<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:10:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300349" ref_strand="+" ref_description="SGN-E300349 [cLEW-17-L5]">
      <seq>ggcaatacccatttatttggctcccttcgctacgccaatttctctgtctgtctctgttgagtttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttgtgactaacgactatatttccgatcagaaactatctatttcaacctacagggacactggagcggcccttacatcaactgcagcgaagaagggagggctttcaactggagatgttggagcacaatacacatataagaatactttacttgatgtcaaagatgatacagcgtgaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="921" stop="4277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1211" g_stop="1352" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="210" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="321" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3977" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="396" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E300349" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1211" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTAC</genome_strand>
        <mrna_strand>GGCAATACCCATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTGTCTGTCTCTGTTGAGTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTGTGACTAACGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGGGACACTGGAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGCGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACACATATAAGAATACTTTACTTGATGTCAAAGATGATACAGCGTGAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745296" ref_strand="+" ref_description="SGN-E745296 [GI|47105782]">
      <seq>gggctcccttcgctacgccaatttctctctctctctctgttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttggggttagtgcctggaggagaggtgttcaataagtagttcgataaacttgtggttttttcccccctcaatttatatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctacatttcccctcggagaaagaccaagtgtttgatgtgttccctctggaagagctttttcttttgatatggtgcaataggtaacttcaccagttgcgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="929" stop="5290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1228" g_stop="1352" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="193" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="304" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="391" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="600" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4405" g_stop="4985" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="1181" r_length="581" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1184" polyA_stop="1204"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E745296" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1181</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1228" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGC</genome_strand>
        <mrna_strand>GGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699336" ref_strand="+" ref_description="SGN-E699336 [FA09CG08]">
      <seq>cgcttcgctacgccaatttctctctctctctctgttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataaccctgacaattgtgaagctccagctcaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="935" stop="4879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1233" g_stop="1352" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="188" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="299" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="386" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="595" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4405" g_stop="4579" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="771" r_length="176" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E699336" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1233" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAA-CCTGACAATTGTGAAGCTCAAGCTCAATAAT</genome_strand>
        <mrna_strand>CGCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCCTGACAATTGTGAAGCTCCAGCTCAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200494" ref_strand="+" ref_description="SGN-E200494 [cLEB-8-J12]">
      <seq>gcacgaggtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="962" stop="4546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1261" g_stop="1352" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="159" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="270" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="357" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4246" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="516" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E200494" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1261" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATAT</genome_strand>
        <mrna_strand>GCAC-GAGGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310603" ref_strand="+" ref_description="SGN-E310603 [cLEZ-19-A3]">
      <seq>ttgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcaaaggcaagttacgagacagccgaaggtaaacttgcaaaatttaccgctggcattagtgtgacaaaaccagattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="967" stop="4578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1267" g_stop="1352" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="154" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="265" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="352" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4278" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="543" r_length="191" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E310603" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1267" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTC</genome_strand>
        <mrna_strand>TTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAAAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATTTACCGCTGGCATTAGTGTGACAAAACCAGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211210" ref_strand="+" ref_description="SGN-E211210 [cLEC-70-J3]">
      <seq>tgtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="968" stop="4596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1268" g_stop="1352" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="153" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="264" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="351" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="560" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E211210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1268" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT</genome_strand>
        <mrna_strand>TGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697785" ref_strand="+" ref_description="SGN-E697785 [FA04BA12]">
      <seq>gtttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcgaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacctcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaaggctcagctcgataatcacggtaacctgggggctctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="969" stop="4903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1269" g_stop="1352" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="152" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="263" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="350" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="559" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4405" g_stop="4603" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="758" r_length="199" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E697785" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1269" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTG</genome_strand>
        <mrna_strand>GTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCGACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACCTCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGGCTCAGCTCGATAATCACGGTAACCTGGGGGCTCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306808" ref_strand="+" ref_description="SGN-E306808 [cLEY-11-E10]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="970" stop="4759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1270" g_stop="1352" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="558" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4405" g_stop="4459" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="613" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E306808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1270" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTG</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270212" ref_strand="+" ref_description="SGN-E270212 [cLEM-1-O4]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaanctagcagcctttgggnaaanaangggttnaaaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="970" stop="4597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1270" g_stop="1352" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3531" i_length="1977">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.242" a_score="0.44"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3532" g_stop="3570" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="191" r_length="40" r_score="0.436"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3571" i_stop="3719" i_length="149">
            <donor d_prob="0.307" d_score="0.44"/>
            <acceptor a_prob="0.720" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3720" g_stop="3811" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="283" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="370" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="579" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4405" g_stop="4411" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="586" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E270212" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1270" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3532" e_stop="3570"/>
          <exon e_start="3720" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGG-CCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGAC</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAANCTAGCAGCCTTTGGGNAAANAANGGG.....................................................................................................................................................TTNAAAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317426" ref_strand="+" ref_description="SGN-E317426 [cTOA-28-J1]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="970" stop="4597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1270" g_stop="1352" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="558" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E317426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1270" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317294" ref_strand="+" ref_description="SGN-E317294 [cTOA-28-H2]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="970" stop="4595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1270" g_stop="1352" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4295" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="557" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E317294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1270" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATAC</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277606" ref_strand="+" ref_description="SGN-E277606 [cLER-6-C23]">
      <seq>tttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="970" stop="4490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1270" g_stop="1352" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="151" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="262" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="349" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4190" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="452" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E277606" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1270" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTT</genome_strand>
        <mrna_strand>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284548" ref_strand="+" ref_description="SGN-E284548 [cLES-3-J21]">
      <seq>ttttacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="971" stop="4560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1271" g_stop="1352" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="150" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="261" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="348" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4260" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="521" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E284548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1271" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAG</genome_strand>
        <mrna_strand>TTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311263" ref_strand="+" ref_description="SGN-E311263 [cLEZ-16-N21]">
      <seq>tacgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="974" stop="4750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1274" g_stop="1352" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="147" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="258" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="345" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="554" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4405" g_stop="4450" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="600" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E311263" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1274" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTA</genome_strand>
        <mrna_strand>TACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304557" ref_strand="+" ref_description="SGN-E304557 [cLEX-11-D9]">
      <seq>cgaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="976" stop="4417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1276" g_stop="1352" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="145" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="256" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="343" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4117" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="373" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E304557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1276" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCT</genome_strand>
        <mrna_strand>CGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311622" ref_strand="+" ref_description="SGN-E311622 [cLEZ-9-A18]">
      <seq>gaaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaagtaaacttgcaaaatataccgctggcattagtgtgacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="977" stop="4570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1277" g_stop="1352" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="144" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="342" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4270" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="525" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E311622" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1277" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAA</genome_strand>
        <mrna_strand>GAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAAGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308052" ref_strand="+" ref_description="SGN-E308052 [cLEY-14-H15]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="978" stop="4754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1278" g_stop="1352" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="550" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4405" g_stop="4454" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="600" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E308052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1278" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATG</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308077" ref_strand="+" ref_description="SGN-E308077 [cLEY-14-H14]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccacagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagatgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcgaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="978" stop="4597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1278" g_stop="1352" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="550" r_length="209" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4405" g_stop="4410" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="556" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E308077" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1278" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGA</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCACAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGATGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCGAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308157" ref_strand="+" ref_description="SGN-E308157 [cLEY-14-I14]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="978" stop="4498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1278" g_stop="1352" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4198" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="452" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E308157" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1278" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATC</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E272401" ref_strand="+" ref_description="SGN-E272401 [cLEM-19-I20]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="978" stop="4476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1278" g_stop="1352" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="143" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="254" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="341" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4176" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="430" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E272401" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1278" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCT</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249640" ref_strand="+" ref_description="SGN-E249640 [cLEF-56-B3]">
      <seq>aaacttccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggacctatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="978" stop="4222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1278" g_stop="1352" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="144" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="255" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3922" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="275" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E249640" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1278" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGA-CTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCT</genome_strand>
        <mrna_strand>AAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACCTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E705160" ref_strand="+" ref_description="SGN-E705160 [FA26BD03]">
      <seq>ccattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="984" stop="5040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1284" g_stop="1352" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="137" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="248" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="335" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="544" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4405" g_stop="4740" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="880" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E705160" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1284" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA</genome_strand>
        <mrna_strand>CCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E212007" ref_strand="+" ref_description="SGN-E212007 [cLEC-66-N23]">
      <seq>cattcctctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="985" stop="4491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1285" g_stop="1352" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="136" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="247" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="334" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4191" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="438" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E212007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1285" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTT</genome_strand>
        <mrna_strand>CATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308035" ref_strand="+" ref_description="SGN-E308035 [cLEY-14-M4]">
      <seq>ctgccagagaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="992" stop="4760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1292" g_stop="1352" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="129" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="240" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="327" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="536" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4405" g_stop="4460" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="592" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E308035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1292" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGA</genome_strand>
        <mrna_strand>CTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307458" ref_strand="+" ref_description="SGN-E307458 [cLEY-12-P17]">
      <seq>agaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="999" stop="4748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1299" g_stop="1352" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="122" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="233" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="320" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="529" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4405" g_stop="4448" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="573" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E307458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1299" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATC</genome_strand>
        <mrna_strand>AGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306204" ref_strand="+" ref_description="SGN-E306204 [cLEY-13-H5]">
      <seq>gaaaatgagcaagggacctggacttttctctgatattggcaagaaagccagagatgttttgactaaggactatatttccgatcagaaactatctatttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="1000" stop="4492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1300" g_stop="1352" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.789" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1487" g_stop="1554" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="121" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="232" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="319" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4088" g_stop="4192" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="424" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E306204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1300" e_stop="1352"/>
          <exon e_start="1487" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAGGTAATTTTCCGATCCAGTTGCTTTCATCTCCTTCATTTCATTTTCAATTTCAGTTTTGCTGCTAACTAGCGATGATTATAAGTTAAGCAGATAGATGCATATGATTTACCTGACCACATGATATTTTGATACAGATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTC</genome_strand>
        <mrna_strand>GAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG......................................................................................................................................ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313193" ref_strand="+" ref_description="SGN-E313193 [cTOA-18-L9]">
      <seq>ctatatttccgatcacaaactatctatttcaacctacagagacactggagtggcccttacatcaactgcagtgaacaagggatggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgcccctacaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcattactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="1203" stop="4490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1503" g_stop="1554" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="163" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="250" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4088" g_stop="4190" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="353" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E313193" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1503" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTT</genome_strand>
        <mrna_strand>CTATATTTCCGATCACAAACTATCTATTTCAACCTACAGAGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAACAAGGGATGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTACAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCATTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358369" ref_strand="+" ref_description="SGN-E358369 [cLHT-28-J16]">
      <seq>tctatttcaacgtacagtgacactggagtggcccttacatcaactgcggtgaagaagggagggctttcaactggagatgttggtgcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcttcaaacatttcaactactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcctttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="1225" stop="4885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1525" g_stop="1554" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="141" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="228" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="437" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4405" g_stop="4585" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="618" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E358369" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1525" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGT</genome_strand>
        <mrna_strand>TCTATTTCAACGTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCGGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGTGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCTTCAAAC...........................................................................................ATTTCAACTACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCCTTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301203" ref_strand="+" ref_description="SGN-E301203 [cLEW-22-F14]">
      <seq>tttcaacctacagtgacactggagtggcccttacatcaactgcagtgaagaagggagggctttcaactggagatgttggagcacaatacaaatataagaatactttaattgatgtcaaagttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="1229" stop="4856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1529" g_stop="1554" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3701" g_stop="3811" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="137" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="224" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="433" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4405" g_stop="4556" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="585" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E301203" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1529" e_stop="1554"/>
          <exon e_start="3701" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACCTACAGTGACACTGGAGTGGTATGGTTTTATCCACTTCTACCTCTGATTGACTTATTTCTTAGTTTAAAGTCGAGATTCTGGTTTTAGTTAGATTTTTCGGTACTGAATTTGTGAATTTTAGGGTTTATGCAATCTGCTTAGAGTGATTTCATGGTTTGAGTTGTCGTTTGGAGTTCAGGAGATGGTTTGCTTCCTGGTCGTCATAACTCATCTTCTTAATTGAATGGAATTTTCTGTTTATTAGTGATCTCTCATCCTATGATGAAGATTTCTCAACTATGAGACAACAGCTATTTGTTCTATGATGAATTTTAGGGTCTTCTTTCAAGTGTGTTTTGATTTTTATTTTTTTTCTGTATCAATGCTTAAATTACATAACAGCAAAAGTGGGATAATGCTGTTTAGCTGCCAATAAAATCAATCTGAATGGATAATTGTACTTCCTTATTTTCTTGAAGGATATTGCTGATCTTGCCGGCAGCAATATATTGTTCCTTACTTTTCAGATATGCTATTCCTTTTATTCAATTCCGCAGTGCACAGCTAAACTCCAGTCCTTTTCCTCCATTTATCTCATAAAATGATCAAGCATCACCTTAAAGTTAGCCCAGTCCTAGAATTCTTGTGATTAATTATTGGTGTTAAGATATATGTCTTTGTGGGAATATTTTTATCATTTGCACAAAATTGATAGTGGATTTAGGAACCTCAAACTTGATAATGAATTTCACTCATTTGGTATGGTAAATGCAGTAATATTCTAACAATAGTAGTTTCCTCTTAATATTTTCTAAGCTGAAAGAAAATGATTTAGAATTTTGATGTATATGCTTGGTGTTTAAGTAGTAATGTTTTGACATGAAAGACAGAAAGTTCTACCGTCTTCTTTTACATTTTTTGTCCGTCATCTGTCTGAAGTACATTTTGGCTAAAAATTGATCTAGACAGCATTCTTCTTGAATTTGAAAAGAGAAGAAAAAAATTCTTTGGAAAGTCCCTGGCACCAGCCTCCTATAACCCTCTCCCATCTCCCAACAAAAACACTCGTCCTGAAGATTGATAAGATGCTCAAATAATGAACTAATCATCCTTTAATTGACATGTTGAGGATATGTGACTCATCAAAAACCTATATATATTGTTTTTCTGAATCGTGGAAATAATTGCATTGATCAAATTAAGAATTCAATAGTTAAGCCTAGTGTTAGGTAATAATATGTATGAGTTGACTAATTGAGATGTCTTAAATAAGTATTGATAACTTTCTGTTTTACATCTATGGAAGTCTGTGAAATAGATTGAAGTTTTAAGAGTAAAATACGGTTCTCAATTATAATGAATAAACTATTTTGGATCCAGCGTATGTTTCTCATAGTTGGTGAACTCCTTTTAATATATTATCTATTGATTCTAGCTAATATCTAAGTCAAAGTATTTTGTTCAAACTTTCTACCCTTACTCCCGCCAACTAGAAGTACCAGACTTTCTAAGATTGAAATATTTGTGGCTGTTGCTCGGGTGCTTCTAAAGTGTTGCTGCACCCGCATCGTATCCTCAAAATTGCACTACTTCTGAGGATCCAACATGCCCCCGTCGGTAGTTTTGGAGAGTCCGAGCAACATAGATTTGAGGTGGTCCTCCTTATTTACAGTTTCCTATGAAGCTTGTTTGAGAGCTTCAGTGACTGATATCTAGAGCCCTTGCTGAACTTTATATTTTGTATCATAATATGTTGAAAGGGAAACTAAACTTAAAACGTTGGTGTTTCCATTCTTATATCTAGATAAGAATTTAAATGTGATAGACTTATGTTTTTGGTACAGAACAAGATTGCACATGGTACTGAGAAGCTCTTGCAGTTTATGGCCTCATTGGATTCATTATAGTTTTGGACTTCCTTAGTATATTGGCAAAGATTCTTCTACAATCTTCTAACTATGTTTGCTCTGTACTTTTCAGAAATAAGATAATCTCTTTTATTTGCTGCTTAAAAAGGCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATGGTCTTATTTGCTCCAATAGATAGTTTCAGATTTTATGTGCTAGTTTTCTTCTCTATTTGGATTACTGACAATAATAGATATCAATTTGGATTCTAAGTTCTTGCTCTTTAATCTTGATTTCTCGATATAGGCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAA</genome_strand>
        <mrna_strand>TTTCAACCTACAGTGACACTGGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E251612" ref_strand="+" ref_description="SGN-E251612 [cLEG-9-L6]">
      <seq>gttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgngggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="3494" stop="5050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3794" g_stop="3811" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="105" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="314" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4405" g_stop="4750" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="660" r_length="346" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E251612" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3794" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGG</genome_strand>
        <mrna_strand>GTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGNGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261981" ref_strand="+" ref_description="SGN-E261981 [cLEG-58-O4]">
      <seq>gttgatacagcgtcaaacatttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="3494" stop="4917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3794" g_stop="3811" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="105" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="314" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4405" g_stop="4617" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="527" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E261981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3794" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATACAGCGTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGAT</genome_strand>
        <mrna_strand>GTTGATACAGCGTCAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253997" ref_strand="+" ref_description="SGN-E253997 [cLEG-34-G11]">
      <seq>gtaaaacatttcaaccactcttactctaaatgacattgcgggttcaacggggaccattggctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgctcggtgctcccactttcgccatcggtgcaaaggcaagttactagacaaccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgtggataacctgacaattgtgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="3601" stop="4865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3805" g_stop="3811" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3903" g_stop="3989" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="94" r_length="87" r_score="0.920"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="303" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4405" g_stop="4565" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="464" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E253997" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3805" e_stop="3811"/>
          <exon e_start="3903" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACGTGAGTTGCTCATGCCTTGTCTTCTTTGCAAAACCATGCCTCTGTTTTTATTTGTTTTATAATGTTTCATGTTTCTCCCTTTTGCTTGCAGATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGC</genome_strand>
        <mrna_strand>GTAAAAC...........................................................................................ATTTCAACCACTCTTACTCTAAATGACATTGCGGGTTCAACGGGGACCATTGGCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTCGGTGCTCCCACTTTCGCCATCGGTGCAAAGGCAAGTTACTAGACAACCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTGGATAACCTGACAATTGTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258462" ref_strand="+" ref_description="SGN-E258462 [cLEG-47-N7]">
      <seq>ttcaaccactcttactctaaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaagccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacatttttttggggttagtgcctggnaagaagagtgttcaataagtagttcgataaacttgtgggtttttcccccctcaattatatggtttctgaatgagttgctctgattctagggcctctttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="3605" stop="5163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3905" g_stop="3989" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="294" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4405" g_stop="4863" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="754" r_length="460" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E258462" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3905" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACA-TTTTTTGGGGTTAGTGCCTGG-AGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATG</genome_strand>
        <mrna_strand>TTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAAGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTTGGGGTTAGTGCCTGGNAAGAAGAGTGTTCAATAAGTAGTTCGATAAACTTGTGGGTTTTTCCCCCCTCAA-TTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211863" ref_strand="+" ref_description="SGN-E211863 [cLEC-66-L22]">
      <seq>taaatgacattgccccttcaacgaaaaccattgcctcactgaaattccctgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttggtctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgngggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggcctttggaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="3622" stop="5045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3922" g_stop="3989" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="277" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4405" g_stop="4745" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="618" r_length="341" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E211863" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3922" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="4745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTT</genome_strand>
        <mrna_strand>TAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGNGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTTGGAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E538301" ref_strand="+" ref_description="SGN-E538301 [TUS-57-G13](-)">
      <seq>tgactacagttctgggaagctagaggttcagtactatcaccatcatgctgcatttagtacagctgttgttctgaaacaaaaccctatagttgatctctctgtcacgcttggtactcccactttcgccatcggtgcagaggcaagttacgagacagccgaaggtaaacttgcaaaatataccgctggcattagtgtgacaaaaccagattcttgtgctgctataatactgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttggggttagtgcctggaggagaggtgttcaataagtagttcgataaacttgtggttttttcccccctcaatttatatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctacatttcccctcggagaaagaccaagtgtttgatgtgttccctctggaagagctttttcttttgatatggtgcaataggtaacttcaccagttgcgttaatttcattttaattattctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="3671" stop="5310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3971" g_stop="3989" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4088" g_stop="4296" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="228" r_length="209" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4405" g_stop="5004" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="828" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="833" polyA_stop="842"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E538301" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3971" e_stop="3989"/>
          <exon e_start="4088" e_stop="4296"/>
          <exon e_start="4405" e_stop="5004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTACAGTTCTGGGAAGGTGAAATTTTTTCCTATATTATGGCAAATGAGTATTGATTGATTGCTGGAAATCATAGAATATTCCCTTCTGAAACATAAATTTGGTTGTTCTTGCAGCTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACTGTAAGTTTTCACTGAGCTTTTGTATCTATGAAGTGAAACTAAAACATAAATGATAAGAAGGTTAAAAGTTTGACATACCTGTTGCCTAATTGATTCTTTTTACACCAGGGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTA</genome_strand>
        <mrna_strand>TGACTACAGTTCTGGGAAG..................................................................................................CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGTTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT............................................................................................................GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297899" ref_strand="+" ref_description="SGN-E297899 [cLET-38-I2]">
      <seq>cgagactagttctctcctgggtgacaaaggggacacaataaaagcatcatatatacatcatctagatgaattgaagaagagtgcagctgtgggcgagatcactcgacggttctccacaaatgagaacaccttcacagttggagggtcatatgctgttgataacctgacaattgtgaagctcaagctcaataatcacggtaacctgggggctctactgcagcatgagctgattccgaagtcattgttgactatttctagtgagtttgacaccaaggccttggaaaagactcccaaatttggtgtggcccttgctctgaagccgtgaactgcatttttggatgtgaacaactaacattttttggggttagtgcctggaggagaggtgttcaataagtagttcgataaacttgtggttttttcccccctcaatttatatggtttctgaatgagttgctctgattctagggcctctttatggtatttctctagttttccccgtcttctacatttcccctcggagaaagaccaagtgtttgatgtgttccctctggaagagctttttcttttgatatggtgcaataggtaacttcaccagttgaaaaaaagaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="4088" stop="5284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4405" g_stop="4968" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="582" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="610"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E297899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4405" e_stop="4968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAG</genome_strand>
        <mrna_strand>GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732056" ref_strand="+" ref_description="SGN-E732056 [LB01AF07]">
      <seq>cgagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtataatcagttgtgattctcgttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7631" stop="6395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7332" g_stop="6695" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E732056" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7332" e_stop="6695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTGATTCTCGTTAAA</genome_strand>
        <mrna_strand>CGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTGATTCTCGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346925" ref_strand="+" ref_description="SGN-E346925 [cTOF-32-L5]">
      <seq>ctctaccggccacatttgctgagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgagccgctgccgataatgataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagnnncngcttctatctattttggttctgttttggtatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7651" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7351" g_stop="6707" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E346925" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7351" e_stop="6707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAG-TTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTG</genome_strand>
        <mrna_strand>CTCTACCGGCCACATTTGCTGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGAGCCGCTGCCGATAATGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGNNNCNGCTTCTATCTATTTTGGTTCTGTTTTGGTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734517" ref_strand="+" ref_description="SGN-E734517 [LB12DE06]">
      <seq>catttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7639" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7339" g_stop="6708" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E734517" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7339" e_stop="6708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGT</genome_strand>
        <mrna_strand>CATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347969" ref_strand="+" ref_description="SGN-E347969 [cTOF-31-F12]">
      <seq>tttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaaggggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttggtttctggntttgttatatcttattgcttttgctactttgaaagcttgttggaatagctaaagagtatttttctgagactctgaaatttgtnttcagtattttaatagtatgccattttggggtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7637" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7337" g_stop="6709" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E347969" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7337" e_stop="6709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAA-GGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTT-GTTTCT-GTTTTGTTATATCTTATTGCTTTTGCTACTTTG-AAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGT-TTCAGTATTTTAATAGTATGCAATTTT-GGGTATAATCAGTTG</genome_strand>
        <mrna_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGGTTTCTGGNTTTGTTATATCTTATTGCTTTTGCTACTTTGAAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAAATTTGTNTTCAGTATTTTAATAGTATGCCATTTTGGGGTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733874" ref_strand="+" ref_description="SGN-E733874 [LB11AG03]">
      <seq>catagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7633" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7333" g_stop="6709" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E733874" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7333" e_stop="6709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTG</genome_strand>
        <mrna_strand>CATAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E734332" ref_strand="+" ref_description="SGN-E734332 [LB12BE11]">
      <seq>cagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7633" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7333" g_stop="6709" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E734332" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7333" e_stop="6709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTG</genome_strand>
        <mrna_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733428" ref_strand="+" ref_description="SGN-E733428 [LB10AA02]">
      <seq>catagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7633" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7333" g_stop="6710" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E733428" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7333" e_stop="6710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTT</genome_strand>
        <mrna_strand>CATAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733646" ref_strand="+" ref_description="SGN-E733646 [LB10CC08]">
      <seq>catagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7633" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7333" g_stop="6710" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E733646" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7333" e_stop="6710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTT</genome_strand>
        <mrna_strand>CATAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733740" ref_strand="+" ref_description="SGN-E733740 [LB10DC07]">
      <seq>catagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7633" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7333" g_stop="6710" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E733740" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7333" e_stop="6710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTT</genome_strand>
        <mrna_strand>CATAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354650" ref_strand="+" ref_description="SGN-E354650 [cTOS-17-J16]">
      <seq>tacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7593" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7293" g_stop="6710" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E354650" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7293" e_stop="6710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTT</genome_strand>
        <mrna_strand>TACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733654" ref_strand="+" ref_description="SGN-E733654 [LB10CD04]">
      <seq>gaggatttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtannaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7638" stop="6419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7342" g_stop="6717" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="646"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E733654" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7342" e_stop="6717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATA</genome_strand>
        <mrna_strand>GAGGATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E711804" ref_strand="+" ref_description="SGN-E711804 [FB03AB06]">
      <seq>ctttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7637" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7338" g_stop="6717" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="638"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E711804" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7338" e_stop="6717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATA</genome_strand>
        <mrna_strand>CTTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357026" ref_strand="+" ref_description="SGN-E357026 [cTOS-22-A8]">
      <seq>gagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7631" stop="6418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7331" g_stop="6718" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E357026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7331" e_stop="6718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAT</genome_strand>
        <mrna_strand>GAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E717818" ref_strand="+" ref_description="SGN-E717818 [FC02DD01]">
      <seq>aatcggccgaattgctctaccggccacatttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgggtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7651" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7355" g_stop="6720" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="646" r_length="635" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="671"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E717818" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7355" e_stop="6720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</genome_strand>
        <mrna_strand>T-TGCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343170" ref_strand="+" ref_description="SGN-E343170 [cTOF-17-F23]">
      <seq>tttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattnntgggntanaaaaanaaaannnaannaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7637" stop="6426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7337" g_stop="6722" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E343170" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7337" e_stop="6722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>TTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTNNTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E354905" ref_strand="+" ref_description="SGN-E354905 [cTOS-19-C13]">
      <seq>gggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7627" stop="6422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7327" g_stop="6722" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E354905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7327" e_stop="6722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>GGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356734" ref_strand="+" ref_description="SGN-E356734 [cTOS-21-K16]">
      <seq>ccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaattttggggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7504" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7204" g_stop="6722" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="503"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E356734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7204" e_stop="6722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>CCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299093" ref_strand="+" ref_description="SGN-E299093 [cLET-42-E10]">
      <seq>agcgttaggtccatgccagtaaggaaagacgacgatgttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagctcttcttctatctattctgattctgctttggtatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaatctttgggtgaaaaaaacagaaactctgaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7473" stop="6416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7173" g_stop="6722" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E299093" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7173" e_stop="6722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>AGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGATGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGCTCTTCTTCTATCTATTCTGATTCTGCTTTGGTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E229406" ref_strand="+" ref_description="SGN-E229406 [cLEL-4-M11](-)">
      <seq>aaagttgtccaagtctaccgtaaaaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggtccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgccgccaataaggataagggtgctaagttcaccgccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcatattgcttttgctgctttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtcttttaatagtatgcagttttgggataaaaaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7398" stop="6412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7098" g_stop="6722" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="398"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E229406" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7098" e_stop="6722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGG</genome_strand>
        <mrna_strand>AAAGTTGTCCAAGTCTACCGTAAAAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGTCCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCCGCCAATAAGGATAAGGGTGCTAAGTTCACCGCCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCATATTGCTTTTGCTGCTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTCTTTTAATAGTATGCAGTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346711" ref_strand="+" ref_description="SGN-E346711 [cTOF-28-J11]">
      <seq>ctactctcagtcatctctaccggccacatttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttggttctggtttggtatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaattttgtttcagtattttaatagtatgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7665" stop="6426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7365" g_stop="6726" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E346711" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7365" e_stop="6726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCTCAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATT</genome_strand>
        <mrna_strand>CTACTCTCAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGGTTCTGGTTTGGTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723127" ref_strand="+" ref_description="SGN-E723127 [FC19CA03]">
      <seq>tgaccggccacatttgccgagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7647" stop="6457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7349" g_stop="6758" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="639"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E723127" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7349" e_stop="6758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</genome_strand>
        <mrna_strand>TGACCGGCCACATTTGCCGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733441" ref_strand="+" ref_description="SGN-E733441 [LB10AB03]">
      <seq>tgtagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaaaannaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7635" stop="6457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7335" g_stop="6758" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="578" r_length="578" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="600"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E733441" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7335" e_stop="6758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</genome_strand>
        <mrna_strand>TGTAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350195" ref_strand="-" ref_description="SGN-E350195 [cTOS-4-I8]">
      <seq>gggtgttgatgagccccccttggtcctcagagttgcgacccaagtccagcgttaggtccatcccattaaggaaagacgccgaggttcaggtggttcgtggaccctccaagggtcgtgaaggaaaagttgtccaattctcccgtaagaagtgggtgatccccattgagcccattcccagagagaaggttaatggatcccctgttaccgttggtattcccccatccaaggttgttatctccaagctcaggctcgacaaggcccgtaggtctcttcttgcccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcccccccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagactctgaaaaaaaaaaaaaaaaaccgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7520" stop="6457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7220" g_stop="6758" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="480"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E350195" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350195" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7220" e_stop="6758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</genome_strand>
        <mrna_strand>GGGTGTTGATGAGCCCCCCTTGGTCCTCAGAGTTGCGACCCAAGTCCAGCGTTAGGTCCATCCCATTAAGGAAAGACGCCGAGGTTCAGGTGGTTCGTGGACCCTCCAAGGGTCGTGAAGGAAAAGTTGTCCAATTCTCCCGTAAGAAGTGGGTGATCCCCATTGAGCCCATTCCCAGAGAGAAGGTTAATGGATCCCCTGTTACCGTTGGTATTCCCCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGCCCGTAGGTCTCTTCTTGCCCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCCCCCCCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216800" ref_strand="+" ref_description="SGN-E216800 [cLEL-1-B1](-)">
      <seq>atggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaccagctaaagagtatttttctgagactctgaaaaaaaaaaaaaaaaaaactcgagagtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7331" stop="6457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7031" g_stop="6758" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="293"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E216800" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7031" e_stop="6758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGA</genome_strand>
        <mrna_strand>ATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGACCAGCTAAAGAGTATTTTTCTGAGACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357845" ref_strand="+" ref_description="SGN-E357845 [cTOS-24-K6]">
      <seq>cgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7444" stop="6464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7144" g_stop="6760" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E357845" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7144" e_stop="6760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCT</genome_strand>
        <mrna_strand>CGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716849" ref_strand="+" ref_description="SGN-E716849 [FB18AH03]">
      <seq>atttgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7638" stop="6464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7338" g_stop="6778" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="573" polyA_stop="588"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E716849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7338" e_stop="6778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</genome_strand>
        <mrna_strand>ATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E714506" ref_strand="+" ref_description="SGN-E714506 [FB11CF01]">
      <seq>gatggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttttgttatatcttattgcttttgctactttgaagcttgttggaatagctaaagagtatttttctgaannaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7629" stop="6466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7329" g_stop="6778" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="590"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E714506" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7329" e_stop="6778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</genome_strand>
        <mrna_strand>GATGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338422" ref_strand="+" ref_description="SGN-E338422 [cTOE-15-O9]">
      <seq>tcggcacgaggcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttggttctgttttggtatatcttattgcttttgctactttgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7634" stop="6497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7346" g_stop="6797" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E338422" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7346" e_stop="6797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGC</genome_strand>
        <mrna_strand>TCGG-CAC-GAGGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGGTTCTGTTTTGGTATATCTTATTGCTTTTGCTACTTTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284219" ref_strand="+" ref_description="SGN-E284219 [cLER-16-E24]">
      <seq>tgcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtcaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcatgctcgacaaggaccgtaggtctcttcttgaccgcaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctattttgtttctgttgtgatatatcttattgctttcgctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7635" stop="6502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7335" g_stop="6802" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E284219" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7335" e_stop="6802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTT</genome_strand>
        <mrna_strand>TGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTCAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCATGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGCAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTGTGATATATCTTATTGCTTTCGCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287165" ref_strand="+" ref_description="SGN-E287165 [cLES-6-H3]">
      <seq>gggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcaggcaattgattagttcttcttctatctatnntgtttctgttttgttatatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7627" stop="6518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7327" g_stop="6818" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E287165" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7327" e_stop="6818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTA</genome_strand>
        <mrna_strand>GGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATNNTGTTTCTGTTTTGTTATATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216704" ref_strand="+" ref_description="SGN-E216704 [cLEL-1-B1](-)">
      <seq>gcatgatttcctcggtggtgaacttagtacccttatccttatcggcagcagcacgacccttagccttacggtcaagaagagacctacggtccttgtcgagcctgagcttggagataacaaccttggatgggtgaataccaacgttaacagtggatccattaaccttctctctggtaatgcgctcaatgtggatcacccacttcttacggtagacttggacaacttttccttcacgacccttgtaggttccacgaaccacctgaacctcgtcgtctttccttactggcatggacctaacgctgtacttggctcgcaactctgaggacaaaggggcgctcatcaacacccggcgaaggctggaaggcgccgtgaaatgtgccttcctgctcttgcggcgggaggaggatactcttggattgtacttcatcttcgacgatttctctcccaacgctccctctctctagacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="6573" stop="7636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6873" g_stop="7340" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E216704" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6873" e_stop="7340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGATTTCCTCGGTGGTGAACTTAGTACCCTTATCCTTATCGGCAGCAGCACGACCCTTAGCCTTACGGTCAAGAAGAGACCTACGGTCCTTGTCGAGCCTGAGCTTGGAGATAACAACCTTGGATGGGTGAATACCAACGTTAACAGTGGATCCATTAACCTTCTCTCTGGTAATGCGCTCAATGTGGATCACCCACTTCTTACGGTAGACTTGGACAACTTTTCCTTCACGACCCTTGTAGGTTCCACGAACCACCTGAACCTCGTCGTCTTTCCTTACTGGCATGGACCTAACGCTGTACTTGGCTCGCAACTCTGAGGACAAAGGGGCGCTCATCAACACCCGGCGAAGGCTGGAAGGCGCCGTGAAATGTGCCTTCCTGCTCTTGCGGCGGGAGGAGGATACTCTTGGATTGTACTTCATCTTCGACGATTTCTCTCCCAACGCTCCCTCTCTGCAAATGT</genome_strand>
        <mrna_strand>GCATGATTTCCTCGGTGGTGAACTTAGTACCCTTATCCTTATCGGCAGCAGCACGACCCTTAGCCTTACGGTCAAGAAGAGACCTACGGTCCTTGTCGAGCCTGAGCTTGGAGATAACAACCTTGGATGGGTGAATACCAACGTTAACAGTGGATCCATTAACCTTCTCTCTGGTAATGCGCTCAATGTGGATCACCCACTTCTTACGGTAGACTTGGACAACTTTTCCTTCACGACCCTTGTAGGTTCCACGAACCACCTGAACCTCGTCGTCTTTCCTTACTGGCATGGACCTAACGCTGTACTTGGCTCGCAACTCTGAGGACAAAGGGGCGCTCATCAACACCCGGCGAAGGCTGGAAGGCGCCGTGAAATGTGCCTTCCTGCTCTTGCGGCGGGAGGAGGATACTCTTGGATTGTACTTCATCTTCGACGATTTCTCTCCCAACGCTCCCTCTCTCTAGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373535" ref_strand="+" ref_description="SGN-E373535 [TUS-31-L8](-)">
      <seq>gcagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcgagagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7634" stop="6567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7334" g_stop="6873" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E373535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7334" e_stop="6873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</genome_strand>
        <mrna_strand>GCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292158" ref_strand="+" ref_description="SGN-E292158 [cLET-1-E12]">
