start="79975" e_stop="80092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCTTCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCG</genome_strand>
        <mrna_strand>TTAAAGCTTCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCATAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265803" ref_strand="+" ref_description="SGN-E265803 [cLEI-11-E15]">
      <seq>tcaactcttgcatcattctagtcgagtcaatttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagaagacattacgtcagctttgttggcagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaactatacaacctcagcaaatacttcaaactctcaactaatcaagggtcattatcaacaatagaatcaggcttttatgtctcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="77878" stop="80746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78178" g_stop="78260" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78261" i_stop="78399" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78400" g_stop="78419" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="103" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78420" i_stop="79359" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79470" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="214" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79471" i_stop="79558" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79559" g_stop="79658" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="314" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79659" i_stop="79974" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79975" g_stop="80124" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="464" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80125" i_stop="80214" i_length="90">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80215" g_stop="80441" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="691" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E265803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78178" e_stop="78260"/>
          <exon e_start="78400" e_stop="78419"/>
          <exon e_start="79360" e_stop="79470"/>
          <exon e_start="79559" e_stop="79658"/>
          <exon e_start="79975" e_stop="80124"/>
          <exon e_start="80215" e_stop="80441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG</genome_strand>
        <mrna_strand>TCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG..........................................................................................AAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322597" ref_strand="+" ref_description="SGN-E322597 [cTOB-26-C23]">
      <seq>caatttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggcaagctttgctctctctaatctcccattatatctttcttctatttaacatatatgtgtttttttgcatattttcagaattttttaacctaattaattgtcgaaacaacaaattttatcatctttatgatttcttgcaggctgattctccacgcaaaaggtaccactctgtttctttatagaactttgaggattttctgtttatttgttgcatcgacttgatccgtctaactttccgtaattggttttatctttattagggtttttttgtctgtatttcgctgatctatattttctttatttggttgttggccttgtgaatggtgaatacattgttttattcatcaggctagttgggatatctatgtggtgtaaaaaaattgaatggggtttgttggattttggggagttcactttgatttgtgttttggagagatgttaatgtgttaatcttttttaatagagaaatggtaaggtatgaatctgtttttggaagaattgtttttaagtttatcatgtagaattagttttccgtttgttttattggggaatgtcactgaagcataaaacatttctgagaatctcatattttgtatatatgggtaattctgtatataataaagtcattaatcctatgccttacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="77905" stop="79207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78205" g_stop="78907" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E322597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78205" e_stop="78907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATG</genome_strand>
        <mrna_strand>CAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344591" ref_strand="+" ref_description="SGN-E344591 [cTOF-14-O7]">
      <seq>tttagggatcgcttcgtattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaaggtcagctatttatacattgattggtgaaccattgttctgttggcttgcttttcttttttcttgacttggaggttttctgattatattcagaagacattacgtcagctttgttggcagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="77908" stop="80666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78208" g_stop="78260" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78261" i_stop="78399" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78400" g_stop="78419" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="73" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78420" i_stop="79359" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79470" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="184" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79471" i_stop="79558" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79559" g_stop="79658" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="284" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79659" i_stop="79974" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79975" g_stop="80366" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="676" r_length="392" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E344591" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78208" e_stop="78260"/>
          <exon e_start="78400" e_stop="78419"/>
          <exon e_start="79360" e_stop="79470"/>
          <exon e_start="79559" e_stop="79658"/>
          <exon e_start="79975" e_stop="80366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAAC</genome_strand>
        <mrna_strand>TTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395675" ref_strand="+" ref_description="SGN-E395675 [TUS-17-I8]">
      <seq>tattggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtaccactctgtttctttatagaactttgaggattttctgtttatttgttgcatcgacttgatccgtctaactttccgtaattggttttatctttattagggtttttttgtctgtatttcgctgatctatattttctttatttggttgttggccttgtgaatggtgaatacattgttttattcatcaggctagttgggatatctatgtggtgtaaaaaaattgaatggggtttgttggattttggggagttcactttgatttgtgttttggagagatgttaatgtgttaatcttttttaatagagaaatggtaaggtatgaatctgtttttggaagaattgtttttaagtttatcatgtagaattagttttccgtttgttttattggggaatgtcactgaagcataaaacatttctgagaatctcatattttgtatatatgggtaattctgtatataataaagtcattaatcctatgccttacttatgcaagggataaggttcaattttttctctctctttgatttgaagtaatgttttccagggaacatcctattgaagtctccccctgtatggtcgtcaaaaatcctcctacttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="77924" stop="79319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78224" g_stop="78260" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78261" i_stop="78399" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78400" g_stop="79019" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="657" r_length="620" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E395675" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78224" e_stop="78260"/>
          <exon e_start="78400" e_stop="79019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTG</genome_strand>
        <mrna_strand>TATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTATTGAAGTCTCCCCCTGTATGGTCGTCAAAAATCCTCCTACTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213264" ref_strand="+" ref_description="SGN-E213264 [cLEC-71-A21]">
      <seq>attggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtaccactctgtttctttatagaactttgaggattttctgtttatttgttgcatcgacttgatccgtctaactttccgtaattggttttatctttattagggtttttttgtctgtatttcgctgatctatattttctttatttggttgttggccttgtgaatggtgaatacattgttttattcatcaggctagttgggatatctatgtggtgtaaaaaaattgaatggggtttgttggattttggggagttcactttgatttgtgttttggagagatgttaatgtgttaatcttttttaatagagaaatggtaaggtatgaatctgtttttggaagaattgtttttaagtttatcatgtagaattagttttccgtttgttttattggggaatgtcactgaagcataaaacatttctgagaatctcatattttgtatatatgggtaattctgtatataataaagtcattaatcctatgccttacttatgcaagggataaggttcaattttttctctctctttgatttgaagtaatgttttccagggaacatcctaatgaagtctcccactgtatggtcgtcaaagatcctcctacttattgataaaattggtcatatgctaagtctttcttgagttagaaagtaccaatcaacctttatggataagtttttggcattttttacaagtaaaattgttgagcatgttaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="77925" stop="79428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78225" g_stop="78260" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78261" i_stop="78399" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78400" g_stop="79128" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="765" r_length="729" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E213264" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78225" e_stop="78260"/>
          <exon e_start="78400" e_stop="79128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGG</genome_strand>
        <mrna_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379101" ref_strand="+" ref_description="SGN-E379101 [TUS-3-C18]">
      <seq>attggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtaccactctgtttctttatagaactttgaggattttctgtttatttgttgcatcgacttgatccgtctaactttccgtaattggttttatctttattagggtttttttgtctgtatttcgctgatctatattttctttatttggttgttggccttgtgaatggtgaatacattgttttattcatcaggctagttgggatatctatgtggtgtaaaaaaattgaatggggtttgttggattttggggagttcactttgatttgtgttttggagagatgttaatgtgttaatcttttttaatagagaaatggtaaggtatgaatctgtttttggaagaattgtttttaagtttatcatgtagaattagttttccgtttgttttattggggaatgtcactgaagcataaaacatttctgagaatctcatattttgtatatatgggtaattctgtatataataaagtcattaatcctatgccttacttatgcaagggataaggttcaattttttctctctctttgatttgaagtaatgttttccagggaacatcctaatgaagtctcccactgtatggtcgtcaaagatcctcctacttattgataaaattggtcatatgctaagtctttcttgagttagaaagtaccaatcaacctttatggataagtttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="77925" stop="79391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78225" g_stop="78260" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78261" i_stop="78399" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78400" g_stop="79091" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="728" r_length="692" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E379101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78225" e_stop="78260"/>
          <exon e_start="78400" e_stop="79091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGG</genome_strand>
        <mrna_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210349" ref_strand="+" ref_description="SGN-E210349 [cLEC-35-J15]">
      <seq>attggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtaccactctgtttctttatagaactttgaggattttctgtttatttgttgcatcgacttgatccgtctaactttccgtaattggttttatctttattagggtttttttgtctgtatttcgctgatctatattttctttatttggttgttggccttgtgaatggtgaatacattgttttattcatcaggctagttgggatatctatgtggtgtaaaaaaattgaatggggtttgttggattttggggagttcactttgatttgtgttttggagagatgttaatgtgttaatcttttttaatagagaaatggtaaggtatgaatctgtttttggaagaattgtttttaagtttatcatgtagaattagttttccgtttgttttattggggaatgtcactgaagcataaaacatttctgagaatctcatattttgtatatatgggtaattctgtatataataaagtcattaatcctatgccttacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="77925" stop="79207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78225" g_stop="78260" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78261" i_stop="78399" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78400" g_stop="78907" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="544" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E210349" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78225" e_stop="78260"/>
          <exon e_start="78400" e_stop="78907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATG</genome_strand>
        <mrna_strand>ATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689342" ref_strand="+" ref_description="SGN-E689342 [t3_tus_84_E04]">
      <seq>ggcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagaagacattacgtcagctttgttggcagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaactatacaacctcagcaaatacttcaaactctcaactaatcaagggtcattatcaacaatagaatcaggcttttatgtctcgtagaaaacggccaaggactccaacacctggtcattatcttgggcttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="77928" stop="80746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78228" g_stop="78260" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78261" i_stop="78399" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78400" g_stop="78419" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="53" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78420" i_stop="79359" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79470" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="164" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79471" i_stop="79558" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79559" g_stop="79658" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="264" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79659" i_stop="79974" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79975" g_stop="80124" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="414" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80125" i_stop="80214" i_length="90">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80215" g_stop="80441" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="641" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E689342" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78228" e_stop="78260"/>
          <exon e_start="78400" e_stop="78419"/>
          <exon e_start="79360" e_stop="79470"/>
          <exon e_start="79559" e_stop="79658"/>
          <exon e_start="79975" e_stop="80124"/>
          <exon e_start="80215" e_stop="80441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG</genome_strand>
        <mrna_strand>GGCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG..........................................................................................AAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332915" ref_strand="+" ref_description="SGN-E332915 [cTOD-19-I22]">
      <seq>gcaatttagggttcgctccatcatccgaaatggctgattctccacgcaaaaggtattcccgctctccttcaccttgggaagaaaagtcaagatctcgctctcgatccccaactagatcacagtcaaggccaagaggaagatcaaggtccagaagtcatggaagggctgaagatactaatcctggaaacacactctatgtgactggattatcttcaagggtcactcaaagggatcttgaagagcatttctcaaaggagggaaaggtgaagtcagcttttctggttgtggagccccgttctcgcatctctcgtggttttgctttcataacaatggatagtcttgaggatgccaatcgctgcattaagcaccttaatcagtccgtccttgaaggccggtccataacggtggagaagaagacattacgtcagctttgttggcagcaatcaaagatgatcagttcttccattgcaacattatattcactcagcttgaccaaatggcccgctaaaacagcttttcacatgcatctgatcgactaaacttagcaactattttgccaaacaactatacaacctcagcaaatacttcaaactctcaactaatcaagggtcattatcaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0127J16-kkENN/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLe0127J16.1" temp_strand="+" temp_description="C02SLe0127J16.1  AC215466.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0127J16 sequenced_by:kribb upload_account_name:korea">
        <position start="77929" stop="80724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78229" g_stop="78260" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78261" i_stop="78399" i_length="139">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78400" g_stop="78419" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="52" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78420" i_stop="79359" i_length="940">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79360" g_stop="79470" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="163" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79471" i_stop="79558" i_length="88">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.531" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79559" g_stop="79658" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="263" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79659" i_stop="79974" i_length="316">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79975" g_stop="80124" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="413" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="80125" i_stop="80214" i_length="90">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="80215" g_stop="80424" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="623" r_length="210" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0127J16.1" gen_strand="+" ref_id="SGN-E332915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0127J16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78229" e_stop="78260"/>
          <exon e_start="78400" e_stop="78419"/>
          <exon e_start="79360" e_stop="79470"/>
          <exon e_start="79559" e_stop="79658"/>
          <exon e_start="79975" e_stop="80124"/>
          <exon e_start="80215" e_stop="80424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGGAGAACACACTAACATAGCCTTAGCGATGCATTTCTGTTTTCTTTTTGCACGCAAATAGATCTCCAACGGATTTTCTTTTAAGCCACTGTCTTTAGTAGTATTAGTTGACATAGAAATTTTATGAGCTACATATACTTGAAAAAGATACCATCATTACTCGAGGAACCATCTTTAAAGACATGTGGTTGGTGTTAATAAACTGGTTCAATGTTGTACTTATTGGACTCCCAGGTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAGGTATGAGTGGAACTTTAGTTTTACTTCACCTTCTTTATGTTAACAGCTTCGTTTCGGTTTCTCAAAATTTCCTCCATGACTTGATTAGGGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAGGTTGGTTTCTGGTTTACGTATAAGCAAGTTGTTTTCTGGTTCTGTTTCTGCCATGATTTGGTGCTCATACTGCATACCAACATTCTCTCTCGTTCAAAATAATTTGTGTTGTATCTACTCTTTATAATGGAAATTTTTCATTTATGATGATTATCTTAGAAACATCTAGTTTTCATTTAAGTTTATTGTATGAGCAAAGTCTTGTCAATGCATTTGCCAAGATATTGATGTATTGTGGAATTTTGGCTGGATTCTTTTCTCATTGTTCATACTTTAAAGCTTGCTATTGAAGTTTCTTATACTTTCTTTTGATTAGGTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAAT</genome_strand>
        <mrna_strand>GCAATTTAGGGTTCGCTCCATCATCCGAAATG...........................................................................................................................................GCTGATTCTCCACGCAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG........................................................................................GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG............................................................................................................................................................................................................................................................................................................................GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG..........................................................................................AAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>123</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1184" PGL_stop="499"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1184" e_stop="774"/>
            <exon e_start="637" e_stop="499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.878"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.878">
            <gDNA_exon_boundary e_start="1184" e_stop="774" e_length="411"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="773" i_stop="638" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="637" e_stop="499" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1184" stop="774"/>
              <exon start="637" stop="499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTCTCTCTCTTTTTTCCTTTTCTTGATTCTCCCTCTGTAAACCTAACCCAATAATTTCAGTGGCCATTACAGTTCAAGATCTGAGTTTTTCTTAGAAACGAAAAAATGTCTTCTTTTGTGATGTTCTTGCTAACAATAACATTGCTCTCAATTTTCCCATTTCGACAATGTCATGGCCGTCTTTTCACTTTTGAAATGCACCACCGTTTCTCTGAAACTGTCAAGAAGTGGTCACTGCAGAAACTTGCTGCTCCACTTCAAAATTGGCCGGTAAAGGGAAGTCTTCAGTATTATACTCAGCTGGCCAACCACGACAGGTTGCTACATGGCAGGAGGCTTTTTAAATTCGATGGACCACTTACTTTCTCTGATGGCAATTCCACTTTCCGGATCAGCTCTCTTGGATT : CTTGCATTACACCACGGTGACTTTGGGGACACCTGGGTTGAAGTTTCTTGTGGCTCTTGATACTGGGAGTGACTTATTTTGGGTGCCTTGTGAATGCGGCAGATGTGCTTCTACTGATGATCCTACACTTTACAGCTCT</gDNA_template>
            <first_frame> L  F  L  S  L  F  S  F  S  *  F  S  L  C  K  P  N  P  I  I  S  V  A  I  T  V  Q  D  L  S  F  S  *  K  R  K  N  V  F  F  C  D  V  L  A  N  N  N  I  A  L  N  F  P  I  S  T  M  S  W  P  S  F  H  F  *  N  A  P  P  F  L  *  N  C  Q  E  V  V  T  A  E  T  C  C  S  T  S  K  L  A  G  K  G  K  S  S  V  L  Y  S  A  G  Q  P  R  Q  V  A  T  W  Q  E  A  F  *  I  R  W  T  T  Y  F  L  *  W  Q  F  H  F  P  D  Q  L  S  W  I  :  L  A  L  H  H  G  D  F  G  D  T  W  V  E  V  S  C  G  S  *  Y  W  E  *  L  I  L  G  A  L  *  M  R  Q  M  C  F  Y  *  *  S  Y  T  L  Q  L  </first_frame>
            <second_frame>  F  F  S  L  F  F  P  F  L  D  S  P  S  V  N  L  T  Q  *  F  Q  W  P  L  Q  F  K  I  *  V  F  L  R  N  E  K  M  S  S  F  V  M  F  L  L  T  I  T  L  L  S  I  F  P  F  R  Q  C  H  G  R  L  F  T  F  E  M  H  H  R  F  S  E  T  V  K  K  W  S  L  Q  K  L  A  A  P  L  Q  N  W  P  V  K  G  S  L  Q  Y  Y  T  Q  L  A  N  H  D  R  L  L  H  G  R  R  L  F  K  F  D  G  P  L  T  F  S  D  G  N  S  T  F  R  I  S  S  L  G  F :   L  H  Y  T  T  V  T  L  G  T  P  G  L  K  F  L  V  A  L  D  T  G  S  D  L  F  W  V  P  C  E  C  G  R  C  A  S  T  D  D  P  T  L  Y  S  S </second_frame>
            <third_frame>   F  S  L  S  F  F  L  F  L  I  L  P  L  *  T  *  P  N  N  F  S  G  H  Y  S  S  R  S  E  F  F  L  E  T  K  K  C  L  L  L  *  C  S  C  *  Q  *  H  C  S  Q  F  S  H  F  D  N  V  M  A  V  F  S  L  L  K  C  T  T  V  S  L  K  L  S  R  S  G  H  C  R  N  L  L  L  H  F  K  I  G  R  *  R  E  V  F  S  I  I  L  S  W  P  T  T  T  G  C  Y  M  A  G  G  F  L  N  S  M  D  H  L  L  S  L  M  A  I  P  L  S  G  S  A  L  L  D   : S  C  I  T  P  R  *  L  W  G  H  L  G  *  S  F  L  W  L  L  I  L  G  V  T  Y  F  G  C  L  V  N  A  A  D  V  L  L  L  M  I  L  H  F  T  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1096" stop="774"/>
                    <exon start="637" stop="499"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLRNEKMSSFVMFLLTITLLSIFPFRQCHGRLFTFEMHHRFSETVKKWSLQKLAAPLQNWPVKGSLQYYTQLANHDRLLHGRRLFKFDGPLTFSDGNSTFRISSLGFLHYTTVTLGTPGLKFLVALDTGSDLFWVPCECGRCASTDDPTLYSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5373" PGL_stop="4457"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5373" e_stop="4457"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="5373" e_stop="4457" e_length="917"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5373" stop="4457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACCCATTGGAAAATCAAGACATTGATAGTTTGGAGAGGCCTCTGATTCATGAAAGGAGTTCAACTGTGATTGCTGACAACAATGGATTTTTACACGATGCCTCTCCAAATGAAATTGATTTCCCTGGACAAGATTTGTCTGAATACCCTCCAGTCAGCCGAACCTCACCAGTTCCAAAGCCGAAGTTTGATTTTGCACAGTATTATGCTTTCAATCTGACAATATTTGCCCTAACCCTGATCTATTGTTCGTTTGCTCCTCTGGTGGTTCCTGTTGGTGCAGTTTACTTTGGGTACCGGTATTTAGTTGACAAGTACAACTTCCTGTTTGTATACAGAGTGCGAGGTTTCCCTGCTGGTAATGATGGGAGGTTGATGGATACTGTATTATCTATCATGAGGTTTTGTGTTGACTTGTTCCTCCTTTCAATGCTACTTTTCTTTTCTGTACGAGGAGACTCAACTAAGCTTCAAGCCATATTCACACTTGGATTGTTAGTGGTGTATAAACTCTTGCCCTCTGATAAGGATTCTTTTCAGCCAGCGTTATTACAAGGCATACAGACTATTGACAACATTGTCGAAGGGCCAACTGATTATGAGGTTTTCTCACAACCTACATTTGATTGGGATACGTATAATTCATGACTTGTGAATAAAACCAAAGATTTGTGTTGACATTTTGTATATATTCTTATTTTGTTACGGAAGTGTTCCTGCATCTATCAGATCTCTCTCCTCTTTTCTTGGTTCATCCTTTTGGTGGTTGGAAACAGATATTTGGCTTAGGACCACAAGAGCACATGTTATAATGTCTAACGGGTTCCACTGTAGTAGCACAGTCTGTATTTCTACGATCAGGTCTTGACCAATCTACAGAGTGAATAGATGTTGTTTGTTTACCTCAACATCTGCTC</gDNA_template>
            <first_frame> Y  P  L  E  N  Q  D  I  D  S  L  E  R  P  L  I  H  E  R  S  S  T  V  I  A  D  N  N  G  F  L  H  D  A  S  P  N  E  I  D  F  P  G  Q  D  L  S  E  Y  P  P  V  S  R  T  S  P  V  P  K  P  K  F  D  F  A  Q  Y  Y  A  F  N  L  T  I  F  A  L  T  L  I  Y  C  S  F  A  P  L  V  V  P  V  G  A  V  Y  F  G  Y  R  Y  L  V  D  K  Y  N  F  L  F  V  Y  R  V  R  G  F  P  A  G  N  D  G  R  L  M  D  T  V  L  S  I  M  R  F  C  V  D  L  F  L  L  S  M  L  L  F  F  S  V  R  G  D  S  T  K  L  Q  A  I  F  T  L  G  L  L  V  V  Y  K  L  L  P  S  D  K  D  S  F  Q  P  A  L  L  Q  G  I  Q  T  I  D  N  I  V  E  G  P  T  D  Y  E  V  F  S  Q  P  T  F  D  W  D  T  Y  N  S  *  L  V  N  K  T  K  D  L  C  *  H  F  V  Y  I  L  I  L  L  R  K  C  S  C  I  Y  Q  I  S  L  L  F  S  W  F  I  L  L  V  V  G  N  R  Y  L  A  *  D  H  K  S  T  C  Y  N  V  *  R  V  P  L  *  *  H  S  L  Y  F  Y  D  Q  V  L  T  N  L  Q  S  E  *  M  L  F  V  Y  L  N  I  C   </first_frame>
            <second_frame>  T  H  W  K  I  K  T  L  I  V  W  R  G  L  *  F  M  K  G  V  Q  L  *  L  L  T  T  M  D  F  Y  T  M  P  L  Q  M  K  L  I  S  L  D  K  I  C  L  N  T  L  Q  S  A  E  P  H  Q  F  Q  S  R  S  L  I  L  H  S  I  M  L  S  I  *  Q  Y  L  P  *  P  *  S  I  V  R  L  L  L  W  W  F  L  L  V  Q  F  T  L  G  T  G  I  *  L  T  S  T  T  S  C  L  Y  T  E  C  E  V  S  L  L  V  M  M  G  G  *  W  I  L  Y  Y  L  S  *  G  F  V  L  T  C  S  S  F  Q  C  Y  F  S  F  L  Y  E  E  T  Q  L  S  F  K  P  Y  S  H  L  D  C  *  W  C  I  N  S  C  P  L  I  R  I  L  F  S  Q  R  Y  Y  K  A  Y  R  L  L  T  T  L  S  K  G  Q  L  I  M  R  F  S  H  N  L  H  L  I  G  I  R  I  I  H  D  L  *  I  K  P  K  I  C  V  D  I  L  Y  I  F  L  F  C  Y  G  S  V  P  A  S  I  R  S  L  S  S  F  L  G  S  S  F  W  W  L  E  T  D  I  W  L  R  T  T  R  A  H  V  I  M  S  N  G  F  H  C  S  S  T  V  C  I  S  T  I  R  S  *  P  I  Y  R  V  N  R  C  C  L  F  T  S  T  S  A  </second_frame>
            <third_frame>   P  I  G  K  S  R  H  *  *  F  G  E  A  S  D  S  *  K  E  F  N  C  D  C  *  Q  Q  W  I  F  T  R  C  L  S  K  *  N  *  F  P  W  T  R  F  V  *  I  P  S  S  Q  P  N  L  T  S  S  K  A  E  V  *  F  C  T  V  L  C  F  Q  S  D  N  I  C  P  N  P  D  L  L  F  V  C  S  S  G  G  S  C  W  C  S  L  L  W  V  P  V  F  S  *  Q  V  Q  L  P  V  C  I  Q  S  A  R  F  P  C  W  *  *  W  E  V  D  G  Y  C  I  I  Y  H  E  V  L  C  *  L  V  P  P  F  N  A  T  F  L  F  C  T  R  R  L  N  *  A  S  S  H  I  H  T  W  I  V  S  G  V  *  T  L  A  L  *  *  G  F  F  S  A  S  V  I  T  R  H  T  D  Y  *  Q  H  C  R  R  A  N  *  L  *  G  F  L  T  T  Y  I  *  L  G  Y  V  *  F  M  T  C  E  *  N  Q  R  F  V  L  T  F  C  I  Y  S  Y  F  V  T  E  V  F  L  H  L  S  D  L  S  P  L  F  L  V  H  P  F  G  G  W  K  Q  I  F  G  L  G  P  Q  E  H  M  L  *  C  L  T  G  S  T  V  V  A  Q  S  V  F  L  R  S  G  L  D  Q  S  T  E  *  I  D  V  V  C  L  P  Q  H  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5373" stop="4726"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPLENQDIDSLERPLIHERSSTVIADNNGFLHDASPNEIDFPGQDLSEYPPVSRTSPVPKPKFDFAQYYAFNLTIFALTLIYCSFAPLVVPVGAVYFGYRYLVDKYNFLFVYRVRGFPAGNDGRLMDTVLSIMRFCVDLFLLSMLLFFSVRGDSTKLQAIFTLGLLVVYKLLPSDKDSFQPALLQGIQTIDNIVEGPTDYEVFSQPTFDWDTYNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4718" stop="4506"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKPKICVDILYIFLFCYGSVPASIRSLSSFLGSSFWWLETDIWLRTTRAHVIMSNGFHCSSTVCISTIRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14953" PGL_stop="18614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14953" e_stop="15278"/>
            <exon e_start="15660" e_stop="16074"/>
            <exon e_start="16245" e_stop="16612"/>