      <seq>cagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcgagagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7633" stop="6565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7333" g_stop="6873" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E292158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7333" e_stop="6873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</genome_strand>
        <mrna_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373536" ref_strand="+" ref_description="SGN-E373536 [TUS-31-L8]">
      <seq>cagagagggagcgttgggagagaaatcgtcgaagatgaagtacaatccaagagtatcctcctcccgccgcaagagcaggaaggcacatttcacggcgccttccagccttcgccgggtgttgatgagcgcccctttgtcctcagagttgcgagccaagtacagcgttaggtccatgccagtaaggaaagacgacgaggttcaggtggttcgtggaacctacaagggtcgtgaaggaaaagttgtccaagtctaccgtaagaagtgggtgatccacattgagcgcattaccagagagaaggttaatggatccactgttaacgttggtattcacccatccaaggttgttatctccaagctcaggctcgacaaggaccgtaggtctcttcttgaccgtaaggctaagggtcgtgctgctgccgataaggataagggtactaagttcaccaccgaggaaatcatgcgagagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="7633" stop="6565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7333" g_stop="6873" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E373536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7333" e_stop="6873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</genome_strand>
        <mrna_strand>CAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330777" ref_strand="+" ref_description="SGN-E330777 [cTOD-8-L20]">
      <seq>aagaatcatttattaccttacctgcaaataattagtgcccctcaactacattattaccagcggaggaataattctctatttccttggtttctccactagtaactcagcctcctaaaatcataaacgtaacgttttcagcggaagcagtagcaatactgggctgtaaggtgaaaattgaaggggttggccatggaaaccatcagaaattgggcagatttagggattgtggatacgatttatgaagacgatgccgaagattcctctactacttctctttcgatctctccaagaatctccccatctccttcacctcctcgctctaagatcgtctcctggtcgcaagtcactggaaatgagactgatgtagtcatacatgttgagagctcacgttttcgcttacacaaagatccgttggcagcaaggagtggatttctgaaaagaaagctgaagggtctgtctgaattaaccctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="11714" stop="13761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12014" g_stop="12348" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12349" i_stop="12504" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12505" g_stop="12574" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="405" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12575" i_stop="13394" i_length="820">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13395" g_stop="13461" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="472" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E330777" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12014" e_stop="12348"/>
          <exon e_start="12505" e_stop="12574"/>
          <exon e_start="13395" e_stop="13461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCATTTATTACCTTACCTGCAAATAATTAATGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTGGTAAGAATTTAATTACTTATTCGTATTAGTATCGTTTATGTTGTATCAGGTGATCTGTCTTTTTTAAAATTATAGCTATACGATTAGTACTAATGTGAATTTACTTTCAATAAATATTGTTTACGCTTGATTTTTTATCTGCATTTGTTATGTAAGGTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAGGTACTTTCATGCTCCAATCATATTCCTTTTTTTTTACCCATGGGTAAATTGATTCAGAAGGAACTTATTCTTTTTTTTTCTTCGACAATTTTTTTCTTTAAAATTATTGACTTGTTGGTGTGTTGTTGCTACATCTCCATCAATCTGAACAGGACTAAAGTTGACTGAATAATTTTCTTATTTGTTCATATCTTAACATAATCTTTAGTTAAATCGTTTCAACACAATGTCTATACATAAATATGAAAACTACTTCAAAAAACAAAACAAGAATTAACATATGATAAGATGATCAAGTTGAAACAGTATACTCCAAAAAAAACGACAGCAGGACACTATTTTTTTTTTTTTTTAATTTAAAGGACAGTAGGACACTATAAATTATATAAAAGAAAAAATTTCTAATTAGTGTACATATTTCCAGAAACCTCTTTCTTGTTTCATTTTTAGAATAATTGATTGTAAACTTTTACTATTGTCCTACAGAAACAAGTGTTTCATTATCAAAAATAAAATAAAATTCTCCCTTAAAAAGTTAAAAAGACAAAATAGTTTTGAGTTTTATTTTGGACGACTCAATTTTCACCATTATCAGCCCTTTTTTTTTCTTTTGTTTTGATAAGGTTTGAATATTTCAAGATATAAGATGGAGATATTATATTTTGCATTTCTTATAATTCAATTGACACTACATAATTGAAGATCATAAAATTGTTTTACAATTATGCACTTGATAGCTGTGCCTACAACTGAAGTGTACATTTCGCAATTAATGCAAAAACTGGGGGCATTTACTGAGTATTTACTAAATTTACCTTAGGATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCT</genome_strand>
        <mrna_strand>AAGAATCATTTATTACCTTACCTGCAAATAATTAGTGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG............................................................................................................................................................GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342833" ref_strand="+" ref_description="SGN-E342833 [cTOF-7-D2]">
      <seq>aatactgggctgtaaggtgaaaattgaaggggttggccatggaaaccatcagaaattgggcagatttagggattgtggatacgatttatgaagacgatgccgaagattcctctactacttctctttcgatctctccaagaatctccccatctccttcacctcctcgctctaagatcgtctcctggtcgcaagtcactggaaatgagactgatgtagtcatacatgttgagagctcacgttttcgcttacacaaggatccgttggcagcaaggagtggatttctgaaaagaaagctgaagggtctgtctgaattaaccctctctccgccgttaaagataacggccgaaacattctctttgatcgcagagttttgttatgactcgcacatccgtcgttacgccgtttaacgtcgctgcactaaatacggcggcggaattgctagagatgacggaggctaataacattgctggtggcgaaaacttggctcagaaaacggaagcatatttccgcggtgtaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttagggatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="11865" stop="14436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12165" g_stop="12348" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12349" i_stop="12504" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12505" g_stop="12574" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="254" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12575" i_stop="13394" i_length="820">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13395" g_stop="13655" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="516" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13656" i_stop="13831" i_length="176">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13832" g_stop="13916" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="600" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13917" i_stop="14081" i_length="165">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14082" g_stop="14136" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="655" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E342833" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12165" e_stop="12348"/>
          <exon e_start="12505" e_stop="12574"/>
          <exon e_start="13395" e_stop="13655"/>
          <exon e_start="13832" e_stop="13916"/>
          <exon e_start="14082" e_stop="14136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTGGTAAGAATTTAATTACTTATTCGTATTAGTATCGTTTATGTTGTATCAGGTGATCTGTCTTTTTTAAAATTATAGCTATACGATTAGTACTAATGTGAATTTACTTTCAATAAATATTGTTTACGCTTGATTTTTTATCTGCATTTGTTATGTAAGGTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAGGTACTTTCATGCTCCAATCATATTCCTTTTTTTTTACCCATGGGTAAATTGATTCAGAAGGAACTTATTCTTTTTTTTTCTTCGACAATTTTTTTCTTTAAAATTATTGACTTGTTGGTGTGTTGTTGCTACATCTCCATCAATCTGAACAGGACTAAAGTTGACTGAATAATTTTCTTATTTGTTCATATCTTAACATAATCTTTAGTTAAATCGTTTCAACACAATGTCTATACATAAATATGAAAACTACTTCAAAAAACAAAACAAGAATTAACATATGATAAGATGATCAAGTTGAAACAGTATACTCCAAAAAAAACGACAGCAGGACACTATTTTTTTTTTTTTTTAATTTAAAGGACAGTAGGACACTATAAATTATATAAAAGAAAAAATTTCTAATTAGTGTACATATTTCCAGAAACCTCTTTCTTGTTTCATTTTTAGAATAATTGATTGTAAACTTTTACTATTGTCCTACAGAAACAAGTGTTTCATTATCAAAAATAAAATAAAATTCTCCCTTAAAAAGTTAAAAAGACAAAATAGTTTTGAGTTTTATTTTGGACGACTCAATTTTCACCATTATCAGCCCTTTTTTTTTCTTTTGTTTTGATAAGGTTTGAATATTTCAAGATATAAGATGGAGATATTATATTTTGCATTTCTTATAATTCAATTGACACTACATAATTGAAGATCATAAAATTGTTTTACAATTATGCACTTGATAGCTGTGCCTACAACTGAAGTGTACATTTCGCAATTAATGCAAAAACTGGGGGCATTTACTGAGTATTTACTAAATTTACCTTAGGATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACAT-CGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCG</genome_strand>
        <mrna_strand>AATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG............................................................................................................................................................GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACATCCGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTA................................................................................................................................................................................ATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTT-AG.....................................................................................................................................................................GGATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549986" ref_strand="+" ref_description="SGN-E549986 [TUS-5-O17]">
      <seq>cttgcctcagaaaacggaagcatatttccgcggtgtaattgccgttaatcgtgaatatgcatcgatcgtgctgcgttcttgtgtttctctgctcccggagtgtgaaacaacatcgtcactgttgagtagatgtgttgaagcattaagtttggtagacaatggtgacagcattatgaagtgcctcagcgaagttaaagagttgctgccagtggaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcgattgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaagcttcttaacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgctagttttcgattgagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="13319" stop="14823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13619" g_stop="13916" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13917" i_stop="14081" i_length="165">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14082" g_stop="14523" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="739" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E549986" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13619" e_stop="13916"/>
          <exon e_start="14082" e_stop="14523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTG</genome_strand>
        <mrna_strand>CTTGCCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATG-AAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389943" ref_strand="+" ref_description="SGN-E389943 [TUS-4-O17]">
      <seq>cttgtgctcagaaaacggaagcatatttccgcggtgtaattgccgttaatcgtgaatatgcatcgatcgtgctgcgttcttgtgtttctctgctcccggagtgtgaaacaacatcgtcactgttgagtagatgtgttgaagcattaagtttggtagacaatggtgacagcattatgaagtgcctcagcgaagttaaagagttgctgccagtggaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcgattgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaaagcttctttacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="13319" stop="14804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13619" g_stop="13916" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13917" i_stop="14081" i_length="165">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14082" g_stop="14504" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="722" r_length="423" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E389943" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13619" e_stop="13916"/>
          <exon e_start="14082" e_stop="14504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTG-GCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCT</genome_strand>
        <mrna_strand>CTTGTGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTTACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228408" ref_strand="+" ref_description="SGN-E228408 [cLED-3-L4]">
      <seq>ttggctcagaaaacggaagcatatttccgcggtgtaattgccgttaatcgtgaatatgcatcgatcgtgctgcgttcttgtgtttctctgctcccggagtgtgaaacaacatcgtcactgttgagtagatgtgttgaagcattaagtttggtagacaatggtgacagcattatgaagtgcctcagcgaagttaaagagttgctgccagtggaatttcagttaatcgtgaagtccatgaatcggtggttgagcggaagccatgatcagctctatagagttgttgacctttatcttaaggaatacaaagggaagataacagatgaagaaaaagtcataatgtgcaattacatcgattgtagcatcctttcgccacaacttctcatgcatgcggtccaaaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="13320" stop="14611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13620" g_stop="13916" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13917" i_stop="14081" i_length="165">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14082" g_stop="14311" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="527" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E228408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13620" e_stop="13916"/>
          <exon e_start="14082" e_stop="14311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAGGTAAGATACTCCCGATCCCCAATTCACAAAATTCGAATTATGTCACACAAATTAGGATGGGAGAGTATAAATTTTTTTAACCTAGTTCATATAGTTTCCTACTATGAAGGATGCACTTCATTGGTTTTGTCCTTTAATTTGTTAGTTACTCTGTTCTTTCAACAGGAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAA</genome_strand>
        <mrna_strand>TTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG.....................................................................................................................................................................GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E389684" ref_strand="+" ref_description="SGN-E389684 [TUS-4-O17](-)">
      <seq>aaacgccagaatgccattaaggtttgtggtccaagccatgttcattgagcaattgagcacccgccgctctatcctcacgaccactgctgctgacaaccacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaaagcttcttaacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgctagttttcgattgagttctgagaataagatcgatagagggcaaattggatcagtttcatccgcaagctttcggatacttacagctagagatagagcggtaatgggttcgtctaattcatcagaagtatcttacgaggaaaatacaaaagtggaaaagattaattttagtcgaaggtttatgaatggattgaagaacgcattccgagtgccaaagaagaaaacagagacaaaggtggaaaatgtaaaagaggccgaaaatggtaaacaacaacatggagaagttgtggtgatagagaaggatgtgccttttcgcaggcagcctcgttctctagattaaaaaaaatgaagtactttgtttgcacaatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="13880" stop="15171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14180" g_stop="14871" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E389684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E389684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14180" e_stop="14871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTT</genome_strand>
        <mrna_strand>AAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550275" ref_strand="+" ref_description="SGN-E550275 [TUS-5-O17](-)">
      <seq>cacaatcatcacattgatgttctccacagcaaaaacgatgttagtttgggtgcaattctcgaacgagacgcagcacttcgtcaagtttcacagcttaaggcagctatgaacgccacaagctcgcgaatccagagtttagagcaagagttgagtggcatgaaaaagcttcttaacgaatcagatcaaaacgcgaagaatgatttgtcgcataactccgctcgctctgctagttttcgattgagttctgagaataagatcgatagagggcaaattggatcagtttcatccgcaagctttcggatacttacagctagagatagagcggtaatgggttcgtctaattcatcagaagtatcttacgaggaaaatacaaaagtggaaaagattaattttagtcgaaggtttatgaatggattgaagaacgcattccgagtgccaaagaagaaaacagagacaaaggtggaaaatgtaaaagaggccgaaaatggtaaacaacaacatggagaagttgtggtgatagagaaggatgtgccttttcgcaggcagcctcgttctctagattaaaaaaaatgaagtactttgtttgcacaatctttgtagattcatgtgttacttcagcttttgtgaatttctcttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="13977" stop="15217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14277" g_stop="14917" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E550275" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14277" e_stop="14917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTCT</genome_strand>
        <mrna_strand>CACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTGTAGATTCATGTGTTACTTCAGCTTTTG-TGAATTTCTCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334595" ref_strand="+" ref_description="SGN-E334595 [cTOD-23-O17]">
      <seq>ttgtgatcacaatatcccaccaaagctcagcctcgttcctaatttcattcgtcctccctagcttcggagtagtacattttttcccttcaatatacaatcaatcgatcaggattcaagattgttccagttcagatgcttgatgatgactgtcgtcggaaacaatgccttgatttgtcgtcctcagttggcatcttgctgtgcgtcgatgaagttagggattttgaagctacaggcgtgtaattgcaaagctaaatcactgggcttcaacattaccggtaccgaggtgaaaaccaccttcttagcgccggtaaggaaaacggagacttctagaatcgttcatatcaacggaaaatccgcaagttctcatcagccaggatacaattcaaacgatgaaatcagtgcaaacgatttttctggctttcctggtaaaagtatatccctgacttctacaaacgggaattcaacaaacattgtttggcacaaatgctctgtagagaaaagtgacagacaggagttgcttcagcaaaggggctgtgttatatggataactggtctcagtggttcagggaagagcactgtggcatgtgctctaggtcgctgtttacatgctagaggaaaactcagttacatccttgatggtgataatgttcgccatggtctaaatcgtgacctcagttttgcagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="21797" stop="24985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22097" g_stop="22521" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22522" i_stop="23132" i_length="611">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.691" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23133" g_stop="23273" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="566" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23274" i_stop="24564" i_length="1291">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24565" g_stop="24685" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="687" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E334595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22097" e_stop="22521"/>
          <exon e_start="23133" e_stop="23273"/>
          <exon e_start="24565" e_stop="24685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGATCACAATATCCCACCAAAGCTCAGCCTCGTTCCTAATTTCATTCGTCCTCCCTAGCTTCGGAGTAGTACATTTTTTCCCTTCAATATACAATCAATCGATCAGGATTCAAGATTGTTCCAGTTCAGATGCTTGATGATGACTGTCGTCGGAAACAATGCCTTGATTTGTCGTCCTCAGTTGGCATCTTGCTGTGCGTCGATGAAGTTAGGGATTTTGAAGCTACAGGCGTGTAATTGCAAAGCTAAATCACTGGGCTTCAACATTACCGGTACCGAGGTGAAAACCACCTTCTTAGCGCCGGTAAGGAAAACGGAGACTTCTAGAATCGTTCATATCAACGGAAAATCCGCAAGTTCTCATCAGCCAGGATACAATTCAAACGATGAAATCAGTGCAAACGATTTTTCTGGCTTTCCTGGTATTTATATTCTATCGTCTTTTAAAATTTTACATGATATACATATTTTCATCCGTTTTCTTGAGGCACATTATGTTTGTAACCGCTAATCTATTATGGAATGTGCGTGATGTTACTTTTTTGGACTCAAAAGTACATATATTTTAACAATGTATATTTGACTATGATCATGAAAAAGTAGTTGGTGCAATTAGCAATCACGCCACTTTAAAATCTTGAATCTCTCTTTGCACGGAAGCACTGTAAAATTCTGATTTCTGACTCATATGCTGTTTCCTCTTGTATCCTGTGGAAGTATTAGAATGAAAAAGTAGTTGGTGCAATTAGCAATCACACCAGCCGACTTTAAAATCTTGAATCTCTCTTTGTATGGAAGGCTGTCAAATTCTGATTTTTGGCTCATATTGCTATTTCCTGTTGTATCCTGTGGAAGCATTAGAAGTTCTTTACCTCTGATTTTATCTGGATTGTTTGGACATATCTTTTCTTGCTTATGTGCAATAGCCGGACGGTACTCTTTACTTCTGGCTTATTATTTTCAGTGGAGGTATTAAATGTAATTTGCGTGTTAAAAAAGTTATAGTTATTGATGTGGTGAATAATCTAACTAGGTAAAAGTATATCCCTGACTTCTACAAACGGGAATTCAACAAACATTGTTTGGCACAAATGCTCTGTAGAGAAAAGTGACAGACAGGAGTTGCTTCAGCAAAGGGGCTGTGTTATATGGATAACTGGTCTCAGTGGTTCAGGTTTGTTTCACATCCCATAAGCTCATATCTGTTATCAAATTTTCTACACCTTTCCATCACTTTATATTCTTGCAGATACTTTTTACCATTTGATGTAGATGTACTGTATGCTTCTGTATTTTCTTGGTTTGGTTTTGTTTTCTGTACATGCGTATGATACTTCAGAACAGTGCACAAGTCTGAAATGTTATAATCTTCCATTCTGTTACCAACAAATGCATTTGAAGTTTCTCCATAAGCTATTTTTTCAACATACTGTGGGTTTAAATGCAAATTCAAGATTTAAACCAAAAATGTCGCAACCTAACATTTGATTGATTTTGAAGTACTAGTTAGATAGTGTCCTATTTAGTTCTTTTTTTCCTTTTCAGCCTTAGTCAATGGATTCATCTGAAACTATCAGAATTCAAAGATGCTTTTGTAGATCATAAGATTAGGCTTACTCATAAATGGATTTAGTTAGATAGTGTTTTTTTTCCTATTTAGTTCTTTTTTTCCTTTTCGGCCTTGATCAATGGATTCATCTAATACTAGCAGAATTCCATGATGCTTTTGTAGATCATAAGATTAGGCTCTCATAAAAAGAAAGATTAGGCTGTCTTTCGTTTCTGCATCACATTCAGTGTATTTGTAATGATCCCTTCATTTGTAGTAGCATGTTGATATTTGATTATGATTTTTTAGTTACTAGATGGTTAATTGTGGAACTCATGCCAACTTTATTCCTTCTTGAAAATCTGTGATCAGCATTCAGCTATAGTATACTCCTGCAGTTTTATGTTCTCCGCTTCATGCTTAGTTGATTACACTGGAACATCAAGAAATAGCAGAATCATATAAGTATAAAATTTTGGATATTTATCCTACCAGAAGTTTGCTTGATGAATACCGATTTTTCTTGAGTTGCCATTCATCAGTAGACAAGGGAAGAGTTGTAGCTAAAATAATGGAAAACAGTAATTCAAACGTGTCAGCATTCAAATGGTTCACGCGATTGCAATTTCAACCTGGTCTCTTTCAACTGCCTAGTTGAATTCAAAAATTATTTGTAAACAAGCTACTAGTTATTATGAGTGTAGATATGATTAGAAGCACATGGAATGATTGTAGCAAAACATCTTGATACAGGACAAGTTATTTGTTCTCTTGACGTTGCTTAAATCCCCCCCCCCCCCCCCCCCCCGCAAAAAAAAAGGAGAAGAAGGAGGCATCAAGCAATACTTTTATCCTTATTGCTTATATTGCCTGGCATTTCTTTTTTTTCATTTTTAAATATTAAAAATGTTTACAGGGAAGAGCACTGTGGCATGTGCTCTAGGTCGCTGTTTACATGCTAGAGGAAAACTCAGTTACATCCTTGATGGTGATAATGTTCGCCATGGTCTAAATCGTGACCTCAGTTTTGCAGCTGA</genome_strand>
        <mrna_strand>TTGTGATCACAATATCCCACCAAAGCTCAGCCTCGTTCCTAATTTCATTCGTCCTCCCTAGCTTCGGAGTAGTACATTTTTTCCCTTCAATATACAATCAATCGATCAGGATTCAAGATTGTTCCAGTTCAGATGCTTGATGATGACTGTCGTCGGAAACAATGCCTTGATTTGTCGTCCTCAGTTGGCATCTTGCTGTGCGTCGATGAAGTTAGGGATTTTGAAGCTACAGGCGTGTAATTGCAAAGCTAAATCACTGGGCTTCAACATTACCGGTACCGAGGTGAAAACCACCTTCTTAGCGCCGGTAAGGAAAACGGAGACTTCTAGAATCGTTCATATCAACGGAAAATCCGCAAGTTCTCATCAGCCAGGATACAATTCAAACGATGAAATCAGTGCAAACGATTTTTCTGGCTTTCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGTATATCCCTGACTTCTACAAACGGGAATTCAACAAACATTGTTTGGCACAAATGCTCTGTAGAGAAAAGTGACAGACAGGAGTTGCTTCAGCAAAGGGGCTGTGTTATATGGATAACTGGTCTCAGTGGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGAGCACTGTGGCATGTGCTCTAGGTCGCTGTTTACATGCTAGAGGAAAACTCAGTTACATCCTTGATGGTGATAATGTTCGCCATGGTCTAAATCGTGACCTCAGTTTTGCAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351588" ref_strand="+" ref_description="SGN-E351588 [cTOS-12-P11]">
      <seq>aaagagttgcagcattaaaaaaaattaggggggagagatggctccctgctgtggccagagatatgcagtcaagacttcaacgacgttaacacctgtagatggactatgcttccattattcagcactcaatctttcatttcttttactctttatagtttctatggctcatttcagcctgtattttatgttaggccacctgagctgctgtccttgtcagttccagaaaaagacatcgacactgttactgtattgccaaaagaaaggaagaagaatttccttctgattaaattcctttgacatttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="27853" stop="26943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27553" g_stop="27239" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E351588" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27553" e_stop="27239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTATATTAAGTTC</genome_strand>
        <mrna_strand>AAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352284" ref_strand="+" ref_description="SGN-E352284 [cTOS-9-A19]">
      <seq>aaagagttgcagcattaaaaaaaattaggggggagagatggctccctgctgtggccagagatatgcagtcaagacttcaacgacgttaacacctgtagatggactatgcttccattattcagcactcaatctttcatttcttttactctttatagtttctatggctcatttcagcctgtattttatgttaggccacctgagctgctgtccttgtcagttccagaaaaagacatcgacactgttactgtattgccaaaagaaaggaagaagaatttccttctgattaaattcctttgacatttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="27853" stop="26943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27553" g_stop="27239" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E352284" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27553" e_stop="27239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTATATTAAGTTC</genome_strand>
        <mrna_strand>AAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E353717" ref_strand="+" ref_description="SGN-E353717 [cTOS-10-M3]">
      <seq>aaagagttgcagcattaaaaaaaattaggggggagagatggctccctgctgtggccagagatatgcagtcaagacttcaacgacgttaacacctgtagatggactatgcttccattattcagcactcaatctttcatttcttttactctttatagtttctatggctcatttcagcctgtattttatgttaggccacctgagctgctgtccttgtcagttccagaaaaagacatcgacactgttactgtattgccaaaagaaaggaagaagaatttccttctgattaaattcctttgacatttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="27853" stop="26943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27553" g_stop="27239" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E353717" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27553" e_stop="27239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTATATTAAGTTC</genome_strand>
        <mrna_strand>AAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699000" ref_strand="+" ref_description="SGN-E699000 [FA08BA05]">
      <seq>cgcttgagacccagtactacttcgtcgtaactcaaactgtttgggccaacattgtcgccgccggaaacccctgaagaattactcagaaatcagcgacgatgggtggtgaccggtgtagaagcacgagtagcagtagcagcagcagtgaagaggatggagatgctgattggagagccgccatagattctgttgctgctacaactacatttggcaaaactaccgccaaaattcattcatcaactactgctactaacggagaatctattgcccatccattccaagaagatgaaatagatactatccaaccccagaagctcaaacattatcaaataaagggcctgaagactttggaagacattttagacaagactttagacatagtgagacgcgttgatgatgcttcacaggaagaaacaccctcaatgaatggaggtggagtccggttgtttaggcgtgctccacctgggattctgtttgatcacacagatgaactccaaaaacccagaaagaaaccaagaattcgtcctgggaaggaatttgaggagaactcaaaagagttcaaaaaccaaatcaagtccattgctgttgatgggatggatattttagctgcatctaaaaatgcttgccagaaatcattggccagactagaagcaagagaagcagcagctaaagcagctgctaaaagagaggaagaaagagttgcagcattaaaaaaaattaggggggagagatggctccctgctgtggccagagatatgcagtcaagacttcaacgacgttaacacctgtagatggactatgcttccattattcagcactcaatctttcatttcttttactctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="29895" stop="27101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29596" g_stop="29262" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29261" i_stop="28966" i_length="296">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28965" g_stop="28815" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="486" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28814" i_stop="27882" i_length="933">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27881" g_stop="27811" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="557" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27810" i_stop="27690" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27689" g_stop="27401" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="846" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E699000" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29596" e_stop="29262"/>
          <exon e_start="28965" e_stop="28815"/>
          <exon e_start="27881" e_stop="27811"/>
          <exon e_start="27689" e_stop="27401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTGAGACCCAGTACTACTTCGTCGTAACTCAAACTGTTTGGGCCAACATTGTCGCCGCCGGAAACCCCTGAAGAATTACTCAGAAATCAGCGACGATGGGTGGTGACCGGTGTAGAAGCACGAGTAGCAGTAGCAGCAGCAGTGAAGAGGATGGAGATGCTGATTGGAGAGCCGCCATAGATTCTGTTGCTGCTACAACTACATTTGGCAAAACTACCGCCAAAATTCATTCATCAACTACTGCTACTAACGGAGAATCTATTGCCCATCCATTCCAAGAAGATGAAATAGATACTATCCAACCCCAGAAGCTCAAACATTATCAAATAAAGGTACTTTCTCATTTGCTTACCTGTGTATTACACCTTGCAACTTTTGTTAACTGAGTATTCCAATGATGTTATCGTAATACTCTAGAAATCCCTTCATTTTAATAGATTTGATTCTACGGAGTCTATCTCTATTCTCATACCCTAATTATAGTATGCCTTATCATGCTAGCACTAATAACAGGACAATTGGAACTGTAGTAATTTTCCCTAAAGGCCTTCAACAACATTTTGGTCTATCATGTTTTTGCCATTGCGGTCATTACTTGATGAATAAATTCATGAATGGACACTAACAGGGCCTGAAGACTTTGGAAGACATTTTAGACAAGACTTTAGACATAGTGAGACGCGTTGATGATGCTTCACAGGAAGAAACACCCTCAATGAATGGAGGTGGAGTCCGGTTGTTTAGGCGTGCTCCACCTGGGATTCTGTTTGATCACACAGGTAAAAAAAATAATCTAAAGCAAGTAATTTAATGATTGTTATGTCTGCTTAAATTTGTTTGTTGTTTGTTTGCTTAACATTCTTAAATCCCCACTTTTACTACATTGACCAACCTTGATTAATAGAAGCGTAAGCTTGATACTGTGTTAACATGCTTTCTCTTATGGGATAAAAGTTTATTAGATGCATAATGGAAAAGCCATGTCCTTTACCCATGCTGGAAGGAAGAGGCAGGCCAATTTCTAAATTCTAACAGCAACTTGCGTTCCTTCATCCTAAATTTCCAGGCTATCGTTTAGATTTGAAATTTTTGTTTCACCTACTCTTTATCGCTTTAGTAGAGATGTCAACACTTAACAGAAACTAACTAAAGGAATAATCTACTGAATGACTACCCTTAAATTTTGAGGAGTCAAGCGACCAAACTACAGAAATTTTGGCGGTGGGGGGTTTGTTTAGTGCGTTTTACTTTACTTACTAGACTAATATGATTTGGAATTAATTTGTTCTGATGGTCACTACTTAGATGGAGAAAGTCAAGGATGTGATTGAAAGGAATGATGAAAATTCATATAGAACTTATGGAGTAAGTTCACAAAAATATTAGGCATATTGAATAGACAAAGGACATAAAAACGTCTCTTTTTTCTAATTTATTTTGATTAAGGGGGCAGGGAAAGGATGGGTATCGTGTACTAACTGTTCCTAGACAAATACACCGCGGAATGGATTCATTGCCCAATGACTTACAGGAGGGAGAACTGGGTGAATGAGATGGGTTTTACTACTTTGCCTCCTTCGCGGCCTGAAGTCTGAACACATTGCTATCAGAGCAACTATAGCTACATATTGTTGAGAGGGTGCACACTTTAGATGTCAGTAGTAAGACTAGAGCCTAAAACTAAAACATTTGTCTCCCTGCTTTGTTGCTAGATGAACTCCAAAAACCCAGAAAGAAACCAAGAATTCGTCCTGGGAAGGAATTTGAGGAGAACTCAAAAGAGGTTTGTCTTTTCTACTTCTCGTTTTGATTCATAGTTGGTGAAATCTTTTATTTTGAACTCTCTTTCCACCTCGCTGTTTTGTTATTTCACCTTCTCACTCAGTCCATTATTGTTGCCACAGTTCAAAAACCAAATCAAGTCCATTGCTGTTGATGGGATGGATATTTTAGCTGCATCTAAAAATGCTTGCCAGAAATCATTGGCCAGACTAGAAGCAAGAGAAGCAGCAGCTAAAGCAGCTGCTAAAAGAGAGGAAGAAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTAT</genome_strand>
        <mrna_strand>CGCTTGAGACCCAGTACTACTTCGTCGTAACTCAAACTGTTTGGGCCAACATTGTCGCCGCCGGAAACCCCTGAAGAATTACTCAGAAATCAGCGACGATGGGTGGTGACCGGTGTAGAAGCACGAGTAGCAGTAGCAGCAGCAGTGAAGAGGATGGAGATGCTGATTGGAGAGCCGCCATAGATTCTGTTGCTGCTACAACTACATTTGGCAAAACTACCGCCAAAATTCATTCATCAACTACTGCTACTAACGGAGAATCTATTGCCCATCCATTCCAAGAAGATGAAATAGATACTATCCAACCCCAGAAGCTCAAACATTATCAAATAAAG........................................................................................................................................................................................................................................................................................................GGCCTGAAGACTTTGGAAGACATTTTAGACAAGACTTTAGACATAGTGAGACGCGTTGATGATGCTTCACAGGAAGAAACACCCTCAATGAATGGAGGTGGAGTCCGGTTGTTTAGGCGTGCTCCACCTGGGATTCTGTTTGATCACACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTCCAAAAACCCAGAAAGAAACCAAGAATTCGTCCTGGGAAGGAATTTGAGGAGAACTCAAAAGAG.........................................................................................................................TTCAAAAACCAAATCAAGTCCATTGCTGTTGATGGGATGGATATTTTAGCTGCATCTAAAAATGCTTGCCAGAAATCATTGGCCAGACTAGAAGCAAGAGAAGCAGCAGCTAAAGCAGCTGCTAAAAGAGAGGAAGAAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325614" ref_strand="+" ref_description="SGN-E325614 [cTOC-15-H2]">
      <seq>aaacggtatcgccacaagaagcaatttcaagaacacagtcaacaagatttcttgtttcttggaaaataaaagtgttctgctaaaaccctaattcagagagattatagtcttttacaagaaaggcatcatggggaagaaacaacacagtaaagatcgaatgtttataaccaagacagaatgggcaactgaatggggtggcgctaaatcgaaagaacttaaaaccccttttaaacggcttcccttctattgctgcgctcttacatttacaccgttcgaggacccagtatgcacaaaagatggcaatgtttttgaaataatgcatatagttccatacatcaggaaatatgggaggaatccagtaactggggcacctatgaagcaagaagacttaattcctcttactttccacaagaactctgaaggagaagtatcattgtccggtcttgaacaaggtntttacagagttcacacatatagttgctgtaagaactacgggaaatgttttctgttatgangcagttaaagaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="30648" stop="32424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30948" g_stop="31202" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31203" i_stop="31298" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31299" g_stop="31361" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="318" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31362" i_stop="31451" i_length="90">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31452" g_stop="31555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="422" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31556" i_stop="31913" i_length="358">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31914" g_stop="32005" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="515" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32006" i_stop="32108" i_length="103">
            <donor d_prob="0.947" d_score="0.98"/>
            <acceptor a_prob="0.898" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32109" g_stop="32124" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="531" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E325614" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30948" e_stop="31202"/>
          <exon e_start="31299" e_stop="31361"/>
          <exon e_start="31452" e_stop="31555"/>
          <exon e_start="31914" e_stop="32005"/>
          <exon e_start="32109" e_stop="32124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTTACAAGAAAGGCATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGCGTAAGTTTTTTTCTCTGCTATATTGATTGTTTACATCATTATCGTCTTTTGTGAAGTATATGTTTTGTTAAATTTGGCGTGTAATTTTATATGCAGTCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAATGTCAGTATTTCTTGGATTCAGAGTTTCCGTTTCTTGATGGGATTTTCATCCGGAGTATCCATTATTGTAGTTTTCTTTTTCTTTTTTCAGGCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAGGTAGTACCTTGTTTTGAAGATATCCAATTTGTAATTAGCTTTGGAATTTGACGGGAAATCCAATTTGAACACGAATTTTATACTTAAAAGAACAAAAAAGTTATACTTGTAGTTGTACAATCATTGTATATGTCTTCTGACATTGAATGTGGGATGATCGATAAACACTTATGCCTACTTTTTTCACAGTCATCCGTTCAAACTTCCATCACAGTTTAAGGATGAAATCTTGGGTCTTTAGCCTTTGGTAATCAGGGATAGCTATACCTAGAAATTCTACTAGCTCTAGGGAGGGCAGTCATATTAGTAGTTGTCATTTTCCAGGAAAGGGTTGAAAACTGGTGTTTTATTGTTTCAGGAG-AGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAGGTATGGATATTTGTCTCCTGACCACTATTCATATGTGTCCTTCAAAGAAAAGAGCATCTTCTATTCCTTGTATGGAGAGTTTGATCCTGGCTTTCTTGCTTAGGCAGTTAAAGAACTGA</genome_strand>