            <exon e_start="17061" e_stop="17297"/>
            <exon e_start="18037" e_stop="18614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.598" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14953" e_stop="15278" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.598" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15279" i_stop="15659" i_length="381"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15660" e_stop="16074" e_length="415"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16075" i_stop="16244" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16245" e_stop="16612" e_length="368"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.940">
            <gDNA_intron_boundary i_start="16613" i_stop="17060" i_length="448"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17061" e_stop="17297" e_length="237"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="18037" e_stop="18614" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14953" stop="15278"/>
              <exon start="15660" stop="16027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14953" stop="15278"/>
              <exon start="15660" stop="15910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14953" stop="15278"/>
              <exon start="15660" stop="15715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14967" stop="15278"/>
              <exon start="15660" stop="15909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14985" stop="15278"/>
              <exon start="15660" stop="16004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15042" stop="15278"/>
              <exon start="15660" stop="16074"/>
              <exon start="16245" stop="16303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15665" stop="16074"/>
              <exon start="16245" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15774" stop="16074"/>
              <exon start="16245" stop="16456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16253" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16253" stop="16612"/>
              <exon start="17061" stop="17233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16439" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16439" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16439" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16520" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577872" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16525" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17114" stop="17297"/>
              <exon start="18037" stop="18526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17174" stop="17297"/>
              <exon start="18037" stop="18614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17180" stop="17297"/>
              <exon start="18037" stop="18478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17183" stop="17297"/>
              <exon start="18037" stop="18529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17203" stop="17297"/>
              <exon start="18037" stop="18521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17219" stop="17297"/>
              <exon start="18037" stop="18512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452577" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17256" stop="17297"/>
              <exon start="18037" stop="18448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413089" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17261" stop="17297"/>
              <exon start="18037" stop="18529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17262" stop="17297"/>
              <exon start="18037" stop="18526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18071" stop="18512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413828" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGGAAAAAAAAAATTAAAAAAGCTGCCTTTTTTTCTTCTTTTATCTTCTTCTTCATCTTCCTTTCCATTCTCATCTCCCACATTCAACTGAAAAACAGATATATAGAGAGAAAAAGGAAAACAAAAAACTGAAAAAGAAACCAACAAAACAGGAAAAAGACTTAATCTTTTCTCTGTATTTCATATTCTTTAACCGTATATTCTCATAAACTCTGGTTGATCTTTAATGGATCTGTAGATCTAACGTTTATTGGCTACGTTTAATTGTATTTTCACACTGTGTGATTCAGTAATATTATACCATATAAGGCCTAATCACAACT : AACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA : GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG : ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA : GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCTCTGCTTATATTCTATCAATTTTACTTGCTCACTTTTCTGTGGTAAATGTAAATGAATGCCTCTCATTTTGAACCCATAACGACAG</gDNA_template>
            <first_frame> K  R  K  K  K  I  K  K  A  A  F  F  S  S  F  I  F  F  F  I  F  L  S  I  L  I  S  H  I  Q  L  K  N  R  Y  I  E  R  K  R  K  T  K  N  *  K  R  N  Q  Q  N  R  K  K  T  *  S  F  L  C  I  S  Y  S  L  T  V  Y  S  H  K  L  W  L  I  F  N  G  S  V  D  L  T  F  I  G  Y  V  *  L  Y  F  H  T  V  *  F  S  N  I  I  P  Y  K  A  *  S  Q  L :   T  K  G  V  V  V  E  V  F  S  F  G  E  Q  L  H  P  F  G  C  *  G  I  G  G  K  Q  R  *  N  E  G  C  Y  Q  G  *  *  I  S  *  R  H  V  A  G  H  R  R  I  V  M  Y  I  V  L  Q  I  Q  L  D  G  K  M  D  F  F  G  I  R  T  V  D  N  T  Y  L  V  S  S  L  W  Q  L  F  R  P  T  I  C  W  R  I  R  A  R  L  S  Q  V  L  *  A  C  L  I  L  A  H  M  E  R  L  L  G  Y  M  M  V  M  V  G  L  K  H  H  G  I  S  M  I  T  S  F  R  I  S  R  :  G  L  Q  L  N  K  I  P  C  L  L  M  *  Y  E  K  R  F  K  Q  Q  R  R  D  S  F  L  *  L  L  S  S  G  *  R  N  L  R  W  L  L  L  E  H  A  V  W  L  G  *  S  V  M  G  P  F  M  L  P  T  L  V  I  P  G  L  F  W  G  D  L  S  G  L  Q  E  R  F  *  P  F  S  F  Q  L  S  I  M  Q  V  L  S  L  S  D  R  N  C  I  L  C  I  R  M  T  H  R  *  S  F  *  S  I  M  Y  G  V  *  R  V  *  Y  R :   F  R  D  L  L  A  I  Y  I  S  K  M  L  S  T  I  K  S  H  C  M  Q  N  F  V  C  E  N  L  L  R  G  P  Y  *  V  R  I  Q  R  F  Q  C  M  N  S  S  H  M  I  N  F  S  S  L  L  P  T  V  F  G  N  I  L  A  I  K  R  Q  L  I  L  S  K  I  A  L  T  K :   E  V  L  G  G  L  *  K  L  H  C  K  K  R  Q  R  K  G  R  *  D  I  L  I  *  R  R  L  I  V  V  *  G  D  I  F  M  M  I  S  Q  S  *  S  C  F  L  I  Q  I  L  *  V  E  P  A  H  L  E  G  P  L  Y  L  *  K  E  V  V  *  T  S  Q  Q  K  V  W  L  P  L  P  H  N  L  V  L  L  D  L  S  T  V  L  Y  T  L  L  Y  P  F  *  N  L  L  *  Q  D  P  L  V  D  *  R  E  I  T  E  S  A  A  L  I  Y  S  F  V  V  Q  C  D  V  F  D  V  Q  C  N  V  *  L  G  T  D  V  F  I  N  F  I  S  R  Q  E  D  Q  I  F  F  L  E  D  E  T  S  L  L  I  F  Y  Q  F  Y  L  L  T  F  L  W  *  M  *  M  N  A  S  H  F  E  P  I  T  T  </first_frame>
            <second_frame>  R  G  K  K  K  L  K  K  L  P  F  F  L  L  L  S  S  S  S  S  S  F  P  F  S  S  P  T  F  N  *  K  T  D  I  *  R  E  K  G  K  Q  K  T  E  K  E  T  N  K  T  G  K  R  L  N  L  F  S  V  F  H  I  L  *  P  Y  I  L  I  N  S  G  *  S  L  M  D  L  *  I  *  R  L  L  A  T  F  N  C  I  F  T  L  C  D  S  V  I  L  Y  H  I  R  P  N  H  N   : *  Q  R  E  *  W  W  K  F  L  V  L  E  S  S  C  I  H  L  D  V  E  E  L  A  V  S  K  G  E  M  R  D  V  I  K  V  D  K  F  L  E  G  M  L  P  V  I  G  G  S  L  C  T  *  C  Y  R  F  S  W  T  A  R  W  T  F  L  V  *  G  Q  W  T  T  L  T  W  *  V  L  Y  G  S  C  S  G  Q  Q  F  A  G  G  S  E  P  D  *  V  R  F  F  E  L  A  *  F  W  P  I  W  N  V  C  W  G  I  *  W  S  W  W  A  *  N  I  T  V  Y  Q  *  S  P  L  S  E  S  Q  E :   V  C  S  *  T  K  F  H  V  C  *  C  N  T  K  S  V  S  S  N  R  G  G  I  H  F  S  S  C  S  A  V  A  N  E  T  S  D  G  F  C  W  S  M  L  S  G  W  G  D  L  *  W  D  P  L  C  C  Q  P  W  *  F  P  G  C  F  G  E  T  C  Q  G  Y  R  R  G  S  S  P  S  A  F  S  *  A  *  C  K  Y  *  V  C  Q  T  G  I  A  F  Y  A  S  G  *  P  T  D  S  R  S  E  A  *  C  M  A  C  K  G  S  D  T   : D  F  E  I  Y  W  R  F  I  S  Q  K  C  *  V  Q  *  R  A  I  V  C  K  I  S  F  A  R  T  F  Y  E  A  H  I  E  C  G  S  S  D  F  S  A  *  T  P  A  T  *  S  I  S  H  P  C  F  R  R  S  L  G  T  S  *  Q  S  R  G  S  *  Y  C  P  K  *  L  S  Q   : R  K  C  S  A  A  C  K  S  C  T  A  R  S  G  K  E  K  G  D  E  I  F  *  F  K  E  D  *  S  W  C  E  E  T  F  S  *  *  Y  L  S  H  S  R  V  S  *  F  K  S  C  E  *  S  Q  L  T  *  R  A  L  C  I  S  E  R  R  W  Y  E  L  P  S  K  K  S  G  S  H  S  R  I  T  W  Y  C  L  T  F  P  Q  C  C  I  L  C  C  I  L  S  E  T  C  Y  D  K  I  L  *  *  I  K  E  K  *  Q  K  V  R  H  *  F  I  L  L  L  C  N  V  M  F  L  M  F  N  V  T  F  N  L  E  Q  T  S  L  L  T  L  *  V  G  K  K  I  K  F  S  F  L  R  M  K  L  L  C  L  Y  S  I  N  F  T  C  S  L  F  C  G  K  C  K  *  M  P  L  I  L  N  P  *  R  Q </second_frame>
            <third_frame>   E  E  K  K  N  *  K  S  C  L  F  F  F  F  Y  L  L  L  H  L  P  F  H  S  H  L  P  H  S  T  E  K  Q  I  Y  R  E  K  K  E  N  K  K  L  K  K  K  P  T  K  Q  E  K  D  L  I  F  S  L  Y  F  I  F  F  N  R  I  F  S  *  T  L  V  D  L  *  W  I  C  R  S  N  V  Y  W  L  R  L  I  V  F  S  H  C  V  I  Q  *  Y  Y  T  I  *  G  L  I  T  T  :  N  K  G  S  S  G  G  S  F  *  F  W  R  A  V  A  S  I  W  M  L  R  N  W  R  *  A  K  V  K  *  G  M  L  S  R  L  I  N  F  L  K  A  C  C  R  S  S  A  D  R  Y  V  H  S  A  T  D  S  A  G  R  Q  D  G  L  F  W  Y  K  D  S  G  Q  H  L  L  G  E  F  S  M  A  V  V  Q  A  N  N  L  L  E  D  Q  S  Q  I  E  S  G  S  L  S  L  L  D  S  G  P  Y  G  T  F  V  G  V  Y  D  G  H  G  G  P  E  T  S  R  Y  I  N  D  H  L  F  Q  N  L  K   : R  S  A  A  E  Q  N  S  M  S  V  D  V  I  R  K  A  F  Q  A  T  E  E  G  F  I  S  L  V  A  Q  Q  W  L  T  K  P  Q  M  A  S  V  G  A  C  C  L  V  G  V  I  C  D  G  T  L  Y  V  A  N  L  G  D  S  R  A  V  L  G  R  L  V  R  A  T  G  E  V  L  A  L  Q  L  S  A  E  H  N  A  S  I  E  S  V  R  Q  E  L  H  S  M  H  P  D  D  P  Q  I  V  V  L  K  H  N  V  W  R  V  K  G  L  I  Q  :  I  S  R  S  I  G  D  L  Y  L  K  N  A  E  Y  N  K  E  P  L  Y  A  K  F  R  L  R  E  P  F  T  R  P  I  L  S  A  D  P  A  I  S  V  H  E  L  Q  P  H  D  Q  F  L  I  L  A  S  D  G  L  W  E  H  L  S  N  Q  E  A  V  D  I  V  Q  N  S  S  H  K  :  G  S  A  R  R  L  V  K  A  A  L  Q  E  A  A  K  K  R  E  M  R  Y  S  D  L  K  K  I  D  R  G  V  R  R  H  F  H  D  D  I  S  V  I  V  V  F  L  D  S  N  L  V  S  R  A  S  S  L  R  G  P  S  V  S  L  K  G  G  G  M  N  F  P  A  K  S  L  A  P  T  P  A  *  L  G  T  A  *  P  F  H  S  V  V  Y  F  A  V  S  F  L  K  L  V  M  T  R  S  F  S  R  L  K  R  N  N  R  K  C  G  T  N  L  F  F  C  C  A  M  *  C  F  *  C  S  M  *  R  L  T  W  N  R  R  L  Y  *  L  Y  K  *  A  R  R  S  N  F  L  S  *  G  *  N  F  S  A  Y  I  L  S  I  L  L  A  H  F  S  V  V  N  V  N  E  C  L  S  F  *  T  H  N  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15753" stop="16074"/>
                    <exon start="16245" stop="16612"/>
                    <exon start="17061" stop="17297"/>
                    <exon start="18037" stop="18285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMLSRLINFLKACCRSSADRYVHSATDSAGRQDGLFWYKDSGQHLLGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFVGVYDGHGGPETSRYINDHLFQNLKRSAAEQNSMSVDVIRKAFQATEEGFISLVAQQWLTKPQMASVGACCLVGVICDGTLYVANLGDSRAVLGRLVRATGEVLALQLSAEHNASIESVRQELHSMHPDDPQIVVLKHNVWRVKGLIQISRSIGDLYLKNAEYNKEPLYAKFRLREPFTRPILSADPAISVHELQPHDQFLILASDGLWEHLSNQEAVDIVQNSSHKGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVVFLDSNLVSRASSLRGPSVSLKGGGMNFPAKSLAPTPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15657" e_stop="16074"/>
            <exon e_start="16245" e_stop="16612"/>
            <exon e_start="17061" e_stop="17297"/>
            <exon e_start="18037" e_stop="18614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15657" e_stop="16074" e_length="418"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16075" i_stop="16244" i_length="170"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16245" e_stop="16612" e_length="368"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.940">
            <gDNA_intron_boundary i_start="16613" i_stop="17060" i_length="448"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17061" e_stop="17297" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17298" i_stop="18036" i_length="739"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="18037" e_stop="18614" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15657" stop="16074"/>
              <exon start="16245" stop="16612"/>
              <exon start="17061" stop="17084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15665" stop="16074"/>
              <exon start="16245" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15774" stop="16074"/>
              <exon start="16245" stop="16456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16253" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16253" stop="16612"/>
              <exon start="17061" stop="17233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16439" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16439" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16439" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16520" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577872" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16525" stop="16612"/>
              <exon start="17061" stop="17297"/>
              <exon start="18037" stop="18527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17114" stop="17297"/>
              <exon start="18037" stop="18526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17174" stop="17297"/>
              <exon start="18037" stop="18614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17180" stop="17297"/>
              <exon start="18037" stop="18478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17183" stop="17297"/>
              <exon start="18037" stop="18529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17203" stop="17297"/>
              <exon start="18037" stop="18521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17219" stop="17297"/>
              <exon start="18037" stop="18512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452577" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17256" stop="17297"/>
              <exon start="18037" stop="18448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413089" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17261" stop="17297"/>
              <exon start="18037" stop="18529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17262" stop="17297"/>
              <exon start="18037" stop="18526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18071" stop="18512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413828" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAACAAAGGGAGTAGTGGTGGAAGTTTTTAGTTTTGGAGAGCAGTTGCATCCATTTGGATGTTGAGGAATTGGCGGTAAGCAAAGGTGAAATGAGGGATGTTATCAAGGTTGATAAATTTCTTGAAGGCATGTTGCCGGTCATCGGCGGATCGTTATGTACATAGTGCTACAGATTCAGCTGGACGGCAAGATGGACTTTTTTGGTATAAGGACAGTGGACAACACTTACTTGGTGAGTTCTCTATGGCAGTTGTTCAGGCCAACAATTTGCTGGAGGATCAGAGCCAGATTGAGTCAGGTTCTTTGAGCTTGCTTGATTCTGGCCCATATGGAACGTTTGTTGGGGTATATGATGGTCATGGTGGGCCTGAAACATCACGGTATATCAATGATCACCTCTTTCAGAATCTCAAGA : GGTCTGCAGCTGAACAAAATTCCATGTCTGTTGATGTAATACGAAAAGCGTTTCAAGCAACAGAGGAGGGATTCATTTCTCTAGTTGCTCAGCAGTGGCTAACGAAACCTCAGATGGCTTCTGTTGGAGCATGCTGTCTGGTTGGGGTGATCTGTGATGGGACCCTTTATGTTGCCAACCTTGGTGATTCCCGGGCTGTTTTGGGGAGACTTGTCAGGGCTACAGGAGAGGTTCTAGCCCTTCAGCTTTCAGCTGAGCATAATGCAAGTATTGAGTCTGTCAGACAGGAATTGCATTCTATGCATCCGGATGACCCACAGATAGTCGTTCTGAAGCATAATGTATGGCGTGTAAAGGGTCTGATACAG : ATTTCGAGATCTATTGGCGATTTATATCTCAAAAATGCTGAGTACAATAAAGAGCCATTGTATGCAAAATTTCGTTTGCGAGAACCTTTTACGAGGCCCATATTGAGTGCGGATCCAGCGATTTCAGTGCATGAACTCCAGCCACATGATCAATTTCTCATCCTTGCTTCCGACGGTCTTTGGGAACATCTTAGCAATCAAGAGGCAGTTGATATTGTCCAAAATAGCTCTCACAAA : GGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTCTTGAGGATGAAACTTCTCTGCTTATATTCTATCAATTTTACTTGCTCACTTTTCTGTGGTAAATGTAAATGAATGCCTCTCATTTTGAACCCATAACGACAG</gDNA_template>
            <first_frame> Q  N  K  G  S  S  G  G  S  F  *  F  W  R  A  V  A  S  I  W  M  L  R  N  W  R  *  A  K  V  K  *  G  M  L  S  R  L  I  N  F  L  K  A  C  C  R  S  S  A  D  R  Y  V  H  S  A  T  D  S  A  G  R  Q  D  G  L  F  W  Y  K  D  S  G  Q  H  L  L  G  E  F  S  M  A  V  V  Q  A  N  N  L  L  E  D  Q  S  Q  I  E  S  G  S  L  S  L  L  D  S  G  P  Y  G  T  F  V  G  V  Y  D  G  H  G  G  P  E  T  S  R  Y  I  N  D  H  L  F  Q  N  L  K   : R  S  A  A  E  Q  N  S  M  S  V  D  V  I  R  K  A  F  Q  A  T  E  E  G  F  I  S  L  V  A  Q  Q  W  L  T  K  P  Q  M  A  S  V  G  A  C  C  L  V  G  V  I  C  D  G  T  L  Y  V  A  N  L  G  D  S  R  A  V  L  G  R  L  V  R  A  T  G  E  V  L  A  L  Q  L  S  A  E  H  N  A  S  I  E  S  V  R  Q  E  L  H  S  M  H  P  D  D  P  Q  I  V  V  L  K  H  N  V  W  R  V  K  G  L  I  Q  :  I  S  R  S  I  G  D  L  Y  L  K  N  A  E  Y  N  K  E  P  L  Y  A  K  F  R  L  R  E  P  F  T  R  P  I  L  S  A  D  P  A  I  S  V  H  E  L  Q  P  H  D  Q  F  L  I  L  A  S  D  G  L  W  E  H  L  S  N  Q  E  A  V  D  I  V  Q  N  S  S  H  K  :  G  S  A  R  R  L  V  K  A  A  L  Q  E  A  A  K  K  R  E  M  R  Y  S  D  L  K  K  I  D  R  G  V  R  R  H  F  H  D  D  I  S  V  I  V  V  F  L  D  S  N  L  V  S  R  A  S  S  L  R  G  P  S  V  S  L  K  G  G  G  M  N  F  P  A  K  S  L  A  P  T  P  A  *  L  G  T  A  *  P  F  H  S  V  V  Y  F  A  V  S  F  L  K  L  V  M  T  R  S  F  S  R  L  K  R  N  N  R  K  C  G  T  N  L  F  F  C  C  A  M  *  C  F  *  C  S  M  *  R  L  T  W  N  R  R  L  Y  *  L  Y  K  *  A  R  R  S  N  F  L  S  *  G  *  N  F  S  A  Y  I  L  S  I  L  L  A  H  F  S  V  V  N  V  N  E  C  L  S  F  *  T  H  N  D   </first_frame>
            <second_frame>  R  T  K  G  V  V  V  E  V  F  S  F  G  E  Q  L  H  P  F  G  C  *  G  I  G  G  K  Q  R  *  N  E  G  C  Y  Q  G  *  *  I  S  *  R  H  V  A  G  H  R  R  I  V  M  Y  I  V  L  Q  I  Q  L  D  G  K  M  D  F  F  G  I  R  T  V  D  N  T  Y  L  V  S  S  L  W  Q  L  F  R  P  T  I  C  W  R  I  R  A  R  L  S  Q  V  L  *  A  C  L  I  L  A  H  M  E  R  L  L  G  Y  M  M  V  M  V  G  L  K  H  H  G  I  S  M  I  T  S  F  R  I  S  R  :  G  L  Q  L  N  K  I  P  C  L  L  M  *  Y  E  K  R  F  K  Q  Q  R  R  D  S  F  L  *  L  L  S  S  G  *  R  N  L  R  W  L  L  L  E  H  A  V  W  L  G  *  S  V  M  G  P  F  M  L  P  T  L  V  I  P  G  L  F  W  G  D  L  S  G  L  Q  E  R  F  *  P  F  S  F  Q  L  S  I  M  Q  V  L  S  L  S  D  R  N  C  I  L  C  I  R  M  T  H  R  *  S  F  *  S  I  M  Y  G  V  *  R  V  *  Y  R :   F  R  D  L  L  A  I  Y  I  S  K  M  L  S  T  I  K  S  H  C  M  Q  N  F  V  C  E  N  L  L  R  G  P  Y  *  V  R  I  Q  R  F  Q  C  M  N  S  S  H  M  I  N  F  S  S  L  L  P  T  V  F  G  N  I  L  A  I  K  R  Q  L  I  L  S  K  I  A  L  T  K :   E  V  L  G  G  L  *  K  L  H  C  K  K  R  Q  R  K  G  R  *  D  I  L  I  *  R  R  L  I  V  V  *  G  D  I  F  M  M  I  S  Q  S  *  S  C  F  L  I  Q  I  L  *  V  E  P  A  H  L  E  G  P  L  Y  L  *  K  E  V  V  *  T  S  Q  Q  K  V  W  L  P  L  P  H  N  L  V  L  L  D  L  S  T  V  L  Y  T  L  L  Y  P  F  *  N  L  L  *  Q  D  P  L  V  D  *  R  E  I  T  E  S  A  A  L  I  Y  S  F  V  V  Q  C  D  V  F  D  V  Q  C  N  V  *  L  G  T  D  V  F  I  N  F  I  S  R  Q  E  D  Q  I  F  F  L  E  D  E  T  S  L  L  I  F  Y  Q  F  Y  L  L  T  F  L  W  *  M  *  M  N  A  S  H  F  E  P  I  T  T  </second_frame>
            <third_frame>   E  Q  R  E  *  W  W  K  F  L  V  L  E  S  S  C  I  H  L  D  V  E  E  L  A  V  S  K  G  E  M  R  D  V  I  K  V  D  K  F  L  E  G  M  L  P  V  I  G  G  S  L  C  T  *  C  Y  R  F  S  W  T  A  R  W  T  F  L  V  *  G  Q  W  T  T  L  T  W  *  V  L  Y  G  S  C  S  G  Q  Q  F  A  G  G  S  E  P  D  *  V  R  F  F  E  L  A  *  F  W  P  I  W  N  V  C  W  G  I  *  W  S  W  W  A  *  N  I  T  V  Y  Q  *  S  P  L  S  E  S  Q  E :   V  C  S  *  T  K  F  H  V  C  *  C  N  T  K  S  V  S  S  N  R  G  G  I  H  F  S  S  C  S  A  V  A  N  E  T  S  D  G  F  C  W  S  M  L  S  G  W  G  D  L  *  W  D  P  L  C  C  Q  P  W  *  F  P  G  C  F  G  E  T  C  Q  G  Y  R  R  G  S  S  P  S  A  F  S  *  A  *  C  K  Y  *  V  C  Q  T  G  I  A  F  Y  A  S  G  *  P  T  D  S  R  S  E  A  *  C  M  A  C  K  G  S  D  T   : D  F  E  I  Y  W  R  F  I  S  Q  K  C  *  V  Q  *  R  A  I  V  C  K  I  S  F  A  R  T  F  Y  E  A  H  I  E  C  G  S  S  D  F  S  A  *  T  P  A  T  *  S  I  S  H  P  C  F  R  R  S  L  G  T  S  *  Q  S  R  G  S  *  Y  C  P  K  *  L  S  Q   : R  K  C  S  A  A  C  K  S  C  T  A  R  S  G  K  E  K  G  D  E  I  F  *  F  K  E  D  *  S  W  C  E  E  T  F  S  *  *  Y  L  S  H  S  R  V  S  *  F  K  S  C  E  *  S  Q  L  T  *  R  A  L  C  I  S  E  R  R  W  Y  E  L  P  S  K  K  S  G  S  H  S  R  I  T  W  Y  C  L  T  F  P  Q  C  C  I  L  C  C  I  L  S  E  T  C  Y  D  K  I  L  *  *  I  K  E  K  *  Q  K  V  R  H  *  F  I  L  L  L  C  N  V  M  F  L  M  F  N  V  T  F  N  L  E  Q  T  S  L  L  T  L  *  V  G  K  K  I  K  F  S  F  L  R  M  K  L  L  C  L  Y  S  I  N  F  T  C  S  L  F  C  G  K  C  K  *  M  P  L  I  L  N  P  *  R  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15753" stop="16074"/>
                    <exon start="16245" stop="16612"/>
                    <exon start="17061" stop="17297"/>
                    <exon start="18037" stop="18285"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMLSRLINFLKACCRSSADRYVHSATDSAGRQDGLFWYKDSGQHLLGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFVGVYDGHGGPETSRYINDHLFQNLKRSAAEQNSMSVDVIRKAFQATEEGFISLVAQQWLTKPQMASVGACCLVGVICDGTLYVANLGDSRAVLGRLVRATGEVLALQLSAEHNASIESVRQELHSMHPDDPQIVVLKHNVWRVKGLIQISRSIGDLYLKNAEYNKEPLYAKFRLREPFTRPILSADPAISVHELQPHDQFLILASDGLWEHLSNQEAVDIVQNSSHKGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVVFLDSNLVSRASSLRGPSVSLKGGGMNFPAKSLAPTPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="17376" e_stop="18512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="17376" e_stop="18512" e_length="1137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17376" stop="17769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17379" stop="17998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17749" stop="18428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18071" stop="18512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413828" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTTGGTCTGATTTTCCTTAGGCAGTCCTGTTTATATTTTAAGCACATTACAAACTCACGTAGCCTGGTAGTTCTTTTCTTTGCTAATCACCGCATTATTGCACTGAAAGCTTTAATTATAATTTACTCCCCCCTTTTGGTTATACACAGTTACATTGCATCTTAAAAAAATTACATCATTTAACATCATGTGCAGATTTAGAGAGCAGATTATTTCGGTAATTACATCTTGTAGTCACTAATTATATTGCTCGTAAAAAGCACAATGCGGTAGAAATGTTCCATGTCTTTGACATACCAGAAACAAATTGAACTCCTATTCTTAGATACTCATCTATAGTCAATAAAAGGCAAAATTATGTGTACCACGAGCACACCCATTTGACGAAAACATTAGTTTACTTAACAAAAGCTATCAGATTAGCGAACGACAATTACTTTGTGAAGTATGAAAAATGGAAATAAGAAACTTCAAAGTTCATTCTTCGGATGCTTGAATGGAAGTACACAGGGCTTATACTTCCCTGTCAAATTCCCTTTCGTGTATGTTGTTCCGTGTGTTGCCATCATGAATAAGGGTTGAGGTTCATCTGAATGTTGATGGATTTCAATGTTGAGCTTATTAGGAAAGTAACTACATTTTCTATATTCATTCTTCAGGGAAGTGCTCGGCGGCTTGTAAAAGCTGCACTGCAAGAAGCGGCAAAGAAAAGGGAGATGAGATATTCTGATTTAAAGAAGATTGATCGTGGTGTGAGGAGACATTTTCATGATGATATCTCAGTCATAGTCGTGTTTCTTGATTCAAATCTTGTGAGTAGAGCCAGCTCACTTAGAGGGCCCTCTGTATCTCTGAAAGGAGGTGGTATGAACTTCCCAGCAAAAAGTCTGGCTCCCACTCCCGCATAACTTGGTACTGCTTGACCTTTCCACAGTGTTGTATACTTTGCTGTATCCTTTCTGAAACTTGTTATGACAAGATCCTTTAGTAGATTAAAGAGAAATAACAGAAAGTGCGGCACTAATTTATTCTTTTGTTGTGCAATGTGATGTTTTTGATGTTCAATGTAACGTTTAACTTGGAACAGACGTCTTTATTAACTTTATAAGTAGGCAAGAAGATCAAATTTTCTTTC</gDNA_template>
            <first_frame> K  L  V  *  F  S  L  G  S  P  V  Y  I  L  S  T  L  Q  T  H  V  A  W  *  F  F  S  L  L  I  T  A  L  L  H  *  K  L  *  L  *  F  T  P  P  F  W  L  Y  T  V  T  L  H  L  K  K  I  T  S  F  N  I  M  C  R  F  R  E  Q  I  I  S  V  I  T  S  C  S  H  *  L  Y  C  S  *  K  A  Q  C  G  R  N  V  P  C  L  *  H  T  R  N  K  L  N  S  Y  S  *  I  L  I  Y  S  Q  *  K  A  K  L  C  V  P  R  A  H  P  F  D  E  N  I  S  L  L  N  K  S  Y  Q  I  S  E  R  Q  L  L  C  E  V  *  K  M  E  I  R  N  F  K  V  H  S  S  D  A  *  M  E  V  H  R  A  Y  T  S  L  S  N  S  L  S  C  M  L  F  R  V  L  P  S  *  I  R  V  E  V  H  L  N  V  D  G  F  Q  C  *  A  Y  *  E  S  N  Y  I  F  Y  I  H  S  S  G  K  C  S  A  A  C  K  S  C  T  A  R  S  G  K  E  K  G  D  E  I  F  *  F  K  E  D  *  S  W  C  E  E  T  F  S  *  *  Y  L  S  H  S  R  V  S  *  F  K  S  C  E  *  S  Q  L  T  *  R  A  L  C  I  S  E  R  R  W  Y  E  L  P  S  K  K  S  G  S  H  S  R  I  T  W  Y  C  L  T  F  P  Q  C  C  I  L  C  C  I  L  S  E  T  C  Y  D  K  I  L  *  *  I  K  E  K  *  Q  K  V  R  H  *  F  I  L  L  L  C  N  V  M  F  L  M  F  N  V  T  F  N  L  E  Q  T  S  L  L  T  L  *  V  G  K  K  I  K  F  S  F </first_frame>
            <second_frame>  S  W  S  D  F  P  *  A  V  L  F  I  F  *  A  H  Y  K  L  T  *  P  G  S  S  F  L  C  *  S  P  H  Y  C  T  E  S  F  N  Y  N  L  L  P  P  F  G  Y  T  Q  L  H  C  I  L  K  K  L  H  H  L  T  S  C  A  D  L  E  S  R  L  F  R  *  L  H  L  V  V  T  N  Y  I  A  R  K  K  H  N  A  V  E  M  F  H  V  F  D  I  P  E  T  N  *  T  P  I  L  R  Y  S  S  I  V  N  K  R  Q  N  Y  V  Y  H  E  H  T  H  L  T  K  T  L  V  Y  L  T  K  A  I  R  L  A  N  D  N  Y  F  V  K  Y  E  K  W  K  *  E  T  S  K  F  I  L  R  M  L  E  W  K  Y  T  G  L  I  L  P  C  Q  I  P  F  R  V  C  C  S  V  C  C  H  H  E  *  G  L  R  F  I  *  M  L  M  D  F  N  V  E  L  I  R  K  V  T  T  F  S  I  F  I  L  Q  G  S  A  R  R  L  V  K  A  A  L  Q  E  A  A  K  K  R  E  M  R  Y  S  D  L  K  K  I  D  R  G  V  R  R  H  F  H  D  D  I  S  V  I  V  V  F  L  D  S  N  L  V  S  R  A  S  S  L  R  G  P  S  V  S  L  K  G  G  G  M  N  F  P  A  K  S  L  A  P  T  P  A  *  L  G  T  A  *  P  F  H  S  V  V  Y  F  A  V  S  F  L  K  L  V  M  T  R  S  F  S  R  L  K  R  N  N  R  K  C  G  T  N  L  F  F  C  C  A  M  *  C  F  *  C  S  M  *  R  L  T  W  N  R  R  L  Y  *  L  Y  K  *  A  R  R  S  N  F  L   </second_frame>
            <third_frame>   V  G  L  I  F  L  R  Q  S  C  L  Y  F  K  H  I  T  N  S  R  S  L  V  V  L  F  F  A  N  H  R  I  I  A  L  K  A  L  I  I  I  Y  S  P  L  L  V  I  H  S  Y  I  A  S  *  K  N  Y  I  I  *  H  H  V  Q  I  *  R  A  D  Y  F  G  N  Y  I  L  *  S  L  I  I  L  L  V  K  S  T  M  R  *  K  C  S  M  S  L  T  Y  Q  K  Q  I  E  L  L  F  L  D  T  H  L  *  S  I  K  G  K  I  M  C  T  T  S  T  P  I  *  R  K  H  *  F  T  *  Q  K  L  S  D  *  R  T  T  I  T  L  *  S  M  K  N  G  N  K  K  L  Q  S  S  F  F  G  C  L  N  G  S  T  Q  G  L  Y  F  P  V  K  F  P  F  V  Y  V  V  P  C  V  A  I  M  N  K  G  *  G  S  S  E  C  *  W  I  S  M  L  S  L  L  G  K  *  L  H  F  L  Y  S  F  F  R  E  V  L  G  G  L  *  K  L  H  C  K  K  R  Q  R  K  G  R  *  D  I  L  I  *  R  R  L  I  V  V  *  G  D  I  F  M  M  I  S  Q  S  *  S  C  F  L  I  Q  I  L  *  V  E  P  A  H  L  E  G  P  L  Y  L  *  K  E  V  V  *  T  S  Q  Q  K  V  W  L  P  L  P  H  N  L  V  L  L  D  L  S  T  V  L  Y  T  L  L  Y  P  F  *  N  L  L  *  Q  D  P  L  V  D  *  R  E  I  T  E  S  A  A  L  I  Y  S  F  V  V  Q  C  D  V  F  D  V  Q  C  N  V  *  L  G  T  D  V  F  I  N  F  I  S  R  Q  E  D  Q  I  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17971" stop="18285"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLMDFNVELIRKVTTFSIFILQGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDISVIVVFLDSNLVSRASSLRGPSVSLKGGGMNFPAKSLAPTPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="23481" PGL_stop="21945"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23481" e_stop="21945"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="23481" e_stop="21945" e_length="1537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23481" stop="22641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23476" stop="22828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23468" stop="22938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23245" stop="22505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22681" stop="21945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372194" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCCTTCCCGCCACTCTCCCTCACCCTTCCTCAACTCTTTTCTCCACGCGCCGCCGCTTCCCACTACTAAAACCGCCGTATGCTTCCTCAAATATACCCGTTGGCTCAACTTCTCAGCCTAATACCACCGGAGTCATTGTCATCGGCGGCGGTTTAGCTGGCCTAGCAGCTGCCATTCGGCTTCAAGCTGACAACATCCCCTTTCTCCTTCTCGAAGCTTCTGATGCCGTTGGTGGTCGCGTTCGGTCCGATGTAGTTGACGGATATACCCTTGATCGTGGTTTCCAGATTTTCATTACTGGTTATCCTGAAGCCCGAAAAGTCCTTGATTATGACTCTTTAGACCTCAGAAAATTCTATTCGGGGGCTCAGGTTTACTATGGTGGTCGTTTCCACACCGTTGCTGATCCTCTCCGGCATTTCGCAGATGCACTGCAATCTTTAACTAACCCAATTGGTTCAGTTGTGGATAAATTACTTATAGGATTGACTAGATTGAAAGTTTTGACGCAAGGTGATGATGAAATATTGAGTGCTGATGAAGAACCTACGATGAATTTATTAAAGAAGATCGGTTTTTCTGATGCAATATTGGAAAGGTTCTTTCGACCGTTTTTTGGTGGAATTTTCTTCGATAGAGAGCTTGAAACAACGTCGCGGCTGTTCAATTTCATCTTCAAATGCCTAGCTCTTGGTGACAACACACTTCCGGCGAAGGGCATTGCGGCCATTCCGGAACAGTTGGCGGCAAAACTGCCGTCGAATTCAATATTGTTCAATACACGTGTTGTTTCCGTTGATTCAGGATCGGATTCCAGCACAAAAATAAGAGTGACACTACAAAATGGGGAAATGTTGGAAAGTGAATTTGGGGTAATATTGGCAGTTGAAGAGCCTGAAGCTGTCAAGTTGTTGGCGGGAGAAAAAACCGGTGAGGTTCGGCAACCGGTTCGGAGCACAGTATGTTTGTATTTTTCAGCTGACCAAGGCAAAGTTCCGGTGCAGGATCCGGTTCTTCTTCTTAACGGATCGGGTAAAGGTATCGTTAATAACATGTTCTTCGCGACCAATGTGGCTCCCTCTTATGCTCCGGCAGGGAAGGCACTGGTTTCTGTCACGCTTGTGGGGCTTTATGGTGATGTGGCAGATGAGGATTTGGTGGATCGGGTCGTGAAGGAGCTATCGGGTTGGTTTGGGGAGTCGGTAGTTGGGTCATGGGGTTACTTGAGGATGTACAGGATCGGGTTTGCCCAACCGAACCAATGCCCACCCACTAACTTGAAGAAGAACCCGAAAGTGAAACCGGGCTTGTACATTTGTGGAGATTATGTGACTAGCGCTACTTTTGATGGAGCTTTAGTTTCTGGGAAAAAAGCAGCAGAAACTTTGTTACAAGATAAAGCTCTGGTTATTGTATAGCTTAATTTTGGTTTGAGTTTTTTTTCCACTTGTGTAAAAGTAGAAGTTTTGAATGTTGTTGATTTATTTGTATATGGAATCATAAACGTTTCGAGATCATTTACATGCAATAATTGT</gDNA_template>
            <first_frame> L  P  S  R  H  S  P  S  P  F  L  N  S  F  L  H  A  P  P  L  P  T  T  K  T  A  V  C  F  L  K  Y  T  R  W  L  N  F  S  A  *  Y  H  R  S  H  C  H  R  R  R  F  S  W  P  S  S  C  H  S  A  S  S  *  Q  H  P  L  S  P  S  R  S  F  *  C  R  W  W  S  R  S  V  R  C  S  *  R  I  Y  P  *  S  W  F  P  D  F  H  Y  W  L  S  *  S  P  K  S  P  *  L  *  L  F  R  P  Q  K  I  L  F  G  G  S  G  L  L  W  W  S  F  P  H  R  C  *  S  S  P  A  F  R  R  C  T  A  I  F  N  *  P  N  W  F  S  C  G  *  I  T  Y  R  I  D  *  I  E  S  F  D  A  R  *  *  *  N  I  E  C  *  *  R  T  Y  D  E  F  I  K  E  D  R  F  F  *  C  N  I  G  K  V  L  S  T  V  F  W  W  N  F  L  R  *  R  A  *  N  N  V  A  A  V  Q  F  H  L  Q  M  P  S  S  W  *  Q  H  T  S  G  E  G  H  C  G  H  S  G  T  V  G  G  K  T  A  V  E  F  N  I  V  Q  Y  T  C  C  F  R  *  F  R  I  G  F  Q  H  K  N  K  S  D  T  T  K  W  G  N  V  G  K  *  I  W  G  N  I  G  S  *  R  A  *  S  C  Q  V  V  G  G  R  K  N  R  *  G  S  A  T  G  S  E  H  S  M  F  V  F  F  S  *  P  R  Q  S  S  G  A  G  S  G  S  S  S  *  R  I  G  *  R  Y  R  *  *  H  V  L  R  D  Q  C  G  S  L  L  C  S  G  R  E  G  T  G  F  C  H  A  C  G  A  L  W  *  C  G  R  *  G  F  G  G  S  G  R  E  G  A  I  G  L  V  W  G  V  G  S  W  V  M  G  L  L  E  D  V  Q  D  R  V  C  P  T  E  P  M  P  T  H  *  L  E  E  E  P  E  S  E  T  G  L  V  H  L  W  R  L  C  D  *  R  Y  F  *  W  S  F  S  F  W  E  K  S  S  R  N  F  V  T  R  *  S  S  G  Y  C  I  A  *  F  W  F  E  F  F  F  H  L  C  K  S  R  S  F  E  C  C  *  F  I  C  I  W  N  H  K  R  F  E  I  I  Y  M  Q  *  L  </first_frame>
            <second_frame>  C  L  P  A  T  L  P  H  P  S  S  T  L  F  S  T  R  R  R  F  P  L  L  K  P  P  Y  A  S  S  N  I  P  V  G  S  T  S  Q  P  N  T  T  G  V  I  V  I  G  G  G  L  A  G  L  A  A  A  I  R  L  Q  A  D  N  I  P  F  L  L  L  E  A  S  D  A  V  G  G  R  V  R  S  D  V  V  D  G  Y  T  L  D  R  G  F  Q  I  F  I  T  G  Y  P  E  A  R  K  V  L  D  Y  D  S  L  D  L  R  K  F  Y  S  G  A  Q  V  Y  Y  G  G  R  F  H  T  V  A  D  P  L  R  H  F  A  D  A  L  Q  S  L  T  N  P  I  G  S  V  V  D  K  L  L  I  G  L  T  R  L  K  V  L  T  Q  G  D  D  E  I  L  S  A  D  E  E  P  T  M  N  L  L  K  K  I  G  F  S  D  A  I  L  E  R  F  F  R  P  F  F  G  G  I  F  F  D  R  E  L  E  T  T  S  R  L  F  N  F  I  F  K  C  L  A  L  G  D  N  T  L  P  A  K  G  I  A  A  I  P  E  Q  L  A  A  K  L  P  S  N  S  I  L  F  N  T  R  V  V  S  V  D  S  G  S  D  S  S  T  K  I  R  V  T  L  Q  N  G  E  M  L  E  S  E  F  G  V  I  L  A  V  E  E  P  E  A  V  K  L  L  A  G  E  K  T  G  E  V  R  Q  P  V  R  S  T  V  C  L  Y  F  S  A  D  Q  G  K  V  P  V  Q  D  P  V  L  L  L  N  G  S  G  K  G  I  V  N  N  M  F  F  A  T  N  V  A  P  S  Y  A  P  A  G  K  A  L  V  S  V  T  L  V  G  L  Y  G  D  V  A  D  E  D  L  V  D  R  V  V  K  E  L  S  G  W  F  G  E  S  V  V  G  S  W  G  Y  L  R  M  Y  R  I  G  F  A  Q  P  N  Q  C  P  P  T  N  L  K  K  N  P  K  V  K  P  G  L  Y  I  C  G  D  Y  V  T  S  A  T  F  D  G  A  L  V  S  G  K  K  A  A  E  T  L  L  Q  D  K  A  L  V  I  V  *  L  N  F  G  L  S  F  F  S  T  C  V  K  V  E  V  L  N  V  V  D  L  F  V  Y  G  I  I  N  V  S  R  S  F  T  C  N  N  C </second_frame>
            <third_frame>   A  F  P  P  L  S  L  T  L  P  Q  L  F  S  P  R  A  A  A  S  H  Y  *  N  R  R  M  L  P  Q  I  Y  P  L  A  Q  L  L  S  L  I  P  P  E  S  L  S  S  A  A  V  *  L  A  *  Q  L  P  F  G  F  K  L  T  T  S  P  F  S  F  S  K  L  L  M  P  L  V  V  A  F  G  P  M  *  L  T  D  I  P  L  I  V  V  S  R  F  S  L  L  V  I  L  K  P  E  K  S  L  I  M  T  L  *  T  S  E  N  S  I  R  G  L  R  F  T  M  V  V  V  S  T  P  L  L  I  L  S  G  I  S  Q  M  H  C  N  L  *  L  T  Q  L  V  Q  L  W  I  N  Y  L  *  D  *  L  D  *  K  F  *  R  K  V  M  M  K  Y  *  V  L  M  K  N  L  R  *  I  Y  *  R  R  S  V  F  L  M  Q  Y  W  K  G  S  F  D  R  F  L  V  E  F  S  S  I  E  S  L  K  Q  R  R  G  C  S  I  S  S  S  N  A  *  L  L  V  T  T  H  F  R  R  R  A  L  R  P  F  R  N  S  W  R  Q  N  C  R  R  I  Q  Y  C  S  I  H  V  L  F  P  L  I  Q  D  R  I  P  A  Q  K  *  E  *  H  Y  K  M  G  K  C  W  K  V  N  L  G  *  Y  W  Q  L  K  S  L  K  L  S  S  C  W  R  E  K  K  P  V  R  F  G  N  R  F  G  A  Q  Y  V  C  I  F  Q  L  T  K  A  K  F  R  C  R  I  R  F  F  F  L  T  D  R  V  K  V  S  L  I  T  C  S  S  R  P  M  W  L  P  L  M  L  R  Q  G  R  H  W  F  L  S  R  L  W  G  F  M  V  M  W  Q  M  R  I  W  W  I  G  S  *  R  S  Y  R  V  G  L  G  S  R  *  L  G  H  G  V  T  *  G  C  T  G  S  G  L  P  N  R  T  N  A  H  P  L  T  *  R  R  T  R  K  *  N  R  A  C  T  F  V  E  I  M  *  L  A  L  L  L  M  E  L  *  F  L  G  K  K  Q  Q  K  L  C  Y  K  I  K  L  W  L  L  Y  S  L  I  L  V  *  V  F  F  P  L  V  *  K  *  K  F  *  M  L  L  I  Y  L  Y  M  E  S  *  T  F  R  D  H  L  H  A  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23480" stop="22062"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1416</number_coding_nucleotides>
                  <number_encoded_amino_acids>472</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLPATLPHPSSTLFSTRRRFPLLKPPYASSNIPVGSTSQPNTTGVIVIGGGLAGLAAAIRLQADNIPFLLLEASDAVGGRVRSDVVDGYTLDRGFQIFITGYPEARKVLDYDSLDLRKFYSGAQVYYGGRFHTVADPLRHFADALQSLTNPIGSVVDKLLIGLTRLKVLTQGDDEILSADEEPTMNLLKKIGFSDAILERFFRPFFGGIFFDRELETTSRLFNFIFKCLALGDNTLPAKGIAAIPEQLAAKLPSNSILFNTRVVSVDSGSDSSTKIRVTLQNGEMLESEFGVILAVEEPEAVKLLAGEKTGEVRQPVRSTVCLYFSADQGKVPVQDPVLLLNGSGKGIVNNMFFATNVAPSYAPAGKALVSVTLVGLYGDVADEDLVDRVVKELSGWFGESVVGSWGYLRMYRIGFAQPNQCPPTNLKKNPKVKPGLYICGDYVTSATFDGALVSGKKAAETLLQDKALVIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="27167" PGL_stop="25161"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27167" e_stop="26846"/>
            <exon e_start="26474" e_stop="26296"/>
            <exon e_start="26153" e_stop="26070"/>
            <exon e_start="25990" e_stop="25823"/>
            <exon e_start="25725" e_stop="25475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.811" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27167" e_stop="26846" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26845" i_stop="26475" i_length="371"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26474" e_stop="26296" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.811" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26295" i_stop="26154" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26153" e_stop="26070" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="26069" i_stop="25991" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25990" e_stop="25823" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="25822" i_stop="25726" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25725" e_stop="25475" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27167" stop="26846"/>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27154" stop="26846"/>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27079" stop="26846"/>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26070"/>
              <exon start="25990" stop="25823"/>
              <exon start="25725" stop="25607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27076" stop="26846"/>
              <exon start="26474" stop="26326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26875" stop="26846"/>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26070"/>
              <exon start="25990" stop="25823"/>
              <exon start="25725" stop="25475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26875" stop="26846"/>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26070"/>
              <exon start="25990" stop="25917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26874" stop="26846"/>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26070"/>
              <exon start="25990" stop="25823"/>
              <exon start="25725" stop="25484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26874" stop="26846"/>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26070"/>
              <exon start="25990" stop="25823"/>
              <exon start="25725" stop="25578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26865" stop="26846"/>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26070"/>
              <exon start="25990" stop="25941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26070"/>
              <exon start="25990" stop="25823"/>
              <exon start="25725" stop="25475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG : TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG : ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG : ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAG : GACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTC</gDNA_template>
            <first_frame> T  P  S  S  L  C  L  L  L  Y  I  H  R  Y  F  Q  K  K  H  I  Y  I  C  C  F  L  G  A  P  E  S  L  Y  *  *  G  Q  T  P  R  F  F  S  N  P  S  S  T  Y  K  K  R  M  D  F  Y  A  Y  P  S  R  A  L  P  S  S  S  S  V  S  N  F  S  I  G  D  F  V  E  R  V  K  Y  C  F  S  F  A  V  S  T  I  V  G  N  V  F  S  A  I  F  T  F  F  F  A  L   : V  G  T  L  L  G  A  M  T  G  A  L  I  G  Q  E  T  E  S  G  F  V  R  G  A  A  V  G  A  I  S  G  A  V  F  S  L  E  V  F  E  S  S  L  L  L  W  Q  S  D  E  S  G  I  G  C  L  L  Y  L  :  I  D  V  I  A  S  L  L  S  G  R  L  V  R  E  R  I  G  P  A  M  L  S  A  V  Q  S  Q  :  M  G  A  I  E  S  A  Y  D  E  F  P  N  I  F  D  V  G  G  A  K  G  L  P  G  D  S  V  E  K  I  P  K  I  V  I  T  N  D  N  D  V  D  D  S  G  E  R  V  S  C  S  V  C  L  Q  :  D  F  Q  R  G  E  T  A  R  C  L  P  Q  C  H  H  M  F  H  L  P  C  I  D  T  W  L  L  R  H  G  S  C  P  L  C  R  R  D  L  *  V  I  I  L  C  K  L  *  C  G  Y  F  I  S  S  Y  L  A  V  G  F  L  Y  F  L  S  S  L  V  P  I  F  L  K  I  *  C  N  L  E  L  R   </first_frame>
            <second_frame>  H  L  L  L  F  A  Y  S  Y  I  Y  I  A  T  F  K  K  N  T  Y  I  F  A  A  F  L  E  P  Q  N  L  Y  T  N  K  D  K  P  Q  D  F  S  R  I  H  H  R  P  T  K  K  E  W  T  F  M  H  T  H  L  V  L  C  L  H  H  P  L  F  L  I  F  Q  S  E  I  S  L  K  G  L  N  I  V  L  A  L  P  Y  L  R  S  S  A  M  Y  S  L  Q  S  S  P  F  S  L  H  *  :  W  A  P  Y  *  E  Q  *  L  E  L  *  *  G  R  R  Q  K  V  D  L  L  E  V  L  Q  L  V  P  Y  L  V  L  F  S  L  L  K  S  L  N  H  L  Y  Y  Y  G  S  L  M  N  L  V  L  V  V  F  F  T  * :   L  M  *  S  R  A  Y  *  V  V  D  *  F  V  S  G  L  V  L  Q  C  *  V  Q  Y  R  V  R :   W  E  P  L  N  L  R  M  T  S  S  L  T  F  S  M  *  V  G  Q  R  V  Y  L  E  I  L  L  K  R  Y  L  R  L  *  L  L  M  I  M  M  W  M  I  R  E  R  E  S  P  V  Q  S  A  Y  R :   T  S  N  G  E  R  L  L  D  V  Y  H  N  V  I  T  C  F  T  F  L  A  S  I  H  G  C  *  G  M  D  L  V  H  C  A  E  G  I  C  R  *  L  Y  S  V  N  Y  N  V  V  I  L  F  P  H  T  W  L  *  D  F  S  I  S  C  P  R  L  Y  Q  F  S  *  K  Y  N  V  I  *  S  C  A  </second_frame>
            <third_frame>   T  F  F  S  L  P  T  L  I  Y  T  S  L  L  S  K  K  T  H  I  Y  L  L  L  S  W  S  P  R  I  F  I  L  I  R  T  N  P  K  I  F  L  E  S  I  I  D  L  Q  K  K  N  G  L  L  C  I  P  I  S  C  F  A  F  I  I  L  C  F  *  F  F  N  R  R  F  R  *  K  G  *  I  L  F  *  L  C  R  I  Y  D  R  R  Q  C  I  L  C  N  L  H  L  F  L  C  T  S :   G  H  L  I  R  S  N  D  W  S  F  D  R  A  G  D  R  K  W  I  C  *  R  C  C  S  W  C  H  I  W  C  C  F  L  S  *  S  L  *  I  I  S  I  T  M  A  V  *  *  I  W  Y  W  L  S  S  L  L   : D  *  C  N  R  E  P  I  K  W  *  T  S  S  *  A  D  W  S  C  N  A  K  C  S  T  E  S   : D  G  S  H  *  I  C  V  *  R  V  P  *  H  F  R  C  R  W  G  K  G  F  T  W  R  F  C  *  K  D  T  *  D  C  N  Y  *  *  *  *  C  G  *  F  G  R  E  S  L  L  F  S  L  P  T   : G  L  P  T  G  R  D  C  *  M  F  T  T  M  S  S  H  V  S  P  S  L  H  R  Y  M  A  V  E  A  W  I  L  S  T  V  Q  K  G  S  V  G  D  Y  T  L  *  I  I  M  W  L  F  Y  F  L  I  L  G  C  R  I  S  L  F  L  V  L  A  C  T  N  F  P  E  N  I  M  *  F  R  V  A  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27062" stop="26846"/>
                    <exon start="26474" stop="26296"/>
                    <exon start="26153" stop="26070"/>
                    <exon start="25990" stop="25823"/>
                    <exon start="25725" stop="25603"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQTPRFFSNPSSTYKKRMDFYAYPSRALPSSSSVSNFSIGDFVERVKYCFSFAVSTIVGNVFSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSLEVFESSLLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAIESAYDEFPNIFDVGGAKGLPGDSVEKIPKIVITNDNDVDDSGERVSCSVCLQDFQRGETARCLPQCHHMFHLPCIDTWLLRHGSCPLCRRDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27167" e_stop="26846"/>
            <exon e_start="26474" e_stop="26296"/>
            <exon e_start="26153" e_stop="26070"/>
            <exon e_start="25990" e_stop="25412"/>
            <exon e_start="25165" e_stop="25161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.811" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.867" e_score="0.950"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27167" e_stop="26846" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26845" i_stop="26475" i_length="371"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26474" e_stop="26296" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.811" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26295" i_stop="26154" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26153" e_stop="26070" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="26069" i_stop="25991" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.950">
            <gDNA_exon_boundary e_start="25990" e_stop="25412" e_length="579"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.867">
            <gDNA_intron_boundary i_start="25411" i_stop="25166" i_length="246"/>
          </intron>
          <exon e_serial="5" e_score="0.600">
            <gDNA_exon_boundary e_start="25165" e_stop="25161" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27167" stop="26846"/>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27154" stop="26846"/>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27076" stop="26846"/>
              <exon start="26474" stop="26326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26875" stop="26846"/>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26070"/>
              <exon start="25990" stop="25917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26865" stop="26846"/>
              <exon start="26474" stop="26296"/>
              <exon start="26153" stop="26070"/>
              <exon start="25990" stop="25941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26142" stop="26070"/>
              <exon start="25990" stop="25412"/>
              <exon start="25165" stop="25161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25928" stop="25589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACCTTCTTCTCTTTGCCTACTCTTATATATACATCGCTACTTTCAAAAAAAACACATATATATTTGCTGCTTTCTTGGAGCCCCAGAATCTTTATACTAATAAGGACAAACCCCAAGATTTTTCTCGAATCCATCATCGACCTACAAAAAAAGAATGGACTTTTATGCATACCCATCTCGTGCTTTGCCTTCATCATCCTCTGTTTCTAATTTTTCAATCGGAGATTTCGTTGAAAGGGTTAAATATTGTTTTAGCTTTGCCGTATCTACGATCGTCGGCAATGTATTCTCTGCAATCTTCACCTTTTTCTTTGCACTAG : TGGGCACCTTATTAGGAGCAATGACTGGAGCTTTGATAGGGCAGGAGACAGAAAGTGGATTTGTTAGAGGTGCTGCAGTTGGTGCCATATCTGGTGCTGTTTTCTCTCTTGAAGTCTTTGAATCATCTCTATTACTATGGCAGTCTGATGAATCTGGTATTGGTTGTCTTCTTTACTTG : ATTGATGTAATCGCGAGCCTATTAAGTGGTAGACTAGTTCGTGAGCGGATTGGTCCTGCAATGCTAAGTGCAGTACAGAGTCAG : ATGGGAGCCATTGAATCTGCGTATGACGAGTTCCCTAACATTTTCGATGTAGGTGGGGCAAAGGGTTTACCTGGAGATTCTGTTGAAAAGATACCTAAGATTGTAATTACTAATGATAATGATGTGGATGATTCGGGAGAGAGAGTCTCCTGTTCAGTCTGCCTACAGGTAAGACACATTTATACATTTTCTTTTGTTATTCTATTGTCTGTTTTTGAATTACTTAATTGGTTCTGAACGCTGTTCTCGGTTTCTATCTTTCTAGGACTTCCAACGGGGAGAGACTGCTAGATGTTTACCACAATGTCATCACATGTTTCACCTTCCTTGCATCGATACATGGCTGTTGAGGCATGGATCTTGTCCACTGTGCAGAAGGGATCTGTAGGTGATTATACTCTGTAAATTATAATGTGGTTATTTTATTTCCTCATACTTGGCTGTAGGATTTCTCTATTTCTTGTCCTCGCTTGTACCAATTTTCCTGAAAATATAATGTAATTTAGAGTTGCGCTCCTTTGAGCTTTGATCGTTGTAGTTGTTTACCACTATGTATAGAATTTTGAGCAATTTTAGTGT : ATAAG</gDNA_template>
            <first_frame> T  P  S  S  L  C  L  L  L  Y  I  H  R  Y  F  Q  K  K  H  I  Y  I  C  C  F  L  G  A  P  E  S  L  Y  *  *  G  Q  T  P  R  F  F  S  N  P  S  S  T  Y  K  K  R  M  D  F  Y  A  Y  P  S  R  A  L  P  S  S  S  S  V  S  N  F  S  I  G  D  F  V  E  R  V  K  Y  C  F  S  F  A  V  S  T  I  V  G  N  V  F  S  A  I  F  T  F  F  F  A  L   : V  G  T  L  L  G  A  M  T  G  A  L  I  G  Q  E  T  E  S  G  F  V  R  G  A  A  V  G  A  I  S  G  A  V  F  S  L  E  V  F  E  S  S  L  L  L  W  Q  S  D  E  S  G  I  G  C  L  L  Y  L  :  I  D  V  I  A  S  L  L  S  G  R  L  V  R  E  R  I  G  P  A  M  L  S  A  V  Q  S  Q  :  M  G  A  I  E  S  A  Y  D  E  F  P  N  I  F  D  V  G  G  A  K  G  L  P  G  D  S  V  E  K  I  P  K  I  V  I  T  N  D  N  D  V  D  D  S  G  E  R  V  S  C  S  V  C  L  Q  V  R  H  I  Y  T  F  S  F  V  I  L  L  S  V  F  E  L  L  N  W  F  *  T  L  F  S  V  S  I  F  L  G  L  P  T  G  R  D  C  *  M  F  T  T  M  S  S  H  V  S  P  S  L  H  R  Y  M  A  V  E  A  W  I  L  S  T  V  Q  K  G  S  V  G  D  Y  T  L  *  I  I  M  W  L  F  Y  F  L  I  L  G  C  R  I  S  L  F  L  V  L  A  C  T  N  F  P  E  N  I  M  *  F  R  V  A  L  L  *  A  L  I  V  V  V  V  Y  H  Y  V  *  N  F  E  Q  F  *  C  :  I   </first_frame>
            <second_frame>  H  L  L  L  F  A  Y  S  Y  I  Y  I  A  T  F  K  K  N  T  Y  I  F  A  A  F  L  E  P  Q  N  L  Y  T  N  K  D  K  P  Q  D  F  S  R  I  H  H  R  P  T  K  K  E  W  T  F  M  H  T  H  L  V  L  C  L  H  H  P  L  F  L  I  F  Q  S  E  I  S  L  K  G  L  N  I  V  L  A  L  P  Y  L  R  S  S  A  M  Y  S  L  Q  S  S  P  F  S  L  H  *  :  W  A  P  Y  *  E  Q  *  L  E  L  *  *  G  R  R  Q  K  V  D  L  L  E  V  L  Q  L  V  P  Y  L  V  L  F  S  L  L  K  S  L  N  H  L  Y  Y  Y  G  S  L  M  N  L  V  L  V  V  F  F  T  * :   L  M  *  S  R  A  Y  *  V  V  D  *  F  V  S  G  L  V  L  Q  C  *  V  Q  Y  R  V  R :   W  E  P  L  N  L  R  M  T  S  S  L  T  F  S  M  *  V  G  Q  R  V  Y  L  E  I  L  L  K  R  Y  L  R  L  *  L  L  M  I  M  M  W  M  I  R  E  R  E  S  P  V  Q  S  A  Y  R  *  D  T  F  I  H  F  L  L  L  F  Y  C  L  F  L  N  Y  L  I  G  S  E  R  C  S  R  F  L  S  F  *  D  F  Q  R  G  E  T  A  R  C  L  P  Q  C  H  H  M  F  H  L  P  C  I  D  T  W  L  L  R  H  G  S  C  P  L  C  R  R  D  L  *  V  I  I  L  C  K  L  *  C  G  Y  F  I  S  S  Y  L  A  V  G  F  L  Y  F  L  S  S  L  V  P  I  F  L  K  I  *  C  N  L  E  L  R  S  F  E  L  *  S  L  *  L  F  T  T  M  Y  R  I  L  S  N  F  S  V :   *  </second_frame>
            <third_frame>   T  F  F  S  L  P  T  L  I  Y  T  S  L  L  S  K  K  T  H  I  Y  L  L  L  S  W  S  P  R  I  F  I  L  I  R  T  N  P  K  I  F  L  E  S  I  I  D  L  Q  K  K  N  G  L  L  C  I  P  I  S  C  F  A  F  I  I  L  C  F  *  F  F  N  R  R  F  R  *  K  G  *  I  L  F  *  L  C  R  I  Y  D  R  R  Q  C  I  L  C  N  L  H  L  F  L  C  T  S :   G  H  L  I  R  S  N  D  W  S  F  D  R  A  G  D  R  K  W  I  C  *  R  C  C  S  W  C  H  I  W  C  C  F  L  S  *  S  L  *  I  I  S  I  T  M  A  V  *  *  I  W  Y  W  L  S  S  L  L   : D  *  C  N  R  E  P  I  K  W  *  T  S  S  *  A  D  W  S  C  N  A  K  C  S  T  E  S   : D  G  S  H  *  I  C  V  *  R  V  P  *  H  F  R  C  R  W  G  K  G  F  T  W  R  F  C  *  K  D  T  *  D  C  N  Y  *  *  *  *  C  G  *  F  G  R  E  S  L  L  F  S  L  P  T  G  K  T  H  L  Y  I  F  F  C  Y  S  I  V  C  F  *  I  T  *  L  V  L  N  A  V  L  G  F  Y  L  S  R  T  S  N  G  E  R  L  L  D  V  Y  H  N  V  I  T  C  F  T  F  L  A  S  I  H  G  C  *  G  M  D  L  V  H  C  A  E  G  I  C  R  *  L  Y  S  V  N  Y  N  V  V  I  L  F  P  H  T  W  L  *  D  F  S  I  S  C  P  R  L  Y  Q  F  S  *  K  Y  N  V  I  *  S  C  A  P  L  S  F  D  R  C  S  C  L  P  L  C  I  E  F  *  A  I  L  V   : Y  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27062" stop="26846"/>
                    <exon start="26474" stop="26296"/>
                    <exon start="26153" stop="26070"/>
                    <exon start="25990" stop="25754"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQTPRFFSNPSSTYKKRMDFYAYPSRALPSSSSVSNFSIGDFVERVKYCFSFAVSTIVGNVFSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSLEVFESSLLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAIESAYDEFPNIFDVGGAKGLPGDSVEKIPKIVITNDNDVDDSGERVSCSVCLQVRHIYTFSFVILLSVFELLNWF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="38841" PGL_stop="35087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38841" e_stop="38527"/>
            <exon e_start="38435" e_stop="38348"/>
            <exon e_start="37921" e_stop="37824"/>
            <exon e_start="37696" e_stop="37599"/>
            <exon e_start="36487" e_stop="36358"/>
            <exon e_start="36276" e_stop="35566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38841" e_stop="38527" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="38526" i_stop="38436" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38435" e_stop="38348" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.992">
            <gDNA_intron_boundary i_start="38347" i_stop="37922" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37921" e_stop="37824" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.040">
            <gDNA_intron_boundary i_start="37823" i_stop="37697" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37696" e_stop="37599" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="37598" i_stop="36488" i_length="1111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36487" e_stop="36358" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36357" i_stop="36277" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.938">
            <gDNA_exon_boundary e_start="36276" e_stop="35566" e_length="711"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38841" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38809" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37599"/>
              <exon start="36487" stop="36418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38805" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37599"/>
              <exon start="36487" stop="36358"/>
              <exon start="36276" stop="36193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38797" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37599"/>
              <exon start="36487" stop="36358"/>
              <exon start="36276" stop="36176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38788" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37599"/>
              <exon start="36487" stop="36358"/>
              <exon start="36276" stop="36096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38774" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38749" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36193" stop="35566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36193" stop="35649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36101" stop="35650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484400" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG : ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG : TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG : AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG : AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT : GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATGGTGAGTAATCTGCATACAAGCAGATACGGATAATGGGTGCTGAACATTGAGAACTTGATTATTGATTACTGACATCCATCTTCTAGCTCACAAAGTTTTAATTGCTATATTGTATTCTGGAGTAATGAGCAATGTTTATTTGATTGGCAACTAAGTAGTATTACGTATGTCTTGTTTTAGGTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAGGTAAACATTTTCGCCTGAGTGGTATTTAATACACAAAAAATATGTGCACCCTCTGCAGTTTTCTTATATGTACACAACTTGTTTTATTTGCTAGTACTTTGCATTTATGTTGATAAATCTTGCTGTAGCTTCTCGGCGGTCTCTTTTTTTTAACTCTTCCCACATTTTTCCATTTGGTTTGGTGTTTTAGTATTGATCCTTGAGACCCATAAGCTTAGTACTAAGTCCTTGAAATAAACAATTAGTGTATTTTTTT</gDNA_template>