        <mrna_strand>AAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTTACAAGAAAGGCATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGC................................................................................................TCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAAT..........................................................................................GCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAG......................................................................................................................................................................................................................................................................................................................................................................GAGAAGTATCATTGTCCGGTCTTGAACAAGGTNTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAN.......................................................................................................GCAGTTAAAGAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550169" ref_strand="+" ref_description="SGN-E550169 [TUS-5-D11]">
      <seq>ctgcgctcttacatttacaccgttcgaggacccagtatgcacaaaagatggcaatgtttttgaaataatgcatatagttccatacatcaggaaatatgggaggaatccagtaactggggcacctatgaagcaagaagacttaattcctcttactttccacaagaactctgaaggagagtatcattgtccggtcttgaacaaggtttttacagagttcacacatatagttgctgtaagaactacgggaaatgttttctgttatgaggcagttaaagaactgaatatcaaaacaaagaactggaaggagcttctcactgatgaagcattctctagagaagaccttataacaattcaaaatcctaatgcactggacaccaaggtgcttctagattttgatcatgttaagaaaaatttaaaggttgacgatgaagaaatacagaaaatgcattctgacccaacatacaacataaatattactggggacatcaagcaaatgctcaaggaacttggaagtgagaaagcgaaagagattgcactgcatggtggaggtgggaacaaggcacagaatgaaagagctgctgctcttgaggctattttagctgcaagatcacgtatncaagatgacgcgaaaaacaaagaaaatggtgaaaggacagcgcagcagactttcagcattgtggatgctgcatctgcgtcagttcatggaagaagtgctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="30994" stop="33034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31197" g_stop="31202" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31203" i_stop="31298" i_length="96">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31299" g_stop="31361" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="69" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31362" i_stop="31451" i_length="90">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31452" g_stop="31555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="173" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31556" i_stop="31913" i_length="358">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31914" g_stop="32005" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="265" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32006" i_stop="32108" i_length="103">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32109" g_stop="32198" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="355" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32199" i_stop="32290" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32291" g_stop="32366" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="431" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32367" i_stop="32445" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.585" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32446" g_stop="32734" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="720" r_length="289" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E550169" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31197" e_stop="31202"/>
          <exon e_start="31299" e_stop="31361"/>
          <exon e_start="31452" e_stop="31555"/>
          <exon e_start="31914" e_stop="32005"/>
          <exon e_start="32109" e_stop="32198"/>
          <exon e_start="32291" e_stop="32366"/>
          <exon e_start="32446" e_stop="32734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCGCGTAAGTTTTTTTCTCTGCTATATTGATTGTTTACATCATTATCGTCTTTTGTGAAGTATATGTTTTGTTAAATTTGGCGTGTAATTTTATATGCAGTCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAATGTCAGTATTTCTTGGATTCAGAGTTTCCGTTTCTTGATGGGATTTTCATCCGGAGTATCCATTATTGTAGTTTTCTTTTTCTTTTTTCAGGCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAGGTAGTACCTTGTTTTGAAGATATCCAATTTGTAATTAGCTTTGGAATTTGACGGGAAATCCAATTTGAACACGAATTTTATACTTAAAAGAACAAAAAAGTTATACTTGTAGTTGTACAATCATTGTATATGTCTTCTGACATTGAATGTGGGATGATCGATAAACACTTATGCCTACTTTTTTCACAGTCATCCGTTCAAACTTCCATCACAGTTTAAGGATGAAATCTTGGGTCTTTAGCCTTTGGTAATCAGGGATAGCTATACCTAGAAATTCTACTAGCTCTAGGGAGGGCAGTCATATTAGTAGTTGTCATTTTCCAGGAAAGGGTTGAAAACTGGTGTTTTATTGTTTCAGGAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAGGTATGGATATTTGTCTCCTGACCACTATTCATATGTGTCCTTCAAAGAAAAGAGCATCTTCTATTCCTTGTATGGAGAGTTTGATCCTGGCTTTCTTGCTTAGGCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAAGTAAGCTTTTAAACTACTATCCTTCCTCTTAACTGTTATAGATGATTAATGAGAATGTTGTTTATATGATATATTTGAACATCTAACTGCAGAATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAGGTGAGTGATTCTCTTAATTACACAGGTTTTGCTGCAATTATGGTCCACTTCTTCTAATTAGTGCTTGGTACTTCATCAGAAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCTTGAGGCTATTTTAGCTGCAAGATCACGTATCAAAGATGACGCGAAAACAAAAGAAAATGGTGAAGGAACAGCGCAGCAGACTTTCAGCATTGTGGATGCTGCATCTGCGTCAGTTCATGGAAGAAGTGCTGCTGC</genome_strand>
        <mrna_strand>CTGCGC................................................................................................TCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAAT..........................................................................................GCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAG......................................................................................................................................................................................................................................................................................................................................................................GAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAG.......................................................................................................GCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAA............................................................................................AATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAG...............................................................................AAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCTTGAGGCTATTTTAGCTGCAAGATCACGTATNCAAGATGACGCGAAAAACAAAGAAAATGGTGAAAGGACAGCGCAGCAGACTTTCAGCATTGTGGATGCTGCATCTGCGTCAGTTCATGGAAGAAGTGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233069" ref_strand="+" ref_description="SGN-E233069 [cLED-6-M16]">
      <seq>tgcgctcttacatttacaccgttcgaggacccagtatgcacaaaagatggcaatgtttttgaaataatgcatatagttccatacatcaggaaatatgggaggaatccagtaactggggcacctatgaagcaagaagacttaattcctcttactttccacaagaactctgaaggagagtatcattgtccggtcttgaacaaggtttttacagagttcacacatatagttgctgtaagaactacgggaaatgttttctgttatgaggcagttaaagaactgaatatcaaaacaaagaactggaaggagcttctcactgatgaagcattctctagagaagaccttataacaattcaaaatcctaatgcactggacaccaaggtgcttctagattttgatcatgttaagaaaaatttaaaggttgacgatgaagaaatacagaaaatgcattctgacccaacatacaacataaatattactggggacatcaagcaaatgctcaaggaacttggaagtgagaaagcgaaagagattgcactgcatggtggaggtgggaacaaggcacagaatgaaagagctgctgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="30994" stop="32899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31198" g_stop="31202" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31203" i_stop="31298" i_length="96">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31299" g_stop="31361" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="68" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31362" i_stop="31451" i_length="90">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31452" g_stop="31555" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="172" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31556" i_stop="31913" i_length="358">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31914" g_stop="32005" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="264" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32006" i_stop="32108" i_length="103">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32109" g_stop="32198" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="354" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32199" i_stop="32290" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32291" g_stop="32366" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="430" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32367" i_stop="32445" i_length="79">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.585" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32446" g_stop="32599" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="584" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E233069" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31198" e_stop="31202"/>
          <exon e_start="31299" e_stop="31361"/>
          <exon e_start="31452" e_stop="31555"/>
          <exon e_start="31914" e_stop="32005"/>
          <exon e_start="32109" e_stop="32198"/>
          <exon e_start="32291" e_stop="32366"/>
          <exon e_start="32446" e_stop="32599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGCGTAAGTTTTTTTCTCTGCTATATTGATTGTTTACATCATTATCGTCTTTTGTGAAGTATATGTTTTGTTAAATTTGGCGTGTAATTTTATATGCAGTCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAATGTCAGTATTTCTTGGATTCAGAGTTTCCGTTTCTTGATGGGATTTTCATCCGGAGTATCCATTATTGTAGTTTTCTTTTTCTTTTTTCAGGCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAGGTAGTACCTTGTTTTGAAGATATCCAATTTGTAATTAGCTTTGGAATTTGACGGGAAATCCAATTTGAACACGAATTTTATACTTAAAAGAACAAAAAAGTTATACTTGTAGTTGTACAATCATTGTATATGTCTTCTGACATTGAATGTGGGATGATCGATAAACACTTATGCCTACTTTTTTCACAGTCATCCGTTCAAACTTCCATCACAGTTTAAGGATGAAATCTTGGGTCTTTAGCCTTTGGTAATCAGGGATAGCTATACCTAGAAATTCTACTAGCTCTAGGGAGGGCAGTCATATTAGTAGTTGTCATTTTCCAGGAAAGGGTTGAAAACTGGTGTTTTATTGTTTCAGGAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAGGTATGGATATTTGTCTCCTGACCACTATTCATATGTGTCCTTCAAAGAAAAGAGCATCTTCTATTCCTTGTATGGAGAGTTTGATCCTGGCTTTCTTGCTTAGGCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAAGTAAGCTTTTAAACTACTATCCTTCCTCTTAACTGTTATAGATGATTAATGAGAATGTTGTTTATATGATATATTTGAACATCTAACTGCAGAATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAGGTGAGTGATTCTCTTAATTACACAGGTTTTGCTGCAATTATGGTCCACTTCTTCTAATTAGTGCTTGGTACTTCATCAGAAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCT</genome_strand>
        <mrna_strand>TGCGC................................................................................................TCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAAT..........................................................................................GCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAG......................................................................................................................................................................................................................................................................................................................................................................GAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAG.......................................................................................................GCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAA............................................................................................AATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAG...............................................................................AAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250071" ref_strand="+" ref_description="SGN-E250071 [cLEG-4-C4]">
      <seq>agaaacatcctgaatttcatgattcaaggtggtgatccaactgggacagggaaaggaggtgagtcgatctggggtaagcccttcaaggatgaagtgcactccaagttgctgcattctggtagaggtgttgttagcatggctaattctggtcctcactcaaatggctcacagttcttcatcctgtacaagtctgccactcacttaaatttcaaacataccgtctttggtatggttgttggaggcttgccaacactttccaccatggagaaagtccctgttgatgacgatgaccgacctctggaagaaatcaagataataagtgtagaagtttatgtaaacccctatgcagagcttgatgaagaagaggagaaaacaaacgatgacaacaaaactgaagatgcagacaatgagaaggttggatcatggtacagcaatcctggaactggaacctcagagattcaagctgttggcagtggaattgggaagtatttgaaagccaaggctgcacaggctgattccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="34037" stop="36284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34195" g_stop="34205" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34206" i_stop="34336" i_length="131">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34337" g_stop="34625" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="300" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34626" i_stop="35658" i_length="1033">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35659" g_stop="35766" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="408" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35767" i_stop="35871" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35872" g_stop="35984" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="521" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E250071" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34195" e_stop="34205"/>
          <exon e_start="34337" e_stop="34625"/>
          <exon e_start="35659" e_stop="35766"/>
          <exon e_start="35872" e_stop="35984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACATCCGGTAATTATTACCTTTTTTACTTGAAAATAGTTGTAAAATCTTTTTCTTTATCAAAAAAATAAAATAAATAAATCTCTGTTTATCAATAGGAAATATTGAATGTCAAGGAACTTATTTGTCCACTTTTGCAGGAATTTCATGATTCAAGGTGGTGATCCAACTGGGACAGGGAAAGGAGGTGAGTCGATCTGGGGTAAGCCCTTCAAGGATGAAGTGCACTCCAAGTTGCTGCATTCTGGTAGAGGTGTTGTTAGCATGGCTAATTCTGGTCCTCACTCAAATGGCTCACAGTTCTTCATCCTGTACAAGTCTGCCACTCACTTAAATTTCAAACATACCGTCTTTGGTATGGTTGTTGGAGGCTTGCCAACACTTTCCACCATGGAGAAAGTCCCTGTTGATGACGATGACCGACCTCTGGTTAGTAGGAAGAGTAACTCTATATTTAACTCTCATTCTTCAACTTAGATCTCGAATCATGCCTTGGTGAATCAATGAATATGGTTTGATTGATTAACACTTTAACCAACTTAGGGAGAAGAACTACTATAAAAGACTAGTCATACCAGCAATAGCCGAAATAGCTACTCCATCTATGTGTCTGAAAGCTATGTGGTTAGTTCCCATTGTTGAACCAGTATTGCGTGATTAGACATTGATATACCGAATACTGATACTTCTCAACTATAGTGATCGATCTGATATTTCTCTAATAGGGATTGCTTATTAAATCATAAGAAAGAGTTTCCTAATCCAATATGATCATGTCAAGAATTTCAGTTGAGCTGCTCTGCTTTTGGGATAATTTTTTATTTTTTCATTAAATTACTAGAAACAGCTCATAATCAAAGACCAAACAAGTCAATAATCTGTTTTGACCTGTTAAGCTTTGGGATAAGGATGAGATTTGAAGATCTTTTCAAGTAGACCTGTACTGCATGTGCGTGTTAATTTATCTTCCTCCATTCTTGCAGTCAGTCATCATGCTTAGCTTTTTCTATCTGTGGTTATCAAAATGGTATGCTAACAATTTTTTTTAAAAATGAATTACTTGTCTAAAGAGAAATAGGGGGAAAGATCTTTCATTCCCAAAGTTCGACTTGATTTTCAGGTTTCAGTAGAAAGTGGAGTGATAGGATCATATCAGGATATGATACATATGTAAAGAGCTGTAAAAAGACTGTAGTTGTGCCATTTCTGCCAATTGTGAGCTGTTGGGTTGTTTTATACCGTCACATTTAATACTTTCATTTTCCAAAGAAGACTTTATGTTCTTCCAGATATCATTTATTTGTTCATTTGTCTGGCTATTTTTGTTCAATCCTCCATTTATCTTCATTTCTGTCCAAGAAAGCCCAGACTTGAAAATCTTGCTGCTTTTTCTCTGCATATCCAGTATTTTCATTTCTCAATCTAGATATTTTTTGAACCTTTTGCTTTACTGTCTGTGCAGGAAGAAATCAAGATAATAAGTGTAGAAGTTTATGTAAACCCCTATGCAGAGCTTGATGAAGAAGAGGAGAAAACAAACGATGACAACAAAACTGAAGATGCAGACAATGTTAGTATTATTCTTTTTTTTAGCCTTTCAATGACATCCATTTTGCTTGTTTTGTTGGATCTGTTAATACTCTCTGTTTATCTCTTTTCTCTTCCTGTGTTCCAGGAGAAGGTTGGATCATGGTACAGCAATCCTGGAACTGGAACCTCAGAGATTCAAGCTGTTGGCAGTGGAATTGGGAAGTATTTGAAAGCAAGGGCTGCACAGGCTGATTCCAA</genome_strand>
        <mrna_strand>AGAAACATCCT...................................................................................................................................GAATTTCATGATTCAAGGTGGTGATCCAACTGGGACAGGGAAAGGAGGTGAGTCGATCTGGGGTAAGCCCTTCAAGGATGAAGTGCACTCCAAGTTGCTGCATTCTGGTAGAGGTGTTGTTAGCATGGCTAATTCTGGTCCTCACTCAAATGGCTCACAGTTCTTCATCCTGTACAAGTCTGCCACTCACTTAAATTTCAAACATACCGTCTTTGGTATGGTTGTTGGAGGCTTGCCAACACTTTCCACCATGGAGAAAGTCCCTGTTGATGACGATGACCGACCTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAATCAAGATAATAAGTGTAGAAGTTTATGTAAACCCCTATGCAGAGCTTGATGAAGAAGAGGAGAAAACAAACGATGACAACAAAACTGAAGATGCAGACAAT.........................................................................................................GAGAAGGTTGGATCATGGTACAGCAATCCTGGAACTGGAACCTCAGAGATTCAAGCTGTTGGCAGTGGAATTGGGAAGTATTTGAAAGCCAAGGCTGCACAGGCTGATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323802" ref_strand="+" ref_description="SGN-E323802 [cTOC-5-J8]">
      <seq>tgctttgaaccaaaatcactaaaggtactactactagtcttgtacatttattgtttgatgtggcaagagagatacgtaacccttttagtgttaaatggatactttgtttaggttagttagccttcaacaacaacaacaacaacaatctgatcaatactcttttaactccagcagaacttcaagcagctctagatcttctaacaaacaaaacagcacatacaattatcatccacatcataatcatcaagacgaagaatgcttcaactttttcatggatgaagatgatttctcttcttcttcttctaaacacaacaactatcctcctcctcattacaatcaatatcaacaaatctccacacccacaactacaagcagtaccccaacacatcaatctcaatctcaatatgatcatcaattctccccagcacgtgatttaaatctcgaattcgcttcctcattttctggaaaatgggccacagacattcttctagaaacttctcgtgccatagccgataagaacagtacacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="41009" stop="42138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41309" g_stop="41838" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E323802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41309" e_stop="41838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTTGAACCAAAATCACTAAAGGTACTACTACTAGTCTTGTACATTTATTGTTTGATGTGGCAAGAGAGATACGTAACCCTTTTAGTGTTAAATGGATACTTTGTTTAGGTTAGTTAGCCTTCAACAACAACAACAACAACAATCTGATCAATACTCTTTTAACTCCAGCAGAACTTCAAGCAGCTCTAGATCTTCTAACAAACAAAACAGCACATACAATTATCATCCACATCATAATCATCAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGATGATTTCTCTTCTTCTTCTTCTAAACACAACAACTATCCTCCTCCTCATTACAATCAATATCAACAAATCTCCACACCCACAACTACAAGCAGTACCCCAACACATCAATCTCAATCTCAATATGATCATCAATTCTCCCCAGCACGTGATTTAAATCTCGAATTCGCTTCCTCATTTTCTGGAAAATGGGCCACAGACATTCTTCTAGAAACTTCTCGTGCCATAGCCGATAAGAACAGTACACGTG</genome_strand>
        <mrna_strand>TGCTTTGAACCAAAATCACTAAAGGTACTACTACTAGTCTTGTACATTTATTGTTTGATGTGGCAAGAGAGATACGTAACCCTTTTAGTGTTAAATGGATACTTTGTTTAGGTTAGTTAGCCTTCAACAACAACAACAACAACAATCTGATCAATACTCTTTTAACTCCAGCAGAACTTCAAGCAGCTCTAGATCTTCTAACAAACAAAACAGCACATACAATTATCATCCACATCATAATCATCAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGATGATTTCTCTTCTTCTTCTTCTAAACACAACAACTATCCTCCTCCTCATTACAATCAATATCAACAAATCTCCACACCCACAACTACAAGCAGTACCCCAACACATCAATCTCAATCTCAATATGATCATCAATTCTCCCCAGCACGTGATTTAAATCTCGAATTCGCTTCCTCATTTTCTGGAAAATGGGCCACAGACATTCTTCTAGAAACTTCTCGTGCCATAGCCGATAAGAACAGTACACGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372987" ref_strand="+" ref_description="SGN-E372987 [TUS-32-F11](-)">
      <seq>agtaaacggccccacggatatgaaagcagggatatgacactcttcaaagatgatgatggtgttgcatacctcgtttactcctcagaggacaacagtgagcttcatattggtccacttaatgaagagtacatggacgtgacccaatccatgagaaggattcttgttggacaacacagggaagcccctgctttgttcaaacatgaaggaacctattacatgatcacgtcaggttgcactggttgggctccgaacgaggccctagctcatgcagctgaatcaattatggggccatgggagaccattggaaatccgtgcatcggtgggaacaaagtttttagagaaacaactttctttgctcagagcacatttgtgcttcctttgcctgagctacatggttcctttatttttatggcagatcggtggaatccagctgacttgaaggattcaaggtatgtttggttacctttaagagtatcggggccagtagaccatcctcttgagtacaattttggcttccccttatggtccagagtgtctgtttattggcataaaagatggagacttccttatagatggcaggaaataaattgagtagaggaatcgaaaatcatttgtacaaatatgttttttcaacttttgggttttctaataatttttccataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="46685" stop="45424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46385" g_stop="45724" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E372987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46385" e_stop="45724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTGGTTACCTTTAAGAGTATCGGGGCCAGTAGACCATCCTCTTGAGTACAATTTTGGCTTCCCCTTATGGTCCAGAGTGTCTGTTTATTGGCATAAAAGATGGAGACTTCCTTATAGATGGCAGGAAATAAATTGAGTAGAGGAATCGAAAATCATTTGTACAAATATGTTTTTTCAACTTTTGGGTTTTCTAATAATTTTTCCATA</genome_strand>
        <mrna_strand>AGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTGGTTACCTTTAAGAGTATCGGGGCCAGTAGACCATCCTCTTGAGTACAATTTTGGCTTCCCCTTATGGTCCAGAGTGTCTGTTTATTGGCATAAAAGATGGAGACTTCCTTATAGATGGCAGGAAATAAATTGAGTAGAGGAATCGAAAATCATTTGTACAAATATGTTTTTTCAACTTTTGGGTTTTCTAATAATTTTTCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553975" ref_strand="+" ref_description="SGN-E553975 [cTSC-2-N11]">
      <seq>aaattattagaaaacccaaaagttgaaaaaacatatttgtacaaatgattttcgattcctctactcaatttatttcctgccatctataaggaagtctccatcttttatgccaataaacagacactctggaccataaggggaagccaaaattgtactcaagaggatggtctactggccccgatactcttaaaggtaaccaaacataccttgaatccttcaagtcagctggattccaccgatctgccataaaaataaaggaaccatgtagctcaggcaaaggaagcacaaatgtgctctgagcaaagaaagttgtttctctaaaaactttgttcccaccgatgcacggatttccaatggtctcccatggccccataattgattcagctgcatgagctagggcctcgttcggagcccaaccagtgcaacctgacgtgatcatgtaataggttccttcatgtttgaacaaagcaggggcttccctgtgttgtccaacaagaatccttctcatggattgggtcacgtccatgtactcttcattaagtggaccaatatgaagctcactgttgtcctctgaggagtaaacgaggtatgcaacaccatcatcatctttgaagagtgtcatatccctgctttcatatccgtggggccgtttactgtacagataattaaatggaccagtggggaggtcgcttatggctacgccagtcaaagcttttgtgtagtttgtatcatcaatatgcatccacattacatatttacctgtcttctcattgtaaattacttttggcctctccagtacatttaacttgtacaaatcatgtgtctcattatgttcttctgctgccaaaacaattccttcatttttccaagtccacaaatcttgggatgaatagcaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="45431" stop="46929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45731" g_stop="46629" g_length="899"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="899" r_length="899" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E553975" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45731" e_stop="46629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATTAGAAAACCCAAAAGTTGAAAAAACATATTTGTACAAATGATTTTCGATTCCTCTACTCAATTTATTTCCTGCCATCTATAAGGAAGTCTCCATCTTTTATGCCAATAAACAGACACTCTGGACCATAAGGGGAAGCCAAAATTGTACTCAAGAGGATGGTCTACTGGCCCCGATACTCTTAAAGGTAACCAAACATACCTTGAATCCTTCAAGTCAGCTGGATTCCACCGATCTGCCATAAAAATAAAGGAACCATGTAGCTCAGGCAAAGGAAGCACAAATGTGCTCTGAGCAAAGAAAGTTGTTTCTCTAAAAACTTTGTTCCCACCGATGCACGGATTTCCAATGGTCTCCCATGGCCCCATAATTGATTCAGCTGCATGAGCTAGGGCCTCGTTCGGAGCCCAACCAGTGCAACCTGACGTGATCATGTAATAGGTTCCTTCATGTTTGAACAAAGCAGGGGCTTCCCTGTGTTGTCCAACAAGAATCCTTCTCATGGATTGGGTCACGTCCATGTACTCTTCATTAAGTGGACCAATATGAAGCTCACTGTTGTCCTCTGAGGAGTAAACGAGGTATGCAACACCATCATCATCTTTGAAGAGTGTCATATCCCTGCTTTCATATCCGTGGGGCCGTTTACTGTACAGATAATTAAATGGACCAGTGGGGAGGTCGCTTATGGCTACGCCAGTCAAAGCTTTTGTGTAGTTTGTATCATCAATATGCATCCACATTACATATTTACCTGTCTTCTCATTGTAAATTACTTTTGGCCTCTCCAGTACATTTAACTTGTACAAATCATGTGTCTCATTATGTTCTTCTGCTGCCAAAACAATTCCTTCATTTTTCCAAGTCCACAAATCTTTGGATGAATAGCAACCA</genome_strand>
        <mrna_strand>AAATTATTAGAAAACCCAAAAGTTGAAAAAACATATTTGTACAAATGATTTTCGATTCCTCTACTCAATTTATTTCCTGCCATCTATAAGGAAGTCTCCATCTTTTATGCCAATAAACAGACACTCTGGACCATAAGGGGAAGCCAAAATTGTACTCAAGAGGATGGTCTACTGGCCCCGATACTCTTAAAGGTAACCAAACATACCTTGAATCCTTCAAGTCAGCTGGATTCCACCGATCTGCCATAAAAATAAAGGAACCATGTAGCTCAGGCAAAGGAAGCACAAATGTGCTCTGAGCAAAGAAAGTTGTTTCTCTAAAAACTTTGTTCCCACCGATGCACGGATTTCCAATGGTCTCCCATGGCCCCATAATTGATTCAGCTGCATGAGCTAGGGCCTCGTTCGGAGCCCAACCAGTGCAACCTGACGTGATCATGTAATAGGTTCCTTCATGTTTGAACAAAGCAGGGGCTTCCCTGTGTTGTCCAACAAGAATCCTTCTCATGGATTGGGTCACGTCCATGTACTCTTCATTAAGTGGACCAATATGAAGCTCACTGTTGTCCTCTGAGGAGTAAACGAGGTATGCAACACCATCATCATCTTTGAAGAGTGTCATATCCCTGCTTTCATATCCGTGGGGCCGTTTACTGTACAGATAATTAAATGGACCAGTGGGGAGGTCGCTTATGGCTACGCCAGTCAAAGCTTTTGTGTAGTTTGTATCATCAATATGCATCCACATTACATATTTACCTGTCTTCTCATTGTAAATTACTTTTGGCCTCTCCAGTACATTTAACTTGTACAAATCATGTGTCTCATTATGTTCTTCTGCTGCCAAAACAATTCCTTCATTTTTCCAAGTCCACAAATCTTGGGATGAATAGCAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706632" ref_strand="+" ref_description="SGN-E706632 [FA30CA06]">
      <seq>tgtaggagttctggaaatgatacctattattattaccctggaagaatgtggttggatactgagggaaaccccatacaagctcatgggggaggtattctacacgatcagagaacaaaaatgtattattggtacggtgagtataaagatgggccaacgtatcatgctcacaaaaaaggagcagcacgagttgatgttatcggtgttggttgctattcatccaaagatttgtggacttggaaaaatgaaggaattgttttggcagcagaagaacataatgagacacatgatttgtacaagttaaatgtactggagaggccaaaagtaatttacaatgagaagacaggtaaatatgtaatgtggatgcatattgatgatacaaactacacaaaagctttgactggcgtagccataagcgacctccccactggtccatttaattatctgtacagtaaacggccccacggatatgaaagcagggatatgacactcttcaaagatgatgatggtgttgcatacctcgtttactcctcagaggacaacagtgagcttcatattggtccacttaatgaagagtacatggacgtgacccaatccatgagaaggattcttgttggacaacacagggaagcccctgctttgttcaaacatgaaggaacctattacatgatcacgtcaggttgcactggttgggctccgaacgaggccctagctcatgcagctgaatcaattatggggccatgggagaccattggaaatccgtgcatcggtgggaacaaagtttttagagaaacaactttctttgctcagagcacatttgtgcttcctttgcctgagctacatggntcctttatttttatggcagatcggtggaatccagctgacttgaaggattcaggtatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="49261" stop="45628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48961" g_stop="48776" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48775" i_stop="46647" i_length="2129">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46646" g_stop="45928" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="904" r_length="718" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E706632" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48961" e_stop="48776"/>
          <exon e_start="46646" e_stop="45928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAGGTGAATAACTTGTATGTAATTGTTTTCTCTTTATTTAAATTGTTGTTCTGCGTCTTGTAACATAAAGAATTCTGTGCCCCTCCTCTCTTCTCTCCAAGTGTATATACAAGTGAATAGGTATTGGAGCAGGGTTGGAGGCACGCGTCCGGAATATTGTGTGATAAGAATGTGTCATGAAGGCTTAAAGGTAAGTTCTATAGAGTTGTGGTTAGACCTATATTGTTATTGGGGCAAAGTTAAGAACACACACCTTTAGAAGATAAAGGGTGGTAGAGATGAGGATGCTCAGATGGATATGTGGACATTTTAGGAGAGATAAGATTAGAAACGAAGTTATACAAGACAAGGTGTGGGAGTGGCTCCGTTGTGGACAAGATGACAAAAGCAAGACTAAGATGATTCGGGCATGTGATAGGAGATGAAGTGGTGTGTCCGAGGTTGGCTATGACAGGTTTTAGGAGAGATAGAGATAGGCCGAAAAAGAACTAGTGGAAGTTGATTAGACGGAACATAACATATCTTCAGCTTACCGAGGACATATTCCTAGATATGAAGGTATGGAAGTCAAGGATTAGATAGAAGGATAGCAGGTAACTGAGTGTTATAGTACTTTATGTGGAAGAGGAAGGGGTTAGTCTCCTCTTCTCATGTTCTCCTTCTTTTGTAGTATTATTTAGTATTTGTGTATCTTATTCTTCAATTGTATTACTATATACTTCTTCATTTGCTCCGTCTATCTTGCTATTTTTTTTTTTTTGTTATTTTCCTTCCAATCCTGCTTTCATTACATTTCTTTTGAGCCATCGGAAACAACTTCTCTACTCCACAAAGGTAGAGGTAAGATTTGTGTATATTCTACCCTCCCAAGACCCCACTCGTGAAACTACAATGGGTATGTTGTTGTTTTCTCATAGTGTACTCTTAATCAACGCCTCTTTCCCTGTTTTGGATGAGTATCTCATTTGCCAACCTGCAAGCCTCCTTTGGGTTCCGACTGGAATAAATGATACCAAAATGTTGTCTTTGAATTCTGGAACTTCTCTCATCGACTGGAATAATCTCATATTCCTTTTCATTCCATGTAGTCCAAAAATGGCATGGTAGCTAAAGTTTTTTAAGCTACTTTCCTCTCCTTGCCCTTCAACTTCAGTTTCTAACTTTATCTTCAGTGTACCCGATCAAAGTCCAATAAGGAGGACACTATCACCAAAGCTGTGAGGCTACTGTACATTGTAAAGTTAAATGATTAGCAACCTCCTGTTACCCTCCTTGTACAGACTACACCAAATACCAATAATCGATTTCCTCTTTCTAACTTCTAAGTCTGTTTTGCAGTAAGAATTGTATCCACCATAACCATGTGAAGAAAGTCGCTTTCTTCCTCACATGTCCATATCCTCTTCCATCCTGTCTTATTTGGCACCCTTGTTTGTGATAGACTTTGCTAATTGGATCTCACTGAAAATGTTCTGTAGAGGCCATGTTGAACACATTACATGACAATGCTCTTTTTTTTTTTTAGCTGTAAATATCTTCCTGTATTTTGTATCGAAAAAAAATACAAGAAAAAGATCTCAATGAAAATGTGTTGGTTCCTAGCCCCTTCCCTACCATTTATCCTACTCACCTTCTGCTATAGTGTAACTGAATTGTTTTCATTGGACACTTCCTCCCATTCCCTACCCCACAGTGACTTAACCAACCAATCAGCGGTCGATTACCAAATAAACAATCTTAAGCAGTTTTGTAAGACTTTTGTACACTTGAGAAGCATTTGGAAAATCATTTGAGCATGAGTGCCTCTTAAAGGGACATTGTGGTGTCAACCGTCTTAGATGAGTGACCTAATGGGGTGATCTCTTAGATATCAGGCTTGATACAAACATTGGCACTGTATCATATGCATAGAGATAAATGAGCTGTTCTTTATATTTATGTATAGGTTATGAGACATTTCCTTGGTTCCTAGATTAATGATTACTCGTCCATTATCTAGATTGGTTTTGCTTTTTTGGCTAAGGGTGATTTATTCTTCATCTTTGGAATTAGTTTTAGCTTTAATTTTTCGGCTTTTCATCCCTATTCTGTTATTCTTTCAGGTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTG</genome_strand>
        <mrna_strand>TGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGNTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTC-AGGTATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372988" ref_strand="+" ref_description="SGN-E372988 [TUS-32-F11]">
      <seq>gcacgtgctgtcaaacggaagcctaagcgaccaaccaccttgattgaagaatttcttgacgaggcttcgcagctaaggcatgtcttttttcctggtctaagaactgcaatagatccttgtaggagttctggaaatgatacctattattattaccctggaagaatgtggttggatactgagggaaaccccatacaagctcatgggggaggtattctacacgatcagagaacaaaaatgtattattggtacggtgagtataaagatgggccaacgtatcatgctcacaaaaaaggagcagcacgagtaagtcctggatttcatacacttttataggttgatgttatcggtgttggttgctattcatccaaagatttgtggacttggaaaaatgaaggaattgttttggcagcagaagaacataatgagacacatgatttgtacaagttaaatgtactggagaggccaaaagtaatttacaatgagaagacaggtaaatatgtaatgtggatgcatattgatgatacaaactacacaaaagctttgactggcgtagccataagcgacctccccactggtccatttaattatctgtacagtaaacggccccacggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="49378" stop="46065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49078" g_stop="48746" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48745" i_stop="46647" i_length="2099">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46646" g_stop="46365" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="615" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E372988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49078" e_stop="48746"/>
          <exon e_start="46646" e_stop="46365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAGGTGAATAACTTGTATGTAATTGTTTTCTCTTTATTTAAATTGTTGTTCTGCGTCTTGTAACATAAAGAATTCTGTGCCCCTCCTCTCTTCTCTCCAAGTGTATATACAAGTGAATAGGTATTGGAGCAGGGTTGGAGGCACGCGTCCGGAATATTGTGTGATAAGAATGTGTCATGAAGGCTTAAAGGTAAGTTCTATAGAGTTGTGGTTAGACCTATATTGTTATTGGGGCAAAGTTAAGAACACACACCTTTAGAAGATAAAGGGTGGTAGAGATGAGGATGCTCAGATGGATATGTGGACATTTTAGGAGAGATAAGATTAGAAACGAAGTTATACAAGACAAGGTGTGGGAGTGGCTCCGTTGTGGACAAGATGACAAAAGCAAGACTAAGATGATTCGGGCATGTGATAGGAGATGAAGTGGTGTGTCCGAGGTTGGCTATGACAGGTTTTAGGAGAGATAGAGATAGGCCGAAAAAGAACTAGTGGAAGTTGATTAGACGGAACATAACATATCTTCAGCTTACCGAGGACATATTCCTAGATATGAAGGTATGGAAGTCAAGGATTAGATAGAAGGATAGCAGGTAACTGAGTGTTATAGTACTTTATGTGGAAGAGGAAGGGGTTAGTCTCCTCTTCTCATGTTCTCCTTCTTTTGTAGTATTATTTAGTATTTGTGTATCTTATTCTTCAATTGTATTACTATATACTTCTTCATTTGCTCCGTCTATCTTGCTATTTTTTTTTTTTTGTTATTTTCCTTCCAATCCTGCTTTCATTACATTTCTTTTGAGCCATCGGAAACAACTTCTCTACTCCACAAAGGTAGAGGTAAGATTTGTGTATATTCTACCCTCCCAAGACCCCACTCGTGAAACTACAATGGGTATGTTGTTGTTTTCTCATAGTGTACTCTTAATCAACGCCTCTTTCCCTGTTTTGGATGAGTATCTCATTTGCCAACCTGCAAGCCTCCTTTGGGTTCCGACTGGAATAAATGATACCAAAATGTTGTCTTTGAATTCTGGAACTTCTCTCATCGACTGGAATAATCTCATATTCCTTTTCATTCCATGTAGTCCAAAAATGGCATGGTAGCTAAAGTTTTTTAAGCTACTTTCCTCTCCTTGCCCTTCAACTTCAGTTTCTAACTTTATCTTCAGTGTACCCGATCAAAGTCCAATAAGGAGGACACTATCACCAAAGCTGTGAGGCTACTGTACATTGTAAAGTTAAATGATTAGCAACCTCCTGTTACCCTCCTTGTACAGACTACACCAAATACCAATAATCGATTTCCTCTTTCTAACTTCTAAGTCTGTTTTGCAGTAAGAATTGTATCCACCATAACCATGTGAAGAAAGTCGCTTTCTTCCTCACATGTCCATATCCTCTTCCATCCTGTCTTATTTGGCACCCTTGTTTGTGATAGACTTTGCTAATTGGATCTCACTGAAAATGTTCTGTAGAGGCCATGTTGAACACATTACATGACAATGCTCTTTTTTTTTTTTAGCTGTAAATATCTTCCTGTATTTTGTATCGAAAAAAAATACAAGAAAAAGATCTCAATGAAAATGTGTTGGTTCCTAGCCCCTTCCCTACCATTTATCCTACTCACCTTCTGCTATAGTGTAACTGAATTGTTTTCATTGGACACTTCCTCCCATTCCCTACCCCACAGTGACTTAACCAACCAATCAGCGGTCGATTACCAAATAAACAATCTTAAGCAGTTTTGTAAGACTTTTGTACACTTGAGAAGCATTTGGAAAATCATTTGAGCATGAGTGCCTCTTAAAGGGACATTGTGGTGTCAACCGTCTTAGATGAGTGACCTAATGGGGTGATCTCTTAGATATCAGGCTTGATACAAACATTGGCACTGTATCATATGCATAGAGATAAATGAGCTGTTCTTTATATTTATGTATAGGTTATGAGACATTTCCTTGGTTCCTAGATTAATGATTACTCGTCCATTATCTAGATTGGTTTTGCTTTTTTGGCTAAGGGTGATTTATTCTTCATCTTTGGAATTAGTTTTAGCTTTAATTTTTCGGCTTTTCATCCCTATTCTGTTATTCTTTCAGGTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATAT</genome_strand>
        <mrna_strand>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292664" ref_strand="+" ref_description="SGN-E292664 [cLET-11-G2]">
      <seq>gcacgtgctgtcaaacggaagcctaagcgaccaaccaccttgattgaagaatttcttgacgaggcttcgcagctaaggcatgtcttttttcctggtctaagaactgcaatagatccttgtaggagttctggaaatgatacctattattattaccctggaagaatgtggttggatactgagggaaaccccatacaagctcatgggggaggtattctacacgatcagagaacaaaaatgtattattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="49378" stop="48533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49078" g_stop="48833" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E292664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49078" e_stop="48833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGG</genome_strand>