            <first_frame> I  S  Q  N  F  K  T  H  C  F  H  F  F  A  E  L  H  *  L  I  K  V  V  D  *  I  F  K  Y  S  K  I  L  Q  I  S  S  W  S  L  S  S  N  G  S  E  R  K  A  F  S  I  G  A  S  K  I  V  E  F  Y  T  N  L  W  W  D  Y  C  V  V  I  F  R  S  H  S  S  C  F  P  N  Y  L  L  S  Q  G  L  S  E  S  T  R  S  H  L  Y  S  P  Q  Y  S  S  K  :  T  R  *  *  R  R  W  K  N  *  S  V  G  *  S  D  F  F  G  T  K  S  L  R  V  P  *  L  L   : V  Q  G  G  M  *  V  S  D  *  S  C  Q  A  S  H  A  K  V  K  C  R  R  *  F  Y  W  Q  E  Y  G  Q  Q  :  S  P  N  Q  F  R  N  I  S  C  K  R  A  *  *  G  D  Q  G  Y  *  E  K  D  C  R  F  H  L  H  T  S  R :   A  W  *  R  S  S  N  S  P  L  R  S  G  A  K  V  *  A  P  L  R  L  L  S  *  *  V  *  H  *  K  W  G  S  T  H  C  D  G  F  N  V  L  :  V  R  C  *  *  R  G  R  N  S  I  P  S  C  K  G  K  L  *  C  S  P  L  V  E  *  T  I  C  M  W  K  R  W  T  L  C  K  T  K  D  G  *  R  I  A  F  L  E  H  E  A  *  C  S  S  R  S  I  K  F  A  W  *  V  I  C  I  Q  A  D  T  D  N  G  C  *  T  L  R  T  *  L  L  I  T  D  I  H  L  L  A  H  K  V  L  I  A  I  L  Y  S  G  V  M  S  N  V  Y  L  I  G  N  *  V  V  L  R  M  S  C  F  R  W  V  P  C  N  *  R  *  Q  M  V  I  Y  K  M  D  A  R  P  *  I  Q  G  L  T  Y  C  *  R  *  T  F  S  P  E  W  Y  L  I  H  K  K  Y  V  H  P  L  Q  F  S  Y  M  Y  T  T  C  F  I  C  *  Y  F  A  F  M  L  I  N  L  A  V  A  S  R  R  S  L  F  F  N  S  S  H  I  F  P  F  G  L  V  F  *  Y  *  S  L  R  P  I  S  L  V  L  S  P  *  N  K  Q  L  V  Y  F  F </first_frame>
            <second_frame>  L  V  K  I  L  K  P  T  V  S  I  S  L  P  S  C  I  S  *  S  K  L  *  I  R  S  S  N  I  Q  R  F  C  R  F  H  R  G  V  *  V  A  M  A  V  K  G  R  H  S  R  L  G  P  R  K  S  S  N  S  T  L  I  F  G  G  I  I  V  L  S  F  F  A  L  I  L  L  A  F  R  I  I  S  F  H  R  G  S  Q  K  A  H  D  L  T  S  I  A  H  N  T  V  Q  R :   Q  D  D  D  D  D  G  K  T  D  Q  W  V  E  V  I  S  S  E  P  R  A  Y  V  Y  H  N  F  L  :  S  K  E  E  C  E  Y  L  I  S  L  A  K  P  H  M  Q  K  S  S  V  V  D  S  S  T  G  K  S  M  D  S  R :   V  R  T  S  S  G  T  F  L  A  R  G  R  D  K  V  I  R  D  I  E  K  R  I  A  D  F  T  F  I  P  V   : E  H  G  E  G  L  Q  I  L  H  Y  E  V  G  Q  K  Y  E  P  H  Y  D  Y  F  L  D  E  F  N  T  K  N  G  G  Q  R  I  A  T  V  L  M  Y  L :   S  D  V  D  E  G  G  E  T  V  F  P  A  A  K  G  N  Y  S  A  V  P  W  W  N  E  L  S  V  C  G  K  G  G  L  S  V  K  P  K  M  G  D  A  L  L  F  W  S  M  K  P  D  A  V  L  D  P  S  S  L  H  G  E  *  S  A  Y  K  Q  I  R  I  M  G  A  E  H  *  E  L  D  Y  *  L  L  T  S  I  F  *  L  T  K  F  *  L  L  Y  C  I  L  E  *  *  A  M  F  I  *  L  A  T  K  *  Y  Y  V  C  L  V  L  G  G  C  P  V  I  K  G  N  K  W  S  S  T  K  W  M  R  V  H  E  Y  K  A  *  P  T  A  R  G  K  H  F  R  L  S  G  I  *  Y  T  K  N  M  C  T  L  C  S  F  L  I  C  T  Q  L  V  L  F  A  S  T  L  H  L  C  *  *  I  L  L  *  L  L  G  G  L  F  F  L  T  L  P  T  F  F  H  L  V  W  C  F  S  I  D  P  *  D  P  *  A  *  Y  *  V  L  E  I  N  N  *  C  I  F   </second_frame>
            <third_frame>   *  S  K  F  *  N  P  L  F  P  F  L  C  R  V  A  L  A  D  Q  S  C  R  L  D  L  Q  I  F  K  D  F  A  D  F  I  V  E  F  E  *  Q  W  Q  *  K  E  G  I  L  D  W  G  L  E  N  R  R  I  L  H  *  S  L  V  G  L  L  C  C  H  F  S  L  S  F  F  L  L  S  E  L  S  P  F  T  G  A  L  R  K  H  T  I  S  P  L  *  P  T  I  Q  F  K   : D  K  M  M  T  T  M  E  K  L  I  S  G  L  K  *  F  L  R  N  Q  E  P  T  C  T  I  T  S  C :   P  R  R  N  V  S  I  *  L  V  L  P  S  L  T  C  K  S  Q  V  S  *  I  V  L  L  A  R  V  W  T  A   : E  S  E  P  V  P  E  H  F  L  Q  E  G  V  I  R  *  S  G  I  L  R  K  G  L  Q  I  S  P  S  Y  Q  *  :  S  M  V  K  V  F  K  F  S  T  T  K  W  G  K  S  M  S  P  T  T  I  T  F  L  M  S  L  T  L  K  M  G  V  N  A  L  R  R  F  *  C  T   : C  Q  M  L  M  K  G  A  K  Q  Y  S  Q  L  Q  R  E  I  I  V  Q  S  L  G  G  M  N  Y  L  Y  V  E  K  V  D  S  L  *  N  Q  R  W  V  T  H  C  F  S  G  A  *  S  L  M  Q  F  *  I  H  Q  V  C  M  V  S  N  L  H  T  S  R  Y  G  *  W  V  L  N  I  E  N  L  I  I  D  Y  *  H  P  S  S  S  S  Q  S  F  N  C  Y  I  V  F  W  S  N  E  Q  C  L  F  D  W  Q  L  S  S  I  T  Y  V  L  F  *  V  G  A  L  *  L  K  V  T  N  G  H  L  Q  N  G  C  A  S  M  N  T  R  L  N  L  L  L  E  V  N  I  F  A  *  V  V  F  N  T  Q  K  I  C  A  P  S  A  V  F  L  Y  V  H  N  L  F  Y  L  L  V  L  C  I  Y  V  D  K  S  C  C  S  F  S  A  V  S  F  F  *  L  F  P  H  F  S  I  W  F  G  V  L  V  L  I  L  E  T  H  K  L  S  T  K  S  L  K  *  T  I  S  V  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38720" stop="38527"/>
                    <exon start="38435" stop="38348"/>
                    <exon start="37921" stop="37824"/>
                    <exon start="37696" stop="37599"/>
                    <exon start="36487" stop="36358"/>
                    <exon start="36276" stop="36081"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAMAVKGRHSRLGPRKSSNSTLIFGGIIVLSFFALILLAFRIISFHRGSQKAHDLTSIAHNTVQRQDDDDDGKTDQWVEVISSEPRAYVYHNFLSKEECEYLISLAKPHMQKSSVVDSSTGKSMDSRVRTSSGTFLARGRDKVIRDIEKRIADFTFIPVEHGEGLQILHYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVDEGGETVFPAAKGNYSAVPWWNELSVCGKGGLSVKPKMGDALLFWSMKPDAVLDPSSLHGE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38841" e_stop="38527"/>
            <exon e_start="38435" e_stop="38348"/>
            <exon e_start="37921" e_stop="37824"/>
            <exon e_start="37696" e_stop="37599"/>
            <exon e_start="36487" e_stop="36358"/>
            <exon e_start="36276" e_stop="36089"/>
            <exon e_start="35908" e_stop="35822"/>
            <exon e_start="35289" e_stop="35087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.170" acc_prob="0.965" e_score="0.995"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.989"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38841" e_stop="38527" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="38526" i_stop="38436" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38435" e_stop="38348" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.992">
            <gDNA_intron_boundary i_start="38347" i_stop="37922" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37921" e_stop="37824" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.040">
            <gDNA_intron_boundary i_start="37823" i_stop="37697" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37696" e_stop="37599" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="37598" i_stop="36488" i_length="1111"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36487" e_stop="36358" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36357" i_stop="36277" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="36276" e_stop="36089" e_length="188"/>
          </exon>
          <intron i_serial="6" don_prob="0.170" acc_prob="0.965">
            <gDNA_intron_boundary i_start="36088" i_stop="35909" i_length="180"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="35908" e_stop="35822" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35821" i_stop="35290" i_length="532"/>
          </intron>
          <exon e_serial="8" e_score="0.941">
            <gDNA_exon_boundary e_start="35289" e_stop="35087" e_length="203"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38841" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38809" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37599"/>
              <exon start="36487" stop="36418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38805" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37599"/>
              <exon start="36487" stop="36358"/>
              <exon start="36276" stop="36193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38797" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37599"/>
              <exon start="36487" stop="36358"/>
              <exon start="36276" stop="36176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38788" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37599"/>
              <exon start="36487" stop="36358"/>
              <exon start="36276" stop="36096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38774" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38749" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37599"/>
              <exon start="36487" stop="36358"/>
              <exon start="36276" stop="36089"/>
              <exon start="35908" stop="35822"/>
              <exon start="35289" stop="35087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36188" stop="36089"/>
              <exon start="35908" stop="35822"/>
              <exon start="35289" stop="35106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG : ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG : TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG : AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG : AGCATGGTGAAGGTCTTCAAATTCTCCACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT : GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG : GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG : GTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAGATGTGAGAAGCTTCATTCG</gDNA_template>
            <first_frame> I  S  Q  N  F  K  T  H  C  F  H  F  F  A  E  L  H  *  L  I  K  V  V  D  *  I  F  K  Y  S  K  I  L  Q  I  S  S  W  S  L  S  S  N  G  S  E  R  K  A  F  S  I  G  A  S  K  I  V  E  F  Y  T  N  L  W  W  D  Y  C  V  V  I  F  R  S  H  S  S  C  F  P  N  Y  L  L  S  Q  G  L  S  E  S  T  R  S  H  L  Y  S  P  Q  Y  S  S  K  :  T  R  *  *  R  R  W  K  N  *  S  V  G  *  S  D  F  F  G  T  K  S  L  R  V  P  *  L  L   : V  Q  G  G  M  *  V  S  D  *  S  C  Q  A  S  H  A  K  V  K  C  R  R  *  F  Y  W  Q  E  Y  G  Q  Q  :  S  P  N  Q  F  R  N  I  S  C  K  R  A  *  *  G  D  Q  G  Y  *  E  K  D  C  R  F  H  L  H  T  S  R :   A  W  *  R  S  S  N  S  P  L  R  S  G  A  K  V  *  A  P  L  R  L  L  S  *  *  V  *  H  *  K  W  G  S  T  H  C  D  G  F  N  V  L  :  V  R  C  *  *  R  G  R  N  S  I  P  S  C  K  G  K  L  *  C  S  P  L  V  E  *  T  I  C  M  W  K  R  W  T  L  C  K  T  K  D  G  *  R  I  A  F  L  E  H  E  A  *  C  S  S  R  S  I  K  F  A  W :   W  V  P  C  N  *  R  *  Q  M  V  I  Y  K  M  D  A  R  P  *  I  Q  G  L  T  Y  C  *  R :   S  V  L  S  L  D  A  V  T  V  V  P  F  V  S  K  G  G  *  S  *  I  E  P  P  H  M  K  L  Q  F  Y  F  D  S  T  H  S  Q  H  S  C  S  F  L  F  C  K  I  V  F  S  S  V  G  L  I  G  A  I  K  M  *  E  A  S  F  </first_frame>
            <second_frame>  L  V  K  I  L  K  P  T  V  S  I  S  L  P  S  C  I  S  *  S  K  L  *  I  R  S  S  N  I  Q  R  F  C  R  F  H  R  G  V  *  V  A  M  A  V  K  G  R  H  S  R  L  G  P  R  K  S  S  N  S  T  L  I  F  G  G  I  I  V  L  S  F  F  A  L  I  L  L  A  F  R  I  I  S  F  H  R  G  S  Q  K  A  H  D  L  T  S  I  A  H  N  T  V  Q  R :   Q  D  D  D  D  D  G  K  T  D  Q  W  V  E  V  I  S  S  E  P  R  A  Y  V  Y  H  N  F  L  :  S  K  E  E  C  E  Y  L  I  S  L  A  K  P  H  M  Q  K  S  S  V  V  D  S  S  T  G  K  S  M  D  S  R :   V  R  T  S  S  G  T  F  L  A  R  G  R  D  K  V  I  R  D  I  E  K  R  I  A  D  F  T  F  I  P  V   : E  H  G  E  G  L  Q  I  L  H  Y  E  V  G  Q  K  Y  E  P  H  Y  D  Y  F  L  D  E  F  N  T  K  N  G  G  Q  R  I  A  T  V  L  M  Y  L :   S  D  V  D  E  G  G  E  T  V  F  P  A  A  K  G  N  Y  S  A  V  P  W  W  N  E  L  S  V  C  G  K  G  G  L  S  V  K  P  K  M  G  D  A  L  L  F  W  S  M  K  P  D  A  V  L  D  P  S  S  L  H   : G  G  C  P  V  I  K  G  N  K  W  S  S  T  K  W  M  R  V  H  E  Y  K  A  *  P  T  A  R   : G  Q  F  *  V  W  M  Q  S  L  L  C  H  L  Y  Q  K  G  D  S  L  E  *  S  H  H  T  *  S  F  N  F  T  L  I  V  L  I  L  N  I  L  V  P  F  F  S  V  K  L  C  F  H  L  W  V  *  L  E  Q  *  R  C  E  K  L  H  S </second_frame>
            <third_frame>   *  S  K  F  *  N  P  L  F  P  F  L  C  R  V  A  L  A  D  Q  S  C  R  L  D  L  Q  I  F  K  D  F  A  D  F  I  V  E  F  E  *  Q  W  Q  *  K  E  G  I  L  D  W  G  L  E  N  R  R  I  L  H  *  S  L  V  G  L  L  C  C  H  F  S  L  S  F  F  L  L  S  E  L  S  P  F  T  G  A  L  R  K  H  T  I  S  P  L  *  P  T  I  Q  F  K   : D  K  M  M  T  T  M  E  K  L  I  S  G  L  K  *  F  L  R  N  Q  E  P  T  C  T  I  T  S  C :   P  R  R  N  V  S  I  *  L  V  L  P  S  L  T  C  K  S  Q  V  S  *  I  V  L  L  A  R  V  W  T  A   : E  S  E  P  V  P  E  H  F  L  Q  E  G  V  I  R  *  S  G  I  L  R  K  G  L  Q  I  S  P  S  Y  Q  *  :  S  M  V  K  V  F  K  F  S  T  T  K  W  G  K  S  M  S  P  T  T  I  T  F  L  M  S  L  T  L  K  M  G  V  N  A  L  R  R  F  *  C  T   : C  Q  M  L  M  K  G  A  K  Q  Y  S  Q  L  Q  R  E  I  I  V  Q  S  L  G  G  M  N  Y  L  Y  V  E  K  V  D  S  L  *  N  Q  R  W  V  T  H  C  F  S  G  A  *  S  L  M  Q  F  *  I  H  Q  V  C  M  :  V  G  A  L  *  L  K  V  T  N  G  H  L  Q  N  G  C  A  S  M  N  T  R  L  N  L  L  L  E  :  V  S  F  E  F  G  C  S  H  C  C  A  I  C  I  K  R  G  I  V  L  N  R  A  T  T  H  E  A  S  I  L  L  *  *  Y  S  F  S  T  F  L  F  L  S  F  L  *  N  C  V  F  I  C  G  F  N  W  S  N  K  D  V  R  S  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38720" stop="38527"/>
                    <exon start="38435" stop="38348"/>
                    <exon start="37921" stop="37824"/>
                    <exon start="37696" stop="37599"/>
                    <exon start="36487" stop="36358"/>
                    <exon start="36276" stop="36089"/>
                    <exon start="35908" stop="35835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAMAVKGRHSRLGPRKSSNSTLIFGGIIVLSFFALILLAFRIISFHRGSQKAHDLTSIAHNTVQRQDDDDDGKTDQWVEVISSEPRAYVYHNFLSKEECEYLISLAKPHMQKSSVVDSSTGKSMDSRVRTSSGTFLARGRDKVIRDIEKRIADFTFIPVEHGEGLQILHYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVDEGGETVFPAAKGNYSAVPWWNELSVCGKGGLSVKPKMGDALLFWSMKPDAVLDPSSLHGGCPVIKGNKWSSTKWMRVHEYKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="38841" e_stop="38527"/>
            <exon e_start="38435" e_stop="38348"/>
            <exon e_start="37921" e_stop="37824"/>
            <exon e_start="37696" e_stop="37599"/>
            <exon e_start="36460" e_stop="36358"/>
            <exon e_start="36276" e_stop="36089"/>
            <exon e_start="35908" e_stop="35822"/>
            <exon e_start="35289" e_stop="35106"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.703" acc_prob="0.998" e_score="0.835"/>
          <exon-intron don_prob="0.170" acc_prob="0.965" e_score="0.995"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="0.989"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38841" e_stop="38527" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="38526" i_stop="38436" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38435" e_stop="38348" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.992">
            <gDNA_intron_boundary i_start="38347" i_stop="37922" i_length="426"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37921" e_stop="37824" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.040">
            <gDNA_intron_boundary i_start="37823" i_stop="37697" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37696" e_stop="37599" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37598" i_stop="36461" i_length="1138"/>
          </intron>
          <exon e_serial="5" e_score="0.835">
            <gDNA_exon_boundary e_start="36460" e_stop="36358" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.703" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36357" i_stop="36277" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="36276" e_stop="36089" e_length="188"/>
          </exon>
          <intron i_serial="6" don_prob="0.170" acc_prob="0.965">
            <gDNA_intron_boundary i_start="36088" i_stop="35909" i_length="180"/>
          </intron>
          <exon e_serial="7" e_score="0.989">
            <gDNA_exon_boundary e_start="35908" e_stop="35822" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35821" i_stop="35290" i_length="532"/>
          </intron>
          <exon e_serial="8" e_score="0.929">
            <gDNA_exon_boundary e_start="35289" e_stop="35106" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38841" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38774" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38749" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38715" stop="38527"/>
              <exon start="38435" stop="38348"/>
              <exon start="37921" stop="37824"/>
              <exon start="37696" stop="37599"/>
              <exon start="36460" stop="36358"/>
              <exon start="36276" stop="36089"/>
              <exon start="35908" stop="35898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36188" stop="36089"/>
              <exon start="35908" stop="35822"/>
              <exon start="35289" stop="35106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTAGTCAAAATTTTAAAACCCACTGTTTCCATTTCTTTGCCGAGTTGCATTAGCTGATCAAAGTTGTAGATTAGATCTTCAAATATTCAAAGATTTTGCAGATTTCATCGTGGAGTTTGAGTAGCAATGGCAGTGAAAGGAAGGCATTCTCGATTGGGGCCTCGAAAATCGTCGAATTCTACACTAATCTTTGGTGGGATTATTGTGTTGTCATTTTTCGCTCTCATTCTTCTTGCTTTCCGAATTATCTCCTTTCACAGGGGCTCTCAGAAAGCACACGATCTCACCTCTATAGCCCACAATACAGTTCAAAG : ACAAGATGATGACGACGATGGAAAAACTGATCAGTGGGTTGAAGTGATTTCTTCGGAACCAAGAGCCTACGTGTACCATAACTTCTTG : TCCAAGGAGGAATGTGAGTATCTGATTAGTCTTGCCAAGCCTCACATGCAAAAGTCAAGTGTCGTAGATAGTTCTACTGGCAAGAGTATGGACAGCAG : AGTCCGAACCAGTTCCGGAACATTTCTTGCAAGAGGGCGTGATAAGGTGATCAGGGATATTGAGAAAAGGATTGCAGATTTCACCTTCATACCAGTAG : ACTACGAAGTGGGGCAAAAGTATGAGCCCCACTACGATTACTTTCTTGATGAGTTTAACACTAAAAATGGGGGTCAACGCATTGCGACGGTTTTAATGTACTT : GTCAGATGTTGATGAAGGGGGCGAAACAGTATTCCCAGCTGCAAAGGGAAATTATAGTGCAGTCCCTTGGTGGAATGAACTATCTGTATGTGGAAAAGGTGGACTCTCTGTAAAACCAAAGATGGGTGACGCATTGCTTTTCTGGAGCATGAAGCCTGATGCAGTTCTAGATCCATCAAGTTTGCATG : GTGGGTGCCCTGTAATTAAAGGTAACAAATGGTCATCTACAAAATGGATGCGCGTCCATGAATACAAGGCTTAACCTACTGCTAGAG : GTCAGTTTTGAGTTTGGATGCAGTCACTGTTGTGCCATTTGTATCAAAAGGGGGATAGTCTTGAATAGAGCCACCACACATGAAGCTTCAATTTTACTTTGATAGTACTCATTCTCAACATTCTTGTTCCTTTCTTTTCTGTAAAATTGTGTTTTCATCTGTGGGTTTAATTGGAGCAATAAAG</gDNA_template>
            <first_frame> I  S  Q  N  F  K  T  H  C  F  H  F  F  A  E  L  H  *  L  I  K  V  V  D  *  I  F  K  Y  S  K  I  L  Q  I  S  S  W  S  L  S  S  N  G  S  E  R  K  A  F  S  I  G  A  S  K  I  V  E  F  Y  T  N  L  W  W  D  Y  C  V  V  I  F  R  S  H  S  S  C  F  P  N  Y  L  L  S  Q  G  L  S  E  S  T  R  S  H  L  Y  S  P  Q  Y  S  S  K  :  T  R  *  *  R  R  W  K  N  *  S  V  G  *  S  D  F  F  G  T  K  S  L  R  V  P  *  L  L   : V  Q  G  G  M  *  V  S  D  *  S  C  Q  A  S  H  A  K  V  K  C  R  R  *  F  Y  W  Q  E  Y  G  Q  Q  :  S  P  N  Q  F  R  N  I  S  C  K  R  A  *  *  G  D  Q  G  Y  *  E  K  D  C  R  F  H  L  H  T  S  R :   L  R  S  G  A  K  V  *  A  P  L  R  L  L  S  *  *  V  *  H  *  K  W  G  S  T  H  C  D  G  F  N  V  L  :  V  R  C  *  *  R  G  R  N  S  I  P  S  C  K  G  K  L  *  C  S  P  L  V  E  *  T  I  C  M  W  K  R  W  T  L  C  K  T  K  D  G  *  R  I  A  F  L  E  H  E  A  *  C  S  S  R  S  I  K  F  A  W :   W  V  P  C  N  *  R  *  Q  M  V  I  Y  K  M  D  A  R  P  *  I  Q  G  L  T  Y  C  *  R :   S  V  L  S  L  D  A  V  T  V  V  P  F  V  S  K  G  G  *  S  *  I  E  P  P  H  M  K  L  Q  F  Y  F  D  S  T  H  S  Q  H  S  C  S  F  L  F  C  K  I  V  F  S  S  V  G  L  I  G  A  I  K </first_frame>
            <second_frame>  L  V  K  I  L  K  P  T  V  S  I  S  L  P  S  C  I  S  *  S  K  L  *  I  R  S  S  N  I  Q  R  F  C  R  F  H  R  G  V  *  V  A  M  A  V  K  G  R  H  S  R  L  G  P  R  K  S  S  N  S  T  L  I  F  G  G  I  I  V  L  S  F  F  A  L  I  L  L  A  F  R  I  I  S  F  H  R  G  S  Q  K  A  H  D  L  T  S  I  A  H  N  T  V  Q  R :   Q  D  D  D  D  D  G  K  T  D  Q  W  V  E  V  I  S  S  E  P  R  A  Y  V  Y  H  N  F  L  :  S  K  E  E  C  E  Y  L  I  S  L  A  K  P  H  M  Q  K  S  S  V  V  D  S  S  T  G  K  S  M  D  S  R :   V  R  T  S  S  G  T  F  L  A  R  G  R  D  K  V  I  R  D  I  E  K  R  I  A  D  F  T  F  I  P  V   : D  Y  E  V  G  Q  K  Y  E  P  H  Y  D  Y  F  L  D  E  F  N  T  K  N  G  G  Q  R  I  A  T  V  L  M  Y  L :   S  D  V  D  E  G  G  E  T  V  F  P  A  A  K  G  N  Y  S  A  V  P  W  W  N  E  L  S  V  C  G  K  G  G  L  S  V  K  P  K  M  G  D  A  L  L  F  W  S  M  K  P  D  A  V  L  D  P  S  S  L  H   : G  G  C  P  V  I  K  G  N  K  W  S  S  T  K  W  M  R  V  H  E  Y  K  A  *  P  T  A  R   : G  Q  F  *  V  W  M  Q  S  L  L  C  H  L  Y  Q  K  G  D  S  L  E  *  S  H  H  T  *  S  F  N  F  T  L  I  V  L  I  L  N  I  L  V  P  F  F  S  V  K  L  C  F  H  L  W  V  *  L  E  Q  *   </second_frame>
            <third_frame>   *  S  K  F  *  N  P  L  F  P  F  L  C  R  V  A  L  A  D  Q  S  C  R  L  D  L  Q  I  F  K  D  F  A  D  F  I  V  E  F  E  *  Q  W  Q  *  K  E  G  I  L  D  W  G  L  E  N  R  R  I  L  H  *  S  L  V  G  L  L  C  C  H  F  S  L  S  F  F  L  L  S  E  L  S  P  F  T  G  A  L  R  K  H  T  I  S  P  L  *  P  T  I  Q  F  K   : D  K  M  M  T  T  M  E  K  L  I  S  G  L  K  *  F  L  R  N  Q  E  P  T  C  T  I  T  S  C :   P  R  R  N  V  S  I  *  L  V  L  P  S  L  T  C  K  S  Q  V  S  *  I  V  L  L  A  R  V  W  T  A   : E  S  E  P  V  P  E  H  F  L  Q  E  G  V  I  R  *  S  G  I  L  R  K  G  L  Q  I  S  P  S  Y  Q  *  :  T  T  K  W  G  K  S  M  S  P  T  T  I  T  F  L  M  S  L  T  L  K  M  G  V  N  A  L  R  R  F  *  C  T   : C  Q  M  L  M  K  G  A  K  Q  Y  S  Q  L  Q  R  E  I  I  V  Q  S  L  G  G  M  N  Y  L  Y  V  E  K  V  D  S  L  *  N  Q  R  W  V  T  H  C  F  S  G  A  *  S  L  M  Q  F  *  I  H  Q  V  C  M  :  V  G  A  L  *  L  K  V  T  N  G  H  L  Q  N  G  C  A  S  M  N  T  R  L  N  L  L  L  E  :  V  S  F  E  F  G  C  S  H  C  C  A  I  C  I  K  R  G  I  V  L  N  R  A  T  T  H  E  A  S  I  L  L  *  *  Y  S  F  S  T  F  L  F  L  S  F  L  *  N  C  V  F  I  C  G  F  N  W  S  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38720" stop="38527"/>
                    <exon start="38435" stop="38348"/>
                    <exon start="37921" stop="37824"/>
                    <exon start="37696" stop="37599"/>
                    <exon start="36460" stop="36358"/>
                    <exon start="36276" stop="36089"/>
                    <exon start="35908" stop="35835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAMAVKGRHSRLGPRKSSNSTLIFGGIIVLSFFALILLAFRIISFHRGSQKAHDLTSIAHNTVQRQDDDDDGKTDQWVEVISSEPRAYVYHNFLSKEECEYLISLAKPHMQKSSVVDSSTGKSMDSRVRTSSGTFLARGRDKVIRDIEKRIADFTFIPVDYEVGQKYEPHYDYFLDEFNTKNGGQRIATVLMYLSDVDEGGETVFPAAKGNYSAVPWWNELSVCGKGGLSVKPKMGDALLFWSMKPDAVLDPSSLHGGCPVIKGNKWSSTKWMRVHEYKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="43420" PGL_stop="40707"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42655" e_stop="42145"/>
            <exon e_start="41292" e_stop="41162"/>
            <exon e_start="41065" e_stop="40707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42655" e_stop="42145" e_length="511"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="42144" i_stop="41293" i_length="852"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41292" e_stop="41162" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41065" e_stop="40707" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42655" stop="42145"/>
              <exon start="41292" stop="41162"/>
              <exon start="41065" stop="40973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42652" stop="42205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42469" stop="42145"/>
              <exon start="41292" stop="41162"/>
              <exon start="41065" stop="40708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42396" stop="42145"/>
              <exon start="41292" stop="41162"/>
              <exon start="41065" stop="40716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42396" stop="42145"/>
              <exon start="41292" stop="41162"/>
              <exon start="41065" stop="40896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42395" stop="42145"/>
              <exon start="41292" stop="41162"/>
              <exon start="41065" stop="40763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42387" stop="42145"/>
              <exon start="41292" stop="41162"/>
              <exon start="41065" stop="40707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42301" stop="42145"/>
              <exon start="41292" stop="41162"/>
              <exon start="41065" stop="40716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41288" stop="41162"/>
              <exon start="41065" stop="40716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41263" stop="41162"/>
              <exon start="41065" stop="40723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG : GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCAT</gDNA_template>
            <first_frame> Q  V  S  A  I  S  A  A  *  F  S  V  I  C  *  L  Y  C  T  H  Q  T  C  K  S  S  N  I  *  S  Q  N  C  D  S  I  L  I  F  V  C  W  Y  G  A  L  F  *  L  *  P  T  S  L  K  S  V  P  T  E  R  S  Q  L  A  V  L  L  L  Q  L  *  Y  I  N  I  F  F  I  I  S  *  S  *  Y  P  A  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L   : G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C  R  Y  S   </first_frame>
            <second_frame>  K  Y  Q  Q  F  L  Q  H  S  F  L  L  F  A  D  S  I  V  H  I  K  P  V  S  P  P  T  S  S  P  K  I  V  I  L  S  *  F  L  F  V  G  M  V  H  C  S  D  S  D  Q  L  V  *  N  P  S  L  L  R  G  L  N  L  Q  S  C  C  C  N  C  S  T  *  I  Y  S  S  S  S  H  N  L  D  I  Q  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  :  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  D  T  P  </second_frame>
            <third_frame>   S  I  S  N  F  C  S  I  V  F  C  Y  L  L  T  L  L  Y  T  S  N  L  *  V  L  Q  H  L  V  P  K  L  *  F  Y  L  D  F  C  L  L  V  W  C  T  V  L  T  L  T  N  *  S  K  I  R  P  Y  *  E  V  S  T  C  S  P  V  V  A  T  V  V  H  K  Y  I  L  H  H  L  I  I  L  I  S  S  K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R :   R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  *  I  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42432" stop="42145"/>
                    <exon start="41292" stop="41162"/>
                    <exon start="41065" stop="40927"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYSSSSHNLDIQQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42679" e_stop="41162"/>
            <exon e_start="41065" e_stop="40716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="42679" e_stop="41162" e_length="1518"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41065" e_stop="40716" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42679" stop="41923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42678" stop="42078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42652" stop="42205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42288" stop="41799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42266" stop="41599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42148" stop="41478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41539" stop="41162"/>
              <exon start="41065" stop="40720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41288" stop="41162"/>
              <exon start="41065" stop="40716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41263" stop="41162"/>
              <exon start="41065" stop="40723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCTGTAAGTCCTCCAACATCTAGTCCCAAAATTGTGATTCTATCTTGATTTTTGTTTGTTGGTATGGTGCACTGTTCTGACTCTGACCAACTAGTCTAAAATCCGTCCCTACTGAGAGGTCTCAACTTGCAGTCCTGTTGTTGCAACTGTAGTACATAAATATATTCTTCATCATCTCATAATCTTGATATCCAGCAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</gDNA_template>
            <first_frame> V  F  K  G  I  C  L  D  Q  V  S  A  I  S  A  A  *  F  S  V  I  C  *  L  Y  C  T  H  Q  T  C  K  S  S  N  I  *  S  Q  N  C  D  S  I  L  I  F  V  C  W  Y  G  A  L  F  *  L  *  P  T  S  L  K  S  V  P  T  E  R  S  Q  L  A  V  L  L  L  Q  L  *  Y  I  N  I  F  F  I  I  S  *  S  *  Y  P  A  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L  G  E  V  F  K  S  I  Y  H  S  S  F  L  Y  I  D  E  S  C  H  V  Y  T  L  C  E  *  L  L  E  N  S  A  Y  *  I  A  S  F  L  I  L  I  H  V  L  F  A  I  N  L  L  I  K  H  S  K  W  E  I  C  Q  N  H  T  I  *  L  C  N  F  S  I  L  *  I  D  N  T  *  V  F  H  F  L  C  V  L  S  I  *  K  D  S  L  K  V  I  Y  S  A  E  R  A  N  N  N  S  *  L  M  D  N  Y  H  T  S  M  P  I  S  K  S  L  L  L  Y  I  H  G  P  Y  R  L  L  Y  K  D  D  *  K  N  V  L  D  E  D  P  L  L  F  S  V  S  L  *  I  *  Y  K  L  K  E  I  H  K  L  H  L  V  I  N  I  T  N  D  S  D  L  A  F  P  Y  L  T  A  N  L  *  K  L  *  R  L  I  W  N  L  Y  Y  *  R  L  I  A  G  Q  L  T  T  L  Y  F  A  L  *  S  T  T  G  N  *  C  T  N  S  I  P  S  P  D  R  *  G  E  I  L  I  F  L  E  D  T  L  *  S  V  M  F  D  C  E  K  A  *  K  K  M  M  I  P  L  L  *  *  L  I  W  I  P  L  F  R  I  N  L  L  T  Y  C  W  F  C  *  G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C   </first_frame>
            <second_frame>  F  S  K  A  S  V  *  I  K  Y  Q  Q  F  L  Q  H  S  F  L  L  F  A  D  S  I  V  H  I  K  P  V  S  P  P  T  S  S  P  K  I  V  I  L  S  *  F  L  F  V  G  M  V  H  C  S  D  S  D  Q  L  V  *  N  P  S  L  L  R  G  L  N  L  Q  S  C  C  C  N  C  S  T  *  I  Y  S  S  S  S  H  N  L  D  I  Q  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  V  K  F  S  N  Q  F  I  T  V  L  F  Y  I  *  M  N  H  V  M  Y  I  H  F  V  N  N  Y  W  K  I  V  H  I  K  L  H  L  S  L  S  *  S  M  S  C  L  P  *  I  F  *  *  S  I  V  S  G  R  S  V  K  I  T  Q  Y  D  S  A  T  F  P  Y  F  E  *  I  I  L  E  C  S  T  F  F  A  C  C  P  S  K  R  I  P  *  K  S  Y  I  Q  L  K  G  P  I  I  I  V  N  *  W  T  T  T  I  L  L  C  P  *  A  K  A  Y  Y  Y  I  Y  M  V  P  I  G  Y  Y  T  K  M  I  K  K  M  F  W  M  K  I  H  C  Y  F  L  S  H  Y  E  Y  N  I  S  *  K  R  F  I  S  C  T  W  *  *  I  *  Q  M  T  V  T  *  L  F  L  I  S  L  L  I  C  R  N  C  E  D  *  S  G  T  C  T  I  K  D  *  *  Q  V  N  *  Q  L  C  I  L  L  C  D  L  L  Q  G  T  D  V  Q  I  A  S  H  L  L  I  D  R  G  K  Y  L  F  F  S  R  I  P  C  E  V  *  C  L  I  V  R  K  H  R  K  K  *  *  F  H  Y  Y  S  S  *  F  G  F  H  Y  F  E  L  T  C  L  H  I  V  G  F  V  K  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  </second_frame>
            <third_frame>   F  Q  R  H  L  S  R  S  S  I  S  N  F  C  S  I  V  F  C  Y  L  L  T  L  L  Y  T  S  N  L  *  V  L  Q  H  L  V  P  K  L  *  F  Y  L  D  F  C  L  L  V  W  C  T  V  L  T  L  T  N  *  S  K  I  R  P  Y  *  E  V  S  T  C  S  P  V  V  A  T  V  V  H  K  Y  I  L  H  H  L  I  I  L  I  S  S  K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R  *  S  F  Q  I  N  L  S  Q  F  F  F  I  Y  R  *  I  M  S  C  I  Y  T  L  *  I  I  I  G  K  *  C  I  L  N  C  I  F  P  Y  P  D  P  C  P  V  C  H  K  S  F  D  K  A  *  *  V  G  D  L  S  K  S  H  N  M  T  L  Q  L  F  H  T  L  N  R  *  Y  L  S  V  P  L  S  L  R  V  V  H  L  K  G  F  L  K  S  H  I  F  S  *  K  G  Q  *  *  *  L  I  D  G  Q  L  P  Y  F  Y  A  H  K  Q  K  L  I  I  I  Y  T  W  S  L  *  A  T  I  Q  R  *  L  K  K  C  F  G  *  R  S  I  V  I  F  C  L  I  M  N  I  I  *  V  K  R  D  S  *  V  A  L  G  D  K  Y  N  K  *  Q  *  P  S  F  S  L  S  H  C  *  F  V  E  T  V  K  I  N  L  E  L  V  L  L  K  I  D  S  R  S  I  D  N  S  V  F  C  S  V  I  Y  Y  R  E  L  M  Y  K  *  H  P  I  S  *  S  I  G  G  N  T  Y  F  S  R  G  Y  L  V  K  C  D  V  *  L  *  E  S  I  E  K  N  D  D  S  I  I  I  V  V  D  L  D  S  I  I  S  N  *  L  A  Y  I  L  L  V  L  L  R  R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42432" stop="42100"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYSSSSHNLDIQQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSVKFSNQFITVLFYI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41346" stop="41162"/>
                    <exon start="41065" stop="40927"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGFHYFELTCLHIVGFVKAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="42702" e_stop="42589"/>
            <exon e_start="42396" e_stop="42145"/>
            <exon e_start="41292" e_stop="41162"/>
            <exon e_start="41065" e_stop="40707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42702" e_stop="42589" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.942">
            <gDNA_intron_boundary i_start="42588" i_stop="42397" i_length="192"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42396" e_stop="42145" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="42144" i_stop="41293" i_length="852"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41292" e_stop="41162" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41065" e_stop="40707" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42702" stop="42589"/>
              <exon start="42396" stop="42145"/>
              <exon start="41292" stop="41227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42396" stop="42145"/>
              <exon start="41292" stop="41162"/>
              <exon start="41065" stop="40716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42396" stop="42145"/>
              <exon start="41292" stop="41162"/>
              <exon start="41065" stop="40896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42395" stop="42145"/>
              <exon start="41292" stop="41162"/>
              <exon start="41065" stop="40763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42387" stop="42145"/>
              <exon start="41292" stop="41162"/>
              <exon start="41065" stop="40707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42301" stop="42145"/>
              <exon start="41292" stop="41162"/>
              <exon start="41065" stop="40716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41288" stop="41162"/>
              <exon start="41065" stop="40716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41263" stop="41162"/>
              <exon start="41065" stop="40723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGCATAAAGACTCCTTCACAGTTTTCAAAGGCATCTGTCTAGATCAAGTATCAGCAATTTCTGCAGCATAGTTTTCTGTTATTTGCTGACTCTATTGTACACATCAAACCT : CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCG : GCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAGATACTCCAT</gDNA_template>
            <first_frame> S  S  I  K  T  P  S  Q  F  S  K  A  S  V  *  I  K  Y  Q  Q  F  L  Q  H  S  F  L  L  F  A  D  S  I  V  H  I  K  P  :  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  :  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  D  T  P  </first_frame>
            <second_frame>  Q  A  *  R  L  L  H  S  F  Q  R  H  L  S  R  S  S  I  S  N  F  C  S  I  V  F  C  Y  L  L  T  L  L  Y  T  S  N  L :   K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R :   R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  *  I  L  H </second_frame>
            <third_frame>   K  H  K  D  S  F  T  V  F  K  G  I  C  L  D  Q  V  S  A  I  S  A  A  *  F  S  V  I  C  *  L  Y  C  T  H  Q  T   : S  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L   : G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C  R  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42657" stop="42589"/>
                    <exon start="42396" stop="42145"/>
                    <exon start="41292" stop="41162"/>
                    <exon start="41065" stop="40927"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKYQQFLQHSFLLFADSIVHIKPQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="43420" e_stop="43027"/>
            <exon e_start="42396" e_stop="41162"/>
            <exon e_start="41065" e_stop="40716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.720" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43420" e_stop="43027" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.720" acc_prob="0.942">
            <gDNA_intron_boundary i_start="43026" i_stop="42397" i_length="630"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42396" e_stop="41162" e_length="1235"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="41161" i_stop="41066" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41065" e_stop="40716" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43420" stop="43027"/>
              <exon start="42396" stop="41990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42288" stop="41799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42266" stop="41599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42148" stop="41478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41539" stop="41162"/>
              <exon start="41065" stop="40720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41288" stop="41162"/>
              <exon start="41065" stop="40716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41263" stop="41162"/>
              <exon start="41065" stop="40723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTACGCTACTCTGCGTTAAAATCAACCATGAGTGCGATCTTTATTGTTTTTAATCTCCCTTTCTTCCTCATCGACCCAATCTATGCACCAGTGTAATCTGAACCGTCATGATGAATATAGAAATTGTACCAGATAGGAGTTTTGACCGTAAAAATTGAGAATGTAGTTATCAAGAATCAGCCATTCCAATATTACTAGTTGAATTGTGGGATTATTTCAATCTAACACCGCGTAAGTAAGAATGTTTGGTGTTCATTTCTATGATTTCATTTCAGTGACTGCTCAAGGTTGGTTTTTGTAATTCTGGCAAGATGTGCTGACAACTTACTGTGTGAGAGGATGAGGATAAGATAAGATCTCGACAATTGAATAGAAGAAAATAATCTTTTCAG : CAAGAATCTGTTGAAATCATGAAGCAAAGGGAAGGCAAAAGTGTAGCTGATGGAAAAAAGTCAAAGAAGATCGCTCCAGCACCTCCACCACCACCACCAACGTCGAGGTTTCTTCTTAGCAGAAAAGTGACAACACCAAGCCATACCAAACAGGAGATTGCTAAGTATTGGAAGCAAAAGCGCAAGACTGAAGAAGACCACTTCCTTGATGCCATCAAGGCTGCAGCCAGAATCAGGGCGCGCAATCTCTCGGTGAAGTTTTCAAATCAATTTATCACAGTTCTTTTTTATATATAGATGAATCATGTCATGTATATACACTTTGTGAATAATTATTGGAAAATAGTGCATATTAAATTGCATCTTTCCTTATCCTGATCCATGTCCTGTTTGCCATAAATCTTTTGATAAAGCATAGTAAGTGGGAGATCTGTCAAAATCACACAATATGACTCTGCAACTTTTCCATACTTTGAATAGATAATACTTGAGTGTTCCACTTTCTTTGCGTGTTGTCCATCTAAAAGGATTCCTTAAAAGTCATATATTCAGCTGAAAGGGCCAATAATAATAGTTAATTGATGGACAACTACCATACTTCTATGCCCATAAGCAAAAGCTTATTATTATATATACATGGTCCCTATAGGCTACTATACAAAGATGATTAAAAAAATGTTTTGGATGAAGATCCATTGTTATTTTCTGTCTCATTATGAATATAATATAAGTTAAAAGAGATTCATAAGTTGCACTTGGTGATAAATATAACAAATGACAGTGACCTAGCTTTTCCTTATCTCACTGCTAATTTGTAGAAACTGTGAAGATTAATCTGGAACTTGTACTATTAAAGATTGATAGCAGGTCAATTGACAACTCTGTATTTTGCTCTGTGATCTACTACAGGGAACTGATGTACAAATAGCATCCCATCTCCTGATCGATAGGGGGAAATACTTATTTTTCTCGAGGATACCTTGTGAAGTGTGATGTTTGATTGTGAGAAAGCATAGAAAAAAATGATGATTCCATTATTATAGTAGTTGATTTGGATTCCATTATTTCGAATTAACTTGCTTACATATTGTTGGTTTTGTTAAGGCGGAGGAATACAAATACTTTGTGTATTCCTTGAAGGTGGATGATGATGACATGGAGAACGAAATGGTACCTAAGAACATCTCCGAAATCAATGAGAACATGAAGGAGAAGAGAGTTGGTATAAAGGACTG : GTGGACAAAGAGCAAATATGCATATCTAAACCAGCCTGCACTGAAGTCCATGGAACGCCACGGTTCCACTTATATTCCGCAACTATATTGCTACAAGGCTCCACCTCCACCAGTCACAAGCACCTTTGGGATCTTCTAGCCAATTCATGATGCCGTTCACGCACACAAGTCATGTTTCATGTATGTTTGTATATTGTGCTTGTATATATATCATTGTTTGCTCAAGTGTGTGATACTCAAAGGAAGTATCATATTTATGATCATTGAAGTTATTGTATTGGGGTTGTGAACTACTCTGCTGCACCTGTGGTAGAAATTACTGTTAATAAATAATGGTTCTATTATTGTAG</gDNA_template>
            <first_frame> A  Y  A  T  L  R  *  N  Q  P  *  V  R  S  L  L  F  L  I  S  L  S  S  S  S  T  Q  S  M  H  Q  C  N  L  N  R  H  D  E  Y  R  N  C  T  R  *  E  F  *  P  *  K  L  R  M  *  L  S  R  I  S  H  S  N  I  T  S  *  I  V  G  L  F  Q  S  N  T  A  *  V  R  M  F  G  V  H  F  Y  D  F  I  S  V  T  A  Q  G  W  F  L  *  F  W  Q  D  V  L  T  T  Y  C  V  R  G  *  G  *  D  K  I  S  T  I  E  *  K  K  I  I  F  S   : A  R  I  C  *  N  H  E  A  K  G  R  Q  K  C  S  *  W  K  K  V  K  E  D  R  S  S  T  S  T  T  T  T  N  V  E  V  S  S  *  Q  K  S  D  N  T  K  P  Y  Q  T  G  D  C  *  V  L  E  A  K  A  Q  D  *  R  R  P  L  P  *  C  H  Q  G  C  S  Q  N  Q  G  A  Q  S  L  G  E  V  F  K  S  I  Y  H  S  S  F  L  Y  I  D  E  S  C  H  V  Y  T  L  C  E  *  L  L  E  N  S  A  Y  *  I  A  S  F  L  I  L  I  H  V  L  F  A  I  N  L  L  I  K  H  S  K  W  E  I  C  Q  N  H  T  I  *  L  C  N  F  S  I  L  *  I  D  N  T  *  V  F  H  F  L  C  V  L  S  I  *  K  D  S  L  K  V  I  Y  S  A  E  R  A  N  N  N  S  *  L  M  D  N  Y  H  T  S  M  P  I  S  K  S  L  L  L  Y  I  H  G  P  Y  R  L  L  Y  K  D  D  *  K  N  V  L  D  E  D  P  L  L  F  S  V  S  L  *  I  *  Y  K  L  K  E  I  H  K  L  H  L  V  I  N  I  T  N  D  S  D  L  A  F  P  Y  L  T  A  N  L  *  K  L  *  R  L  I  W  N  L  Y  Y  *  R  L  I  A  G  Q  L  T  T  L  Y  F  A  L  *  S  T  T  G  N  *  C  T  N  S  I  P  S  P  D  R  *  G  E  I  L  I  F  L  E  D  T  L  *  S  V  M  F  D  C  E  K  A  *  K  K  M  M  I  P  L  L  *  *  L  I  W  I  P  L  F  R  I  N  L  L  T  Y  C  W  F  C  *  G  G  G  I  Q  I  L  C  V  F  L  E  G  G  *  *  *  H  G  E  R  N  G  T  *  E  H  L  R  N  Q  *  E  H  E  G  E  E  S  W  Y  K  G  L  :  V  D  K  E  Q  I  C  I  S  K  P  A  C  T  E  V  H  G  T  P  R  F  H  L  Y  S  A  T  I  L  L  Q  G  S  T  S  T  S  H  K  H  L  W  D  L  L  A  N  S  *  C  R  S  R  T  Q  V  M  F  H  V  C  L  Y  I  V  L  V  Y  I  S  L  F  A  Q  V  C  D  T  Q  R  K  Y  H  I  Y  D  H  *  S  Y  C  I  G  V  V  N  Y  S  A  A  P  V  V  E  I  T  V  N  K  *  W  F  Y  Y  C   </first_frame>
            <second_frame>  L  T  L  L  C  V  K  I  N  H  E  C  D  L  Y  C  F  *  S  P  F  L  P  H  R  P  N  L  C  T  S  V  I  *  T  V  M  M  N  I  E  I  V  P  D  R  S  F  D  R  K  N  *  E  C  S  Y  Q  E  S  A  I  P  I  L  L  V  E  L  W  D  Y  F  N  L  T  P  R  K  *  E  C  L  V  F  I  S  M  I  S  F  Q  *  L  L  K  V  G  F  C  N  S  G  K  M  C  *  Q  L  T  V  *  E  D  E  D  K  I  R  S  R  Q  L  N  R  R  K  *  S  F  Q  :  Q  E  S  V  E  I  M  K  Q  R  E  G  K  S  V  A  D  G  K  K  S  K  K  I  A  P  A  P  P  P  P  P  P  T  S  R  F  L  L  S  R  K  V  T  T  P  S  H  T  K  Q  E  I  A  K  Y  W  K  Q  K  R  K  T  E  E  D  H  F  L  D  A  I  K  A  A  A  R  I  R  A  R  N  L  S  V  K  F  S  N  Q  F  I  T  V  L  F  Y  I  *  M  N  H  V  M  Y  I  H  F  V  N  N  Y  W  K  I  V  H  I  K  L  H  L  S  L  S  *  S  M  S  C  L  P  *  I  F  *  *  S  I  V  S  G  R  S  V  K  I  T  Q  Y  D  S  A  T  F  P  Y  F  E  *  I  I  L  E  C  S  T  F  F  A  C  C  P  S  K  R  I  P  *  K  S  Y  I  Q  L  K  G  P  I  I  I  V  N  *  W  T  T  T  I  L  L  C  P  *  A  K  A  Y  Y  Y  I  Y  M  V  P  I  G  Y  Y  T  K  M  I  K  K  M  F  W  M  K  I  H  C  Y  F  L  S  H  Y  E  Y  N  I  S  *  K  R  F  I  S  C  T  W  *  *  I  *  Q  M  T  V  T  *  L  F  L  I  S  L  L  I  C  R  N  C  E  D  *  S  G  T  C  T  I  K  D  *  *  Q  V  N  *  Q  L  C  I  L  L  C  D  L  L  Q  G  T  D  V  Q  I  A  S  H  L  L  I  D  R  G  K  Y  L  F  F  S  R  I  P  C  E  V  *  C  L  I  V  R  K  H  R  K  K  *  *  F  H  Y  Y  S  S  *  F  G  F  H  Y  F  E  L  T  C  L  H  I  V  G  F  V  K  A  E  E  Y  K  Y  F  V  Y  S  L  K  V  D  D  D  D  M  E  N  E  M  V  P  K  N  I  S  E  I  N  E  N  M  K  E  K  R  V  G  I  K  D  W :   W  T  K  S  K  Y  A  Y  L  N  Q  P  A  L  K  S  M  E  R  H  G  S  T  Y  I  P  Q  L  Y  C  Y  K  A  P  P  P  P  V  T  S  T  F  G  I  F  *  P  I  H  D  A  V  H  A  H  K  S  C  F  M  Y  V  C  I  L  C  L  Y  I  Y  H  C  L  L  K  C  V  I  L  K  G  S  I  I  F  M  I  I  E  V  I  V  L  G  L  *  T  T  L  L  H  L  W  *  K  L  L  L  I  N  N  G  S  I  I  V  </second_frame>
            <third_frame>   L  R  Y  S  A  L  K  S  T  M  S  A  I  F  I  V  F  N  L  P  F  F  L  I  D  P  I  Y  A  P  V  *  S  E  P  S  *  *  I  *  K  L  Y  Q  I  G  V  L  T  V  K  I  E  N  V  V  I  K  N  Q  P  F  Q  Y  Y  *  L  N  C  G  I  I  S  I  *  H  R  V  S  K  N  V  W  C  S  F  L  *  F  H  F  S  D  C  S  R  L  V  F  V  I  L  A  R  C  A  D  N  L  L  C  E  R  M  R  I  R  *  D  L  D  N  *  I  E  E  N  N  L  F  S :   K  N  L  L  K  S  *  S  K  G  K  A  K  V  *  L  M  E  K  S  Q  R  R  S  L  Q  H  L  H  H  H  H  Q  R  R  G  F  F  L  A  E  K  *  Q  H  Q  A  I  P  N  R  R  L  L  S  I  G  S  K  S  A  R  L  K  K  T  T  S  L  M  P  S  R  L  Q  P  E  S  G  R  A  I  S  R  *  S  F  Q  I  N  L  S  Q  F  F  F  I  Y  R  *  I  M  S  C  I  Y  T  L  *  I  I  I  G  K  *  C  I  L  N  C  I  F  P  Y  P  D  P  C  P  V  C  H  K  S  F  D  K  A  *  *  V  G  D  L  S  K  S  H  N  M  T  L  Q  L  F  H  T  L  N  R  *  Y  L  S  V  P  L  S  L  R  V  V  H  L  K  G  F  L  K  S  H  I  F  S  *  K  G  Q  *  *  *  L  I  D  G  Q  L  P  Y  F  Y  A  H  K  Q  K  L  I  I  I  Y  T  W  S  L  *  A  T  I  Q  R  *  L  K  K  C  F  G  *  R  S  I  V  I  F  C  L  I  M  N  I  I  *  V  K  R  D  S  *  V  A  L  G  D  K  Y  N  K  *  Q  *  P  S  F  S  L  S  H  C  *  F  V  E  T  V  K  I  N  L  E  L  V  L  L  K  I  D  S  R  S  I  D  N  S  V  F  C  S  V  I  Y  Y  R  E  L  M  Y  K  *  H  P  I  S  *  S  I  G  G  N  T  Y  F  S  R  G  Y  L  V  K  C  D  V  *  L  *  E  S  I  E  K  N  D  D  S  I  I  I  V  V  D  L  D  S  I  I  S  N  *  L  A  Y  I  L  L  V  L  L  R  R  R  N  T  N  T  L  C  I  P  *  R  W  M  M  M  T  W  R  T  K  W  Y  L  R  T  S  P  K  S  M  R  T  *  R  R  R  E  L  V  *  R  T   : G  G  Q  R  A  N  M  H  I  *  T  S  L  H  *  S  P  W  N  A  T  V  P  L  I  F  R  N  Y  I  A  T  R  L  H  L  H  Q  S  Q  A  P  L  G  S  S  S  Q  F  M  M  P  F  T  H  T  S  H  V  S  C  M  F  V  Y  C  A  C  I  Y  I  I  V  C  S  S  V  *  Y  S  K  E  V  S  Y  L  *  S  L  K  L  L  Y  W  G  C  E  L  L  C  C  T  C  G  R  N  Y  C  *  *  I  M  V  L  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41346" stop="41162"/>
                    <exon start="41065" stop="40927"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGFHYFELTCLHIVGFVKAEEYKYFVYSLKVDDDDMENEMVPKNISEINENMKEKRVGIKDWWTKSKYAYLNQPALKSMERHGSTYIPQLYCYKAPPPPVTSTFGIF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43035" stop="43027"/>
                    <exon start="42396" stop="42100"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFQQESVEIMKQREGKSVADGKKSKKIAPAPPPPPPTSRFLLSRKVTTPSHTKQEIAKYWKQKRKTEEDHFLDAIKAAARIRARNLSVKFSNQFITVLFYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="44327" PGL_stop="43766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44327" e_stop="43766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="44327" e_stop="43766" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44327" stop="43766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTTCTCATTTTTAAAGTTTAGGCCATCAAAAGTATGTTCAGTCAAATCATACAATTTATAACTTACTACTGTACAACTTCTCCATCTCAGAATAGAAATAGAAAGTATTGAGTGCTAAACTTTCTGTGTATCCTCCTAATAAGATTCCTTAGAAAGTCAAATTGTTCCAGTGGGTCAATTATTGTTGTTTGAAGAACGATCTAGTACCACTACTAATACAACAACATACTTAGAGGTCGTTTGGTAGAGTATATAAGTATAATGCTAAATAGAGTGTATAGTAATGCATGTATTAGTTATGTTTGCATTAATTATACATAAATTATTTTAATGCATTATTTGGTTTGATGCATTTAAAATAGTATGTATTGCATTAAAAAATTATTTACAAATATACCCTTCTCTTTTATTGTGGAAATTGGTAAACATGTTTAAAAAAAATGTTTTGAGGGACAATTGAGTCTTTTATCATTTTAATGCATGTATTAAAATCATTGCATGGTTAATACCTAAATATTCATGGTATTAATAATGCACACCTTAATACACAATCATTAGT</gDNA_template>
            <first_frame> F  F  L  I  F  K  V  *  A  I  K  S  M  F  S  Q  I  I  Q  F  I  T  Y  Y  C  T  T  S  P  S  Q  N  R  N  R  K  Y  *  V  L  N  F  L  C  I  L  L  I  R  F  L  R  K  S  N  C  S  S  G  S  I  I  V  V  *  R  T  I  *  Y  H  Y  *  Y  N  N  I  L  R  G  R  L  V  E  Y  I  S  I  M  L  N  R  V  Y  S  N  A  C  I  S  Y  V  C  I  N  Y  T  *  I  I  L  M  H  Y  L  V  *  C  I  *  N  S  M  Y  C  I  K  K  L  F  T  N  I  P  F  S  F  I  V  E  I  G  K  H  V  *  K  K  C  F  E  G  Q  L  S  L  L  S  F  *  C  M  Y  *  N  H  C  M  V  N  T  *  I  F  M  V  L  I  M  H  T  L  I  H  N  H  *  </first_frame>
            <second_frame>  S  F  S  F  L  K  F  R  P  S  K  V  C  S  V  K  S  Y  N  L  *  L  T  T  V  Q  L  L  H  L  R  I  E  I  E  S  I  E  C  *  T  F  C  V  S  S  *  *  D  S  L  E  S  Q  I  V  P  V  G  Q  L  L  L  F  E  E  R  S  S  T  T  T  N  T  T  T  Y  L  E  V  V  W  *  S  I  *  V  *  C  *  I  E  C  I  V  M  H  V  L  V  M  F  A  L  I  I  H  K  L  F  *  C  I  I  W  F  D  A  F  K  I  V  C  I  A  L  K  N  Y  L  Q  I  Y  P  S  L  L  L  W  K  L  V  N  M  F  K  K  N  V  L  R  D  N  *  V  F  Y  H  F  N  A  C  I  K  I  I  A  W  L  I  P  K  Y  S  W  Y  *  *  C  T  P  *  Y  T  I  I  S </second_frame>
            <third_frame>   L  S  H  F  *  S  L  G  H  Q  K  Y  V  Q  S  N  H  T  I  Y  N  L  L  L  Y  N  F  S  I  S  E  *  K  *  K  V  L  S  A  K  L  S  V  Y  P  P  N  K  I  P  *  K  V  K  L  F  Q  W  V  N  Y  C  C  L  K  N  D  L  V  P  L  L  I  Q  Q  H  T  *  R  S  F  G  R  V  Y  K  Y  N  A  K  *  S  V  *  *  C  M  Y  *  L  C  L  H  *  L  Y  I  N  Y  F  N  A  L  F  G  L  M  H  L  K  *  Y  V  L  H  *  K  I  I  Y  K  Y  T  L  L  F  Y  C  G  N  W  *  T  C  L  K  K  M  F  *  G  T  I  E  S  F  I  I  L  M  H  V  L  K  S  L  H  G  *  Y  L  N  I  H  G  I  N  N  A  H  L  N  T  Q  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0127J16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="45873" PGL_stop="45067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45873" e_stop="45067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="45873" e_stop="45067" e_length="807"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45873" stop="45067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCCCGCTCCTATGCAATAGCTCGCAAACCACATAGGAGAGGTAACCTGCACAAGGTAAGCTTGGTGCGACGAGCTCGACCCAGAAGGCAAACCCCTTGCTTTCGCTGGCAAGGGGTTTCGAATTTGAGACCTCCAACATGGAAGTCCCAAGCTCAAACCACTGGGCCACCCTGAAGGGTAACTGTTGGCCTTGCAAAATTATTAGTCATCTTATCTGCAATTCAGATTTAATTATAAGCCAACTGATGGAGGTCAAAGATCCGTAATGTTTTTGCTTACCATAAATCTGTAAATTAAGTTTTGCCTCGTAGTCTGCAGTTTCATAAGTTGTTGAGGAGCTGGTTCTCCCTTTCACAATGGGGAAATCTTTTATATATTTGTCTTAATTATAAACATCAAGCTCAAACATGTGTCATTTGGTATGTTTGATCTGAGAAAAGAAACATTTCATCAGCCAATTCCCAGTACAATAATGGATCTTCTCCGAGATAGAATAGTGGGGAGTTGGGCAGGAAGTAAGATAAAAATTCTAGCAAGGTTGATCTTAGTAGTTGTAACTTAATGATCCTGGTGCAGACATGTGCTGAGATAATCAGTTATCATGATCATGGCTGGACAAGATTCATCTTGAAGTTCTGTTTCCTTTTAATTTATGTATATCTTTCTCTTTGAGAAGCAGGCTTTACTTAGGTTTCTTGATCAAAGGGATTGTGCATAATGTCCATTGGCCACTGCTACATTCATAAATTTCTGACATCAGTATCATTCCTACCATTCTAACCCCACTGATAATGAGTTCGTCTTC</gDNA_template>
            <first_frame> N  P  A  P  M  Q  *  L  A  N  H  I  G  E  V  T  C  T  R  *  A  W  C  D  E  L  D  P  E  G  K  P  L  A  F  A  G  K  G  F  R  I  *  D  L  Q  H  G  S  P  K  L  K  P  L  G  H  P  E  G  *  L  L  A  L  Q  N  Y  *  S  S  Y  L  Q  F  R  F  N  Y  K  P  T  D  G  G  Q  R  S  V  M  F  L  L  T  I  N  L  *  I  K  F  C  L  V  V  C  S  F  I  S  C  *  G  A  G  S  P  F  H  N  G  E  I  F  Y  I  F  V  L  I  I  N  I  K  L  K  H  V  S  F  G  M  F  D  L  R  K  E  T  F  H  Q  P  I  P  S  T  I  M  D  L  L  R  D  R  I  V  G  S  W  A  G  S  K  I  K  I  L  A  R  L  I  L  V  V  V  T  *  *  S  W  C  R  H  V  L  R  *  S  V  I  M  I  M  A  G  Q  D  S  S  *  S  S  V  S  F  *  F  M  Y  I  F  L  F  E  K  Q  A  L  L  R  F  L  D  Q  R  D  C  A  *  C  P  L  A  T  A  T  F  I  N  F  *  H  Q  Y  H  S  Y  H  S  N  P  T  D  N  E  F  V  F </first_frame>
            <second_frame>  T  P  L  L  C  N  S  S  Q  T  T  *  E  R  *  P  A  Q  G  K  L  G  A  T  S  S  T  Q  K  A  N  P  L  L  S  L  A  R  G  F  E  F  E  T  S  N  M  E  V  P  S  S  N  H  W  A  T  L  K  G  N  C  W  P  C  K  I  I  S  H  L  I  C  N  S  D  L  I  I  S  Q  L  M  E  V  K  D  P  *  C  F  C  L  P  *  I  C  K  L  S  F  A  S  *  S  A  V  S  *  V  V  E  E  L  V  L  P  F  T  M  G  K  S  F  I  Y  L  S  *  L  *  T  S  S  S  N  M  C  H  L  V  C  L  I  *  E  K  K  H  F  I  S  Q  F  P  V  Q  *  W  I  F  S  E  I  E  *  W  G  V  G  Q  E  V  R  *  K  F  *  Q  G  *  S  *  *  L  *  L  N  D  P  G  A  D  M  C  *  D  N  Q  L  S  *  S  W  L  D  K  I  H  L  E  V  L  F  P  F  N  L  C  I  S  F  S  L  R  S  R  L  Y  L  G  F  L  I  K  G  I  V  H  N  V  H  W  P  L  L  H  S  *  I  S  D  I  S  I  I  P  T  I  L  T  P  L  I  M  S  S  S   </second_frame>
            <third_frame>   P  R  S  Y  A  I  A  R  K  P  H  R  R  G  N  L  H  K  V  S  L  V  R  R  A  R  P  R  R  Q  T  P  C  F  R  W  Q  G  V  S  N  L  R  P  P  T  W  K  S  Q  A  Q  T  T  G  P  P  *  R  V  T  V  G  L  A  K  L  L  V  I  L  S  A  I  Q  I  *  L  *  A  N  *  W  R  S  K  I  R  N  V  F  A  Y  H  K  S  V  N  *  V  L  P  R  S  L  Q  F  H  K  L  L  R  S  W  F  S  L  S  Q  W  G  N  L  L  Y  I  C  L  N  Y  K  H  Q  A  Q  T  C  V  I  W  Y  V  *  S  E  K  R  N  I  S  S  A  N  S  Q  Y  N  N  G  S  S  P  R  *  N  S  G  E  L  G  R  K  *  D  K  N  S  S  K  V  D  L  S  S  C  N  L  M  I  L  V  Q  T  C  A  E  I  I  S  Y  H  D  H  G  W  T  R  F  I  L  K  F  C  F  L  L  I  Y  V  Y  L  S  L  *  E  A  G  F  T  *  V  S  *  S  K  G  L  C  I  M  S  I  G  H  C  Y  I  H  K  F  L  T  S  V  S  F  L  P  F  *  P  H  *  *  *  V  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45537" stop="45310"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GAGSPFHNGEIFYIFVLIINIKLKHVSFGMFDLRKETFHQPIPSTIMDLLRDRIVGSWAGSKIKILARLILVVVT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45827" stop="45606"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAQGKLGATSSTQKANPLLSLARGFEFETSNMEVPSSNHWATLKGNCWPCKIISHLICNSDLIISQLMEVKDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="47718" PGL_stop="47052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47718" e_stop="47052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47718" e_stop="47052" e_length="667"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47718" stop="47173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47634" stop="47129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47583" stop="47198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47581" stop="47052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTCCCAAATTCACGGAGAACGCGGTTTTGAACCCGATTCATCTTCCCCAAATTTTTCTCTTCATAAAAACCCCTTACCACAATCGAACCCCTTCACCGTCAAAGATGGCATCAATCTACAGTTGTAAAGAGTGCAATACAAACTTCAATCTCCATACCAACTATCTTTTCCCACCGGATTTTTACTTCGAAGCCGGCAATAAAGGTACTCTATCTTTCTCCGCTGTTGATTCATCCAAATTCAAGTTCGAGAAAGAAGATAAAATTAAACCCTTTTTCGAAACCCTTGATTATTGGGGAATTCAGAGGAAAAGGACTAAGATGATGTGTATGAATTGTGGGAAGGTTGTGGGCTATGTGTATGATGACGGGCCACCCATGACTGAGAGTCCGGGTCAGTTTCATTTTGGTCCTAGTCAGGTTATTCCTAGAGCTGCAAGGTATAGGATAAAAAATAAAGCTTTGAAGATTACTTCTGAGACTTGACATGTGATTTGATTTTTGATGTTCTTTTTTTTTAGATGTTGAGGTTTGTATATGGATTTAAGAGATGTTTGATGTTTGTGTATATGAGATTTTGATTTTTACATTTTGTTGGTTTTGTGAGCTGTTTCATATTTTGTGTAAATATTTATACTGGATCAATAAAGACTCACCTTTTATGA</gDNA_template>