        <mrna_strand>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312373" ref_strand="+" ref_description="SGN-E312373 [cTOA-5-N13]">
      <seq>ggaagttctgtggagagagaaagagaaggagatcggggaagtaatcttagataggtggaatttagggggccaagggaagatctttggtctcaagttatcatcattattaacattccaagatccaataaacagcttattctataacctttttctactccttaacccttatcttccccttcaatttggtaggttggggcaagatattgcagaaattaacttttcaacagctagttaagcagctgatcttgaggggaacttcatatgcgcagaacttgatgattagctcaactgactgagcaacttcgattgaaacatatgtcgagagatttcgttcaatcttcagtttggttgttttcggcattacattaagataaaaagggaacaaaatgaggttgaagaacaaatccaggaatctaacgactatacgttgctatccaggacgcagatgctcattttcagttctcttatggagtatagtcggttgccttgttttacttaatctatattgctttattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="50982" stop="48896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50682" g_stop="50325" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50324" i_stop="49356" i_length="969">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49355" g_stop="49196" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="518" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E312373" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50682" e_stop="50325"/>
          <exon e_start="49355" e_stop="49196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTGCTGTGGAGAGAGAAAGAGAAGGAGATCGGAGAAGTAAGCTTAGATAGGTGGAATTTAGGGGGCCAAGGGAAGATCTTTGGTCTCAAGTTATCATCATTATTAACATTCCAAGATCCAATAAACAGCTTATTCTATAACCTTTTTCTACTCCTTAACCCTTATCTTCCCCTTCAATTTGGTAGGTTGGGGCAAGATATTGCAGAAATTAACTTTTCAACAGCTAGTTAAGCAGCTGATCTTGAGGGGAACTTCATATGCGCAGAACTTGATGATTAGCTCAACTGACTGAGCAACTTCGATTGAAACATATGTCGAGAGATTTCGTTCAATCTTCAGTTTGGTTGTTTTCGGGTAAGCTTGTTTCCACCCACTTTTACCACAATTTGACTCTTATACTTCCCCTTTTTCTTCTTCCTTTATGAGAATTAAACTATTTCAATTAACTGCCTTGCATATTTTTGTCAAGACTTTGTGGGCTTTTTGCTGATAAAGGTTCACAAACTGTGGATCTTGAGCTGGTCAATGCTGAAACTTTTGCTTTTATGTTAATTGATAGTCAAGATCATAGAGGATTGCAATTGCATCGTAACAGACAATTTGTGTAGATAGTTTATGTTTTTCTTGTGATAAAGTTGCAATCTCTCGGTTGATATTGAGAAGCACATTGTAGCAGCAGGGATTGAAGTTGGAGTTTAAGCTGAGACTTATCTCAACTCCCACAAAAAACGATAAAGAAGAAGATGCAAACCTTAAACCTTCCAAACATTCTATGTGCGGTTTATACTTCAATAACTTTAGTAGGGGGATTGGCCTCTATTTTATAGAGGGCCTACCCATCACAAAGTTATAGGTGAAATGGGTCTCAACTCACCTATATGTAATTGGGATTAAGGTTTATGTTTTATTTAAAACTTGGACCATGCCGTATCCTTTCAAGCTATAGTCAATGTAGAATTGAATTCTGACAATCTAATCAAATATTCTGTTATAAGCGATTAAGAAGTTGTGTATGCTCAATCATAAACATGTTCCATTTGTTTGTGTCTTTTGTTGGTGCTCAAGAAATCTGCTAGAGTGATTTGATTGTGCATGTATGATATTGTCGGCAGTCAACTATGATGGAGTTATAAACTTCAGAAAACTTGATTTAGTCATTTCTCTGCTTGTTGATACAAGTTACACAGTTTCATTTATTACAAAATATTTACCTTTACTGAGAGAGATGTGTGGGTACATTCAAACACAAGTACGTATTGTATATGCTCCACATAAACTGGCTATAGTTCTGAGTCTCCATTGGTTTGATTTTCTTTACTGCAGCATTACATTAAGATAAAAAGGGAACAAAATGAGGTTGAAGAACAAATCCAGGAATCTAACGACTATACGTTGCTATCCAGGACGCAGATGCTCATTTTCAGTTCTCTTATGGAGTATAGTCGGTTGCCTTGTTTTACTTAATCTATATTGCTTTATTTTC</genome_strand>
        <mrna_strand>GGAAGTTCTGTGGAGAGAGAAAGAGAAGGAGATCGGGGAAGTAATCTTAGATAGGTGGAATTTAGGGGGCCAAGGGAAGATCTTTGGTCTCAAGTTATCATCATTATTAACATTCCAAGATCCAATAAACAGCTTATTCTATAACCTTTTTCTACTCCTTAACCCTTATCTTCCCCTTCAATTTGGTAGGTTGGGGCAAGATATTGCAGAAATTAACTTTTCAACAGCTAGTTAAGCAGCTGATCTTGAGGGGAACTTCATATGCGCAGAACTTGATGATTAGCTCAACTGACTGAGCAACTTCGATTGAAACATATGTCGAGAGATTTCGTTCAATCTTCAGTTTGGTTGTTTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTACATTAAGATAAAAAGGGAACAAAATGAGGTTGAAGAACAAATCCAGGAATCTAACGACTATACGTTGCTATCCAGGACGCAGATGCTCATTTTCAGTTCTCTTATGGAGTATAGTCGGTTGCCTTGTTTTACTTAATCTATATTGCTTTATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547080" ref_strand="+" ref_description="SGN-E547080 [TUS-70-M11](-)">
      <seq>attaaatgatatcggggaaaatagcgtaggaacaatttgtgacccttcttctggtgcacctaattacagcttcacacctgatctgtgcccaaaggatactatcccaattgaagatctgaaatatgttctgtcaaaagtcacatgttatgaaggaaattcttcaggaaattgcgcgggtgaaggaagattcattccacaggcctcatctgtgatattattcgcttatactcaatctattcaagacctgatagaaatattccctgatttgctgagcctaagtcagtgctccaaagtaaaacaagcattcgccaacattttacagtaccagtgcaggccatttagacgttcagcacgagtactatggtcatctatgttgtcactctccattctcatgatacttttagtactaacattgatagtaaaagctcaccaagaaactggaagaagcttcgatacatgctccattactcctaaaaaagtcgaaacaataccaaaaaacttgccagattgcagtaattctgcaggcaatgtacagaatatgtagatggtttgcatttttttttctttttttgtagttatagatggaagtatacagtatacccattcccctgaagtcgtaagacgccaaaaaaatgggggtttaagttatagaaaatagaaatagagaattcttactaaacttgtacttgatatattgttcttgtcatgtacacgacttaataactgtgtacatatttgacatgaacagtgattgatgggtactagaggctaactttggccttgtaaatttgctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="55387" stop="53897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55087" g_stop="54964" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54963" i_stop="54868" i_length="96">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54867" g_stop="54198" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="795" r_length="671" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="796" polyA_stop="806"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E547080" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55087" e_stop="54964"/>
          <exon e_start="54867" e_stop="54198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATATGTAAGTTACAAGCTTTAACATACTGAACATATATAAGGATCTTTATGTCTCATGTCCAGTGAAAATTTGGAATTTTTTTTTAATGTTTGCCTGTAGGTTCTGTCAAAAGTCACATGTTATGAAGGAAATTCTTCAGGAAATTGCGCGGGTGAAGGAAGATTCATTCCACAGGCCTCATCTGTGATATTATTCGCTTATACTCAATCTATTCAAGACCTGATAGAAATATTCCCTGATTTGCTGAGCCTAAGTCAATGCTCCAAAGTAAAACAAGCATTCGCCAACATTTTACAGTACCAGTGCAGGCCATTTAGACGTTCAGCACGAGTACTATGGTCATCTATGTTGTCACTCTCCATTCTCATGATACTTTTAGTACTAACATTGATAGTAAAAGCTCACCAAGAAACTGGAAGAAGCTTTGATACATGCTCCATTACTCCTAAAAAAGTTGAAACAATACCAAAAACCTTGCCAGATTGCAGTAATTCTGCAGACAATGTACAGAAAATGTAGATGCTTTGCATTTTTTTTTCTTTTTTTGTAGTTATAGATGGAAGTATACAGTATACCCATTCCCCTGAAGTCGTAAGACGCCAAAAAAATGGGGG-TTAAGTTATAGAAAATAGAAATAGAGAATTCTTACTAAACTTGTACTTGATATATTGTTCTTGTCATGTACACGACTTAATAACTGTGTACATATTTGACATGAACAGTGATTGATGGATACTAGAGGCTAACTTTGGCCTTGTAAATTTGCTCA</genome_strand>
        <mrna_strand>ATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCTTCTTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATAT................................................................................................GTTCTGTCAAAAGTCACATGTTATGAAGGAAATTCTTCAGGAAATTGCGCGGGTGAAGGAAGATTCATTCCACAGGCCTCATCTGTGATATTATTCGCTTATACTCAATCTATTCAAGACCTGATAGAAATATTCCCTGATTTGCTGAGCCTAAGTCAGTGCTCCAAAGTAAAACAAGCATTCGCCAACATTTTACAGTACCAGTGCAGGCCATTTAGACGTTCAGCACGAGTACTATGGTCATCTATGTTGTCACTCTCCATTCTCATGATACTTTTAGTACTAACATTGATAGTAAAAGCTCACCAAGAAACTGGAAGAAGCTTCGATACATGCTCCATTACTCCTAAAAAAGTCGAAACAATACCAAAAAACTTGCCAGATTGCAGTAATTCTGCAGGCAATGTACAGAATATGTAGATGGTTTGCATTTTTTTTTCTTTTTTTGTAGTTATAGATGGAAGTATACAGTATACCCATTCCCCTGAAGTCGTAAGACGCCAAAAAAATGGGGGTTTAAGTTATAGAAAATAGAAATAGAGAATTCTTACTAAACTTGTACTTGATATATTGTTCTTGTCATGTACACGACTTAATAACTGTGTACATATTTGACATGAACAGTGATTGATGGGTACTAGAGGCTAACTTTGGCCTTGTAAATTTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E394520" ref_strand="+" ref_description="SGN-E394520 [TUS-14-B17]">
      <seq>ctgtcacacaatgcatcattatcttttagaaagtattttcatgtgtataaaactagagattctgtgaaatttgataatcttatatgagttataagctattacacgatttctactttttctagctgtcttcttgcttttgattttcctgtatagtcagttccttctaacgtatgtttaaatcgatcatcaatgtcatggttagactaatggaatgctgctttggctcagttttactcatttggcactggcctcttggatttataataataatcctctgctgctggattttgacaactctgagttgggtgctgactggttttgatttctttttccatacctttgcagatgacacttgctcagctttgaaggactttcaacagaatcctcagaacaatagcttgcaaattatacttccctgtgcaaatcctggaacttctgacaaaacgttggagcagattggcgccacggttcataatttcattactcaggtactgttatctataatatacaagaaacaaggataggagcttacatatattcttagcattatctttgtgttttcgatttccagcttaattctaagctgagagaggtacaaggattaggattaaatgatatcggggaaaatagcgtaggaacaatttgtgaccccttctctggtgcacctaattacagcttcacacctgatctgtgcccaaaggatactatcccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="56164" stop="54680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55864" g_stop="55600" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55599" i_stop="55514" i_length="86">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.140" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55513" g_stop="55442" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="337" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55441" i_stop="55357" i_length="85">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55356" g_stop="54980" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="714" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E394520" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55864" e_stop="55600"/>
          <exon e_start="55513" e_stop="55442"/>
          <exon e_start="55356" e_stop="54980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAATGTAAGTAAGATTTTGATACTTCTGTTTGACATAGAATCGCTTTTATATTCTCAAAGCCTAATTAAACAGCTCTTATTAACTACTAGAATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATACGTGAGCACAAATTCTTCTCTTCCTCTCAGTAATTCAGCTTAATTTTTCATTTTATACGCCGTAACTTTAGCAAATGCTGATGCAGCTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCTGGAACTTCTGACAAAACGTTGGAGCAGATTGGCGCCACGGTTCATAATTTCATTACTCAGGTACTGTTATCTATAATATACAAGAAACAAGGATAGGAGCTTACATATATTCTTAGCATTATCTTTGTGTTTTCGATTTCCAGCTTAATTCTAAGCTGAGAGAGGTACAAGGATTAGGATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAAT</genome_strand>
        <mrna_strand>CTGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAAT......................................................................................AATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATAC.....................................................................................CTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCTGGAACTTCTGACAAAACGTTGGAGCAGATTGGCGCCACGGTTCATAATTTCATTACTCAGGTACTGTTATCTATAATATACAAGAAACAAGGATAGGAGCTTACATATATTCTTAGCATTATCTTTGTGTTTTCGATTTCCAGCTTAATTCTAAGCTGAGAGAGGTACAAGGATTAGGATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202327" ref_strand="+" ref_description="SGN-E202327 [cLEC-6-D17]">
      <seq>tgtcacacaatgcatcattatcttttagaaagtattttcatgtgtataaaactagagattctgtgaaatttgataatcttatatgagttataagctattacacgatttctactttttctagctgtcttcttgcttttgattttcctgtatagtcagttccttctaacgtatgtttaaatcgatcatcaatgtcatggttagactaatggaatgctgctttggctcagttttactcatttggcactggcctcttggatttataataataatcctctgctgctggattttgacaactctgagttgggtgctgactggttttgatttctttttccatacctttgcagatgacacttgctcagctttgaaggactttcaacagaatcctcagaacaatagcttgcaaattatacttccctgtgcaaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="56163" stop="54966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55863" g_stop="55600" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55599" i_stop="55514" i_length="86">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.140" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55513" g_stop="55442" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="336" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55441" i_stop="55357" i_length="85">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55356" g_stop="55266" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="427" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E202327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55863" e_stop="55600"/>
          <exon e_start="55513" e_stop="55442"/>
          <exon e_start="55356" e_stop="55266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAATGTAAGTAAGATTTTGATACTTCTGTTTGACATAGAATCGCTTTTATATTCTCAAAGCCTAATTAAACAGCTCTTATTAACTACTAGAATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATACGTGAGCACAAATTCTTCTCTTCCTCTCAGTAATTCAGCTTAATTTTTCATTTTATACGCCGTAACTTTAGCAAATGCTGATGCAGCTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCT</genome_strand>
        <mrna_strand>TGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAAT......................................................................................AATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATAC.....................................................................................CTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547081" ref_strand="+" ref_description="SGN-E547081 [TUS-70-M11]">
      <seq>cctcgtgccgaattcggcacgaggcacacaagaataaccaaaagtttcttactagccacaagctatcctaaccttaatgatcaagtcaaggaatgaatttttctcttcttttataccacttttactttttatgttttgcctcaaaaatattcaacatcatactatatcatcatgccaaaattacatggaggggttcttcttcctttcattcttttattaatttccactaatataattgcccagaaatctcttgtatttggcttcattgatcgtgatgaaatttcaaaaagacctgatcctctcagacattttaagtcatataatgggagttataatcttggtgacaagcactattgggcttctgcgggtttcacaggcatacatggatatgcaattgctgggatttggttgttagttggtttggggttttggaagttacatgatttttaagtattttcatgccaattcaagtatttcaatgattgaacattcgccttcttattatattttgatgttctcgctggttgttctgtttacaattcttgccatagttgcaagctgcgttgctttggctgcaaacaatggttttgaacatagagtagaaaagcttcgccgaacaatttttgatgctggtggtgatacatgtcaatccatcagaagggtagtaaaggttttgctaagtatgcaaactcttttaagccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="57880" stop="55843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57579" g_stop="57242" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="360" r_length="335" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57241" i_stop="57146" i_length="96">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57145" g_stop="56958" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="549" r_length="189" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56957" i_stop="56297" i_length="661">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56296" g_stop="56143" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="703" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E547081" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57579" e_stop="57242"/>
          <exon e_start="57145" e_stop="56958"/>
          <exon e_start="56296" e_stop="56143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATACTATATCATCATCATGCCAAAATTACATGGAAGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGCGATCAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCTTGGTGACAAGCACTATTGGGCTGTAAGTTTTTATTTTTTATGATGAGATTAAATTTTTTTAAAAAAGGGAATTAGCTGCTGATTTGTTTTTTTTTTCTTTTCTTTGTTTGTTTATCAGTCTGCGGGTTTCACAGGCATACATGGATATGCAATTGCTGGGATTTGGTTGTTAGTTGGTTT-GGGTTTTGGAAGTTACATGATTTTTAAGTATTTTCATGCCAATTCAACTACTTCAATGATTGAACATTCGCCTTCGTATTATATTTTGATGTTCTCGCTGGTTGTTCTGTTTACAATTCTTGCCATGTAAGTGCTTTTGCTTGCTTAATTTTTGGTAACACTACTATTTAAATAAACATGTGCTCTGTTCCTATAGGAAATACATTAAGCAATCATGTCATATCAATCAACAAATAAGTAAAAAGCGTATAATCTCACAAAATAGTACTTTGGGCATTCCCTTATTTTTACAAGGCATAATACATAAGTTAAGCGCCATGATAACTCTATTACCTTTAACTTTGCGTGTGCACAAGTAGATATTTAAAATTATAAAAATTTGAAAAAATAGACACATTCATCCTACATAGCACCCGACATTGCAATTTTGCATCCTACGTGTATATGCCATGTAGGACACATGTGTTTACTTGTGCACAATCAAAGTTGGACGACACAATTATCCGCTGAAAACCAAGTTAACGGTCATATTTATATATTATGGTTTTTCATAACAGTAAGCTTTCAAAGAGGATTATGATTTAGAACTCATAAACTAAAAAAGAATCTTAGCTCCACCTCTAAATCAAACACATTTTATTGTCCCTATCTTATATTGATGAGGATTAGTGACCTATATATAGGAATAAAGCAATGGAGTACTACAATATTTGATATGTCGTTTATGGCTAAGTTTGATAAGAAAAGACTGACTGATGTGTCTACTACTTTTTGTTTTGTTTGGAAGAGTTGCAAGCTGCGTTGCTTTGGCTGCAAACAATGGTTTTGAACATAGAGTAGAAAGGCTTCGCCGAACAATTTTTGATGCTGGTGGTGATACATGTCAATCCATCAGAAGGGTAATAAAGGTTTTGCTAAGTATGCAAACTCTTTTAAGCCCT</genome_strand>
        <mrna_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATAC--TAT-ATCATCATGCCAAAATTACATGGAGGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGTGATGAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCTTGGTGACAAGCACTATTGGGCT................................................................................................TCTGCGGGTTTCACAGGCATACATGGATATGCAATTGCTGGGATTTGGTTGTTAGTTGGTTTGGGGTTTTGGAAGTTACATGATTTTTAAGTATTTTCATGCCAATTCAAGTATTTCAATGATTGAACATTCGCCTTCTTATTATATTTTGATGTTCTCGCTGGTTGTTCTGTTTACAATTCTTGCCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCAAGCTGCGTTGCTTTGGCTGCAAACAATGGTTTTGAACATAGAGTAGAAAAGCTTCGCCGAACAATTTTTGATGCTGGTGGTGATACATGTCAATCCATCAGAAGGGTAGTAAAGGTTTTGCTAAGTATGCAAACTCTTTTAAGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360835" ref_strand="+" ref_description="SGN-E360835 [cLPP-7-D4]">
      <seq>gtgccgaattcggcacgaggcacacaagaataaccaaaagtttcttactagccacaagctatcctaaccttaatgatcaagtcaaggaatgaatttttctcttcttttataccacttttactttttatgttttgcctcaaaaatattcaacatcatactatatcatcatgccaaaattacatggaggggttcttcttcctttcattcttttattaatttccactaatataattgcccagaaatctcttgtatttggcttcattgatcgtgatgaaatttcaaaaagacctgatcctctcagacattttaagtcatataatgggagttataatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="57880" stop="56964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57579" g_stop="57264" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="334" r_length="313" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E360835" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57579" e_stop="57264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATACTATATCATCATCATGCCAAAATTACATGGAAGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGCGATCAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCT</genome_strand>
        <mrna_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATAC--TAT-ATCATCATGCCAAAATTACATGGAGGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGTGATGAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347032" ref_strand="+" ref_description="SGN-E347032 [cTOF-25-O16]">
      <seq>acaaataaagggggaaggggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69360" stop="73417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69660" g_stop="69819" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="242" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="275" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="397" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73117" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="487" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E347032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69660" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTAT</genome_strand>
        <mrna_strand>ACAAATAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280074" ref_strand="-" ref_description="SGN-E280074 [cLEL-7-D22](-)">
      <seq>gcacgagggaaggggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69367" stop="72926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69665" g_stop="69819" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="237" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="270" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72626" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="390" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E280074" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280074" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69665" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATA</genome_strand>
        <mrna_strand>GCACGAGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E200157" ref_strand="+" ref_description="SGN-E200157 [cLEB-7-P6]">
      <seq>gcacgagggaaggggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccaaattccgcagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69367" stop="72893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69665" g_stop="69819" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="237" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="270" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72593" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="357" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E200157" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69665" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATG</genome_strand>
        <mrna_strand>GCACGAGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAAATTCCGCAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287972" ref_strand="+" ref_description="SGN-E287972 [cLES-7-E6]">
      <seq>gggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttggtgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69377" stop="73447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69677" g_stop="69819" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="225" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="258" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="380" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73147" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="500" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E287972" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69677" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGA</genome_strand>
        <mrna_strand>GGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGGTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724780" ref_strand="+" ref_description="SGN-E724780 [FC25AE12]">
      <seq>aatcggccgaattgatttaattgtgtcctgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69387" stop="74074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69681" g_stop="69819" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="219" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="252" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="374" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73189" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="536" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73509" g_stop="73774" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="802" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E724780" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69681" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73189"/>
          <exon e_start="73509" e_stop="73774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATG</genome_strand>
        <mrna_strand>AATCGGCCGA-ATTG-ATTTAATTGTGTCCTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720306" ref_strand="+" ref_description="SGN-E720306 [FC10BG01]">
      <seq>tcggccgaattgatactgatattcagacctttaacttttacgattcttcgcatcagccatgggtatctggcaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacttgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttccnnnnnaanaaaannnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69433" stop="74071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69724" g_stop="69819" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="178" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="211" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="333" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73189" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="495" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73509" g_stop="73773" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="760" r_length="265" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="774" polyA_stop="807"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E720306" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69724" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73189"/>
          <exon e_start="73509" e_stop="73773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACAT</genome_strand>
        <mrna_strand>TCGGCCGAATTGATACTGATATTCAGACCTTTAACTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGCAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACTTGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTCCNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547043" ref_strand="+" ref_description="SGN-E547043 [TUS-70-L13]">
      <seq>tttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaatgatgactataactttttttttttgtagtggtgctgatttgtatgataaatttgcgaggctattggttttttctgctggtttctccagagttctcttgtactgtnaattaaagtattttgtctattgagtgagttgntacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69426" stop="74072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69726" g_stop="69819" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="176" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="209" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="331" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73189" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="493" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73509" g_stop="73778" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="758" r_length="265" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E547043" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69726" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73189"/>
          <exon e_start="73509" e_stop="73778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTT</genome_strand>
        <mrna_strand>TTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAATGATGACTATAAC---TT-TTTTTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGC-GAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTNAATTAAAGTATTTTGTCTATTGAGTGAGTTGNTACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547125" ref_strand="+" ref_description="SGN-E547125 [TUS-70-N13]">
      <seq>tttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaatgatgactataactttttttttttgtagtggtgctgatttgtatgataaatttgcgagggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctatttgagtgagttgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69426" stop="74071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69726" g_stop="69819" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="176" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="209" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="331" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73189" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="493" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73509" g_stop="73771" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="753" r_length="260" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E547125" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69726" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73189"/>
          <exon e_start="73509" e_stop="73771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTA-TTGAGTGAGTTGTTAC</genome_strand>
        <mrna_strand>TTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAATGATGACTATAAC---TT-TTTTTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGCGAGGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTTGAGTGAGTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549484" ref_strand="+" ref_description="SGN-E549484 [TUS-70-N13](-)">
      <seq>tttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaatgatgactataactttttttttttgtagtggtgctgatttgtatgataaatttgcgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69426" stop="74072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69726" g_stop="69819" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="176" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="209" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="331" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73189" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="493" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73509" g_stop="73771" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="751" r_length="258" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="752" polyA_stop="761"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E549484" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69726" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73189"/>
          <exon e_start="73509" e_stop="73771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTAC</genome_strand>
        <mrna_strand>TTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAATGATGACTATAAC---TT-TTTTTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGC-GAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363474" ref_strand="+" ref_description="SGN-E363474 [cLPP-4-D9]">
      <seq>tttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69426" stop="73456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69726" g_stop="69819" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="176" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="209" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="331" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73156" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="460" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E363474" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69726" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGA</genome_strand>
        <mrna_strand>TTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360708" ref_strand="+" ref_description="SGN-E360708 [cLPP-7-L18]">
      <seq>ttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69427" stop="73829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69727" g_stop="69819" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="175" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="208" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="330" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73189" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="492" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73509" g_stop="73529" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="513" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E360708" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69727" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73189"/>
          <exon e_start="73509" e_stop="73529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGA</genome_strand>
        <mrna_strand>TTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547042" ref_strand="+" ref_description="SGN-E547042 [TUS-70-L13](-)">
      <seq>gatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaatgatgactataactttttttttttgtagtggtgctgatttgtatgataaatttgcgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacaaaaaaaaaaaaaaaaaactcgaggggggcccggtcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69441" stop="74072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69741" g_stop="69819" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="161" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="194" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="316" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73189" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="478" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73509" g_stop="73771" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="736" r_length="258" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="737" polyA_stop="755"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E547042" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69741" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73189"/>
          <exon e_start="73509" e_stop="73771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTAC</genome_strand>
        <mrna_strand>GATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAATGATGACTATAAC---TT-TTTTTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGC-GAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E307942" ref_strand="+" ref_description="SGN-E307942 [cLEZ-7-J8]">
      <seq>gatattcaaatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69441" stop="73359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69741" g_stop="69819" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="161" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="194" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="316" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73059" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="348" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E307942" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69741" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACC</genome_strand>