            <first_frame> A  F  P  N  S  R  R  T  R  F  *  T  R  F  I  F  P  K  F  F  S  S  *  K  P  L  T  T  I  E  P  L  H  R  Q  R  W  H  Q  S  T  V  V  K  S  A  I  Q  T  S  I  S  I  P  T  I  F  S  H  R  I  F  T  S  K  P  A  I  K  V  L  Y  L  S  P  L  L  I  H  P  N  S  S  S  R  K  K  I  K  L  N  P  F  S  K  P  L  I  I  G  E  F  R  G  K  G  L  R  *  C  V  *  I  V  G  R  L  W  A  M  C  M  M  T  G  H  P  *  L  R  V  R  V  S  F  I  L  V  L  V  R  L  F  L  E  L  Q  G  I  G  *  K  I  K  L  *  R  L  L  L  R  L  D  M  *  F  D  F  *  C  S  F  F  L  D  V  E  V  C  I  W  I  *  E  M  F  D  V  C  V  Y  E  I  L  I  F  T  F  C  W  F  C  E  L  F  H  I  L  C  K  Y  L  Y  W  I  N  K  D  S  P  F  M  </first_frame>
            <second_frame>  P  S  Q  I  H  G  E  R  G  F  E  P  D  S  S  S  P  N  F  S  L  H  K  N  P  L  P  Q  S  N  P  F  T  V  K  D  G  I  N  L  Q  L  *  R  V  Q  Y  K  L  Q  S  P  Y  Q  L  S  F  P  T  G  F  L  L  R  S  R  Q  *  R  Y  S  I  F  L  R  C  *  F  I  Q  I  Q  V  R  E  R  R  *  N  *  T  L  F  R  N  P  *  L  L  G  N  S  E  E  K  D  *  D  D  V  Y  E  L  W  E  G  C  G  L  C  V  *  *  R  A  T  H  D  *  E  S  G  S  V  S  F  W  S  *  S  G  Y  S  *  S  C  K  V  *  D  K  K  *  S  F  E  D  Y  F  *  D  L  T  C  D  L  I  F  D  V  L  F  F  *  M  L  R  F  V  Y  G  F  K  R  C  L  M  F  V  Y  M  R  F  *  F  L  H  F  V  G  F  V  S  C  F  I  F  C  V  N  I  Y  T  G  S  I  K  T  H  L  L  * </second_frame>
            <third_frame>   L  P  K  F  T  E  N  A  V  L  N  P  I  H  L  P  Q  I  F  L  F  I  K  T  P  Y  H  N  R  T  P  S  P  S  K  M  A  S  I  Y  S  C  K  E  C  N  T  N  F  N  L  H  T  N  Y  L  F  P  P  D  F  Y  F  E  A  G  N  K  G  T  L  S  F  S  A  V  D  S  S  K  F  K  F  E  K  E  D  K  I  K  P  F  F  E  T  L  D  Y  W  G  I  Q  R  K  R  T  K  M  M  C  M  N  C  G  K  V  V  G  Y  V  Y  D  D  G  P  P  M  T  E  S  P  G  Q  F  H  F  G  P  S  Q  V  I  P  R  A  A  R  Y  R  I  K  N  K  A  L  K  I  T  S  E  T  *  H  V  I  *  F  L  M  F  F  F  F  R  C  *  G  L  Y  M  D  L  R  D  V  *  C  L  C  I  *  D  F  D  F  Y  I  L  L  V  L  *  A  V  S  Y  F  V  *  I  F  I  L  D  Q  *  R  L  T  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47716" stop="47231"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPKFTENAVLNPIHLPQIFLFIKTPYHNRTPSPSKMASIYSCKECNTNFNLHTNYLFPPDFYFEAGNKGTLSFSAVDSSKFKFEKEDKIKPFFETLDYWGIQRKRTKMMCMNCGKVVGYVYDDGPPMTESPGQFHFGPSQVIPRAARYRIKNKALKITSET*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="52871" PGL_stop="54568"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53687" e_stop="54289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="53687" e_stop="54289" e_length="603"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53687" stop="54289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53687" stop="54289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53687" stop="54069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53687" stop="54062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233379" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGGTTTGCCAGTGGAGGTCTAGAAACAGGTTTTGAACAAGTACAGGCTGAACAAGTTTTGATAGAGCAGTATTTTTCTATTACATCAACATGACCCTTTTTAGGAGATAGCTTCTATTTACTTACTAGTTAATCAGGATTTGGTAGTTCAGTGAATTGTATTTTTTTGGAAGGTTGCAAATTTCGTCATGCCTTTTCATTTTTCCTCCTGTTAGAAGGGAGAAATGATAAAACACTCTAATTGCATACCAATGTGAATAGATAGAAGATTCATTTAAAAGAAGGAACATAAAGAACTCTATGAATGATCAAATCAGGGAAAAGAGTGGCAACACTTCCTATATGAGTAGCTTTTACCTTAGAAGAATCAGGAAAATTGACATAGATAGGATTGGGTAAAGGAGTAAGGTAAGTGAAAAGCTCAGGATTAGAAGATAAATGTTCTGAAGCTCCCGAGTCTAATATCTATTCACTAGACTTGATTAAAATAAAGAGTAGTCAAACTCACTCCATTTTGATTGTTTATTGAACGGTGAAAATTGGATTATAATTCATGTATAGAGGTGATTCTAAAACTAGACAGCACTTAATGGTCTTGCTAC</gDNA_template>
            <first_frame> S  G  L  P  V  E  V  *  K  Q  V  L  N  K  Y  R  L  N  K  F  *  *  S  S  I  F  L  L  H  Q  H  D  P  F  *  E  I  A  S  I  Y  L  L  V  N  Q  D  L  V  V  Q  *  I  V  F  F  W  K  V  A  N  F  V  M  P  F  H  F  S  S  C  *  K  G  E  M  I  K  H  S  N  C  I  P  M  *  I  D  R  R  F  I  *  K  K  E  H  K  E  L  Y  E  *  S  N  Q  G  K  E  W  Q  H  F  L  Y  E  *  L  L  P  *  K  N  Q  E  N  *  H  R  *  D  W  V  K  E  *  G  K  *  K  A  Q  D  *  K  I  N  V  L  K  L  P  S  L  I  S  I  H  *  T  *  L  K  *  R  V  V  K  L  T  P  F  *  L  F  I  E  R  *  K  L  D  Y  N  S  C  I  E  V  I  L  K  L  D  S  T  *  W  S  C  Y </first_frame>
            <second_frame>  Q  V  C  Q  W  R  S  R  N  R  F  *  T  S  T  G  *  T  S  F  D  R  A  V  F  F  Y  Y  I  N  M  T  L  F  R  R  *  L  L  F  T  Y  *  L  I  R  I  W  *  F  S  E  L  Y  F  F  G  R  L  Q  I  S  S  C  L  F  I  F  P  P  V  R  R  E  K  *  *  N  T  L  I  A  Y  Q  C  E  *  I  E  D  S  F  K  R  R  N  I  K  N  S  M  N  D  Q  I  R  E  K  S  G  N  T  S  Y  M  S  S  F  Y  L  R  R  I  R  K  I  D  I  D  R  I  G  *  R  S  K  V  S  E  K  L  R  I  R  R  *  M  F  *  S  S  R  V  *  Y  L  F  T  R  L  D  *  N  K  E  *  S  N  S  L  H  F  D  C  L  L  N  G  E  N  W  I  I  I  H  V  *  R  *  F  *  N  *  T  A  L  N  G  L  A   </second_frame>
            <third_frame>   R  F  A  S  G  G  L  E  T  G  F  E  Q  V  Q  A  E  Q  V  L  I  E  Q  Y  F  S  I  T  S  T  *  P  F  L  G  D  S  F  Y  L  L  T  S  *  S  G  F  G  S  S  V  N  C  I  F  L  E  G  C  K  F  R  H  A  F  S  F  F  L  L  L  E  G  R  N  D  K  T  L  *  L  H  T  N  V  N  R  *  K  I  H  L  K  E  G  T  *  R  T  L  *  M  I  K  S  G  K  R  V  A  T  L  P  I  *  V  A  F  T  L  E  E  S  G  K  L  T  *  I  G  L  G  K  G  V  R  *  V  K  S  S  G  L  E  D  K  C  S  E  A  P  E  S  N  I  Y  S  L  D  L  I  K  I  K  S  S  Q  T  H  S  I  L  I  V  Y  *  T  V  K  I  G  L  *  F  M  Y  R  G  D  S  K  T  R  Q  H  L  M  V  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0127J16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52871" e_stop="53151"/>
            <exon e_start="53244" e_stop="53507"/>
            <exon e_start="54450" e_stop="54568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.958" acc_prob="0.988" e_score="0.886"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="52871" e_stop="53151" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53152" i_stop="53243" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.886">
            <gDNA_exon_boundary e_start="53244" e_stop="53507" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.988">
            <gDNA_intron_boundary i_start="53508" i_stop="54449" i_length="942"/>
          </intron>
          <exon e_serial="3" e_score="0.950">
            <gDNA_exon_boundary e_start="54450" e_stop="54568" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52871" stop="53151"/>
              <exon start="53244" stop="53507"/>
              <exon start="54450" stop="54568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52881" stop="53151"/>
              <exon start="53244" stop="53273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACTGAGGGGACGAAAGAAGCGAAAACCAGATCTGTACTGAACAAGTGAAATTGACTGAAGAATGGAGTCTTAAAATAGAAACTTACATATAGATTAATCAAAACCCTCTGTTATCTATCTTGTTCGAAAAAAAAACAAAATAATTATTCTACTGTATAAATTTCTTCTGTAGAGGTGTAACCTAGGTTGCGCCACCATGGATTTGCGCTTCCCCTTCTCGCCGGCGGAGGTTGCCAAGGTCCGGACGGTCCAGTTCGGCATTGTCAGCCCCGACGAAATT : AGACAAATGTCTGTGGTGCACATTGAGCATGGTGAGACTACGGAGAGAGGGAAACCAAAGCCTGGAGGGTTGAGCGATCCTCGGCTTGGGACGATTGATCGGAAGATGAAGTGTGAGACGTGTATGGCGAACATGGCTGAATGTCCGGGGCATTTTGGTCACCTTGAGCTTGCGAAACCTATGTTTCATATAGGGTTTATGAAACCTGTTCTTAGTATCCTTCGGTGTGTCTGCTTCAATTGCTCCAAAATTCTGGCGGATGAG : GACGATCCTAAGTTCAAACAAGCCATGAGAATCAGGAATCCTAAAAACAGGCTTAGAAAGATGTTGGATGCTTGCAAGAACAAAACAAAATGTGAAGGAGGGGATGAAATTGATGTACA</gDNA_template>
            <first_frame> N  *  G  D  E  R  S  E  N  Q  I  C  T  E  Q  V  K  L  T  E  E  W  S  L  K  I  E  T  Y  I  *  I  N  Q  N  P  L  L  S  I  L  F  E  K  K  T  K  *  L  F  Y  C  I  N  F  F  C  R  G  V  T  *  V  A  P  P  W  I  C  A  S  P  S  R  R  R  R  L  P  R  S  G  R  S  S  S  A  L  S  A  P  T  K  L :   D  K  C  L  W  C  T  L  S  M  V  R  L  R  R  E  G  N  Q  S  L  E  G  *  A  I  L  G  L  G  R  L  I  G  R  *  S  V  R  R  V  W  R  T  W  L  N  V  R  G  I  L  V  T  L  S  L  R  N  L  C  F  I  *  G  L  *  N  L  F  L  V  S  F  G  V  S  A  S  I  A  P  K  F  W  R  M  R :   T  I  L  S  S  N  K  P  *  E  S  G  I  L  K  T  G  L  E  R  C  W  M  L  A  R  T  K  Q  N  V  K  E  G  M  K  L  M  Y  </first_frame>
            <second_frame>  T  E  G  T  K  E  A  K  T  R  S  V  L  N  K  *  N  *  L  K  N  G  V  L  K  *  K  L  T  Y  R  L  I  K  T  L  C  Y  L  S  C  S  K  K  K  Q  N  N  Y  S  T  V  *  I  S  S  V  E  V  *  P  R  L  R  H  H  G  F  A  L  P  L  L  A  G  G  G  C  Q  G  P  D  G  P  V  R  H  C  Q  P  R  R  N   : *  T  N  V  C  G  A  H  *  A  W  *  D  Y  G  E  R  E  T  K  A  W  R  V  E  R  S  S  A  W  D  D  *  S  E  D  E  V  *  D  V  Y  G  E  H  G  *  M  S  G  A  F  W  S  P  *  A  C  E  T  Y  V  S  Y  R  V  Y  E  T  C  S  *  Y  P  S  V  C  L  L  Q  L  L  Q  N  S  G  G  *   : G  R  S  *  V  Q  T  S  H  E  N  Q  E  S  *  K  Q  A  *  K  D  V  G  C  L  Q  E  Q  N  K  M  *  R  R  G  *  N  *  C  T </second_frame>
            <third_frame>   L  R  G  R  K  K  R  K  P  D  L  Y  *  T  S  E  I  D  *  R  M  E  S  *  N  R  N  L  H  I  D  *  S  K  P  S  V  I  Y  L  V  R  K  K  N  K  I  I  I  L  L  Y  K  F  L  L  *  R  C  N  L  G  C  A  T  M  D  L  R  F  P  F  S  P  A  E  V  A  K  V  R  T  V  Q  F  G  I  V  S  P  D  E  I  :  R  Q  M  S  V  V  H  I  E  H  G  E  T  T  E  R  G  K  P  K  P  G  G  L  S  D  P  R  L  G  T  I  D  R  K  M  K  C  E  T  C  M  A  N  M  A  E  C  P  G  H  F  G  H  L  E  L  A  K  P  M  F  H  I  G  F  M  K  P  V  L  S  I  L  R  C  V  C  F  N  C  S  K  I  L  A  D  E  :  D  D  P  K  F  K  Q  A  M  R  I  R  N  P  K  N  R  L  R  K  M  L  D  A  C  K  N  K  T  K  C  E  G  G  D  E  I  D  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53044" stop="53151"/>
                    <exon start="53244" stop="53507"/>
                    <exon start="54450" stop="54566"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RCNLGCATMDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPKFKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="53495" PGL_stop="52935"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53495" e_stop="52935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="53495" e_stop="52935" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53495" stop="52935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53495" stop="52937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTGGAGCAATTGAAGCAGACACACCGAAGGATACTAAGAACAGGTTTCATAAACCCTATATGAAACATAGGTTTCGCAAGCTCAAGGTGACCAAAATGCCCCGGACATTCAGCCATGTTCGCCATACACGTCTCACACTTCATCTTCCGATCAATCGTCCCAAGCCGAGGATCGCTCAACCCTCCAGGCTTTGGTTTCCCTCTCTCCGTAGTCTCACCATGCTCAATGTGCACCACAGACATTTGTCTCTGCAATTACGTCAAAAAACCAAGTTACAAAAACCAAATCAATTTAAACCCTAGAGAATTCGAGAAAATGAATCAAGATTAGTGAAAATTACAATTTCGTCGGGGCTGACAATGCCGAACTGGACCGTCCGGACCTTGGCAACCTCCGCCGGCGAGAAGGGGAAGCGCAAATCCATGGTGGCGCAACCTAGGTTACACCTCTACAGAAGAAATTTATACAGTAGAATAATTATTTTGTTTTTTTTTCGAACAAGATAGATAACAGAGGGTTTTGATTAATCTATATGTAAGTTTCTATTTTAAGACTCC</gDNA_template>
            <first_frame> N  F  G  A  I  E  A  D  T  P  K  D  T  K  N  R  F  H  K  P  Y  M  K  H  R  F  R  K  L  K  V  T  K  M  P  R  T  F  S  H  V  R  H  T  R  L  T  L  H  L  P  I  N  R  P  K  P  R  I  A  Q  P  S  R  L  W  F  P  S  L  R  S  L  T  M  L  N  V  H  H  R  H  L  S  L  Q  L  R  Q  K  T  K  L  Q  K  P  N  Q  F  K  P  *  R  I  R  E  N  E  S  R  L  V  K  I  T  I  S  S  G  L  T  M  P  N  W  T  V  R  T  L  A  T  S  A  G  E  K  G  K  R  K  S  M  V  A  Q  P  R  L  H  L  Y  R  R  N  L  Y  S  R  I  I  I  L  F  F  F  R  T  R  *  I  T  E  G  F  D  *  S  I  C  K  F  L  F  *  D  S </first_frame>
            <second_frame>  I  L  E  Q  L  K  Q  T  H  R  R  I  L  R  T  G  F  I  N  P  I  *  N  I  G  F  A  S  S  R  *  P  K  C  P  G  H  S  A  M  F  A  I  H  V  S  H  F  I  F  R  S  I  V  P  S  R  G  S  L  N  P  P  G  F  G  F  P  L  S  V  V  S  P  C  S  M  C  T  T  D  I  C  L  C  N  Y  V  K  K  P  S  Y  K  N  Q  I  N  L  N  P  R  E  F  E  K  M  N  Q  D  *  *  K  L  Q  F  R  R  G  *  Q  C  R  T  G  P  S  G  P  W  Q  P  P  P  A  R  R  G  S  A  N  P  W  W  R  N  L  G  Y  T  S  T  E  E  I  Y  T  V  E  *  L  F  C  F  F  F  E  Q  D  R  *  Q  R  V  L  I  N  L  Y  V  S  F  Y  F  K  T   </second_frame>
            <third_frame>   F  W  S  N  *  S  R  H  T  E  G  Y  *  E  Q  V  S  *  T  L  Y  E  T  *  V  S  Q  A  Q  G  D  Q  N  A  P  D  I  Q  P  C  S  P  Y  T  S  H  T  S  S  S  D  Q  S  S  Q  A  E  D  R  S  T  L  Q  A  L  V  S  L  S  P  *  S  H  H  A  Q  C  A  P  Q  T  F  V  S  A  I  T  S  K  N  Q  V  T  K  T  K  S  I  *  T  L  E  N  S  R  K  *  I  K  I  S  E  N  Y  N  F  V  G  A  D  N  A  E  L  D  R  P  D  L  G  N  L  R  R  R  E  G  E  A  Q  I  H  G  G  A  T  *  V  T  P  L  Q  K  K  F  I  Q  *  N  N  Y  F  V  F  F  S  N  K  I  D  N  R  G  F  *  L  I  Y  M  *  V  S  I  L  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53495" stop="53190"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFGAIEADTPKDTKNRFHKPYMKHRFRKLKVTKMPRTFSHVRHTRLTLHLPINRPKPRIAQPSRLWFPSLRSLTMLNVHHRHLSLQLRQKTKLQKPNQFKP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53401" stop="53162"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKCPGHSAMFAIHVSHFIFRSIVPSRGSLNPPGFGFPLSVVSPCSMCTTDICLCNYVKKPSYKNQINLNPREFEKMNQD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53189" stop="52986"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRENESRLVKITISSGLTMPNWTVRTLATSAGEKGKRKSMVAQPRLHLYRRNLYSRIIILFFFRTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="55392" PGL_stop="58690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55392" e_stop="55612"/>
            <exon e_start="55726" e_stop="55867"/>
            <exon e_start="55949" e_stop="56284"/>
            <exon e_start="56376" e_stop="56662"/>
            <exon e_start="56947" e_stop="57205"/>
            <exon e_start="57290" e_stop="58690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.443" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.380" acc_prob="0.526" e_score="0.993"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55392" e_stop="55612" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.443" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55613" i_stop="55725" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55726" e_stop="55867" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.884" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55868" i_stop="55948" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55949" e_stop="56284" e_length="336"/>
          </exon>
          <intron i_serial="3" don_prob="0.929" acc_prob="0.997">
            <gDNA_intron_boundary i_start="56285" i_stop="56375" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="56376" e_stop="56662" e_length="287"/>
          </exon>
          <intron i_serial="4" don_prob="0.380" acc_prob="0.526">
            <gDNA_intron_boundary i_start="56663" i_stop="56946" i_length="284"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="56947" e_stop="57205" e_length="259"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57206" i_stop="57289" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="57290" e_stop="58690" e_length="1401"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55392" stop="55612"/>
              <exon start="55726" stop="55867"/>
              <exon start="55949" stop="56284"/>
              <exon start="56376" stop="56662"/>
              <exon start="56947" stop="57205"/>
              <exon start="57290" stop="58363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55837" stop="55867"/>
              <exon start="55949" stop="56284"/>
              <exon start="56376" stop="56644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57984" stop="58690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTACACAAAGATCAGGTAGACCTATTAAATCAATATGTAGTAGATTAAAATCAAAGGAAGGTCGGATCAGAGGCAATCTGATGGGTAAAAGAGTAGACTTTTCTGCTCGGACTGTGATTACCCCCGATCCAACTATTAACATTGATCAATTGGGAGTCCCATGGAGTATTGCTCTGAATCTCACTTATCCAGAAACAGTGACACCATATAACATTGAAAG : GTTAAAGGAACTTGTTGAATATGGACCTCATCCACCTCCTGGTAAAACCGGGGCCAAGTATATAATTAGGGACGACGGCCAAAGGCTTGATCTTCGATACTTGAAGAAGAGCAGCGATCAACACCTTGAACTAGGATATAAG : GTTGAGAGGCACTTAAATGATGGAGATTTTGTTCTCTTCAATCGGCAACCCAGTCTACATAAAATGTCTATTATGGGACATAGGATTAAGATCATGCCATACTCAACTTTCCGCTTGAATTTATCTGTCACTTCTCCTTACAATGCTGATTTTGATGGTGACGAAATGAACATGCATGTTCCACAGTCGTTTGAAACCAGAGCAGAGGTTCTGGAGCTTATGATGGTCCCTAAGTGTATTGTTTCACCCCAGGCAAATAGGCCTGTAATGGGTATCGTCCAGGATACCCTTTTAGGTTGCCGCAAAGTTACTAAAAGAGATACCTTTATAGAAAAG : GATGTCTTTATGAACATCTTAATGTGGTGGGAGGATTTTGATGGGAAAGTACCCGCTCCAGTGATTCTTAAACCAAGGCCACTTTGGACTGGAAAGCAAGTGTTTAACCTCATCATACCAAAACAAATAAATCTTTTAAGATACTCCGCATGGCATAATGATTCCGAAAAAGGATACATAACTCCTGGAGATACTCAAGTTAGAATAGAGAAAGGGGAGTTGCTATCTGGTACTCTTTGCAAAAAGACCCTTGGGACGTCCACCGGAAGTCTGATTCATGTTATATG : GGAGGAGGTTGGGCCTGATGCTGCTCGGAAGTTTTTGGGACATACACAGTGGCTTGTTAATTATTGGCTTCTTCAGCAAGCTTTTAGCATCGGGATAGGAGATACAATTGCTGATGCTTCAACGATGGAGAAAATTAATGAAACTATCTCGAATGCAAAAGCCAAAGTCAAAGAACTTATTAAAGCTGCTCAAGAGAAGCTGTTAGAAGCTGAACCAGGGCGAACTATGATGGAATCATTTGAGAACAGAGTGAACCAG : GTGTTAAATAAGGCTCGTGATGATGCTGGAAGCAGTGCAGAGAAGAGTTTATCAGAGAGCAATAATCTTAAAGCTATGGTTACTGCTGGATCGAAGGGAAGTTTTATCAACATATCTCAAATGACTGCCTGTGTGGGGCAACAGAATGTTGAAGGAAAACGTATTCCATTTGGTTTCATAGACCGTACTCTTCCTCATTTTACCAAAGATGATTATGGTCCGGAAAGTCGTGGTTTTGTAGAGAATTCATATCTCCGGGGACTGACCCCGCAAGAGTTCTTCTTCCATGCTATGGGTGGTAGAGAAGGTCTGATTGATACTGCTGTGAAAACTTCTGAGACCGGGTACATTCAGAGGCGGTTAGTGAAGGCCATGGAGGATATCATGGTCAAGTATGACGGCACTGTTAGGAATTCATTGGGGGATGTAATCCAGTTTCTGTATGGGGAAGATGGGATGGATTCTGTTTGGATTGAGACACAGAAGCTGGATTCTCTGAAAGCAAAGAAAGGAACATTTGATGACATGTATGCATATGAGATCGATGATCCTAACTGGAACCCAAGTTACATGTTGCCAGAAGCTGTCGAAGATTTAAAAGGTATTCGGGAGATTCGTAGTGTGTTTGATGCGGAGGTCCAGAAACTTGAAGCTGATAGACATCAGCTTGGGACAGAGATTGCTGTAACGGGTGACAATTCTTGGCCTCTTCCTGTTAACATTCAGAGGCTTGTCTTAAATGCCCAAAAGACATTTAAAATAGATTTCCGGAGGCCCTCTGACATGCATCCGATGGAGATCGTGGAAGCTGTTGATAAGTTACAGGAGAGGCTTAAGGTTGTTCCTGGTGATGATTATCTAAGCATGGAGGCTCAAAAGAATGCTACTCTTTTCTTCAATATCTTGCTCCGTAGTGCCTTGGCTAGTAAAAGGGTTCTGAAGGAGTATAGGCTTAGTCGAGAGGCTTTTGAATGGGTAGTTGGTGAGATAGAGTCTCGCTTCTTGCAATCCCTTGTGGCACCAGGAGAGATGATTGGCTGTGTTGCTGCACAGTCTATTGGTGAACCTGCCACACAGATGACTCTTAATACATTTCATTATGCTGGTGTGAGTGCCAAGAATGTTACTCTTGGTGTGCCAAGGTTGAGGGAGATCATCAATGTTGCCAAGAAAATCAAAACACCTTCTCTTTCTGTGTACTTAAAACCTGAGGTAGGCAAAACAAAAGAGAGGGCCAAAACTGTCCAGTGTGCGTTAGAATATACCACTTTGCGGAGTGTTACTCAAGCCACAGAAGTGTGGTATGATCCTGATCCTATGAGCACCCTTATTGAAGAGGATGTTGAATTTGTCAAGTCATACTATGAAATGCCAGATGAAGAGATTGACCCTGACAAAATC</gDNA_template>
            <first_frame> A  T  Q  R  S  G  R  P  I  K  S  I  C  S  R  L  K  S  K  E  G  R  I  R  G  N  L  M  G  K  R  V  D  F  S  A  R  T  V  I  T  P  D  P  T  I  N  I  D  Q  L  G  V  P  W  S  I  A  L  N  L  T  Y  P  E  T  V  T  P  Y  N  I  E  R :   L  K  E  L  V  E  Y  G  P  H  P  P  P  G  K  T  G  A  K  Y  I  I  R  D  D  G  Q  R  L  D  L  R  Y  L  K  K  S  S  D  Q  H  L  E  L  G  Y  K  :  V  E  R  H  L  N  D  G  D  F  V  L  F  N  R  Q  P  S  L  H  K  M  S  I  M  G  H  R  I  K  I  M  P  Y  S  T  F  R  L  N  L  S  V  T  S  P  Y  N  A  D  F  D  G  D  E  M  N  M  H  V  P  Q  S  F  E  T  R  A  E  V  L  E  L  M  M  V  P  K  C  I  V  S  P  Q  A  N  R  P  V  M  G  I  V  Q  D  T  L  L  G  C  R  K  V  T  K  R  D  T  F  I  E  K  :  D  V  F  M  N  I  L  M  W  W  E  D  F  D  G  K  V  P  A  P  V  I  L  K  P  R  P  L  W  T  G  K  Q  V  F  N  L  I  I  P  K  Q  I  N  L  L  R  Y  S  A  W  H  N  D  S  E  K  G  Y  I  T  P  G  D  T  Q  V  R  I  E  K  G  E  L  L  S  G  T  L  C  K  K  T  L  G  T  S  T  G  S  L  I  H  V  I  W :   E  E  V  G  P  D  A  A  R  K  F  L  G  H  T  Q  W  L  V  N  Y  W  L  L  Q  Q  A  F  S  I  G  I  G  D  T  I  A  D  A  S  T  M  E  K  I  N  E  T  I  S  N  A  K  A  K  V  K  E  L  I  K  A  A  Q  E  K  L  L  E  A  E  P  G  R  T  M  M  E  S  F  E  N  R  V  N  Q  :  V  L  N  K  A  R  D  D  A  G  S  S  A  E  K  S  L  S  E  S  N  N  L  K  A  M  V  T  A  G  S  K  G  S  F  I  N  I  S  Q  M  T  A  C  V  G  Q  Q  N  V  E  G  K  R  I  P  F  G  F  I  D  R  T  L  P  H  F  T  K  D  D  Y  G  P  E  S  R  G  F  V  E  N  S  Y  L  R  G  L  T  P  Q  E  F  F  F  H  A  M  G  G  R  E  G  L  I  D  T  A  V  K  T  S  E  T  G  Y  I  Q  R  R  L  V  K  A  M  E  D  I  M  V  K  Y  D  G  T  V  R  N  S  L  G  D  V  I  Q  F  L  Y  G  E  D  G  M  D  S  V  W  I  E  T  Q  K  L  D  S  L  K  A  K  K  G  T  F  D  D  M  Y  A  Y  E  I  D  D  P  N  W  N  P  S  Y  M  L  P  E  A  V  E  D  L  K  G  I  R  E  I  R  S  V  F  D  A  E  V  Q  K  L  E  A  D  R  H  Q  L  G  T  E  I  A  V  T  G  D  N  S  W  P  L  P  V  N  I  Q  R  L  V  L  N  A  Q  K  T  F  K  I  D  F  R  R  P  S  D  M  H  P  M  E  I  V  E  A  V  D  K  L  Q  E  R  L  K  V  V  P  G  D  D  Y  L  S  M  E  A  Q  K  N  A  T  L  F  F  N  I  L  L  R  S  A  L  A  S  K  R  V  L  K  E  Y  R  L  S  R  E  A  F  E  W  V  V  G  E  I  E  S  R  F  L  Q  S  L  V  A  P  G  E  M  I  G  C  V  A  A  Q  S  I  G  E  P  A  T  Q  M  T  L  N  T  F  H  Y  A  G  V  S  A  K  N  V  T  L  G  V  P  R  L  R  E  I  I  N  V  A  K  K  I  K  T  P  S  L  S  V  Y  L  K  P  E  V  G  K  T  K  E  R  A  K  T  V  Q  C  A  L  E  Y  T  T  L  R  S  V  T  Q  A  T  E  V  W  Y  D  P  D  P  M  S  T  L  I  E  E  D  V  E  F  V  K  S  Y  Y  E  M  P  D  E  E  I  D  P  D  K  I </first_frame>
            <second_frame>  L  H  K  D  Q  V  D  L  L  N  Q  Y  V  V  D  *  N  Q  R  K  V  G  S  E  A  I  *  W  V  K  E  *  T  F  L  L  G  L  *  L  P  P  I  Q  L  L  T  L  I  N  W  E  S  H  G  V  L  L  *  I  S  L  I  Q  K  Q  *  H  H  I  T  L  K   : G  *  R  N  L  L  N  M  D  L  I  H  L  L  V  K  P  G  P  S  I  *  L  G  T  T  A  K  G  L  I  F  D  T  *  R  R  A  A  I  N  T  L  N  *  D  I  R :   L  R  G  T  *  M  M  E  I  L  F  S  S  I  G  N  P  V  Y  I  K  C  L  L  W  D  I  G  L  R  S  C  H  T  Q  L  S  A  *  I  Y  L  S  L  L  L  T  M  L  I  L  M  V  T  K  *  T  C  M  F  H  S  R  L  K  P  E  Q  R  F  W  S  L  *  W  S  L  S  V  L  F  H  P  R  Q  I  G  L  *  W  V  S  S  R  I  P  F  *  V  A  A  K  L  L  K  E  I  P  L  *  K  R :   M  S  L  *  T  S  *  C  G  G  R  I  L  M  G  K  Y  P  L  Q  *  F  L  N  Q  G  H  F  G  L  E  S  K  C  L  T  S  S  Y  Q  N  K  *  I  F  *  D  T  P  H  G  I  M  I  P  K  K  D  T  *  L  L  E  I  L  K  L  E  *  R  K  G  S  C  Y  L  V  L  F  A  K  R  P  L  G  R  P  P  E  V  *  F  M  L  Y   : G  R  R  L  G  L  M  L  L  G  S  F  W  D  I  H  S  G  L  L  I  I  G  F  F  S  K  L  L  A  S  G  *  E  I  Q  L  L  M  L  Q  R  W  R  K  L  M  K  L  S  R  M  Q  K  P  K  S  K  N  L  L  K  L  L  K  R  S  C  *  K  L  N  Q  G  E  L  *  W  N  H  L  R  T  E  *  T  R :   C  *  I  R  L  V  M  M  L  E  A  V  Q  R  R  V  Y  Q  R  A  I  I  L  K  L  W  L  L  L  D  R  R  E  V  L  S  T  Y  L  K  *  L  P  V  W  G  N  R  M  L  K  E  N  V  F  H  L  V  S  *  T  V  L  F  L  I  L  P  K  M  I  M  V  R  K  V  V  V  L  *  R  I  H  I  S  G  D  *  P  R  K  S  S  S  S  M  L  W  V  V  E  K  V  *  L  I  L  L  *  K  L  L  R  P  G  T  F  R  G  G  *  *  R  P  W  R  I  S  W  S  S  M  T  A  L  L  G  I  H  W  G  M  *  S  S  F  C  M  G  K  M  G  W  I  L  F  G  L  R  H  R  S  W  I  L  *  K  Q  R  K  E  H  L  M  T  C  M  H  M  R  S  M  I  L  T  G  T  Q  V  T  C  C  Q  K  L  S  K  I  *  K  V  F  G  R  F  V  V  C  L  M  R  R  S  R  N  L  K  L  I  D  I  S  L  G  Q  R  L  L  *  R  V  T  I  L  G  L  F  L  L  T  F  R  G  L  S  *  M  P  K  R  H  L  K  *  I  S  G  G  P  L  T  C  I  R  W  R  S  W  K  L  L  I  S  Y  R  R  G  L  R  L  F  L  V  M  I  I  *  A  W  R  L  K  R  M  L  L  F  S  S  I  S  C  S  V  V  P  W  L  V  K  G  F  *  R  S  I  G  L  V  E  R  L  L  N  G  *  L  V  R  *  S  L  A  S  C  N  P  L  W  H  Q  E  R  *  L  A  V  L  L  H  S  L  L  V  N  L  P  H  R  *  L  L  I  H  F  I  M  L  V  *  V  P  R  M  L  L  L  V  C  Q  G  *  G  R  S  S  M  L  P  R  K  S  K  H  L  L  F  L  C  T  *  N  L  R  *  A  K  Q  K  R  G  P  K  L  S  S  V  R  *  N  I  P  L  C  G  V  L  L  K  P  Q  K  C  G  M  I  L  I  L  *  A  P  L  L  K  R  M  L  N  L  S  S  H  T  M  K  C  Q  M  K  R  L  T  L  T  K   </second_frame>
            <third_frame>   Y  T  K  I  R  *  T  Y  *  I  N  M  *  *  I  K  I  K  G  R  S  D  Q  R  Q  S  D  G  *  K  S  R  L  F  C  S  D  C  D  Y  P  R  S  N  Y  *  H  *  S  I  G  S  P  M  E  Y  C  S  E  S  H  L  S  R  N  S  D  T  I  *  H  *  K  :  V  K  G  T  C  *  I  W  T  S  S  T  S  W  *  N  R  G  Q  V  Y  N  *  G  R  R  P  K  A  *  S  S  I  L  E  E  E  Q  R  S  T  P  *  T  R  I  *   : G  *  E  A  L  K  *  W  R  F  C  S  L  Q  S  A  T  Q  S  T  *  N  V  Y  Y  G  T  *  D  *  D  H  A  I  L  N  F  P  L  E  F  I  C  H  F  S  L  Q  C  *  F  *  W  *  R  N  E  H  A  C  S  T  V  V  *  N  Q  S  R  G  S  G  A  Y  D  G  P  *  V  Y  C  F  T  P  G  K  *  A  C  N  G  Y  R  P  G  Y  P  F  R  L  P  Q  S  Y  *  K  R  Y  L  Y  R  K   : G  C  L  Y  E  H  L  N  V  V  G  G  F  *  W  E  S  T  R  S  S  D  S  *  T  K  A  T  L  D  W  K  A  S  V  *  P  H  H  T  K  T  N  K  S  F  K  I  L  R  M  A  *  *  F  R  K  R  I  H  N  S  W  R  Y  S  S  *  N  R  E  R  G  V  A  I  W  Y  S  L  Q  K  D  P  W  D  V  H  R  K  S  D  S  C  Y  M  :  G  G  G  W  A  *  C  C  S  E  V  F  G  T  Y  T  V  A  C  *  L  L  A  S  S  A  S  F  *  H  R  D  R  R  Y  N  C  *  C  F  N  D  G  E  N  *  *  N  Y  L  E  C  K  S  Q  S  Q  R  T  Y  *  S  C  S  R  E  A  V  R  S  *  T  R  A  N  Y  D  G  I  I  *  E  Q  S  E  P   : G  V  K  *  G  S  *  *  C  W  K  Q  C  R  E  E  F  I  R  E  Q  *  S  *  S  Y  G  Y  C  W  I  E  G  K  F  Y  Q  H  I  S  N  D  C  L  C  G  A  T  E  C  *  R  K  T  Y  S  I  W  F  H  R  P  Y  S  S  S  F  Y  Q  R  *  L  W  S  G  K  S  W  F  C  R  E  F  I  S  P  G  T  D  P  A  R  V  L  L  P  C  Y  G  W  *  R  R  S  D  *  Y  C  C  E  N  F  *  D  R  V  H  S  E  A  V  S  E  G  H  G  G  Y  H  G  Q  V  *  R  H  C  *  E  F  I  G  G  C  N  P  V  S  V  W  G  R  W  D  G  F  C  L  D  *  D  T  E  A  G  F  S  E  S  K  E  R  N  I  *  *  H  V  C  I  *  D  R  *  S  *  L  E  P  K  L  H  V  A  R  S  C  R  R  F  K  R  Y  S  G  D  S  *  C  V  *  C  G  G  P  E  T  *  S  *  *  T  S  A  W  D  R  D  C  C  N  G  *  Q  F  L  A  S  S  C  *  H  S  E  A  C  L  K  C  P  K  D  I  *  N  R  F  P  E  A  L  *  H  A  S  D  G  D  R  G  S  C  *  *  V  T  G  E  A  *  G  C  S  W  *  *  L  S  K  H  G  G  S  K  E  C  Y  S  F  L  Q  Y  L  A  P  *  C  L  G  *  *  K  G  S  E  G  V  *  A  *  S  R  G  F  *  M  G  S  W  *  D  R  V  S  L  L  A  I  P  C  G  T  R  R  D  D  W  L  C  C  C  T  V  Y  W  *  T  C  H  T  D  D  S  *  Y  I  S  L  C  W  C  E  C  Q  E  C  Y  S  W  C  A  K  V  E  G  D  H  Q  C  C  Q  E  N  Q  N  T  F  S  F  C  V  L  K  T  *  G  R  Q  N  K  R  E  G  Q  N  C  P  V  C  V  R  I  Y  H  F  A  E  C  Y  S  S  H  R  S  V  V  *  S  *  S  Y  E  H  P  Y  *  R  G  C  *  I  C  Q  V  I  L  *  N  A  R  *  R  D  *  P  *  Q  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55392" stop="55612"/>
                    <exon start="55726" stop="55867"/>
                    <exon start="55949" stop="56284"/>
                    <exon start="56376" stop="56662"/>
                    <exon start="56947" stop="57205"/>
                    <exon start="57290" stop="58690"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2646</number_coding_nucleotides>
                  <number_encoded_amino_acids>882</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQINLLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLLEAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEIDPDKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="59454" PGL_stop="61401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59454" e_stop="60369"/>
            <exon e_start="60636" e_stop="60707"/>
            <exon e_start="60890" e_stop="60946"/>
            <exon e_start="61023" e_stop="61401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.798" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59454" e_stop="60369" e_length="916"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.996">
            <gDNA_intron_boundary i_start="60370" i_stop="60635" i_length="266"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60636" e_stop="60707" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.798">
            <gDNA_intron_boundary i_start="60708" i_stop="60889" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60890" e_stop="60946" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.978">
            <gDNA_intron_boundary i_start="60947" i_stop="61022" i_length="76"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="61023" e_stop="61401" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59454" stop="60278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59759" stop="60369"/>
              <exon start="60636" stop="60707"/>
              <exon start="60890" stop="60946"/>
              <exon start="61023" stop="61147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60002" stop="60369"/>
              <exon start="60636" stop="60707"/>
              <exon start="60890" stop="60946"/>
              <exon start="61023" stop="61162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60321" stop="60369"/>
              <exon start="60636" stop="60707"/>
              <exon start="60890" stop="60946"/>
              <exon start="61023" stop="61261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60913" stop="60946"/>
              <exon start="61023" stop="61401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCATTGTATCTCAATGAGGAGATGTTGAAACAAGCTATTGAGATACCATTACCTAGCTACATGGAAGGTGGTCTTGAATTTGGCATGACACCTGGACGTTCACCTATCAGTGGAACCCCATATCACGATGGAATGATGTCTCCAAATTATTTGCTCAGCCCAAATATGCGGATGTCACCGATTACAGATGCTCAATTTTCTCCGTATGTGGGTGGCATGGCTTTCTCTCCCACTTCATCCCCTGGTTACAGTCCATCATCCCCTGGTTACAGCCCATCATCCCCTGGTTACAGCCCGACCTCTCCAGGATACAGTCCCACTTCCCCCGGTTATAGCCCCACATCTCCTGGTTACAGCCCCACTTCCCCCACTTATAGCCCCAGCTCCCCTGGCTACAGCCCGACAAGTCCAGCATATTCTCCAACCAGTCCTTCATACTCACCCACATCACCCAGTTATAGTCCAACATCTCCAAGCTATAGCCCAACCTCGCCTAGCTACAGCCCAACATCACCTAGCTACAGCCCTACTTCTCCAGCGTACAGCCCCACTTCTCCGGCCTACAGCCCTACTTCTCCGGCCTACAGCCCCACTTCTCCATCTTACAGCCCCACTTCGCCATCTTACAGCCCCACTTCACCTTCTTACAGCCCCACATCGCCTTCATATAGCCCCACCTCACCCTCTTATAGTCCGACTTCTCCATCATATAGTCCGACTTCTCCTGCTTACAGTCCTACCTCCCCTGGTTACAGCCCAACATCTCCCAGCTATAGCCCAACATCACCATCCTACAGTCCAACATCACCAAGTTACAATCCCTCGGCGAGATACAGCCCCTCCCTTGCGTATTCGCCAACTAGCCCGAAGCTGTCTCCTTCTAGTCCATACAGCCCGTCATCTCCAAGTTACAG : TCCCACATCACCATCGTACTCTCCAACATCTCCATCATATTCTCCTTCAAGCCCAACCTATAGTCCCAGCAG : CCCATACAACAACTCAGGTACAAGCCCAGATTATAGTCCCAGTTCTCCCCAGTACAG : TCCAAGTGCAGGGTACTCACCAAGTGCTCCTGGGTATTCACCATCATCTACTAGCCAGTACACCCCACGTGTGAGTGAGAGAGACAACAGAAGTGTCAAAGATGACAAGGCTGGGTGATCATTAGGGAGGGAACGAAGTTGTATTTACTTGAAACTTTAATCTTTCAGTTGCTAAACTGGCTCATTAGTCATTACTGTGCTTTCTGAAGGCATAAGATTGCTGTATAATATTTTTCGAAGAACACAGGCTTTGTTCTAGTTTCTGGGTTTCTCTTTTCCAGTCTAGAATACTTTGGGATTATATTATATAAAGATGCAGAAAACATGGTTCCTTCTTTTAAAGTAGTGTGAGAACTTAGGTGTTTTCGAATAAAGGAAA</gDNA_template>
            <first_frame> V  H  C  I  S  M  R  R  C  *  N  K  L  L  R  Y  H  Y  L  A  T  W  K  V  V  L  N  L  A  *  H  L  D  V  H  L  S  V  E  P  H  I  T  M  E  *  C  L  Q  I  I  C  S  A  Q  I  C  G  C  H  R  L  Q  M  L  N  F  L  R  M  W  V  A  W  L  S  L  P  L  H  P  L  V  T  V  H  H  P  L  V  T  A  H  H  P  L  V  T  A  R  P  L  Q  D  T  V  P  L  P  P  V  I  A  P  H  L  L  V  T  A  P  L  P  P  L  I  A  P  A  P  L  A  T  A  R  Q  V  Q  H  I  L  Q  P  V  L  H  T  H  P  H  H  P  V  I  V  Q  H  L  Q  A  I  A  Q  P  R  L  A  T  A  Q  H  H  L  A  T  A  L  L  L  Q  R  T  A  P  L  L  R  P  T  A  L  L  L  R  P  T  A  P  L  L  H  L  T  A  P  L  R  H  L  T  A  P  L  H  L  L  T  A  P  H  R  L  H  I  A  P  P  H  P  L  I  V  R  L  L  H  H  I  V  R  L  L  L  L  T  V  L  P  P  L  V  T  A  Q  H  L  P  A  I  A  Q  H  H  H  P  T  V  Q  H  H  Q  V  T  I  P  R  R  D  T  A  P  P  L  R  I  R  Q  L  A  R  S  C  L  L  L  V  H  T  A  R  H  L  Q  V  T   : V  P  H  H  H  R  T  L  Q  H  L  H  H  I  L  L  Q  A  Q  P  I  V  P  A   : A  H  T  T  T  Q  V  Q  A  Q  I  I  V  P  V  L  P  S  T   : V  Q  V  Q  G  T  H  Q  V  L  L  G  I  H  H  H  L  L  A  S  T  P  H  V  *  V  R  E  T  T  E  V  S  K  M  T  R  L  G  D  H  *  G  G  N  E  V  V  F  T  *  N  F  N  L  S  V  A  K  L  A  H  *  S  L  L  C  F  L  K  A  *  D  C  C  I  I  F  F  E  E  H  R  L  C  S  S  F  W  V  S  L  F  Q  S  R  I  L  W  D  Y  I  I  *  R  C  R  K  H  G  S  F  F  *  S  S  V  R  T  *  V  F  S  N  K  G   </first_frame>
            <second_frame>  F  I  V  S  Q  *  G  D  V  E  T  S  Y  *  D  T  I  T  *  L  H  G  R  W  S  *  I  W  H  D  T  W  T  F  T  Y  Q  W  N  P  I  S  R  W  N  D  V  S  K  L  F  A  Q  P  K  Y  A  D  V  T  D  Y  R  C  S  I  F  S  V  C  G  W  H  G  F  L  S  H  F  I  P  W  L  Q  S  I  I  P  W  L  Q  P  I  I  P  W  L  Q  P  D  L  S  R  I  Q  S  H  F  P  R  L  *  P  H  I  S  W  L  Q  P  H  F  P  H  L  *  P  Q  L  P  W  L  Q  P  D  K  S  S  I  F  S  N  Q  S  F  I  L  T  H  I  T  Q  L  *  S  N  I  S  K  L  *  P  N  L  A  *  L  Q  P  N  I  T  *  L  Q  P  Y  F  S  S  V  Q  P  H  F  S  G  L  Q  P  Y  F  S  G  L  Q  P  H  F  S  I  L  Q  P  H  F  A  I  L  Q  P  H  F  T  F  L  Q  P  H  I  A  F  I  *  P  H  L  T  L  L  *  S  D  F  S  I  I  *  S  D  F  S  C  L  Q  S  Y  L  P  W  L  Q  P  N  I  S  Q  L  *  P  N  I  T  I  L  Q  S  N  I  T  K  L  Q  S  L  G  E  I  Q  P  L  P  C  V  F  A  N  *  P  E  A  V  S  F  *  S  I  Q  P  V  I  S  K  L  Q  :  S  H  I  T  I  V  L  S  N  I  S  I  I  F  S  F  K  P  N  L  *  S  Q  Q  :  P  I  Q  Q  L  R  Y  K  P  R  L  *  S  Q  F  S  P  V  Q  :  S  K  C  R  V  L  T  K  C  S  W  V  F  T  I  I  Y  *  P  V  H  P  T  C  E  *  E  R  Q  Q  K  C  Q  R  *  Q  G  W  V  I  I  R  E  G  T  K  L  Y  L  L  E  T  L  I  F  Q  L  L  N  W  L  I  S  H  Y  C  A  F  *  R  H  K  I  A  V  *  Y  F  S  K  N  T  G  F  V  L  V  S  G  F  L  F  S  S  L  E  Y  F  G  I  I  L  Y  K  D  A  E  N  M  V  P  S  F  K  V  V  *  E  L  R  C  F  R  I  K  E  </second_frame>
            <third_frame>   S  L  Y  L  N  E  E  M  L  K  Q  A  I  E  I  P  L  P  S  Y  M  E  G  G  L  E  F  G  M  T  P  G  R  S  P  I  S  G  T  P  Y  H  D  G  M  M  S  P  N  Y  L  L  S  P  N  M  R  M  S  P  I  T  D  A  Q  F  S  P  Y  V  G  G  M  A  F  S  P  T  S  S  P  G  Y  S  P  S  S  P  G  Y  S  P  S  S  P  G  Y  S  P  T  S  P  G  Y  S  P  T  S  P  G  Y  S  P  T  S  P  G  Y  S  P  T  S  P  T  Y  S  P  S  S  P  G  Y  S  P  T  S  P  A  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  A  Y  S  P  T  S  P  A  Y  S  P  T  S  P  A  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  A  Y  S  P  T  S  P  G  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  T  S  P  S  Y  N  P  S  A  R  Y  S  P  S  L  A  Y  S  P  T  S  P  K  L  S  P  S  S  P  Y  S  P  S  S  P  S  Y  S :   P  T  S  P  S  Y  S  P  T  S  P  S  Y  S  P  S  S  P  T  Y  S  P  S  S :   P  Y  N  N  S  G  T  S  P  D  Y  S  P  S  S  P  Q  Y  S :   P  S  A  G  Y  S  P  S  A  P  G  Y  S  P  S  S  T  S  Q  Y  T  P  R  V  S  E  R  D  N  R  S  V  K  D  D  K  A  G  *  S  L  G  R  E  R  S  C  I  Y  L  K  L  *  S  F  S  C  *  T  G  S  L  V  I  T  V  L  S  E  G  I  R  L  L  Y  N  I  F  R  R  T  Q  A  L  F  *  F  L  G  F  S  F  P  V  *  N  T  L  G  L  Y  Y  I  K  M  Q  K  T  W  F  L  L  L  K  *  C  E  N  L  G  V  F  E  *  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59456" stop="60369"/>
                    <exon start="60636" stop="60707"/>
                    <exon start="60890" stop="60946"/>
                    <exon start="61023" stop="61140"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1158</number_coding_nucleotides>
                  <number_encoded_amino_acids>386</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSARYSPSLAYSPTSPKLSPSSPYSPSSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYNNSGTSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPRVSERDNRSVKDDKAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="63545" PGL_stop="71551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63545" e_stop="64650"/>
            <exon e_start="64922" e_stop="65038"/>
            <exon e_start="65569" e_stop="65763"/>
            <exon e_start="67413" e_stop="67715"/>
            <exon e_start="67796" e_stop="67864"/>
            <exon e_start="67996" e_stop="68143"/>
            <exon e_start="68603" e_stop="68751"/>
            <exon e_start="69410" e_stop="69568"/>
            <exon e_start="70788" e_stop="70988"/>
            <exon e_start="71084" e_stop="71551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63545" e_stop="64650" e_length="1106"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.925">
            <gDNA_intron_boundary i_start="64651" i_stop="64921" i_length="271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64922" e_stop="65038" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.956">
            <gDNA_intron_boundary i_start="65039" i_stop="65568" i_length="530"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65569" e_stop="65763" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65764" i_stop="67412" i_length="1649"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="67413" e_stop="67715" e_length="303"/>
          </exon>
          <intron i_serial="4" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67716" i_stop="67795" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67796" e_stop="67864" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="67865" i_stop="67995" i_length="131"/>
          </intron>
          <exon e_serial="6" e_score="0.979">
            <gDNA_exon_boundary e_start="67996" e_stop="68143" e_length="148"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68144" i_stop="68602" i_length="459"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68603" e_stop="68751" e_length="149"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="68752" i_stop="69409" i_length="658"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="69410" e_stop="69568" e_length="159"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.790">
            <gDNA_intron_boundary i_start="69569" i_stop="70787" i_length="1219"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="70788" e_stop="70988" e_length="201"/>
          </exon>
          <intron i_serial="9" don_prob="0.831" acc_prob="0.970">
            <gDNA_intron_boundary i_start="70989" i_stop="71083" i_length="95"/>
          </intron>
          <exon e_serial="10" e_score="0.904">
            <gDNA_exon_boundary e_start="71084" e_stop="71551" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63545" stop="64226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63553" stop="64351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63695" stop="64393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63708" stop="64244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63709" stop="64286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64167" stop="64589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64467" stop="64650"/>
              <exon start="64922" stop="65038"/>
              <exon start="65569" stop="65702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65654" stop="65763"/>
              <exon start="67413" stop="67715"/>
              <exon start="67796" stop="67864"/>
              <exon start="67996" stop="68141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68045" stop="68143"/>
              <exon start="68603" stop="68751"/>
              <exon start="69410" stop="69568"/>
              <exon start="70788" stop="70988"/>
              <exon start="71084" stop="71295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70945" stop="70988"/>
              <exon start="71084" stop="71551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTCCACCGCTATGGTGTCACCTGTTCGGAGTCGTAAAATCTCAGCAAAAGCCAACAACTTACAGTTATTCATCACAACGTGACGCCACCCATTTTTCTCTTCTATCTTCAAACACAACCTTTCTTCTTCTTCTCTGTGAAGATGGCAGAAAATTCATCTCAGGAAAACTTCATCTGTTTACATGGAGATTTGGAGCTTCACATCATTCAAGCCCGTCATTTACCCAACATGGACTTAACTTCTGAGCGTATACGCCGCTGCTTCACAGCCTGTGATGTCTGCCGGAAACCTCAAACTGGATCCACTGCCGACGACGGAAACGGCGAACTACCCAATGTGAAAAGCACCGACCAGAAAATCCACCACCGGAGTATAATCACTAGTGACCCATATGTTGCTGTGTGTGCACCCCATACCGCTCTTGCTCGTACACGTGTTATACCCAATTCACAAAACCCTGTTTGGGATGAGCATTTCCGTATCCCTTTAGCACACCCTATGGACTGCTTGGATTTTCGTGTTAAAGATGATGATGTTTTCGGTGCTCAAGTTATGGGTAAAGTTACAATCCCGGCGGAAAAGATAGCCTCCGGTGAGGTGGTTTCCGGCTGGTTTCCCGTCATTGGCGCTTCAGGGAAATCTCCAAAACCCGATACGGCTCTCCGGTTATGGATGAAATTCGTTCCATATGATACAAACCCATTGTATAAGCGAGGAATTGCTTCAGATCCTCAGTATTTAGGGGTAAGGAATACGTACTTCCCATTGAGAAAAGGGAGTTCCGTGAAGCTATACCAAGATGCTCACGTTAGCGATAAGTTTAAGCTGCCGGAAATCCAGTTGGAAAACAATACAACCTTTGAACACAACAAATGCTGGGAAGATATATGTTATGCAATTACAGAGGCTCATCACTTGATTTACATTGTTGGGTGGTCTGTTTTTCACAAAGTCAAGTTAGTTCGAGAGCCCACCAGGCCATTGCCGCGCGGCGGTGACTTGACACTTGGTGAATTACTTAAATATAAGTCCCAAGAGGGGGTGCGGGTTCTGTTGTTAGTTTGGGATGATAAAACTTCCCATGATAAGTTCTTTATTAACACG : GCAGGAGTAATGGGAACTCACGACGAGGAAACCAGGAAGTTTTTTAAGCATTCCTCTGTAATATGCGTTTTGTCACCACGTTATGCTAGCAGTAAGCTCAGCCTTATCAAGCAACAG : GTAGTTGGAACCATGTTTACACACCATCAGAAGTGTGTTCTGGTTGATACGCAGGCACCTGGTAATAATAGAAAAGTAACAGCATTCTTAGGAGGTCTGGATCTCTGCGATGGTCGATATGATACACCTGAACATCGCTTATTCCATGACCTTGACACTGTATTTAAAGACGACGTTCATCAGCCTACATTTCCT : GCAGGGACCAAGGCTCCAAGGCAACCATGGCATGATTTGCATTGCAGAATTGATGGACCTGCTGTATATGATGTGCTTATAAATTTTGCTCAACGATGGAGGAAAGCGACAAAGTGGAGGGAATTCAAGTTCTTTAAGAAAACAATGTCTCATTGGCATGATGATGCTATGCTAAAAATTGAGCGTATCTCATGGATACTCAGCCCTGCTTTTGCTGTTTTAAAGGATAGTACTGCAATCCCAGAGGATGATCCTAAACTACATGTATATGGGGAAGATCATTCAGAAAATTGGCATGTACAG : ATCTTCCGTTCCATTGATTCTGGTTCAGTGCAGGGCTTTCCCAAGACGATTGACGTTGCGCAGGCACAG : AACCTTGTCTGCTCAAAAAATCTGATGGTAGATAAAAGCATTGAAGCCGCATATATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGCAG : GAGCTGATCATCTGATACCGATGGAATTGGCACTGAAAATCACTAGTAAAATTAGAGCTAGGGAACGATTTTGTGTATATGTTGTCGTGCCCATGTGGCCTGAAGGGGACCCCAAGTCAATCACTATGCAGGAAATACTCTTCTGGCAG : AGCCAGACAATACAGATGATGTATCAAGTTATTGCGACAGAGCTCAAATCGATGCAGATTTTGGACTCACATCCACAAGATTATTTAAATTTCTACTGCCTTGGTAACCGTGAGGAAATTCCAGGCTCTATTGCTCAATCTTCTGGTAATGGTGATAAG : GTCTCAGACTCATATAAGTTTCAGCGTTTCATGATATATGTTCATGCCAAAGGAATGATAGTGGATGATGAGTATGTTATAATGGGCTCTGCCAACATAAATCAACGATCCTTAGCTGGGTCGAAAGATACAGAGATAGCTATGGGTGCCTACCAGCCTCATTATGCATGGACAGAAAAGCAAAGGCGTCCACGGGGACAG : ATCTATGGATACAGAATGTCCCTATGGGCAGAACACCTTGGGAGGATAGAAGAATGTTTCAAGGAACCAGAGGCGCTAACATGCGTGAGGAAGGTGAATGAGGTTGCTGAAGGAAACTGGAAGAGTTACACAGCTGAAAAGTTCACTCAACTACATGGACATCTTCTCAAGTATCCAATACATGTAGGCGCGGACGGGAAAGTAGGTCCATTAGCTGAATATGAAAATTTCCCAGATGTAGGAGGTAGAATTCTGGGAAATCATGCCCCTACTATCCCAGATGTTTTGACTACATAGTCAGTCCTCAATAATTAACACGATTGTGAGTGTTTGGACACTCTGAAAATATGTAGCTGCAAGATCCTTATTAGTCAATTTTGTACATTTGTTCTATGTTGTACAATAGAGGGTGAAAAAAAGGATAGAAATGATATGATTGTGGGCTTGTATTTGTGCTGAATATTGTGG</gDNA_template>
            <first_frame> T  S  T  A  M  V  S  P  V  R  S  R  K  I  S  A  K  A  N  N  L  Q  L  F  I  T  T  *  R  H  P  F  F  S  S  I  F  K  H  N  L  S  S  S  S  L  *  R  W  Q  K  I  H  L  R  K  T  S  S  V  Y  M  E  I  W  S  F  T  S  F  K  P  V  I  Y  P  T  W  T  *  L  L  S  V  Y  A  A  A  S  Q  P  V  M  S  A  G  N  L  K  L  D  P  L  P  T  T  E  T  A  N  Y  P  M  *  K  A  P  T  R  K  S  T  T  G  V  *  S  L  V  T  H  M  L  L  C  V  H  P  I  P  L  L  L  V  H  V  L  Y  P  I  H  K  T  L  F  G  M  S  I  S  V  S  L  *  H  T  L  W  T  A  W  I  F  V  L  K  M  M  M  F  S  V  L  K  L  W  V  K  L  Q  S  R  R  K  R  *  P  P  V  R  W  F  P  A  G  F  P  S  L  A  L  Q  G  N  L  Q  N  P  I  R  L  S  G  Y  G  *  N  S  F  H  M  I  Q  T  H  C  I  S  E  E  L  L  Q  I  L  S  I  *  G  *  G  I  R  T  S  H  *  E  K  G  V  P  *  S  Y  T  K  M  L  T  L  A  I  S  L  S  C  R  K  S  S  W  K  T  I  Q  P  L  N  T  T  N  A  G  K  I  Y  V  M  Q  L  Q  R  L  I  T  *  F  T  L  L  G  G  L  F  F  T  K  S  S  *  F  E  S  P  P  G  H  C  R  A  A  V  T  *  H  L  V  N  Y  L  N  I  S  P  K  R  G  C  G  F  C  C  *  F  G  M  I  K  L  P  M  I  S  S  L  L  T  R :   Q  E  *  W  E  L  T  T  R  K  P  G  S  F  L  S  I  P  L  *  Y  A  F  C  H  H  V  M  L  A  V  S  S  A  L  S  S  N  R :   *  L  E  P  C  L  H  T  I  R  S  V  F  W  L  I  R  R  H  L  V  I  I  E  K  *  Q  H  S  *  E  V  W  I  S  A  M  V  D  M  I  H  L  N  I  A  Y  S  M  T  L  T  L  Y  L  K  T  T  F  I  S  L  H  F  L :   Q  G  P  R  L  Q  G  N  H  G  M  I  C  I  A  E  L  M  D  L  L  Y  M  M  C  L  *  I  L  L  N  D  G  G  K  R  Q  S  G  G  N  S  S  S  L  R  K  Q  C  L  I  G  M  M  M  L  C  *  K  L  S  V  S  H  G  Y  S  A  L  L  L  L  F  *  R  I  V  L  Q  S  Q  R  M  I  L  N  Y  M  Y  M  G  K  I  I  Q  K  I  G  M  Y  R :   S  S  V  P  L  I  L  V  Q  C  R  A  F  P  R  R  L  T  L  R  R  H  R :   T  L  S  A  Q  K  I  *  W  *  I  K  A  L  K  P  H  I  F  R  Q  *  D  Q  L  S  I  S  Y  I  L  K  I  S  I  F  L  D  R  H  M  L  G  N  H  T  K  M  Q  :  E  L  I  I  *  Y  R  W  N  W  H  *  K  S  L  V  K  L  E  L  G  N  D  F  V  Y  M  L  S  C  P  C  G  L  K  G  T  P  S  Q  S  L  C  R  K  Y  S  S  G  R :   A  R  Q  Y  R  *  C  I  K  L  L  R  Q  S  S  N  R  C  R  F  W  T  H  I  H  K  I  I  *  I  S  T  A  L  V  T  V  R  K  F  Q  A  L  L  L  N  L  L  V  M  V  I  R :   S  Q  T  H  I  S  F  S  V  S  *  Y  M  F  M  P  K  E  *  *  W  M  M  S  M  L  *  W  A  L  P  T  *  I  N  D  P  *  L  G  R  K  I  Q  R  *  L  W  V  P  T  S  L  I  M  H  G  Q  K  S  K  G  V  H  G  D  R :   S  M  D  T  E  C  P  Y  G  Q  N  T  L  G  G  *  K  N  V  S  R  N  Q  R  R  *  H  A  *  G  R  *  M  R  L  L  K  E  T  G  R  V  T  Q  L  K  S  S  L  N  Y  M  D  I  F  S  S  I  Q  Y  M  *  A  R  T  G  K  *  V  H  *  L  N  M  K  I  S  Q  M  *  E  V  E  F  W  E  I  M  P  L  L  S  Q  M  F  *  L  H  S  Q  S  S  I  I  N  T  I  V  S  V  W  T  L  *  K  Y  V  A  A  R  S  L  L  V  N  F  V  H  L  F  Y  V  V  Q  *  R  V  K  K  R  I  E  M  I  *  L  W  A  C  I  C  A  E  Y  C   </first_frame>
            <second_frame>  P  P  P  L  W  C  H  L  F  G  V  V  K  S  Q  Q  K  P  T  T  Y  S  Y  S  S  Q  R  D  A  T  H  F  S  L  L  S  S  N  T  T  F  L  L  L  L  C  E  D  G  R  K  F  I  S  G  K  L  H  L  F  T  W  R  F  G  A  S  H  H  S  S  P  S  F  T  Q  H  G  L  N  F  *  A  Y  T  P  L  L  H  S  L  *  C  L  P  E  T  S  N  W  I  H  C  R  R  R  K  R  R  T  T  Q  C  E  K  H  R  P  E  N  P  P  P  E  Y  N  H  *  *  P  I  C  C  C  V  C  T  P  Y  R  S  C  S  Y  T  C  Y  T  Q  F  T  K  P  C  L  G  *  A  F  P  Y  P  F  S  T  P  Y  G  L  L  G  F  S  C  *  R  *  *  C  F  R  C  S  S  Y  G  *  S  Y  N  P  G  G  K  D  S  L  R  *  G  G  F  R  L  V  S  R  H  W  R  F  R  E  I  S  K  T  R  Y  G  S  P  V  M  D  E  I  R  S  I  *  Y  K  P  I  V  *  A  R  N  C  F  R  S  S  V  F  R  G  K  E  Y  V  L  P  I  E  K  R  E  F  R  E  A  I  P  R  C  S  R  *  R  *  V  *  A  A  G  N  P  V  G  K  Q  Y  N  L  *  T  Q  Q  M  L  G  R  Y  M  L  C  N  Y  R  G  S  S  L  D  L  H  C  W  V  V  C  F  S  Q  S  Q  V  S  S  R  A  H  Q  A  I  A  A  R  R  *  L  D  T  W  *  I  T  *  I  *  V  P  R  G  G  A  G  S  V  V  S  L  G  *  *  N  F  P  *  *  V  L  Y  *  H   : G  R  S  N  G  N  S  R  R  G  N  Q  E  V  F  *  A  F  L  C  N  M  R  F  V  T  T  L  C  *  Q  *  A  Q  P  Y  Q  A  T   : G  S  W  N  H  V  Y  T  P  S  E  V  C  S  G  *  Y  A  G  T  W  *  *  *  K  S  N  S  I  L  R  R  S  G  S  L  R  W  S  I  *  Y  T  *  T  S  L  I  P  *  P  *  H  C  I  *  R  R  R  S  S  A  Y  I  S   : C  R  D  Q  G  S  K  A  T  M  A  *  F  A  L  Q  N  *  W  T  C  C  I  *  C  A  Y  K  F  C  S  T  M  E  E  S  D  K  V  E  G  I  Q  V  L  *  E  N  N  V  S  L  A  *  *  C  Y  A  K  N  *  A  Y  L  M  D  T  Q  P  C  F  C  C  F  K  G  *  Y  C  N  P  R  G  *  S  *  T  T  C  I  W  G  R  S  F  R  K  L  A  C  T   : D  L  P  F  H  *  F  W  F  S  A  G  L  S  Q  D  D  *  R  C  A  G  T   : E  P  C  L  L  K  K  S  D  G  R  *  K  H  *  S  R  I  Y  S  G  N  K  I  S  S  A  F  H  I  Y  *  K  S  V  F  S  W  I  V  I  C  L  G  I  I  Q  R  C  R :   S  *  S  S  D  T  D  G  I  G  T  E  N  H  *  *  N  *  S  *  G  T  I  L  C  I  C  C  R  A  H  V  A  *  R  G  P  Q  V  N  H  Y  A  G  N  T  L  L  A   : E  P  D  N  T  D  D  V  S  S  Y  C  D  R  A  Q  I  D  A  D  F  G  L  T  S  T  R  L  F  K  F  L  L  P  W  *  P  *  G  N  S  R  L  Y  C  S  I  F  W  *  W  *  *   : G  L  R  L  I  *  V  S  A  F  H  D  I  C  S  C  Q  R  N  D  S  G  *  *  V  C  Y  N  G  L  C  Q  H  K  S  T  I  L  S  W  V  E  R  Y  R  D  S  Y  G  C  L  P  A  S  L  C  M  D  R  K  A  K  A  S  T  G  T   : D  L  W  I  Q  N  V  P  M  G  R  T  P  W  E  D  R  R  M  F  Q  G  T  R  G  A  N  M  R  E  E  G  E  *  G  C  *  R  K  L  E  E  L  H  S  *  K  V  H  S  T  T  W  T  S  S  Q  V  S  N  T  C  R  R  G  R  E  S  R  S  I  S  *  I  *  K  F  P  R  C  R  R  *  N  S  G  K  S  C  P  Y  Y  P  R  C  F  D  Y  I  V  S  P  Q  *  L  T  R  L  *  V  F  G  H  S  E  N  M  *  L  Q  D  P  Y  *  S  I  L  Y  I  C  S  M  L  Y  N  R  G  *  K  K  G  *  K  *  Y  D  C  G  L  V  F  V  L  N  I  V  </second_frame>
            <third_frame>   L  H  R  Y  G  V  T  C  S  E  S  *  N  L  S  K  S  Q  Q  L  T  V  I  H  H  N  V  T  P  P  I  F  L  F  Y  L  Q  T  Q  P  F  F  F  F  S  V  K  M  A  E  N  S  S  Q  E  N  F  I  C  L  H  G  D  L  E  L  H  I  I  Q  A  R  H  L  P  N  M  D  L  T  S  E  R  I  R  R  C  F  T  A  C  D  V  C  R  K  P  Q  T  G  S  T  A  D  D  G  N  G  E  L  P  N  V  K  S  T  D  Q  K  I  H  H  R  S  I  I  T  S  D  P  Y  V  A  V  C  A  P  H  T  A  L  A  R  T  R  V  I  P  N  S  Q  N  P  V  W  D  E  H  F  R  I  P  L  A  H  P  M  D  C  L  D  F  R  V  K  D  D  D  V  F  G  A  Q  V  M  G  K  V  T  I  P  A  E  K  I  A  S  G  E  V  V  S  G  W  F  P  V  I  G  A  S  G  K  S  P  K  P  D  T  A  L  R  L  W  M  K  F  V  P  Y  D  T  N  P  L  Y  K  R  G  I  A  S  D  P  Q  Y  L  G  V  R  N  T  Y  F  P  L  R  K  G  S  S  V  K  L  Y  Q  D  A  H  V  S  D  K  F  K  L  P  E  I  Q  L  E  N  N  T  T  F  E  H  N  K  C  W  E  D  I  C  Y  A  I  T  E  A  H  H  L  I  Y  I  V  G  W  S  V  F  H  K  V  K  L  V  R  E  P  T  R  P  L  P  R  G  G  D  L  T  L  G  E  L  L  K  Y  K  S  Q  E  G  V  R  V  L  L  L  V  W  D  D  K  T  S  H  D  K  F  F  I  N  T  :  A  G  V  M  G  T  H  D  E  E  T  R  K  F  F  K  H  S  S  V  I  C  V  L  S  P  R  Y  A  S  S  K  L  S  L  I  K  Q  Q  :  V  V  G  T  M  F  T  H  H  Q  K  C  V  L  V  D  T  Q  A  P  G  N  N  R  K  V  T  A  F  L  G  G  L  D  L  C  D  G  R  Y  D  T  P  E  H  R  L  F  H  D  L  D  T  V  F  K  D  D  V  H  Q  P  T  F  P  :  A  G  T  K  A  P  R  Q  P  W  H  D  L  H  C  R  I  D  G  P  A  V  Y  D  V  L  I  N  F  A  Q  R  W  R  K  A  T  K  W  R  E  F  K  F  F  K  K  T  M  S  H  W  H  D  D  A  M  L  K  I  E  R  I  S  W  I  L  S  P  A  F  A  V  L  K  D  S  T  A  I  P  E  D  D  P  K  L  H  V  Y  G  E  D  H  S  E  N  W  H  V  Q  :  I  F  R  S  I  D  S  G  S  V  Q  G  F  P  K  T  I  D  V  A  Q  A  Q  :  N  L  V  C  S  K  N  L  M  V  D  K  S  I  E  A  A  Y  I  Q  A  I  R  S  A  Q  H  F  I  Y  I  E  N  Q  Y  F  L  G  S  S  Y  A  W  E  S  Y  K  D  A   : G  A  D  H  L  I  P  M  E  L  A  L  K  I  T  S  K  I  R  A  R  E  R  F  C  V  Y  V  V  V  P  M  W  P  E  G  D  P  K  S  I  T  M  Q  E  I  L  F  W  Q  :  S  Q  T  I  Q  M  M  Y  Q  V  I  A  T  E  L  K  S  M  Q  I  L  D  S  H  P  Q  D  Y  L  N  F  Y  C  L  G  N  R  E  E  I  P  G  S  I  A  Q  S  S  G  N  G  D  K  :  V  S  D  S  Y  K  F  Q  R  F  M  I  Y  V  H  A  K  G  M  I  V  D  D  E  Y  V  I  M  G  S  A  N  I  N  Q  R  S  L  A  G  S  K  D  T  E  I  A  M  G  A  Y  Q  P  H  Y  A  W  T  E  K  Q  R  R  P  R  G  Q  :  I  Y  G  Y  R  M  S  L  W  A  E  H  L  G  R  I  E  E  C  F  K  E  P  E  A  L  T  C  V  R  K  V  N  E  V  A  E  G  N  W  K  S  Y  T  A  E  K  F  T  Q  L  H  G  H  L  L  K  Y  P  I  H  V  G  A  D  G  K  V  G  P  L  A  E  Y  E  N  F  P  D  V  G  G  R  I  L  G  N  H  A  P  T  I  P  D  V  L  T  T  *  S  V  L  N  N  *  H  D  C  E  C  L  D  T  L  K  I  C  S  C  K  I  L  I  S  Q  F  C  T  F  V  L  C  C  T  I  E  G  E  K  K  D  R  N  D  M  I  V  G  L  Y  L  C  *  I  L  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63583" stop="64650"/>
                    <exon start="64922" stop="65038"/>
                    <exon start="65569" stop="65763"/>
                    <exon start="67413" stop="67715"/>
                    <exon start="67796" stop="67864"/>
                    <exon start="67996" stop="68143"/>
                    <exon start="68603" stop="68751"/>
                    <exon start="69410" stop="69568"/>
                    <exon start="70788" stop="70988"/>
                    <exon start="71084" stop="71380"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2703</number_coding_nucleotides>
                  <number_encoded_amino_acids>901</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSKSQQLTVIHHNVTPPIFLFYLQTQPFFFFSVKMAENSSQENFICLHGDLELHIIQARHLPNMDLTSERIRRCFTACDVCRKPQTGSTADDGNGELPNVKSTDQKIHHRSIITSDPYVAVCAPHTALARTRVIPNSQNPVWDEHFRIPLAHPMDCLDFRVKDDDVFGAQVMGKVTIPAEKIASGEVVSGWFPVIGASGKSPKPDTALRLWMKFVPYDTNPLYKRGIASDPQYLGVRNTYFPLRKGSSVKLYQDAHVSDKFKLPEIQLENNTTFEHNKCWEDICYAITEAHHLIYIVGWSVFHKVKLVREPTRPLPRGGDLTLGELLKYKSQEGVRVLLLVWDDKTSHDKFFINTAGVMGTHDEETRKFFKHSSVICVLSPRYASSKLSLIKQQVVGTMFTHHQKCVLVDTQAPGNNRKVTAFLGGLDLCDGRYDTPEHRLFHDLDTVFKDDVHQPTFPAGTKAPRQPWHDLHCRIDGPAVYDVLINFAQRWRKATKWREFKFFKKTMSHWHDDAMLKIERISWILSPAFAVLKDSTAIPEDDPKLHVYGEDHSENWHVQIFRSIDSGSVQGFPKTIDVAQAQNLVCSKNLMVDKSIEAAYIQAIRSAQHFIYIENQYFLGSSYAWESYKDAGADHLIPMELALKITSKIRARERFCVYVVVPMWPEGDPKSITMQEILFWQSQTIQMMYQVIATELKSMQILDSHPQDYLNFYCLGNREEIPGSIAQSSGNGDKVSDSYKFQRFMIYVHAKGMIVDDEYVIMGSANINQRSLAGSKDTEIAMGAYQPHYAWTEKQRRPRGQIYGYRMSLWAEHLGRIEECFKEPEALTCVRKVNEVAEGNWKSYTAEKFTQLHGHLLKYPIHVGADGKVGPLAEYENFPDVGGRILGNHAPTIPDVLTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67602" e_stop="67715"/>