        <mrna_strand>GATATTCAAATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722943" ref_strand="+" ref_description="SGN-E722943 [FC18DC09]">
      <seq>gggcgattggcggccaatcggccgaattgatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacatgttttttttcttgccatttttcgtctcaactctctctaattgtgtttgcaattcctcttatactttttacttgtctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69433" stop="74153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69750" g_stop="69819" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="113" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="195" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="228" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="350" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73189" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="512" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73509" g_stop="73853" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="857" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E722943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69750" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73189"/>
          <exon e_start="73509" e_stop="73853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTG</genome_strand>
        <mrna_strand>ATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E723448" ref_strand="+" ref_description="SGN-E723448 [FC20CA09]">
      <seq>gcggccaaatcggccgaattgatactgatattcagacctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcaaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcaaatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="69433" stop="74031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69750" g_stop="69819" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="105" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72161" g_stop="72242" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="187" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="220" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72507" g_stop="72628" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="342" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73028" g_stop="73189" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="504" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73509" g_stop="73731" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="727" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E723448" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69750" e_stop="69819"/>
          <exon e_start="72161" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72628"/>
          <exon e_start="73028" e_stop="73189"/>
          <exon e_start="73509" e_stop="73731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTA</genome_strand>
        <mrna_strand>ACCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAAAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243240" ref_strand="+" ref_description="SGN-E243240 [cLEE-2-O8]">
      <seq>cagatttggctggacattttccacctaaatccttgtagcttttgacttttctaagtttcttgcaaaaaagtgaattgtgttccatcggagtcattgttgtagacagactctttgcctgttcaatgattgaccacctcgtatcagaaaaatcaactctatatatgtggttggaacaccttttaatatttttgaatggactagacactgactgatgaaagtgaaaccattgatgcttccccttgacctttcatcatatacaaaactttttcctgaggttcaactgggtgattccagaaatgacgaccaaaaataacttatatttgacagattttacaatgtcaccatccattattcagtcttgtgtcatcccaccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="71255" stop="72231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71555" g_stop="71931" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E243240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71555" e_stop="71931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGC</genome_strand>
        <mrna_strand>CAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551117" ref_strand="+" ref_description="SGN-E551117 [TUS-55-F19]">
      <seq>tttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctctnattaaatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="71659" stop="72434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71959" g_stop="72134" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E551117" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71959" e_stop="72134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTC</genome_strand>
        <mrna_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTNATTAAATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688920" ref_strand="+" ref_description="SGN-E688920 [t3_tus_55_F19]">
      <seq>tttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctctnattaaatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="71659" stop="72434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71959" g_stop="72134" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E688920" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71959" e_stop="72134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTC</genome_strand>
        <mrna_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTNATTAAATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262466" ref_strand="+" ref_description="SGN-E262466 [cLEG-56-P17]">
      <seq>ttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcctgtcctatttggtgcttgacagatttatatttttatgccttcgataggtggaattcttgatcttgatcatttatgtgtatttaaaggaatgatgctaaatatgttgctcccttaagagttttaacaaattttaaggacctcaactgtaatttgatatacatgaattcttattttatagcctcnagctaatttggtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="71660" stop="73300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71960" g_stop="72242" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="316" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72507" g_stop="73000" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="810" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E262466" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71960" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="73000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCT</genome_strand>
        <mrna_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCNAGCTAATTTGGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263078" ref_strand="+" ref_description="SGN-E263078 [cLEG-59-P1]">
      <seq>ttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagatgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcatgaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcctgtcctatttggtgcttgacagatttatatttttatgccttcgataggtggaattcttgatcttgatcatttatgtgtatttaaaggaatgatgctaaatatgttgctcccttaagagttttaacaaattttaaggacctcgactgtaatttgatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="71660" stop="73259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71960" g_stop="72242" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="316" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72507" g_stop="72959" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="769" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E263078" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71960" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATA</genome_strand>
        <mrna_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGATGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCATGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCGACTGTAATTTGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262918" ref_strand="+" ref_description="SGN-E262918 [cLEG-59-B22]">
      <seq>ttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcctgtcctatttggtgcttgacagatttatatttttatgccttcgataggtggaattcttgatcttgatcatttatgtgtatttaaaggaatgatgctaaatatgttgnctcccttaagagttttaacaaattttaaggacctcaactgtaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="71660" stop="73254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71960" g_stop="72242" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="316" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72507" g_stop="72954" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="765" r_length="449" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E262918" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71960" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTG-CTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTG</genome_strand>
        <mrna_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGNCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258015" ref_strand="+" ref_description="SGN-E258015 [cLEG-48-J20]">
      <seq>ttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacaatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaagtcaacccaaattccgcagtatgtgggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="71660" stop="72900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71960" g_stop="72242" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="317" r_length="34" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72507" g_stop="72600" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="411" r_length="94" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E258015" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71960" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACA-TGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGC</genome_strand>
        <mrna_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACAATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAAGTCAACCCAAATTCCGCAGTATGTGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688956" ref_strand="+" ref_description="SGN-E688956 [t3_tus_55_I03]">
      <seq>taaggtctttcaattatggtgttgcgtctcattattacttcaaagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="71666" stop="73101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71966" g_stop="72242" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="310" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72507" g_stop="72801" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="605" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E688956" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71966" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCC</genome_strand>
        <mrna_strand>TAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAAAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551157" ref_strand="+" ref_description="SGN-E551157 [TUS-55-I3]">
      <seq>taaggtctttcaattatggtgttgcgtctcattattacttcaaagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="71666" stop="73086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71966" g_stop="72242" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72366" g_stop="72398" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="310" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72507" g_stop="72786" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="590" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E551157" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71966" e_stop="72242"/>
          <exon e_start="72366" e_stop="72398"/>
          <exon e_start="72507" e_stop="72786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGA</genome_strand>
        <mrna_strand>TAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAAAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278871" ref_strand="+" ref_description="SGN-E278871 [cLER-2-A1]">
      <seq>tgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="72208" stop="73856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72508" g_stop="72628" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73028" g_stop="73189" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="283" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73509" g_stop="73556" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="331" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E278871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72508" e_stop="72628"/>
          <exon e_start="73028" e_stop="73189"/>
          <exon e_start="73509" e_stop="73556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTC</genome_strand>
        <mrna_strand>TGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221803" ref_strand="+" ref_description="SGN-E221803 [cLEL-10-M21](-)">
      <seq>agatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacatgttttttttcttgccatttttcgtctcaactctctctaattgtgtttgcaattcctcttatactttttacttgtctgctgcacgagtttgtgtgaaaggaacggatctttttaagttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="73207" stop="74195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73509" g_stop="73892" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="388" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="410"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E221803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73509" e_stop="73892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTGCACGAGTTTGTGTGAAAGGAACGGATCTTTTTAAGTTTT</genome_strand>
        <mrna_strand>GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTGCACGAGTTTGTGTGAAAGGAACGGATCTTTTTAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242215" ref_strand="+" ref_description="SGN-E242215 [cLED-37-G18]">
      <seq>tccttcgaagtagttgccccatatattcaacatctaaagatttcggggcattttgataatgtggaaataagacttggggacctttcatctttagtcattgctgatcttactttctctgttgatattgtatatgacaataccgtggaacttctcttggcaagtgtacgttgtgctaatgagctaatgatcccatgctggtttatcgagatgatttatgtggcggtgatagaaaagaagaaagatgttccatttctgatgcggaagtgcaaacggttgacgataaattcttggatttcaaaaaatgccattctcggcataggtgttctcttaaagtcaactccttatctggagaatttgacgatacttcatgaagagggagatttctttgtctgggatgaatacttggaagaagaagtgtttgattggttaggagacaaatccctctccttgcatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="86967" stop="83410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86667" g_stop="86461" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="84572" i_length="1889">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84571" g_stop="84404" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="375" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84403" i_stop="83793" i_length="611">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83792" g_stop="83710" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="458" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E242215" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86667" e_stop="86461"/>
          <exon e_start="84571" e_stop="84404"/>
          <exon e_start="83792" e_stop="83710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAGGTAAGTTTTCAGCCAAAAACTCTCCAGTCTTTTTTATGCTGAATATGAATATAATACACATACATGTGTTGTGTCAGTGAGAACAATTTACAATACTTTTGAAAACCACATACCAAGAAATGTGTGTGCATTTAAAGTCAAATTATAATTAAGATAGACTAAACAAAGTCAGAATACTAAGGGGGAAAAAAAGAATGACACAGTAACAAAAAGAAAAAGATTCAATCTAGACAGCTCTGAATCTCCAGAAGAACTTAAACAATATAGAGAAAATTGAGAGCACGATGATGCAGGTGTAAAACTTGTCTCTGTAAGATGTATTGCTCTATAGTAAAACAGACGTAAAAAGGTAAAATTGAAATAAGATAGAAGGTCTACCTAATCTTGGAGTTTGATACCAAGGAAACACTTGTCTAGGCTAAAAGGCAAGTAATGGTAATACTCACTACATTAAGTAAATCATAGAGTGACTAGTTGAAGAATATTCTTTGAATAAGGAACTTTTTAGATGAGCCAAATGCACCCAAACAAATCAATAGCCAAATGGCCACTCGTTATTAGGATTGATGAGTGAGAAGGGACACTTGCATATATAGGTACTCTTTTGGTGCATTAATGAGTAATCACTCGTCGTTGGTGTCAAATCCTCTGTTGTCGCTGGCATAGGTCCCCACACTACTCGAATATCCCTGATTTGCTGTGAATGAAAAAGTAGTTCATATCCTCTATGAACCTCTCACATCATGAGCACCTACTACAGATGTTGACCCTCTTCTTTGGAGGTTCTCCTGGGTTAAACAAGCTCCTTAAGGCACCAGCCAGGTAAAGCAAAGATCTTTAAGCATCCTACTTCCAGGGGAGCTTTGCTTTTCCAAATGCATTTCATAAGCCAAAATGTGCTACTGCCAGAAGATCTCCTAGATAGACTAATATTCTTTGATCTTGAAGTTACCTACTGTGTTTCCTTTCCACAAAAGAGATTCAGGACTGGAAGATAAAGGGGGGCAGCTATGCAACTTATATAAAAGTGAGGACACGGTTAAATTCACAATCATTTTTGCTGCACCAGAGACCAAAAACGCAGTCCTGTTCAGATCACATTTCTGAAATTGTAGCATCTTGTGTTTGTGCAATACTGTAAATATATGGATACTGCATCTTCGGTGGTGTTTGGACTAGCCAAACATCCTCCCAGAACTTGTCTCCTTCACATTTCCAACTTGAAGAGGTGATGGCGAAAAAATAATTTTTGTGGACTCTAATATGCCTCCATATACCATAGGGACTGTTGCCGAACCTGGTCAGTTATCCAAGGGATCAGGCATGCATTTTTACCATAACGACACCTCCAAAGTGCCTTCTCTTCATTACTACATCCTCATAACTACTTCTGCAGTGAGCTGTTGCTCTGCATCTTCAATTTCTCTACTCTTAAGTTCTCCCTGCCTTCAAATTTGCGGTGACTGATTCCCAACTTACCAAGTGAAGGTTCTGTATTCTCTCTCTCTCTTGCAGAAGCAATTCCTATGTAGTTTGTTTGTCCAACCTTTTTGTCACTGAAAACATGCAGTGGAGCAAAGAGATAGGGTATATGGGATATTATTCTGAACTTAAAACAGTTTTTGTTGGATGTTATCATCACACAGTAGCTTTGTAACTGAATTCCTTGTTAACTATGTTTGTTTTCTAATATATTATAGAGACTATGGGGAAGTTCTGAGGCTAGAAAAAGATCAAACTAAGACCATAGAAACATTCTGTTGTCGGGTGAAGGGGTGTGAAGGGTGAAACTTTAACCCATGAGTTTGGGATGTTTTTAAGCCCTATAAAATTTGATATCGTGATACTTAATGTACTTACCTTCTACTCTGCTTCTCTCTCCCATTTAGATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAGGTATGTTTTCAACTGATTCTTGCTTTGAGATACCTTTTATATTCTTTTTCACTCTTTAATTTTTTCCCTTGTGTTTGTTTCATTATCCTTTACATTTTCAATATCACGTTTTGAGGCATAATATAGCCTTGGATATCAAGCTGTTTTATGTATAGCGCCCTTTATTACTGAAATTGTTGCCCATCAGACCTACATTTTCTAATTTCTAAATATATGCGACCATAGTGTTGCTGCACTGAAGACTCTTCTTCCTTTTACAATGAGTTATTAGCTTCTTGCTTTTGTTTGGCATAAAATATTACATTCAATCGTCTATTGATCTCCAACGACATCAATGGGAAGTCTTCAACATTTTTAGTACTTTCCACTAAATTACTATCAGTGGTCTATCTCAATGTAATTATACACCTTCTGACTAAAAAGTACTTTCATCTGTTTGTCTAATGTTTGACTACTATGTTGCTTATATGTCCGTCTCAGATTCTCTTCTGTGTGTTGTTCTGCAATTTCAGTACCATAAAATTCCATTCTAAAATCCATACATTTACTCAAGTATGTTCCACCTGTTACACTTACACTTAACCTGATTTGTGGTTCTTCTGTATCCGTAGGGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCATGAAAA</genome_strand>
        <mrna_strand>TCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210769" ref_strand="+" ref_description="SGN-E210769 [cLEC-68-E4]">
      <seq>tcaaagcccctatgtcttgccacaagttctctgcaacaactcatccattgtaaaatttaattgcgagttttgcagaataccagaagaatgtgtactaaactggacatccctgaagagtttgacactaacctatttgtttcttcgggacgaacatgttgaacaaatagtaacaaattgtcctcagttggaattgttgaagctatgtgagttttgtggttttcatcgcttacatataacttctccaaaatgtaggagtctgcaattgattgatcatgcccatcctgatggagattggggtccatttggcggtgattgttccttcgaagtagttgccccatatattcaacatctaaagatttcggggcattttgataatgtggaaataagacttggggacctttcatctttagtcattgctgatcttactttctctgttgatattgtatatgacaataccgtggaacttctcttggcaagtgtacgttgtgctaatgagctaatgatcccatgctggtttatcgagatgatttatgtggcggtgatagaaaagaagaaagatgttccatttctgatgcggaagtgcaaacggttgacgataaattcttggatttcaaaaaatgccattctcggcataggtgttctcttaaagtcaactccttatctggagaatttgacgatacttcatgaagagggagatttctttgtctgggatgaatacttggaagaaagagtgtttgattggttangagacnaatccctctccttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="87283" stop="83416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86983" g_stop="86461" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86460" i_stop="84572" i_length="1889">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84571" g_stop="84404" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="691" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84403" i_stop="83793" i_length="611">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83792" g_stop="83716" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="768" r_length="77" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E210769" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86983" e_stop="86461"/>
          <exon e_start="84571" e_stop="84404"/>
          <exon e_start="83792" e_stop="83716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAGGTAAGTTTTCAGCCAAAAACTCTCCAGTCTTTTTTATGCTGAATATGAATATAATACACATACATGTGTTGTGTCAGTGAGAACAATTTACAATACTTTTGAAAACCACATACCAAGAAATGTGTGTGCATTTAAAGTCAAATTATAATTAAGATAGACTAAACAAAGTCAGAATACTAAGGGGGAAAAAAAGAATGACACAGTAACAAAAAGAAAAAGATTCAATCTAGACAGCTCTGAATCTCCAGAAGAACTTAAACAATATAGAGAAAATTGAGAGCACGATGATGCAGGTGTAAAACTTGTCTCTGTAAGATGTATTGCTCTATAGTAAAACAGACGTAAAAAGGTAAAATTGAAATAAGATAGAAGGTCTACCTAATCTTGGAGTTTGATACCAAGGAAACACTTGTCTAGGCTAAAAGGCAAGTAATGGTAATACTCACTACATTAAGTAAATCATAGAGTGACTAGTTGAAGAATATTCTTTGAATAAGGAACTTTTTAGATGAGCCAAATGCACCCAAACAAATCAATAGCCAAATGGCCACTCGTTATTAGGATTGATGAGTGAGAAGGGACACTTGCATATATAGGTACTCTTTTGGTGCATTAATGAGTAATCACTCGTCGTTGGTGTCAAATCCTCTGTTGTCGCTGGCATAGGTCCCCACACTACTCGAATATCCCTGATTTGCTGTGAATGAAAAAGTAGTTCATATCCTCTATGAACCTCTCACATCATGAGCACCTACTACAGATGTTGACCCTCTTCTTTGGAGGTTCTCCTGGGTTAAACAAGCTCCTTAAGGCACCAGCCAGGTAAAGCAAAGATCTTTAAGCATCCTACTTCCAGGGGAGCTTTGCTTTTCCAAATGCATTTCATAAGCCAAAATGTGCTACTGCCAGAAGATCTCCTAGATAGACTAATATTCTTTGATCTTGAAGTTACCTACTGTGTTTCCTTTCCACAAAAGAGATTCAGGACTGGAAGATAAAGGGGGGCAGCTATGCAACTTATATAAAAGTGAGGACACGGTTAAATTCACAATCATTTTTGCTGCACCAGAGACCAAAAACGCAGTCCTGTTCAGATCACATTTCTGAAATTGTAGCATCTTGTGTTTGTGCAATACTGTAAATATATGGATACTGCATCTTCGGTGGTGTTTGGACTAGCCAAACATCCTCCCAGAACTTGTCTCCTTCACATTTCCAACTTGAAGAGGTGATGGCGAAAAAATAATTTTTGTGGACTCTAATATGCCTCCATATACCATAGGGACTGTTGCCGAACCTGGTCAGTTATCCAAGGGATCAGGCATGCATTTTTACCATAACGACACCTCCAAAGTGCCTTCTCTTCATTACTACATCCTCATAACTACTTCTGCAGTGAGCTGTTGCTCTGCATCTTCAATTTCTCTACTCTTAAGTTCTCCCTGCCTTCAAATTTGCGGTGACTGATTCCCAACTTACCAAGTGAAGGTTCTGTATTCTCTCTCTCTCTTGCAGAAGCAATTCCTATGTAGTTTGTTTGTCCAACCTTTTTGTCACTGAAAACATGCAGTGGAGCAAAGAGATAGGGTATATGGGATATTATTCTGAACTTAAAACAGTTTTTGTTGGATGTTATCATCACACAGTAGCTTTGTAACTGAATTCCTTGTTAACTATGTTTGTTTTCTAATATATTATAGAGACTATGGGGAAGTTCTGAGGCTAGAAAAAGATCAAACTAAGACCATAGAAACATTCTGTTGTCGGGTGAAGGGGTGTGAAGGGTGAAACTTTAACCCATGAGTTTGGGATGTTTTTAAGCCCTATAAAATTTGATATCGTGATACTTAATGTACTTACCTTCTACTCTGCTTCTCTCTCCCATTTAGATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAGGTATGTTTTCAACTGATTCTTGCTTTGAGATACCTTTTATATTCTTTTTCACTCTTTAATTTTTTCCCTTGTGTTTGTTTCATTATCCTTTACATTTTCAATATCACGTTTTGAGGCATAATATAGCCTTGGATATCAAGCTGTTTTATGTATAGCGCCCTTTATTACTGAAATTGTTGCCCATCAGACCTACATTTTCTAATTTCTAAATATATGCGACCATAGTGTTGCTGCACTGAAGACTCTTCTTCCTTTTACAATGAGTTATTAGCTTCTTGCTTTTGTTTGGCATAAAATATTACATTCAATCGTCTATTGATCTCCAACGACATCAATGGGAAGTCTTCAACATTTTTAGTACTTTCCACTAAATTACTATCAGTGGTCTATCTCAATGTAATTATACACCTTCTGACTAAAAAGTACTTTCATCTGTTTGTCTAATGTTTGACTACTATGTTGCTTATATGTCCGTCTCAGATTCTCTTCTGTGTGTTGTTCTGCAATTTCAGTACCATAAAATTCCATTCTAAAATCCATACATTTACTCAAGTATGTTCCACCTGTTACACTTACACTTAACCTGATTTGTGGTTCTTCTGTATCCGTAGGGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCA</genome_strand>
        <mrna_strand>TCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAAGAGTGTTTGATTGGTTANGAGACNAATCCCTCTCCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E206193" ref_strand="+" ref_description="SGN-E206193 [cLEC-29-K21]">
      <seq>taaaggccagattcttgaaaacccacctcaggaaaaagtgaacattgagacagaaagtgaagaaactggcattgattggatcagcgagctacctgacgctctaattgtacaaattctctctctattgcccatacaagatgctttcagaacatctgttctctctaaacgttggcaatacccctggacttctatagacaaccttatttttgacaaccgaaataccaattggtccaatagagagaatgtgattaataagttcatttccttcacagacaatgtactacctctcctttgctgctctaatattaaaaagttctgtctatatttccgattttgccttgttgcttcttatagttccaaaattgacaagtggcttgaaattgttttgaagaaaaaagtggaggatcttgacctggaaatatggtattatgatcaaagcccctatgtcttgccacaagttctctgcaacaactcatccattgtaaaatttaattgcgagttttgcagaataccagaagaatgtgtactaaactggacatccctgaagagtttgacactaacctatttgtttcttcgggacgaacatgttgaacaaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="87715" stop="86516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87415" g_stop="86816" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E206193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87415" e_stop="86816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTTGTTGCTTCTTATAGTTCCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGT</genome_strand>
        <mrna_strand>TAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTTGTTGCTTCTTATAGTTCCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256706" ref_strand="+" ref_description="SGN-E256706 [cLEG-40-N17]">
      <seq>aggggtgcgtttggcggcaactatataaaacaatttggggaggctcagttatcatcacgagtaaatcttgggttctagggtttcaaatttgatcattcaccattgtcgacgaaacacgatggtttaacttctgttgagaggcgatttatttgttcttcctggtacagcagtggctaagcatatagaggtctctcattcttgcaatgaactcggaaaggaaatgtagtgtgacaaccatgggcgaccaagaccaatctcctagcagttctggtgatgatggacattctaaaggccagattcttgaaaacccacctcacgaaaaagtgaacattgagacagaaagtgaagaaactggcattgattggatcagcgagctacctgacgctctaattgtacaaattctctctctattgcccatacaagatgctttcacaacatctgttctctctaaacgttggcaatacccctggacttctatagacaaccttatttttgacaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="88531" stop="86900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88231" g_stop="88071" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88070" i_stop="87541" i_length="530">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87540" g_stop="87200" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="502" r_length="341" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E256706" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88231" e_stop="88071"/>
          <exon e_start="87540" e_stop="87200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGTGCGTTTGGCGGCAACTATATAAAACAATTTGGGGAGGCTCAATTATCATCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTGGTACGACTCCCTTCATTTTTTACCCATATAATTTTAGGCTTCTGCTACTTTTATGTTTGAGTTAACTTGACATCAATTCAGTATTCCATAGAGAAGAAAAATAGAATGGGTTAGTTAGATGTTACTGATAAACTTAAAAAGAGCTCGAATTTTAATTTAAGAGTATAGAGTAGTTGATTTGTAAAATTCAGATGCGAACTTAGTATTTCTAGAACATGACGCACCACTAAAAAAAATAAATAAAAAAATGTATTAATTGGTAATTGATTGATTCCTAGTGCTCTAGGTAATTAATTCAACATTCAATCAAGTGAACTGGGCTTCATGTGCCCCTTTTAAGGCTATAAATTTGCCACTGGTCAAACCAACGTAGATAGAGAAATGATAAATGGTCGGAGTAGGTACATGAGTAGTTTAGTATATAGGTCTCTCATTCTTGTAGGGAGCATTTTTCCAGAGCAGGAATCAAGGAGTATCAGACTTTTGGTTAAGATCAAAATTTATTAATATTTGCTCGTTTCTCCGCGCAGGTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCG</genome_strand>
        <mrna_strand>AGGGGTGCGTTTGGCGGCAACTATATAAAACAATTTGGGGAGGCTCAGTTATCATCACGAGTAAATCTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGCAGTGGCTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCACGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCACAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338737" ref_strand="+" ref_description="SGN-E338737 [cTOE-21-C4]">
      <seq>tcacgagtaaattttgggttctagggtttcaaatttgatcattcaccattgtcgacgaaacacgatggtttaacttctgttgagaggcgatttatttgttcttcctggtacagcagtggttaagcatatagaggtctctcattcttgcaatgaactcggaaaggaaatgtagtgtgacaaccatgggcgaccaagaccaatctcctagcagttctggtgatgatggacattctaaaggccagattcttgaaaacccacctcaggaaaaagtgaacattgagacagaaagtgaagaaactggcattgattggatcagcgagctacctgacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="-" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="88477" stop="87017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88177" g_stop="88071" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88070" i_stop="87541" i_length="530">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87540" g_stop="87317" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="331" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="-" ref_id="SGN-E338737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88177" e_stop="88071"/>
          <exon e_start="87540" e_stop="87317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTGGTACGACTCCCTTCATTTTTTACCCATATAATTTTAGGCTTCTGCTACTTTTATGTTTGAGTTAACTTGACATCAATTCAGTATTCCATAGAGAAGAAAAATAGAATGGGTTAGTTAGATGTTACTGATAAACTTAAAAAGAGCTCGAATTTTAATTTAAGAGTATAGAGTAGTTGATTTGTAAAATTCAGATGCGAACTTAGTATTTCTAGAACATGACGCACCACTAAAAAAAATAAATAAAAAAATGTATTAATTGGTAATTGATTGATTCCTAGTGCTCTAGGTAATTAATTCAACATTCAATCAAGTGAACTGGGCTTCATGTGCCCCTTTTAAGGCTATAAATTTGCCACTGGTCAAACCAACGTAGATAGAGAAATGATAAATGGTCGGAGTAGGTACATGAGTAGTTTAGTATATAGGTCTCTCATTCTTGTAGGGAGCATTTTTCCAGAGCAGGAATCAAGGAGTATCAGACTTTTGGTTAAGATCAAAATTTATTAATATTTGCTCGTTTCTCCGCGCAGGTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGC</genome_strand>
        <mrna_strand>TCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716820" ref_strand="+" ref_description="SGN-E716820 [FB18AE05]">
      <seq>gcaaagtaatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90402" stop="95583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90702" g_stop="90919" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="307" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="437" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="467" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95283" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="734" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E716820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90702" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGT</genome_strand>
        <mrna_strand>GCAAAGTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715560" ref_strand="+" ref_description="SGN-E715560 [FB14CE12]">
      <seq>gtaatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagccttgtttttctctccaaaagaaattagcgtgtcaaaatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90407" stop="95658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90707" g_stop="90919" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="302" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="432" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="462" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95358" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="804" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E715560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90707" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTA</genome_strand>
        <mrna_strand>GTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267318" ref_strand="+" ref_description="SGN-E267318 [cLEI-17-K1]">
      <seq>taatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90408" stop="94049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90708" g_stop="90919" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="301" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="431" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E267318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90708" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG</genome_strand>
        <mrna_strand>TAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311130" ref_strand="+" ref_description="SGN-E311130 [cLEZ-16-F15]">
      <seq>aatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctggtttctttttttttttaccttctctaaagttgggcagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90409" stop="95482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90709" g_stop="90919" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="300" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="430" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="460" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95182" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="626" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E311130" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90709" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCT</genome_strand>
        <mrna_strand>AATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGGTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311430" ref_strand="+" ref_description="SGN-E311430 [cLEZ-18-O13]">
      <seq>aatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90409" stop="94850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90709" g_stop="90919" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="300" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="430" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="460" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E311430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90709" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAG</genome_strand>
        <mrna_strand>AATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E719644" ref_strand="+" ref_description="SGN-E719644 [FC08BH04]">