            <exon e_start="67796" e_stop="68143"/>
            <exon e_start="68603" e_stop="68843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67602" e_stop="67715" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67716" i_stop="67795" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67796" e_stop="68143" e_length="348"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68144" i_stop="68602" i_length="459"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="68603" e_stop="68843" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67602" stop="67715"/>
              <exon start="67796" stop="68143"/>
              <exon start="68603" stop="68843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATGGATACTCAGCCCTGCTTTTGCTGTTTTAAAGGATAGTACTGCAATCCCAGAGGATGATCCTAAACTACATGTATATGGGGAAGATCATTCAGAAAATTGGCATGTACAG : ATCTTCCGTTCCATTGATTCTGGTTCAGTGCAGGGCTTTCCCAAGACGATTGACGTTGCGCAGGCACAGGCAAGGAAACCATAGCCTTTGTTCTATTTATGAACTTTTGCTAAAGTAGCTGTAATAAGTTAGGAACACTAGGAAGAAATCTTGTCTTCCCCTTGCACTTCACATTTTCTTTAGCGTTGTATCTTTTGCAGAACCTTGTCTGCTCAAAAAATCTGATGGTAGATAAAAGCATTGAAGCCGCATATATTCAGGCAATAAGATCAGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCGTCATATGCTTGGGAATCATACAAAGATGCAG : GAGCTGATCATCTGATACCGATGGAATTGGCACTGAAAATCACTAGTAAAATTAGAGCTAGGGAACGATTTTGTGTATATGTTGTCGTGCCCATGTGGCCTGAAGGGGACCCCAAGTCAATCACTATGCAGGAAATACTCTTCTGGCAGGTAATTTTCGTGAAACTCTTTGATTATGTCTTTTGGATTTTATGAAGAAGCTAGGCAGTTTTAAATGAGCAATGATTAGGTGATACTGATAC</gDNA_template>
            <first_frame> S  W  I  L  S  P  A  F  A  V  L  K  D  S  T  A  I  P  E  D  D  P  K  L  H  V  Y  G  E  D  H  S  E  N  W  H  V  Q  :  I  F  R  S  I  D  S  G  S  V  Q  G  F  P  K  T  I  D  V  A  Q  A  Q  A  R  K  P  *  P  L  F  Y  L  *  T  F  A  K  V  A  V  I  S  *  E  H  *  E  E  I  L  S  S  P  C  T  S  H  F  L  *  R  C  I  F  C  R  T  L  S  A  Q  K  I  *  W  *  I  K  A  L  K  P  H  I  F  R  Q  *  D  Q  L  S  I  S  Y  I  L  K  I  S  I  F  L  D  R  H  M  L  G  N  H  T  K  M  Q  :  E  L  I  I  *  Y  R  W  N  W  H  *  K  S  L  V  K  L  E  L  G  N  D  F  V  Y  M  L  S  C  P  C  G  L  K  G  T  P  S  Q  S  L  C  R  K  Y  S  S  G  R  *  F  S  *  N  S  L  I  M  S  F  G  F  Y  E  E  A  R  Q  F  *  M  S  N  D  *  V  I  L  I  </first_frame>
            <second_frame>  H  G  Y  S  A  L  L  L  L  F  *  R  I  V  L  Q  S  Q  R  M  I  L  N  Y  M  Y  M  G  K  I  I  Q  K  I  G  M  Y  R :   S  S  V  P  L  I  L  V  Q  C  R  A  F  P  R  R  L  T  L  R  R  H  R  Q  G  N  H  S  L  C  S  I  Y  E  L  L  L  K  *  L  *  *  V  R  N  T  R  K  K  S  C  L  P  L  A  L  H  I  F  F  S  V  V  S  F  A  E  P  C  L  L  K  K  S  D  G  R  *  K  H  *  S  R  I  Y  S  G  N  K  I  S  S  A  F  H  I  Y  *  K  S  V  F  S  W  I  V  I  C  L  G  I  I  Q  R  C  R :   S  *  S  S  D  T  D  G  I  G  T  E  N  H  *  *  N  *  S  *  G  T  I  L  C  I  C  C  R  A  H  V  A  *  R  G  P  Q  V  N  H  Y  A  G  N  T  L  L  A  G  N  F  R  E  T  L  *  L  C  L  L  D  F  M  K  K  L  G  S  F  K  *  A  M  I  R  *  Y  *  Y </second_frame>
            <third_frame>   M  D  T  Q  P  C  F  C  C  F  K  G  *  Y  C  N  P  R  G  *  S  *  T  T  C  I  W  G  R  S  F  R  K  L  A  C  T   : D  L  P  F  H  *  F  W  F  S  A  G  L  S  Q  D  D  *  R  C  A  G  T  G  K  E  T  I  A  F  V  L  F  M  N  F  C  *  S  S  C  N  K  L  G  T  L  G  R  N  L  V  F  P  L  H  F  T  F  S  L  A  L  Y  L  L  Q  N  L  V  C  S  K  N  L  M  V  D  K  S  I  E  A  A  Y  I  Q  A  I  R  S  A  Q  H  F  I  Y  I  E  N  Q  Y  F  L  G  S  S  Y  A  W  E  S  Y  K  D  A   : G  A  D  H  L  I  P  M  E  L  A  L  K  I  T  S  K  I  R  A  R  E  R  F  C  V  Y  V  V  V  P  M  W  P  E  G  D  P  K  S  I  T  M  Q  E  I  L  F  W  Q  V  I  F  V  K  L  F  D  Y  V  F  W  I  L  *  R  S  *  A  V  L  N  E  Q  *  L  G  D  T  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67909" stop="68143"/>
                    <exon start="68603" stop="68796"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSCNKLGTLGRNLVFPLHFTFSLALYLLQNLVCSKNLMVDKSIEAAYIQAIRSAQHFIYIENQYFLGSSYAWESYKDAGADHLIPMELALKITSKIRARERFCVYVVVPMWPEGDPKSITMQEILFWQVIFVKLFDYVFWIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67602" stop="67715"/>
                    <exon start="67796" stop="67879"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWILSPAFAVLKDSTAIPEDDPKLHVYGEDHSENWHVQIFRSIDSGSVQGFPKTIDVAQAQARKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="64014" PGL_stop="63565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64014" e_stop="63565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="64014" e_stop="63565" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64014" stop="63565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCCAAACAGGGTTTTGTGAATTGGGTATAACACGTGTACGAGCAAGAGCGGTATGGGGTGCACACACAGCAACATATGGGTCACTAGTGATTATACTCCGGTGGTGGATTTTCTGGTCGGTGCTTTTCACATTGGGTAGTTCGCCGTTTCCGTCGTCGGCAGTGGATCCAGTTTGAGGTTTCCGGCAGACATCACAGGCTGTGAAGCAGCGGCGTATACGCTCAGAAGTTAAGTCCATGTTGGGTAAATGACGGGCTTGAATGATGTGAAGCTCCAAATCTCCATGTAAACAGATGAAGTTTTCCTGAGATGAATTTTCTGCCATCTTCACAGAGAAGAAGAAGAAAGGTTGTGTTTGAAGATAGAAGAGAAAAATGGGTGGCGTCACGTTGTGATGAATAACTGTAAGTTGTTGGCTTTTGCTGAGATTTTACGACTCCGAACAGGT</gDNA_template>
            <first_frame> I  P  N  R  V  L  *  I  G  Y  N  T  C  T  S  K  S  G  M  G  C  T  H  S  N  I  W  V  T  S  D  Y  T  P  V  V  D  F  L  V  G  A  F  H  I  G  *  F  A  V  S  V  V  G  S  G  S  S  L  R  F  P  A  D  I  T  G  C  E  A  A  A  Y  T  L  R  S  *  V  H  V  G  *  M  T  G  L  N  D  V  K  L  Q  I  S  M  *  T  D  E  V  F  L  R  *  I  F  C  H  L  H  R  E  E  E  E  R  L  C  L  K  I  E  E  K  N  G  W  R  H  V  V  M  N  N  C  K  L  L  A  F  A  E  I  L  R  L  R  T  G </first_frame>
            <second_frame>  S  Q  T  G  F  C  E  L  G  I  T  R  V  R  A  R  A  V  W  G  A  H  T  A  T  Y  G  S  L  V  I  I  L  R  W  W  I  F  W  S  V  L  F  T  L  G  S  S  P  F  P  S  S  A  V  D  P  V  *  G  F  R  Q  T  S  Q  A  V  K  Q  R  R  I  R  S  E  V  K  S  M  L  G  K  *  R  A  *  M  M  *  S  S  K  S  P  C  K  Q  M  K  F  S  *  D  E  F  S  A  I  F  T  E  K  K  K  K  G  C  V  *  R  *  K  R  K  M  G  G  V  T  L  *  *  I  T  V  S  C  W  L  L  L  R  F  Y  D  S  E  Q   </second_frame>
            <third_frame>   P  K  Q  G  F  V  N  W  V  *  H  V  Y  E  Q  E  R  Y  G  V  H  T  Q  Q  H  M  G  H  *  *  L  Y  S  G  G  G  F  S  G  R  C  F  S  H  W  V  V  R  R  F  R  R  R  Q  W  I  Q  F  E  V  S  G  R  H  H  R  L  *  S  S  G  V  Y  A  Q  K  L  S  P  C  W  V  N  D  G  L  E  *  C  E  A  P  N  L  H  V  N  R  *  S  F  P  E  M  N  F  L  P  S  S  Q  R  R  R  R  K  V  V  F  E  D  R  R  E  K  W  V  A  S  R  C  D  E  *  L  *  V  V  G  F  C  *  D  F  T  T  P  N  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0127J16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="78170" PGL_stop="80441"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78170" e_stop="78260"/>
            <exon e_start="78400" e_stop="78419"/>
            <exon e_start="79360" e_stop="79470"/>
            <exon e_start="79559" e_stop="79658"/>
            <exon e_start="79975" e_stop="80124"/>
            <exon e_start="80215" e_stop="80441"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.531" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.971" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78170" e_stop="78260" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78261" i_stop="78399" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78400" e_stop="78419" e_length="20"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.935">
            <gDNA_intron_boundary i_start="78420" i_stop="79359" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79360" e_stop="79470" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.531">
            <gDNA_intron_boundary i_start="79471" i_stop="79558" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79559" e_stop="79658" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.875" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79659" i_stop="79974" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79975" e_stop="80124" e_length="150"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.971">
            <gDNA_intron_boundary i_start="80125" i_stop="80214" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="80215" e_stop="80441" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78170" stop="78260"/>
              <exon start="78400" stop="78419"/>
              <exon start="79360" stop="79470"/>
              <exon start="79559" stop="79658"/>
              <exon start="79975" stop="80092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78178" stop="78260"/>
              <exon start="78400" stop="78419"/>
              <exon start="79360" stop="79470"/>
              <exon start="79559" stop="79658"/>
              <exon start="79975" stop="80124"/>
              <exon start="80215" stop="80441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78228" stop="78260"/>
              <exon start="78400" stop="78419"/>
              <exon start="79360" stop="79470"/>
              <exon start="79559" stop="79658"/>
              <exon start="79975" stop="80124"/>
              <exon start="80215" stop="80441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78229" stop="78260"/>
              <exon start="78400" stop="78419"/>
              <exon start="79360" stop="79470"/>
              <exon start="79559" stop="79658"/>
              <exon start="79975" stop="80124"/>
              <exon start="80215" stop="80424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAGCTTCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG : GCTGATTCTCCACGCAAAAG : GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG : GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG : GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAG : AAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAACTATACAACCTCAGCAAATACTTCAAACTCTCAACTAATCAAGGGTCATTATCAACAATAGAATCAGGCTTTTATG</gDNA_template>
            <first_frame> L  K  L  Q  L  L  H  H  S  S  R  V  N  L  G  I  A  S  Y  W  Q  F  R  V  R  S  I  I  R  N   : G  *  F  S  T  Q  K  :  V  F  P  L  S  F  T  L  G  R  K  V  K  I  S  L  S  I  P  N  *  I  T  V  K  A  K  R  K  I  K  V  Q  K  S  W  K  :  G  *  R  Y  *  S  W  K  H  T  L  C  D  W  I  I  F  K  G  H  S  K  G  S  *  R  A  F  L  K  G  G  K   : G  E  V  S  F  S  G  C  G  A  P  F  S  H  L  S  W  F  C  F  H  N  N  G  *  S  *  G  C  Q  S  L  H  *  A  P  *  S  V  R  P  *  R  P  V  H  N  G  G  E   : E  D  I  T  S  A  L  L  A  A  I  K  D  D  Q  F  F  H  C  N  I  I  F  T  Q  L  D  Q  M  A  R  *  N  S  F  S  H  A  S  D  R  L  N  L  A  T  I  L  P  N  N  Y  T  T  S  A  N  T  S  N  S  Q  L  I  K  G  H  Y  Q  Q  *  N  Q  A  F  M </first_frame>
            <second_frame>  *  S  F  N  S  C  I  I  L  V  E  S  I  *  G  S  L  R  I  G  N  L  G  F  A  P  S  S  E  M  :  A  D  S  P  R  K  R :   Y  S  R  S  P  S  P  W  E  E  K  S  R  S  R  S  R  S  P  T  R  S  Q  S  R  P  R  G  R  S  R  S  R  S  H  G  R :   A  E  D  T  N  P  G  N  T  L  Y  V  T  G  L  S  S  R  V  T  Q  R  D  L  E  E  H  F  S  K  E  G  K  :  V  K  S  A  F  L  V  V  E  P  R  S  R  I  S  R  G  F  A  F  I  T  M  D  S  L  E  D  A  N  R  C  I  K  H  L  N  Q  S  V  L  E  G  R  S  I  T  V  E  K  :  K  T  L  R  Q  L  C  W  Q  Q  S  K  M  I  S  S  S  I  A  T  L  Y  S  L  S  L  T  K  W  P  A  K  T  A  F  H  M  H  L  I  D  *  T  *  Q  L  F  C  Q  T  T  I  Q  P  Q  Q  I  L  Q  T  L  N  *  S  R  V  I  I  N  N  R  I  R  L  L   </second_frame>
            <third_frame>   K  A  S  T  L  A  S  F  *  S  S  Q  F  R  D  R  F  V  L  A  I  *  G  S  L  H  H  P  K  W :   L  I  L  H  A  K   : G  I  P  A  L  L  H  L  G  K  K  S  Q  D  L  A  L  D  P  Q  L  D  H  S  Q  G  Q  E  E  D  Q  G  P  E  V  M  E   : G  L  K  I  L  I  L  E  T  H  S  M  *  L  D  Y  L  Q  G  S  L  K  G  I  L  K  S  I  S  Q  R  R  E  R :   *  S  Q  L  F  W  L  W  S  P  V  L  A  S  L  V  V  L  L  S  *  Q  W  I  V  L  R  M  P  I  A  A  L  S  T  L  I  S  P  S  L  K  A  G  P  *  R  W  R  R :   R  H  Y  V  S  F  V  G  S  N  Q  R  *  S  V  L  P  L  Q  H  Y  I  H  S  A  *  P  N  G  P  L  K  Q  L  F  T  C  I  *  S  T  K  L  S  N  Y  F  A  K  Q  L  Y  N  L  S  K  Y  F  K  L  S  T  N  Q  G  S  L  S  T  I  E  S  G  F  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78213" stop="78260"/>
                    <exon start="78400" stop="78419"/>
                    <exon start="79360" stop="79470"/>
                    <exon start="79559" stop="79658"/>
                    <exon start="79975" stop="80124"/>
                    <exon start="80215" stop="80340"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLRIGNLGFAPSSEMADSPRKRYSRSPSPWEEKSRSRSRSPTRSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGLSSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRSITVEKKTLRQLCWQQSKMISSSIATLYSLSLTKWPAKTAFHMHLID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78224" e_stop="78260"/>
            <exon e_start="78400" e_stop="79128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78224" e_stop="78260" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78261" i_stop="78399" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78400" e_stop="79128" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78224" stop="78260"/>
              <exon start="78400" stop="79019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78225" stop="78260"/>
              <exon start="78400" stop="79128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78225" stop="78260"/>
              <exon start="78400" stop="79091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78225" stop="78260"/>
              <exon start="78400" stop="78907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG : GCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATGCAAGGGATAAGGTTCAATTTTTTCTCTCTCTTTGATTTGAAGTAATGTTTTCCAGGGAACATCCTAATGAAGTCTCCCACTGTATGGTCGTCAAAGATCCTCCTACTTATTGATAAAATTGGTCATATGCTAAGTCTTTCTTGAGTTAGAAAGTACCAATCAACCTTTATGGATAAGTTTTTGGCATTTTTTACAAGTAAAATTGTTGAGCATGTTAATGG</gDNA_template>
            <first_frame> Y  W  Q  F  R  V  R  S  I  I  R  N   : G  *  F  S  T  Q  K  V  P  L  C  F  F  I  E  L  *  G  F  S  V  Y  L  L  H  R  L  D  P  S  N  F  P  *  L  V  L  S  L  L  G  F  F  C  L  Y  F  A  D  L  Y  F  L  Y  L  V  V  G  L  V  N  G  E  Y  I  V  L  F  I  R  L  V  G  I  S  M  W  C  K  K  I  E  W  G  L  L  D  F  G  E  F  T  L  I  C  V  L  E  R  C  *  C  V  N  L  F  *  *  R  N  G  K  V  *  I  C  F  W  K  N  C  F  *  V  Y  H  V  E  L  V  F  R  L  F  Y  W  G  M  S  L  K  H  K  T  F  L  R  I  S  Y  F  V  Y  M  G  N  S  V  Y  N  K  V  I  N  P  M  P  Y  L  C  K  G  *  G  S  I  F  S  L  S  L  I  *  S  N  V  F  Q  G  T  S  *  *  S  L  P  L  Y  G  R  Q  R  S  S  Y  L  L  I  K  L  V  I  C  *  V  F  L  E  L  E  S  T  N  Q  P  L  W  I  S  F  W  H  F  L  Q  V  K  L  L  S  M  L  M  </first_frame>
            <second_frame>  I  G  N  L  G  F  A  P  S  S  E  M  :  A  D  S  P  R  K  R  Y  H  S  V  S  L  *  N  F  E  D  F  L  F  I  C  C  I  D  L  I  R  L  T  F  R  N  W  F  Y  L  Y  *  G  F  F  V  C  I  S  L  I  Y  I  F  F  I  W  L  L  A  L  *  M  V  N  T  L  F  Y  S  S  G  *  L  G  Y  L  C  G  V  K  K  L  N  G  V  C  W  I  L  G  S  S  L  *  F  V  F  W  R  D  V  N  V  L  I  F  F  N  R  E  M  V  R  Y  E  S  V  F  G  R  I  V  F  K  F  I  M  *  N  *  F  S  V  C  F  I  G  E  C  H  *  S  I  K  H  F  *  E  S  H  I  L  Y  I  W  V  I  L  Y  I  I  K  S  L  I  L  C  L  T  Y  A  R  D  K  V  Q  F  F  L  S  L  *  F  E  V  M  F  S  R  E  H  P  N  E  V  S  H  C  M  V  V  K  D  P  P  T  Y  *  *  N  W  S  Y  A  K  S  F  L  S  *  K  V  P  I  N  L  Y  G  *  V  F  G  I  F  Y  K  *  N  C  *  A  C  *  W </second_frame>
            <third_frame>   L  A  I  *  G  S  L  H  H  P  K  W :   L  I  L  H  A  K  G  T  T  L  F  L  Y  R  T  L  R  I  F  C  L  F  V  A  S  T  *  S  V  *  L  S  V  I  G  F  I  F  I  R  V  F  L  S  V  F  R  *  S  I  F  S  L  F  G  C  W  P  C  E  W  *  I  H  C  F  I  H  Q  A  S  W  D  I  Y  V  V  *  K  N  *  M  G  F  V  G  F  W  G  V  H  F  D  L  C  F  G  E  M  L  M  C  *  S  F  L  I  E  K  W  *  G  M  N  L  F  L  E  E  L  F  L  S  L  S  C  R  I  S  F  P  F  V  L  L  G  N  V  T  E  A  *  N  I  S  E  N  L  I  F  C  I  Y  G  *  F  C  I  *  *  S  H  *  S  Y  A  L  L  M  Q  G  I  R  F  N  F  F  S  L  F  D  L  K  *  C  F  P  G  N  I  L  M  K  S  P  T  V  W  S  S  K  I  L  L  L  I  D  K  I  G  H  M  L  S  L  S  *  V  R  K  Y  Q  S  T  F  M  D  K  F  L  A  F  F  T  S  K  I  V  E  H  V  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78501" stop="78701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLSLLGFFCLYFADLYFLYLVVGLVNGEYIVLFIRLVGISMWCKKIEWGLLDFGEFTLICVLERC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="78170" e_stop="78260"/>
            <exon e_start="78400" e_stop="78419"/>
            <exon e_start="79360" e_stop="79470"/>
            <exon e_start="79559" e_stop="79658"/>
            <exon e_start="79975" e_stop="80366"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.531" e_score="1.000"/>
          <exon-intron don_prob="0.875" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78170" e_stop="78260" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78261" i_stop="78399" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78400" e_stop="78419" e_length="20"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.935">
            <gDNA_intron_boundary i_start="78420" i_stop="79359" i_length="940"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79360" e_stop="79470" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.531">
            <gDNA_intron_boundary i_start="79471" i_stop="79558" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79559" e_stop="79658" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.875" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79659" i_stop="79974" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79975" e_stop="80366" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78170" stop="78260"/>
              <exon start="78400" stop="78419"/>
              <exon start="79360" stop="79470"/>
              <exon start="79559" stop="79658"/>
              <exon start="79975" stop="80092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78208" stop="78260"/>
              <exon start="78400" stop="78419"/>
              <exon start="79360" stop="79470"/>
              <exon start="79559" stop="79658"/>
              <exon start="79975" stop="80366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAGCTTCAACTCTTGCATCATTCTAGTCGAGTCAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATG : GCTGATTCTCCACGCAAAAG : GTATTCCCGCTCTCCTTCACCTTGGGAAGAAAAGTCAAGATCTCGCTCTCGATCCCCAACTAGATCACAGTCAAGGCCAAGAGGAAGATCAAGGTCCAGAAGTCATGGAAG : GGCTGAAGATACTAATCCTGGAAACACACTCTATGTGACTGGATTATCTTCAAGGGTCACTCAAAGGGATCTTGAAGAGCATTTCTCAAAGGAGGGAAAG : GTGAAGTCAGCTTTTCTGGTTGTGGAGCCCCGTTCTCGCATCTCTCGTGGTTTTGCTTTCATAACAATGGATAGTCTTGAGGATGCCAATCGCTGCATTAAGCACCTTAATCAGTCCGTCCTTGAAGGCCGGTCCATAACGGTGGAGAAGGTCAGCTATTTATACATTGATTGGTGAACCATTGTTCTGTTGGCTTGCTTTTCTTTTTTCTTGACTTGGAGGTTTTCTGATTATATTCAGAAGACATTACGTCAGCTTTGTTGGCAGCAATCAAAGATGATCAGTTCTTCCATTGCAACATTATATTCACTCAGCTTGACCAAATGGCCCGCTAAAACAGCTTTTCACATGCATCTGATCGACTAAACTTAGCAACTATTTTGCCAAACAAC</gDNA_template>
            <first_frame> L  K  L  Q  L  L  H  H  S  S  R  V  N  L  G  I  A  S  Y  W  Q  F  R  V  R  S  I  I  R  N   : G  *  F  S  T  Q  K  :  V  F  P  L  S  F  T  L  G  R  K  V  K  I  S  L  S  I  P  N  *  I  T  V  K  A  K  R  K  I  K  V  Q  K  S  W  K  :  G  *  R  Y  *  S  W  K  H  T  L  C  D  W  I  I  F  K  G  H  S  K  G  S  *  R  A  F  L  K  G  G  K   : G  E  V  S  F  S  G  C  G  A  P  F  S  H  L  S  W  F  C  F  H  N  N  G  *  S  *  G  C  Q  S  L  H  *  A  P  *  S  V  R  P  *  R  P  V  H  N  G  G  E  G  Q  L  F  I  H  *  L  V  N  H  C  S  V  G  L  L  F  F  F  L  D  L  E  V  F  *  L  Y  S  E  D  I  T  S  A  L  L  A  A  I  K  D  D  Q  F  F  H  C  N  I  I  F  T  Q  L  D  Q  M  A  R  *  N  S  F  S  H  A  S  D  R  L  N  L  A  T  I  L  P  N  N </first_frame>
            <second_frame>  *  S  F  N  S  C  I  I  L  V  E  S  I  *  G  S  L  R  I  G  N  L  G  F  A  P  S  S  E  M  :  A  D  S  P  R  K  R :   Y  S  R  S  P  S  P  W  E  E  K  S  R  S  R  S  R  S  P  T  R  S  Q  S  R  P  R  G  R  S  R  S  R  S  H  G  R :   A  E  D  T  N  P  G  N  T  L  Y  V  T  G  L  S  S  R  V  T  Q  R  D  L  E  E  H  F  S  K  E  G  K  :  V  K  S  A  F  L  V  V  E  P  R  S  R  I  S  R  G  F  A  F  I  T  M  D  S  L  E  D  A  N  R  C  I  K  H  L  N  Q  S  V  L  E  G  R  S  I  T  V  E  K  V  S  Y  L  Y  I  D  W  *  T  I  V  L  L  A  C  F  S  F  F  L  T  W  R  F  S  D  Y  I  Q  K  T  L  R  Q  L  C  W  Q  Q  S  K  M  I  S  S  S  I  A  T  L  Y  S  L  S  L  T  K  W  P  A  K  T  A  F  H  M  H  L  I  D  *  T  *  Q  L  F  C  Q  T   </second_frame>
            <third_frame>   K  A  S  T  L  A  S  F  *  S  S  Q  F  R  D  R  F  V  L  A  I  *  G  S  L  H  H  P  K  W :   L  I  L  H  A  K   : G  I  P  A  L  L  H  L  G  K  K  S  Q  D  L  A  L  D  P  Q  L  D  H  S  Q  G  Q  E  E  D  Q  G  P  E  V  M  E   : G  L  K  I  L  I  L  E  T  H  S  M  *  L  D  Y  L  Q  G  S  L  K  G  I  L  K  S  I  S  Q  R  R  E  R :   *  S  Q  L  F  W  L  W  S  P  V  L  A  S  L  V  V  L  L  S  *  Q  W  I  V  L  R  M  P  I  A  A  L  S  T  L  I  S  P  S  L  K  A  G  P  *  R  W  R  R  S  A  I  Y  T  L  I  G  E  P  L  F  C  W  L  A  F  L  F  S  *  L  G  G  F  L  I  I  F  R  R  H  Y  V  S  F  V  G  S  N  Q  R  *  S  V  L  P  L  Q  H  Y  I  H  S  A  *  P  N  G  P  L  K  Q  L  F  T  C  I  *  S  T  K  L  S  N  Y  F  A  K  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78213" stop="78260"/>
                    <exon start="78400" stop="78419"/>
                    <exon start="79360" stop="79470"/>
                    <exon start="79559" stop="79658"/>
                    <exon start="79975" stop="80151"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLRIGNLGFAPSSEMADSPRKRYSRSPSPWEEKSRSRSRSPTRSQSRPRGRSRSRSHGRAEDTNPGNTLYVTGLSSRVTQRDLEEHFSKEGKVKSAFLVVEPRSRISRGFAFITMDSLEDANRCIKHLNQSVLEGRSITVEKVSYLYIDW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="78205" e_stop="78907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78205" e_stop="78907" e_length="703"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78205" stop="78907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTTAGGGATCGCTTCGTATTGGCAATTTAGGGTTCGCTCCATCATCCGAAATGGCAAGCTTTGCTCTCTCTAATCTCCCATTATATCTTTCTTCTATTTAACATATATGTGTTTTTTTGCATATTTTCAGAATTTTTTAACCTAATTAATTGTCGAAACAACAAATTTTATCATCTTTATGATTTCTTGCAGGCTGATTCTCCACGCAAAAGGTACCACTCTGTTTCTTTATAGAACTTTGAGGATTTTCTGTTTATTTGTTGCATCGACTTGATCCGTCTAACTTTCCGTAATTGGTTTTATCTTTATTAGGGTTTTTTTGTCTGTATTTCGCTGATCTATATTTTCTTTATTTGGTTGTTGGCCTTGTGAATGGTGAATACATTGTTTTATTCATCAGGCTAGTTGGGATATCTATGTGGTGTAAAAAAATTGAATGGGGTTTGTTGGATTTTGGGGAGTTCACTTTGATTTGTGTTTTGGAGAGATGTTAATGTGTTAATCTTTTTTAATAGAGAAATGGTAAGGTATGAATCTGTTTTTGGAAGAATTGTTTTTAAGTTTATCATGTAGAATTAGTTTTCCGTTTGTTTTATTGGGGAATGTCACTGAAGCATAAAACATTTCTGAGAATCTCATATTTTGTATATATGGGTAATTCTGTATATAATAAAGTCATTAATCCTATGCCTTACTTATG</gDNA_template>
            <first_frame> Q  F  R  D  R  F  V  L  A  I  *  G  S  L  H  H  P  K  W  Q  A  L  L  S  L  I  S  H  Y  I  F  L  L  F  N  I  Y  V  F  F  C  I  F  S  E  F  F  N  L  I  N  C  R  N  N  K  F  Y  H  L  Y  D  F  L  Q  A  D  S  P  R  K  R  Y  H  S  V  S  L  *  N  F  E  D  F  L  F  I  C  C  I  D  L  I  R  L  T  F  R  N  W  F  Y  L  Y  *  G  F  F  V  C  I  S  L  I  Y  I  F  F  I  W  L  L  A  L  *  M  V  N  T  L  F  Y  S  S  G  *  L  G  Y  L  C  G  V  K  K  L  N  G  V  C  W  I  L  G  S  S  L  *  F  V  F  W  R  D  V  N  V  L  I  F  F  N  R  E  M  V  R  Y  E  S  V  F  G  R  I  V  F  K  F  I  M  *  N  *  F  S  V  C  F  I  G  E  C  H  *  S  I  K  H  F  *  E  S  H  I  L  Y  I  W  V  I  L  Y  I  I  K  S  L  I  L  C  L  T  Y  </first_frame>
            <second_frame>  N  L  G  I  A  S  Y  W  Q  F  R  V  R  S  I  I  R  N  G  K  L  C  S  L  *  S  P  I  I  S  F  F  Y  L  T  Y  M  C  F  F  A  Y  F  Q  N  F  L  T  *  L  I  V  E  T  T  N  F  I  I  F  M  I  S  C  R  L  I  L  H  A  K  G  T  T  L  F  L  Y  R  T  L  R  I  F  C  L  F  V  A  S  T  *  S  V  *  L  S  V  I  G  F  I  F  I  R  V  F  L  S  V  F  R  *  S  I  F  S  L  F  G  C  W  P  C  E  W  *  I  H  C  F  I  H  Q  A  S  W  D  I  Y  V  V  *  K  N  *  M  G  F  V  G  F  W  G  V  H  F  D  L  C  F  G  E  M  L  M  C  *  S  F  L  I  E  K  W  *  G  M  N  L  F  L  E  E  L  F  L  S  L  S  C  R  I  S  F  P  F  V  L  L  G  N  V  T  E  A  *  N  I  S  E  N  L  I  F  C  I  Y  G  *  F  C  I  *  *  S  H  *  S  Y  A  L  L  M </second_frame>
            <third_frame>   I  *  G  S  L  R  I  G  N  L  G  F  A  P  S  S  E  M  A  S  F  A  L  S  N  L  P  L  Y  L  S  S  I  *  H  I  C  V  F  L  H  I  F  R  I  F  *  P  N  *  L  S  K  Q  Q  I  L  S  S  L  *  F  L  A  G  *  F  S  T  Q  K  V  P  L  C  F  F  I  E  L  *  G  F  S  V  Y  L  L  H  R  L  D  P  S  N  F  P  *  L  V  L  S  L  L  G  F  F  C  L  Y  F  A  D  L  Y  F  L  Y  L  V  V  G  L  V  N  G  E  Y  I  V  L  F  I  R  L  V  G  I  S  M  W  C  K  K  I  E  W  G  L  L  D  F  G  E  F  T  L  I  C  V  L  E  R  C  *  C  V  N  L  F  *  *  R  N  G  K  V  *  I  C  F  W  K  N  C  F  *  V  Y  H  V  E  L  V  F  R  L  F  Y  W  G  M  S  L  K  H  K  T  F  L  R  I  S  Y  F  V  Y  M  G  N  S  V  Y  N  K  V  I  N  P  M  P  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78238" stop="78441"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSLHHPKWQALLSLISHYIFLLFNIYVFFCIFSEFFNLINCRNNKFYHLYDFLQADSPRKRYHSVSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0127J16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78501" stop="78701"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLSLLGFFCLYFADLYFLYLVVGLVNGEYIVLFIRLVGISMWCKKIEWGLLDFGEFTLICVLERC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 197 chains have been computed
$ 
$ memory statistics:
$ 259352 bytes spliced alignments in total
$ 123 spliced alignments have been stored
$ 2108 bytes was the average size of a spliced alignment
$ 28560 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1680 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 222 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:13:37
-->