      <seq>atcggccgaattgacttcggccggattccattaactcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcaaatctccttcttgaaggatttaataaatcaaacttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90423" stop="95519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90712" g_stop="90919" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="297" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="427" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="457" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95226" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="667" r_length="210" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="705"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E719644" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90712" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAA</genome_strand>
        <mrna_strand>ATCGGCCGAATTGACTTCGGCCGGATTCCATTAACTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAAATCTCCTTCTTGAAGGATTTAATAAATCAAACTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268072" ref_strand="+" ref_description="SGN-E268072 [cLEI-15-H22]">
      <seq>ctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90414" stop="95453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90714" g_stop="90919" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="295" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="425" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="455" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95153" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="592" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E268072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90714" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTT</genome_strand>
        <mrna_strand>CTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724927" ref_strand="+" ref_description="SGN-E724927 [FC25CC03]">
      <seq>gacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcaaatctccttcttgaaggatttaataaatcaaacttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90425" stop="95519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90724" g_stop="90919" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="285" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="415" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="445" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95226" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="655" r_length="210" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="677"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E724927" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90724" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAA</genome_strand>
        <mrna_strand>GACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAAATCTCCTTCTTGAAGGATTTAATAAATCAAACTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725113" ref_strand="+" ref_description="SGN-E725113 [FC26AD11]">
      <seq>gggcgattggcggcaaatcggccgaattacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90422" stop="95581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90727" g_stop="90919" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="223" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="312" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="472" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95281" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="737" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E725113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90727" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTT</genome_strand>
        <mrna_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722903" ref_strand="+" ref_description="SGN-E722903 [FC18CG11]">
      <seq>cggccgattcccatggggatccgatgacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttaccttctctaaagttgggcaaatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90412" stop="95531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90727" g_stop="90919" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="221" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="310" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="440" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="470" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95232" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="685" r_length="215" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E722903" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90727" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACAT</genome_strand>
        <mrna_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTACCTTCTCTAAAGTTGGGCAAATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302025" ref_strand="+" ref_description="SGN-E302025 [cLEX-3-K8]">
      <seq>ttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90427" stop="95344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90727" g_stop="90919" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="282" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="412" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="442" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95044" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="470" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E302025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90727" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGT</genome_strand>
        <mrna_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338077" ref_strand="+" ref_description="SGN-E338077 [cTOE-14-P8]">
      <seq>cggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90433" stop="95393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90733" g_stop="90919" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="276" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="406" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="436" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95093" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="513" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E338077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90733" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTC</genome_strand>
        <mrna_strand>CGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329934" ref_strand="+" ref_description="SGN-E329934 [cTOD-5-A14]">
      <seq>ttctatcatctcaggcaaatggctagctctctccgacgactagcgacgcgttcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90437" stop="95466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90737" g_stop="90919" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="272" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="402" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="432" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95166" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="582" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E329934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90737" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCT</genome_strand>
        <mrna_strand>TTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCGTTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302372" ref_strand="+" ref_description="SGN-E302372 [cLEW-27-M2]">
      <seq>ttctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90437" stop="95460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90737" g_stop="90919" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="272" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="402" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="432" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95160" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="576" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E302372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90737" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACC</genome_strand>
        <mrna_strand>TTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319821" ref_strand="+" ref_description="SGN-E319821 [cTOB-12-P23]">
      <seq>tctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90438" stop="95465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90738" g_stop="90919" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="271" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="401" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="431" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95165" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="580" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E319821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90738" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTC</genome_strand>
        <mrna_strand>TCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342065" ref_strand="+" ref_description="SGN-E342065 [cTOF-10-P9]">
      <seq>tatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90440" stop="95557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90740" g_stop="90919" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="269" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="399" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="429" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95257" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="670" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E342065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90740" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAG</genome_strand>
        <mrna_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345740" ref_strand="+" ref_description="SGN-E345740 [cTOF-18-L10]">
      <seq>tatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90440" stop="95545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90740" g_stop="90919" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="269" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="399" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="429" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95245" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="660" r_length="231" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E345740" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90740" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC--TTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAA</genome_strand>
        <mrna_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342064" ref_strand="+" ref_description="SGN-E342064 [cTOF-10-P7]">
      <seq>tatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataatcaaacttatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90440" stop="95519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90740" g_stop="90919" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="269" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="399" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="429" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95219" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="631" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E342064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90740" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAA</genome_strand>
        <mrna_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAAT-AATCAAACTTATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713914" ref_strand="+" ref_description="SGN-E713914 [FB10AA10]">
      <seq>atcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90441" stop="95519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90741" g_stop="90919" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="268" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="398" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="428" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95226" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="638" r_length="210" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E713914" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90741" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAA</genome_strand>
        <mrna_strand>ATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348692" ref_strand="+" ref_description="SGN-E348692 [cTOF-30-D14]">
      <seq>tcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctcttaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaaatgtcttaaaacctttgtgaagcaatncccgggtgttttctgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90442" stop="95578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90742" g_stop="90919" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="427" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95273" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="685" r_length="258" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E348692" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90742" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGC-AATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTT</genome_strand>
        <mrna_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTTAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAAATGTCTTAAAACCTTTGTGAAGCAATNCCCGGGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333951" ref_strand="+" ref_description="SGN-E333951 [cTOD-24-L1]">
      <seq>tcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaaacctttgtgaagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90442" stop="95560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90742" g_stop="90919" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="427" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95259" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="670" r_length="243" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E333951" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90742" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTT-AAAACCTTTGTGAAGCA</genome_strand>
        <mrna_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAAACCTTTGTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303864" ref_strand="+" ref_description="SGN-E303864 [cLEX-4-G5]">
      <seq>tcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90442" stop="95519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90742" g_stop="90919" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="427" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95225" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="636" r_length="209" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E303864" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90742" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACA</genome_strand>
        <mrna_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341612" ref_strand="+" ref_description="SGN-E341612 [cTOE-23-M21]">
      <seq>tcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggaccttccaaggcaggagaataatttattttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90442" stop="95384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90742" g_stop="90919" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="427" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95084" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="495" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E341612" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90742" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTA</genome_strand>
        <mrna_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTTCCAAGGCAGGAGAATAATTTATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E278691" ref_strand="+" ref_description="SGN-E278691 [cLER-10-L16]">
      <seq>catctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90443" stop="95387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90743" g_stop="90919" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="266" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="396" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="426" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95087" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="497" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E278691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90743" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTT</genome_strand>
        <mrna_strand>CATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E360837" ref_strand="+" ref_description="SGN-E360837 [cLPP-7-D20]">
      <seq>atctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgatatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctccggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcactcagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggaaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90444" stop="95340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90744" g_stop="90919" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="265" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="395" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="425" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95040" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="449" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E360837" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90744" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTT</genome_strand>
        <mrna_strand>ATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGATATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCCGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTCAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGAAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304012" ref_strand="+" ref_description="SGN-E304012 [cLEX-6-E3]">
      <seq>tctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90445" stop="95518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90745" g_stop="90919" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="264" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="394" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="424" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95218" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="626" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E304012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90745" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAA</genome_strand>
        <mrna_strand>TCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716246" ref_strand="+" ref_description="SGN-E716246 [FB16CA12]">
      <seq>ctcaggcaaatggctatctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagccttgtttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90446" stop="95628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90746" g_stop="90919" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="263" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="393" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="423" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95328" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="735" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E716246" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90746" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCT</genome_strand>
        <mrna_strand>CTCAGGCAAATGGCTATCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308823" ref_strand="+" ref_description="SGN-E308823 [cLEZ-14-J7]">
      <seq>tcaggcaaatggctagctctctgcgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90447" stop="95455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90747" g_stop="90919" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="262" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="392" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="422" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95155" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="561" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E308823" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90747" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTT</genome_strand>
        <mrna_strand>TCAGGCAAATGGCTAGCTCTCTGCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337306" ref_strand="+" ref_description="SGN-E337306 [cTOE-7-H20]">
      <seq>tcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90447" stop="95344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90747" g_stop="90919" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="262" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="392" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="422" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95044" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="450" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E337306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90747" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGT</genome_strand>
        <mrna_strand>TCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713012" ref_strand="+" ref_description="SGN-E713012 [FB06BH08]">
      <seq>caggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagccnaaaaaaaaaaaaaaaaaaaaaaaaaaatctccggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90448" stop="95558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90748" g_stop="90919" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="261" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="391" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="421" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95256" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="661" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="693"/>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E713012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90748" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAA</genome_strand>
        <mrna_strand>CAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340764" ref_strand="+" ref_description="SGN-E340764 [cTOF-5-A6]">
      <seq>aggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaagatttataaatcaaacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90449" stop="95515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90749" g_stop="90919" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="260" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="390" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="420" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95215" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="618" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E340764" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90749" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG</genome_strand>
        <mrna_strand>AGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAAGATTT-ATAAATCAAACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332709" ref_strand="+" ref_description="SGN-E332709 [cTOD-18-K19]">
      <seq>gcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaaagcatttccggggtgttctgtacttgtgggacattgtgtcgtgtcaaaacctagtagccttgttttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90451" stop="95627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90751" g_stop="90919" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="258" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="388" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="418" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95327" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="727" r_length="309" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E332709" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90751" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTC</genome_strand>
        <mrna_strand>GCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAAGCATTTCCGGGGTGTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAAC-CTAGTAGCCTTG-TTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341866" ref_strand="+" ref_description="SGN-E341866 [cTOF-9-F22]">
      <seq>ctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagaatttccgggtgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90459" stop="95575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90759" g_stop="90919" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="250" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="380" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="410" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95275" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="668" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E341866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90759" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCT</genome_strand>
        <mrna_strand>CTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAG-AATTTCCGGGTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273406" ref_strand="+" ref_description="SGN-E273406 [cLEN-3-P8]">
      <seq>tagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90460" stop="95549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90760" g_stop="90919" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="249" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="379" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="409" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95249" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="643" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E273406" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90760" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCT</genome_strand>
        <mrna_strand>TAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344296" ref_strand="+" ref_description="SGN-E344296 [cTOF-16-G10]">
      <seq>cgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggcgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcatacttatgaaaatccacaagtacatgcaatgtcttataacctttgtgaagcaatttccaggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagcccttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90470" stop="95623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90770" g_stop="90919" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="239" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="369" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="399" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95323" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="706" r_length="307" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E344296" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90770" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAG-CCTTGTTTT</genome_strand>
        <mrna_strand>CGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCATACTTATGAAAATCCACAAGTACATGCAATGTCTTATAACCTTTGTGAAGCAATTTCCAGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCCTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344180" ref_strand="+" ref_description="SGN-E344180 [cTOF-16-F9]">
      <seq>cgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttaccttctctaaagttgggcagatctncttcttgaaggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="90470" stop="95498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90770" g_stop="90919" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91827" g_stop="91915" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="239" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="369" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="399" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95017" g_stop="95198" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="580" r_length="181" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E344180" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90770" e_stop="90919"/>
          <exon e_start="91827" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTT</genome_strand>
        <mrna_strand>CGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTNCTTCTTGAAGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285980" ref_strand="+" ref_description="SGN-E285980 [cLES-13-N19]">
      <seq>gaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="91573" stop="95561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91873" g_stop="91915" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="173" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="203" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95017" g_stop="95261" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="448" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E285980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91873" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAAT</genome_strand>
        <mrna_strand>GAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304150" ref_strand="+" ref_description="SGN-E304150 [cLEX-6-E3](-)">
      <seq>aaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagccttgtttttctctccaaaagaaattagcgtgtcaaaatacttacgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLe0132D01-qNEQ0/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLe0132D01.1" temp_strand="+" temp_description="C02SLe0132D01.1  AC215468.2 htgs_phase:3 submitted_to_sgn_as:C02SLe0132D01 sequenced_by:kribb upload_account_name:korea">
        <position start="91590" stop="95662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91890" g_stop="91915" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93608" g_stop="93737" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="156" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94507" g_stop="94536" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="186" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95017" g_stop="95372" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="542" r_length="356" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLe0132D01.1" gen_strand="+" ref_id="SGN-E304150" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLe0132D01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91890" e_stop="91915"/>
          <exon e_start="93608" e_stop="93737"/>
          <exon e_start="94507" e_stop="94536"/>
          <exon e_start="95017" e_stop="95372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTACGAACTGTGATTGT</genome_strand>
        <mrna_strand>AAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTACGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>167</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1211" PGL_stop="5004"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1211" e_stop="1352"/>
            <exon e_start="1487" e_stop="1554"/>
            <exon e_start="3701" e_stop="3811"/>
            <exon e_start="3903" e_stop="3989"/>
            <exon e_start="4088" e_stop="4296"/>
            <exon e_start="4405" e_stop="5004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.789" e_score="0.992"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="1211" e_stop="1352" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.789">
            <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1487" e_stop="1554" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1555" i_stop="3700" i_length="2146"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3701" e_stop="3811" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3903" e_stop="3989" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="4088" e_stop="4296" e_length="209"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4405" e_stop="5004" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1211" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1228" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1233" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1261" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1267" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1268" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1269" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1270" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1270" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1270" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1270" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1271" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1274" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1276" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1277" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1278" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1278" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1278" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1278" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1278" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1284" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1285" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1292" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1299" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1300" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1503" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1525" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358369" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1529" stop="1554"/>
              <exon start="3701" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3794" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3794" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3805" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3905" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3922" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3971" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="5004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4405" stop="4968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297899" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAATATTTATTTATTTGGCTCCCTTCGCTACGCCAATTTCTCTCTCTCTCTCTGTTGTTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG : ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCCTTACATCAACTGCAGTGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG : CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTA</gDNA_template>
            <first_frame> P  N  I  Y  L  F  G  S  L  R  Y  A  N  F  S  L  S  L  C  C  F  Y  E  T  S  I  P  L  P  E  K  M  S  K  G  P  G  L  F  S  D  I  G  K  K  A  R   : D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  L  T  S  T  A  V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  I  A  S  L  K  F  P  D  Y  S  S  G  K  :  L  E  V  Q  Y  Y  H  H  H  A  A  F  S  T  A  V  G  L  K  Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D  K  G  D  T  I  K  A  S  Y  I  H  H  L  D  E  L  K  K  S  A  A  V  G  E  I  T  R  R  F  S  T  N  E  N  T  F  T  V  G  G  S  Y  A  V  D  N  L  T  I  V  K  L  K  L  N  N  H  G  N  L  G  A  L  L  Q  H  E  L  I  P  K  S  L  L  T  I  S  S  E  F  D  T  K  A  L  E  K  T  P  K  F  G  V  A  L  A  L  K  P  *  T  A  F  L  D  V  N  N  *  H  F  L  G  L  V  P  G  G  E  V  F  N  K  *  F  D  K  L  V  V  F  S  P  L  N  L  Y  G  F  *  M  S  C  S  D  S  R  A  S  L  W  Y  F  S  S  F  P  R  L  L  H  F  P  S  E  K  D  Q  V  F  D  V  F  P  L  E  E  L  F  L  L  I  W  C  N  R  *  L  H  Q  L  R  *  F  H  F  N   </first_frame>
            <second_frame>  P  I  F  I  Y  L  A  P  F  A  T  P  I  S  L  S  L  S  V  V  F  T  K  L  P  F  L  C  Q  R  K  *  A  R  D  L  D  F  S  L  I  L  A  R  K  P  E  :  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  L  H  Q  L  Q  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P  L  P  H  *  N  S  L  T  T  V  L  G  S :   *  R  F  S  T  I  T  I  M  L  H  L  V  Q  L  L  V  *  N  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V  T  K  G  T  Q  *  K  H  H  I  Y  I  I  *  M  N  *  R  R  V  Q  L  W  A  R  S  L  D  G  S  P  Q  M  R  T  P  S  Q  L  E  G  H  M  L  L  I  T  *  Q  L  *  S  S  S  S  I  I  T  V  T  W  G  L  Y  C  S  M  S  *  F  R  S  H  C  *  L  F  L  V  S  L  T  P  R  P  W  K  R  L  P  N  L  V  W  P  L  L  *  S  R  E  L  H  F  W  M  *  T  T  N  I  F  W  G  *  C  L  E  E  R  C  S  I  S  S  S  I  N  L  W  F  F  P  P  S  I  Y  M  V  S  E  *  V  A  L  I  L  G  P  L  Y  G  I  S  L  V  F  P  V  F  Y  I  S  P  R  R  K  T  K  C  L  M  C  S  L  W  K  S  F  F  F  *  Y  G  A  I  G  N  F  T  S  C  V  N  F  I  L  I  </second_frame>
            <third_frame>   Q  Y  L  F  I  W  L  P  S  L  R  Q  F  L  S  L  S  L  L  F  L  R  N  F  H  S  S  A  R  E  N  E  Q  G  T  W  T  F  L  *  Y  W  Q  E  S  Q  R :   C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  P  Y  I  N  C  S  E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N  H  C  L  T  E  I  P  *  L  Q  F  W  E   : A  R  G  S  V  L  S  P  S  C  C  I  *  Y  S  C  W  S  E  T  K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  Q  R  G  H  N  K  S  I  I  Y  T  S  S  R  *  I  E  E  E  C  S  C  G  R  D  H  S  T  V  L  H  K  *  E  H  L  H  S  W  R  V  I  C  C  *  *  P  D  N  C  E  A  Q  A  Q  *  S  R  *  P  G  G  S  T  A  A  *  A  D  S  E  V  I  V  D  Y  F  *  *  V  *  H  Q  G  L  G  K  D  S  Q  I  W  C  G  P  C  S  E  A  V  N  C  I  F  G  C  E  Q  L  T  F  F  G  V  S  A  W  R  R  G  V  Q  *  V  V  R  *  T  C  G  F  F  P  P  Q  F  I  W  F  L  N  E  L  L  *  F  *  G  L  F  M  V  F  L  *  F  S  P  S  S  T  F  P  L  G  E  R  P  S  V  *  C  V  P  S  G  R  A  F  S  F  D  M  V  Q  *  V  T  S  P  V  A  L  I  S  F  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1211" stop="1352"/>
                    <exon start="1487" stop="1554"/>
                    <exon start="3701" stop="3811"/>
                    <exon start="3903" stop="3989"/>
                    <exon start="4088" stop="4296"/>
                    <exon start="4405" stop="4711"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNIYLFGSLRYANFSLSLCCFYETSIPLPEKMSKGPGLFSDIGKKARDVLTKDYISDQKLSISTYSDTGVALTSTAVKKGGLSTGDVGAQYKYKNTLIDVKVDTASNISTTLTLNDIAPSTKTIASLKFPDYSSGKLEVQYYHHHAAFSTAVGLKQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGDTIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGALLQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1270" e_stop="1352"/>
            <exon e_start="1487" e_stop="1554"/>
            <exon e_start="3532" e_stop="3570"/>
            <exon e_start="3720" e_stop="3811"/>
            <exon e_start="3903" e_stop="3989"/>
            <exon e_start="4088" e_stop="4296"/>
            <exon e_start="4405" e_stop="5004"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.789" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.242" e_score="1.000"/>
          <exon-intron don_prob="0.307" acc_prob="0.720" e_score="0.436"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="0.967"/>
          <exon-intron don_prob="0.985" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1270" e_stop="1352" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.789">
            <gDNA_intron_boundary i_start="1353" i_stop="1486" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1487" e_stop="1554" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.242">
            <gDNA_intron_boundary i_start="1555" i_stop="3531" i_length="1977"/>
          </intron>
          <exon e_serial="3" e_score="0.436">
            <gDNA_exon_boundary e_start="3532" e_stop="3570" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.307" acc_prob="0.720">
            <gDNA_intron_boundary i_start="3571" i_stop="3719" i_length="149"/>
          </intron>
          <exon e_serial="4" e_score="0.967">
            <gDNA_exon_boundary e_start="3720" e_stop="3811" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3812" i_stop="3902" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3903" e_stop="3989" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.993">
            <gDNA_intron_boundary i_start="3990" i_stop="4087" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4088" e_stop="4296" e_length="209"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4297" i_stop="4404" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4405" e_stop="5004" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1270" stop="1352"/>
              <exon start="1487" stop="1554"/>
              <exon start="3532" stop="3570"/>
              <exon start="3720" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3794" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3794" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3805" stop="3811"/>
              <exon start="3903" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3905" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3922" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="4745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3971" stop="3989"/>
              <exon start="4088" stop="4296"/>
              <exon start="4405" stop="5004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4405" stop="4968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297899" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTACGAAACTTCCATTCCTCTGCCAGAGAAAATGAGCAAGGGACCTGGACTTTTCTCTGATATTGGCAAGAAAGCCAGAG : ATGTTTTGACTAAGGACTATATTTCCGATCAGAAACTATCTATTTCAACCTACAGTGACACTGGAGTG : GCCATATGGCTGGCTTGAATCTTTTCCCAAAAGTATATG : TGAAGAAGGGAGGGCTTTCAACTGGAGATGTTGGAGCACAATACAAATATAAGAATACTTTAATTGATGTCAAAGTTGATACAGCGTCAAAC : ATTTCAACCACTCTTACTCTAAATGACATTGCCCCTTCAACGAAAACCATTGCCTCACTGAAATTCCCTGACTACAGTTCTGGGAAG : CTAGAGGTTCAGTACTATCACCATCATGCTGCATTTAGTACAGCTGTTGGTCTGAAACAAAACCCTATAGTTGATCTCTCTGTCACGCTTGGTACTCCCACTTTCGCCATCGGTGCAGAGGCAAGTTACGAGACAGCCGAAGGTAAACTTGCAAAATATACCGCTGGCATTAGTGTGACAAAACCAGATTCTTGTGCTGCTATAATACT : GGGTGACAAAGGGGACACAATAAAAGCATCATATATACATCATCTAGATGAATTGAAGAAGAGTGCAGCTGTGGGCGAGATCACTCGACGGTTCTCCACAAATGAGAACACCTTCACAGTTGGAGGGTCATATGCTGTTGATAACCTGACAATTGTGAAGCTCAAGCTCAATAATCACGGTAACCTGGGGGCTCTACTGCAGCATGAGCTGATTCCGAAGTCATTGTTGACTATTTCTAGTGAGTTTGACACCAAGGCCTTGGAAAAGACTCCCAAATTTGGTGTGGCCCTTGCTCTGAAGCCGTGAACTGCATTTTTGGATGTGAACAACTAACATTTTTTGGGGTTAGTGCCTGGAGGAGAGGTGTTCAATAAGTAGTTCGATAAACTTGTGGTTTTTTCCCCCCTCAATTTATATGGTTTCTGAATGAGTTGCTCTGATTCTAGGGCCTCTTTATGGTATTTCTCTAGTTTTCCCCGTCTTCTACATTTCCCCTCGGAGAAAGACCAAGTGTTTGATGTGTTCCCTCTGGAAGAGCTTTTTCTTTTGATATGGTGCAATAGGTAACTTCACCAGTTGCGTTAATTTCATTTTAATTA</gDNA_template>
            <first_frame> F  L  R  N  F  H  S  S  A  R  E  N  E  Q  G  T  W  T  F  L  *  Y  W  Q  E  S  Q  R :   C  F  D  *  G  L  Y  F  R  S  E  T  I  Y  F  N  L  Q  *  H  W  S   : G  H  M  A  G  L  N  L  F  P  K  V  Y   : V  K  K  G  G  L  S  T  G  D  V  G  A  Q  Y  K  Y  K  N  T  L  I  D  V  K  V  D  T  A  S  N  :  I  S  T  T  L  T  L  N  D  I  A  P  S  T  K  T  I  A  S  L  K  F  P  D  Y  S  S  G  K  :  L  E  V  Q  Y  Y  H  H  H  A  A  F  S  T  A  V  G  L  K  Q  N  P  I  V  D  L  S  V  T  L  G  T  P  T  F  A  I  G  A  E  A  S  Y  E  T  A  E  G  K  L  A  K  Y  T  A  G  I  S  V  T  K  P  D  S  C  A  A  I  I  L :   G  D  K  G  D  T  I  K  A  S  Y  I  H  H  L  D  E  L  K  K  S  A  A  V  G  E  I  T  R  R  F  S  T  N  E  N  T  F  T  V  G  G  S  Y  A  V  D  N  L  T  I  V  K  L  K  L  N  N  H  G  N  L  G  A  L  L  Q  H  E  L  I  P  K  S  L  L  T  I  S  S  E  F  D  T  K  A  L  E  K  T  P  K  F  G  V  A  L  A  L  K  P  *  T  A  F  L  D  V  N  N  *  H  F  L  G  L  V  P  G  G  E  V  F  N  K  *  F  D  K  L  V  V  F  S  P  L  N  L  Y  G  F  *  M  S  C  S  D  S  R  A  S  L  W  Y  F  S  S  F  P  R  L  L  H  F  P  S  E  K  D  Q  V  F  D  V  F  P  L  E  E  L  F  L  L  I  W  C  N  R  *  L  H  Q  L  R  *  F  H  F  N   </first_frame>
            <second_frame>  F  Y  E  T  S  I  P  L  P  E  K  M  S  K  G  P  G  L  F  S  D  I  G  K  K  A  R   : D  V  L  T  K  D  Y  I  S  D  Q  K  L  S  I  S  T  Y  S  D  T  G  V  :  A  I  W  L  A  *  I  F  S  Q  K  Y  M  :  *  R  R  E  G  F  Q  L  E  M  L  E  H  N  T  N  I  R  I  L  *  L  M  S  K  L  I  Q  R  Q  T :   F  Q  P  L  L  L  *  M  T  L  P  L  Q  R  K  P  L  P  H  *  N  S  L  T  T  V  L  G  S :   *  R  F  S  T  I  T  I  M  L  H  L  V  Q  L  L  V  *  N  K  T  L  *  L  I  S  L  S  R  L  V  L  P  L  S  P  S  V  Q  R  Q  V  T  R  Q  P  K  V  N  L  Q  N  I  P  L  A  L  V  *  Q  N  Q  I  L  V  L  L  *  Y   : W  V  T  K  G  T  Q  *  K  H  H  I  Y  I  I  *  M  N  *  R  R  V  Q  L  W  A  R  S  L  D  G  S  P  Q  M  R  T  P  S  Q  L  E  G  H  M  L  L  I  T  *  Q  L  *  S  S  S  S  I  I  T  V  T  W  G  L  Y  C  S  M  S  *  F  R  S  H  C  *  L  F  L  V  S  L  T  P  R  P  W  K  R  L  P  N  L  V  W  P  L  L  *  S  R  E  L  H  F  W  M  *  T  T  N  I  F  W  G  *  C  L  E  E  R  C  S  I  S  S  S  I  N  L  W  F  F  P  P  S  I  Y  M  V  S  E  *  V  A  L  I  L  G  P  L  Y  G  I  S  L  V  F  P  V  F  Y  I  S  P  R  R  K  T  K  C  L  M  C  S  L  W  K  S  F  F  F  *  Y  G  A  I  G  N  F  T  S  C  V  N  F  I  L  I  </second_frame>
            <third_frame>   F  T  K  L  P  F  L  C  Q  R  K  *  A  R  D  L  D  F  S  L  I  L  A  R  K  P  E  :  M  F  *  L  R  T  I  F  P  I  R  N  Y  L  F  Q  P  T  V  T  L  E  W :   P  Y  G  W  L  E  S  F  P  K  S  I  C :   E  E  G  R  A  F  N  W  R  C  W  S  T  I  Q  I  *  E  Y  F  N  *  C  Q  S  *  Y  S  V  K   : H  F  N  H  S  Y  S  K  *  H  C  P  F  N  E  N  H  C  L  T  E  I  P  *  L  Q  F  W  E   : A  R  G  S  V  L  S  P  S  C  C  I  *  Y  S  C  W  S  E  T  K  P  Y  S  *  S  L  C  H  A  W  Y  S  H  F  R  H  R  C  R  G  K  L  R  D  S  R  R  *  T  C  K  I  Y  R  W  H  *  C  D  K  T  R  F  L  C  C  Y  N  T  :  G  *  Q  R  G  H  N  K  S  I  I  Y  T  S  S  R  *  I  E  E  E  C  S  C  G  R  D  H  S  T  V  L  H  K  *  E  H  L  H  S  W  R  V  I  C  C  *  *  P  D  N  C  E  A  Q  A  Q  *  S  R  *  P  G  G  S  T  A  A  *  A  D  S  E  V  I  V  D  Y  F  *  *  V  *  H  Q  G  L  G  K  D  S  Q  I  W  C  G  P  C  S  E  A  V  N  C  I  F  G  C  E  Q  L  T  F  F  G  V  S  A  W  R  R  G  V  Q  *  V  V  R  *  T  C  G  F  F  P  P  Q  F  I  W  F  L  N  E  L  L  *  F  *  G  L  F  M  V  F  L  *  F  S  P  S  S  T  F  P  L  G  E  R  P  S  V  *  C  V  P  S  G  R  A  F  S  F  D  M  V  Q  *  V  T  S  P  V  A  L  I  S  F  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1545" stop="1554"/>
                    <exon start="3532" stop="3570"/>
                    <exon start="3720" stop="3811"/>
                    <exon start="3903" stop="3989"/>
                    <exon start="4088" stop="4296"/>
                    <exon start="4405" stop="4711"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HWSGHMAGLNLFPKVYVKKGGLSTGDVGAQYKYKNTLIDVKVDTASNISTTLTLNDIAPSTKTIASLKFPDYSSGKLEVQYYHHHAAFSTAVGLKQNPIVDLSVTLGTPTFAIGAEASYETAEGKLAKYTAGISVTKPDSCAAIILGDKGDTIKASYIHHLDELKKSAAVGEITRRFSTNENTFTVGGSYAVDNLTIVKLKLNNHGNLGALLQHELIPKSLLTISSEFDTKALEKTPKFGVALALKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="7365" PGL_stop="6695"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7365" e_stop="6695"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="7365" e_stop="6695" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7365" stop="6726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7355" stop="6720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7351" stop="6707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7349" stop="6758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7346" stop="6797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7342" stop="6717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7339" stop="6708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7338" stop="6717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7338" stop="6778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7337" stop="6709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7337" stop="6722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7335" stop="6758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7335" stop="6802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7334" stop="6873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7333" stop="6709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7333" stop="6709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7333" stop="6710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7333" stop="6710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7333" stop="6710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7333" stop="6873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7333" stop="6873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7332" stop="6695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7331" stop="6718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7329" stop="6778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7327" stop="6722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7327" stop="6818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7293" stop="6710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7220" stop="6758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350195" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7204" stop="6722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7173" stop="6722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7144" stop="6760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7098" stop="6722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7031" stop="6758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTCTCAGTCATCTCTACCGGCCACATTTGCAGAGAGGGAGCGTTGGGAGAGAAATCGTCGAAGATGAAGTACAATCCAAGAGTATCCTCCTCCCGCCGCAAGAGCAGGAAGGCACATTTCACGGCGCCTTCCAGCCTTCGCCGGGTGTTGATGAGCGCCCCTTTGTCCTCAGAGTTGCGAGCCAAGTACAGCGTTAGGTCCATGCCAGTAAGGAAAGACGACGAGGTTCAGGTGGTTCGTGGAACCTACAAGGGTCGTGAAGGAAAAGTTGTCCAAGTCTACCGTAAGAAGTGGGTGATCCACATTGAGCGCATTACCAGAGAGAAGGTTAATGGATCCACTGTTAACGTTGGTATTCACCCATCCAAGGTTGTTATCTCCAAGCTCAGGCTCGACAAGGACCGTAGGTCTCTTCTTGACCGTAAGGCTAAGGGTCGTGCTGCTGCCGATAAGGATAAGGGTACTAAGTTCACCACCGAGGAAATCATGCAGGCAATTGATTAGTTCTTCTTCTATCTATTTTGTTTCTGTTTTGTTATATCTTATTGCTTTTGCTACTTTGAAGCTTGTTGGAATAGCTAAAGAGTATTTTTCTGAGACTCTGAATTTTGTTTCAGTATTTTAATAGTATGCAATTTTGGGTATAATCAGTTGTGATTCTCGTTAAA</gDNA_template>
            <first_frame> L  L  S  V  I  S  T  G  H  I  C  R  E  G  A  L  G  E  K  S  S  K  M  K  Y  N  P  R  V  S  S  S  R  R  K  S  R  K  A  H  F  T  A  P  S  S  L  R  R  V  L  M  S  A  P  L  S  S  E  L  R  A  K  Y  S  V  R  S  M  P  V  R  K  D  D  E  V  Q  V  V  R  G  T  Y  K  G  R  E  G  K  V  V  Q  V  Y  R  K  K  W  V  I  H  I  E  R  I  T  R  E  K  V  N  G  S  T  V  N  V  G  I  H  P  S  K  V  V  I  S  K  L  R  L  D  K  D  R  R  S  L  L  D  R  K  A  K  G  R  A  A  A  D  K  D  K  G  T  K  F  T  T  E  E  I  M  Q  A  I  D  *  F  F  F  Y  L  F  C  F  C  F  V  I  S  Y  C  F  C  Y  F  E  A  C  W  N  S  *  R  V  F  F  *  D  S  E  F  C  F  S  I  L  I  V  C  N  F  G  Y  N  Q  L  *  F  S  L   </first_frame>
            <second_frame>  Y  S  Q  S  S  L  P  A  T  F  A  E  R  E  R  W  E  R  N  R  R  R  *  S  T  I  Q  E  Y  P  P  P  A  A  R  A  G  R  H  I  S  R  R  L  P  A  F  A  G  C  *  *  A  P  L  C  P  Q  S  C  E  P  S  T  A  L  G  P  C  Q  *  G  K  T  T  R  F  R  W  F  V  E  P  T  R  V  V  K  E  K  L  S  K  S  T  V  R  S  G  *  S  T  L  S  A  L  P  E  R  R  L  M  D  P  L  L  T  L  V  F  T  H  P  R  L  L  S  P  S  S  G  S  T  R  T  V  G  L  F  L  T  V  R  L  R  V  V  L  L  P  I  R  I  R  V  L  S  S  P  P  R  K  S  C  R  Q  L  I  S  S  S  S  I  Y  F  V  S  V  L  L  Y  L  I  A  F  A  T  L  K  L  V  G  I  A  K  E  Y  F  S  E  T  L  N  F  V  S  V  F  *  *  Y  A  I  L  G  I  I  S  C  D  S  R  *  </second_frame>
            <third_frame>   T  L  S  H  L  Y  R  P  H  L  Q  R  G  S  V  G  R  E  I  V  E  D  E  V  Q  S  K  S  I  L  L  P  P  Q  E  Q  E  G  T  F  H  G  A  F  Q  P  S  P  G  V  D  E  R  P  F  V  L  R  V  A  S  Q  V  Q  R  *  V  H  A  S  K  E  R  R  R  G  S  G  G  S  W  N  L  Q  G  S  *  R  K  S  C  P  S  L  P  *  E  V  G  D  P  H  *  A  H  Y  Q  R  E  G  *  W  I  H  C  *  R  W  Y  S  P  I  Q  G  C  Y  L  Q  A  Q  A  R  Q  G  P  *  V  S  S  *  P  *  G  *  G  S  C  C  C  R  *  G  *  G  Y  *  V  H  H  R  G  N  H  A  G  N  *  L  V  L  L  L  S  I  L  F  L  F  C  Y  I  L  L  L  L  L  L  *  S  L  L  E  *  L  K  S  I  F  L  R  L  *  I  L  F  Q  Y  F  N  S  M  Q  F  W  V  *  S  V  V  I  L  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7365" stop="6859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSVISTGHICREGALGEKSSKMKYNPRVSSSRRKSRKAHFTAPSSLRRVLMSAPLSSELRAKYSVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGIHPSKVVISKLRLDKDRRSLLDRKAKGRAAADKDKGTKFTTEEIMQAID*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="6873" PGL_stop="7340"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6873" e_stop="7340"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="6873" e_stop="7340" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6873" stop="7340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216704" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATGATTTCCTCGGTGGTGAACTTAGTACCCTTATCCTTATCGGCAGCAGCACGACCCTTAGCCTTACGGTCAAGAAGAGACCTACGGTCCTTGTCGAGCCTGAGCTTGGAGATAACAACCTTGGATGGGTGAATACCAACGTTAACAGTGGATCCATTAACCTTCTCTCTGGTAATGCGCTCAATGTGGATCACCCACTTCTTACGGTAGACTTGGACAACTTTTCCTTCACGACCCTTGTAGGTTCCACGAACCACCTGAACCTCGTCGTCTTTCCTTACTGGCATGGACCTAACGCTGTACTTGGCTCGCAACTCTGAGGACAAAGGGGCGCTCATCAACACCCGGCGAAGGCTGGAAGGCGCCGTGAAATGTGCCTTCCTGCTCTTGCGGCGGGAGGAGGATACTCTTGGATTGTACTTCATCTTCGACGATTTCTCTCCCAACGCTCCCTCTCTGCAAATGT</gDNA_template>
            <first_frame> A  *  F  P  R  W  *  T  *  Y  P  Y  P  Y  R  Q  Q  H  D  P  *  P  Y  G  Q  E  E  T  Y  G  P  C  R  A  *  A  W  R  *  Q  P  W  M  G  E  Y  Q  R  *  Q  W  I  H  *  P  S  L  W  *  C  A  Q  C  G  S  P  T  S  Y  G  R  L  G  Q  L  F  L  H  D  P  C  R  F  H  E  P  P  E  P  R  R  L  S  L  L  A  W  T  *  R  C  T  W  L  A  T  L  R  T  K  G  R  S  S  T  P  G  E  G  W  K  A  P  *  N  V  P  S  C  S  C  G  G  R  R  I  L  L  D  C  T  S  S  S  T  I  S  L  P  T  L  P  L  C  K  C </first_frame>
            <second_frame>  H  D  F  L  G  G  E  L  S  T  L  I  L  I  G  S  S  T  T  L  S  L  T  V  K  K  R  P  T  V  L  V  E  P  E  L  G  D  N  N  L  G  W  V  N  T  N  V  N  S  G  S  I  N  L  L  S  G  N  A  L  N  V  D  H  P  L  L  T  V  D  L  D  N  F  S  F  T  T  L  V  G  S  T  N  H  L  N  L  V  V  F  P  Y  W  H  G  P  N  A  V  L  G  S  Q  L  *  G  Q  R  G  A  H  Q  H  P  A  K  A  G  R  R  R  E  M  C  L  P  A  L  A  A  G  G  G  Y  S  W  I  V  L  H  L  R  R  F  L  S  Q  R  S  L  S  A  N   </second_frame>
            <third_frame>   M  I  S  S  V  V  N  L  V  P  L  S  L  S  A  A  A  R  P  L  A  L  R  S  R  R  D  L  R  S  L  S  S  L  S  L  E  I  T  T  L  D  G  *  I  P  T  L  T  V  D  P  L  T  F  S  L  V  M  R  S  M  W  I  T  H  F  L  R  *  T  W  T  T  F  P  S  R  P  L  *  V  P  R  T  T  *  T  S  S  S  F  L  T  G  M  D  L  T  L  Y  L  A  R  N  S  E  D  K  G  A  L  I  N  T  R  R  R  L  E  G  A  V  K  C  A  F  L  L  L  R  R  E  E  D  T  L  G  L  Y  F  I  F  D  D  F  S  P  N  A  P  S  L  Q  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6874" stop="7194"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HDFLGGELSTLILIGSSTTLSLTVKKRPTVLVEPELGDNNLGWVNTNVNSGSINLLSGNALNVDHPLLTVDLDNFSFTTLVGSTNHLNLVVFPYWHGPNAVLGSQL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="12014" PGL_stop="14917"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13619" e_stop="13916"/>
            <exon e_start="14082" e_stop="14917"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13619" e_stop="13916" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13917" i_stop="14081" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14082" e_stop="14917" e_length="836"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13619" stop="13916"/>
              <exon start="14082" stop="14523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13619" stop="13916"/>
              <exon start="14082" stop="14504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13620" stop="13916"/>
              <exon start="14082" stop="14311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14180" stop="14871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14277" stop="14917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550275" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTAATTGCCGTTAATCGTGAATATGCATCGATCGTGCTGCGTTCTTGTGTTTCTCTGCTCCCGGAGTGTGAAACAACATCGTCACTGTTGAGTAGATGTGTTGAAGCATTAAGTTTGGTAGACAATGGTGACAGCATTATGAAGTGCCTCAGCGAAGTTAAAGAGTTGCTGCCAGTGGAATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG : GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCGATTGTAGCATCCTTTCGCCACAACTTCTCATGCATGCGGTCCAAAACGCCAGAATGCCATTAAGGTTTGTGGTCCAAGCCATGTTCATTGAGCAATTGAGCACCCGCCGCTCTATCCTCACGACCACTGCTGCTGACAACCACAATCATCACATTGATGTTCTCCACAGCAAAAACGATGTTAGTTTGGGTGCAATTCTCGAACGAGACGCAGCACTTCGTCAAGTTTCACAGCTTAAGGCAGCTATGAACGCCACAAGCTCGCGAATCCAGAGTTTAGAGCAAGAGTTGAGTGGCATGAAAAAGCTTCTTAACGAATCAGATCAAAACGCGAAGAATGATTTGTCGCATAACTCCGCTCGCTCTGCTAGTTTTCGATTGAGTTCTGAGAATAAGATCGATAGAGGGCAAATTGGATCAGTTTCATCCGCAAGCTTTCGGATACTTACAGCTAGAGATAGAGCGGTAATGGGTTCGTCTAATTCATCAGAAGTATCTTACGAGGAAAATACAAAAGTGGAAAAGATTAATTTTAGTCGAAGGTTTATGAATGGATTGAAGAACGCATTCCGAGTGCCAAAGAAGAAAACAGAGACAAAGGTGGAAAATGTAAAAGAGGCCGAAAATGGTAAACAACAACATGGAGAAGTTGTGGTGATAGAGAAGGATGTGCCTTTTCGCAGGCAGCCTCGTTCTCTAGATTAAAAAAAATGAAGTACTTTGTTTGCACAATCTTTTTAGATTCATGTGTTACTTCAGCTTTTGTTGAATTTCTCTTCTCT</gDNA_template>
            <first_frame> L  G  S  E  N  G  S  I  F  P  R  C  N  C  R  *  S  *  I  C  I  D  R  A  A  F  L  C  F  S  A  P  G  V  *  N  N  I  V  T  V  E  *  M  C  *  S  I  K  F  G  R  Q  W  *  Q  H  Y  E  V  P  Q  R  S  *  R  V  A  A  S  G  I  S  V  N  R  E  V  H  E  S  V  V  E  R  K  P  *  S  A  L  *  S  C  *  P  L  S  *   : G  I  Q  R  E  D  N  R  *  R  K  S  H  N  V  Q  L  H  R  L  *  H  P  F  A  T  T  S  H  A  C  G  P  K  R  Q  N  A  I  K  V  C  G  P  S  H  V  H  *  A  I  E  H  P  P  L  Y  P  H  D  H  C  C  *  Q  P  Q  S  S  H  *  C  S  P  Q  Q  K  R  C  *  F  G  C  N  S  R  T  R  R  S  T  S  S  S  F  T  A  *  G  S  Y  E  R  H  K  L  A  N  P  E  F  R  A  R  V  E  W  H  E  K  A  S  *  R  I  R  S  K  R  E  E  *  F  V  A  *  L  R  S  L  C  *  F  S  I  E  F  *  E  *  D  R  *  R  A  N  W  I  S  F  I  R  K  L  S  D  T  Y  S  *  R  *  S  G  N  G  F  V  *  F  I  R  S  I  L  R  G  K  Y  K  S  G  K  D  *  F  *  S  K  V  Y  E  W  I  E  E  R  I  P  S  A  K  E  E  N  R  D  K  G  G  K  C  K  R  G  R  K  W  *  T  T  T  W  R  S  C  G  D  R  E  G  C  A  F  S  Q  A  A  S  F  S  R  L  K  K  M  K  Y  F  V  C  T  I  F  L  D  S  C  V  T  S  A  F  V  E  F  L  F  S </first_frame>
            <second_frame>  L  A  Q  K  T  E  A  Y  F  R  G  V  I  A  V  N  R  E  Y  A  S  I  V  L  R  S  C  V  S  L  L  P  E  C  E  T  T  S  S  L  L  S  R  C  V  E  A  L  S  L  V  D  N  G  D  S  I  M  K  C  L  S  E  V  K  E  L  L  P  V  E  F  Q  L  I  V  K  S  M  N  R  W  L  S  G  S  H  D  Q  L  Y  R  V  V  D  L  Y  L  K  :  E  Y  K  G  K  I  T  D  E  E  K  V  I  M  C  N  Y  I  D  C  S  I  L  S  P  Q  L  L  M  H  A  V  Q  N  A  R  M  P  L  R  F  V  V  Q  A  M  F  I  E  Q  L  S  T  R  R  S  I  L  T  T  T  A  A  D  N  H  N  H  H  I  D  V  L  H  S  K  N  D  V  S  L  G  A  I  L  E  R  D  A  A  L  R  Q  V  S  Q  L  K  A  A  M  N  A  T  S  S  R  I  Q  S  L  E  Q  E  L  S  G  M  K  K  L  L  N  E  S  D  Q  N  A  K  N  D  L  S  H  N  S  A  R  S  A  S  F  R  L  S  S  E  N  K  I  D  R  G  Q  I  G  S  V  S  S  A  S  F  R  I  L  T  A  R  D  R  A  V  M  G  S  S  N  S  S  E  V  S  Y  E  E  N  T  K  V  E  K  I  N  F  S  R  R  F  M  N  G  L  K  N  A  F  R  V  P  K  K  K  T  E  T  K  V  E  N  V  K  E  A  E  N  G  K  Q  Q  H  G  E  V  V  V  I  E  K  D  V  P  F  R  R  Q  P  R  S  L  D  *  K  K  *  S  T  L  F  A  Q  S  F  *  I  H  V  L  L  Q  L  L  L  N  F  S  S   </second_frame>
            <third_frame>   W  L  R  K  R  K  H  I  S  A  V  *  L  P  L  I  V  N  M  H  R  S  C  C  V  L  V  F  L  C  S  R  S  V  K  Q  H  R  H  C  *  V  D  V  L  K  H  *  V  W  *  T  M  V  T  A  L  *  S  A  S  A  K  L  K  S  C  C  Q  W  N  F  S  *  S  *  S  P  *  I  G  G  *  A  E  A  M  I  S  S  I  E  L  L  T  F  I  L  R :   N  T  K  G  R  *  Q  M  K  K  K  S  *  C  A  I  T  S  I  V  A  S  F  R  H  N  F  S  C  M  R  S  K  T  P  E  C  H  *  G  L  W  S  K  P  C  S  L  S  N  *  A  P  A  A  L  S  S  R  P  L  L  L  T  T  T  I  I  T  L  M  F  S  T  A  K  T  M  L  V  W  V  Q  F  S  N  E  T  Q  H  F  V  K  F  H  S  L  R  Q  L  *  T  P  Q  A  R  E  S  R  V  *  S  K  S  *  V  A  *  K  S  F  L  T  N  Q  I  K  T  R  R  M  I  C  R  I  T  P  L  A  L  L  V  F  D  *  V  L  R  I  R  S  I  E  G  K  L  D  Q  F  H  P  Q  A  F  G  Y  L  Q  L  E  I  E  R  *  W  V  R  L  I  H  Q  K  Y  L  T  R  K  I  Q  K  W  K  R  L  I  L  V  E  G  L  *  M  D  *  R  T  H  S  E  C  Q  R  R  K  Q  R  Q  R  W  K  M  *  K  R  P  K  M  V  N  N  N  M  E  K  L  W  *  *  R  R  M  C  L  F  A  G  S  L  V  L  *  I  K  K  N  E  V  L  C  L  H  N  L  F  R  F  M  C  Y  F  S  F  C  *  I  S  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13620" stop="13916"/>
                    <exon start="14082" stop="14840"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAQKTEAYFRGVIAVNREYASIVLRSCVSLLPECETTSSLLSRCVEALSLVDNGDSIMKCLSEVKELLPVEFQLIVKSMNRWLSGSHDQLYRVVDLYLKEYKGKITDEEKVIMCNYIDCSILSPQLLMHAVQNARMPLRFVVQAMFIEQLSTRRSILTTTAADNHNHHIDVLHSKNDVSLGAILERDAALRQVSQLKAAMNATSSRIQSLEQELSGMKKLLNESDQNAKNDLSHNSARSASFRLSSENKIDRGQIGSVSSASFRILTARDRAVMGSSNSSEVSYEENTKVEKINFSRRFMNGLKNAFRVPKKKTETKVENVKEAENGKQQHGEVVVIEKDVPFRRQPRSLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12014" e_stop="12348"/>
            <exon e_start="12505" e_stop="12574"/>
            <exon e_start="13395" e_stop="13655"/>
            <exon e_start="13832" e_stop="13916"/>
            <exon e_start="14082" e_stop="14136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.988"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="12014" e_stop="12348" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="12349" i_stop="12504" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12505" e_stop="12574" e_length="70"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="12575" i_stop="13394" i_length="820"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="13395" e_stop="13655" e_length="261"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13656" i_stop="13831" i_length="176"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="13832" e_stop="13916" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13917" i_stop="14081" i_length="165"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="14082" e_stop="14136" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12014" stop="12348"/>
              <exon start="12505" stop="12574"/>
              <exon start="13395" stop="13461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12165" stop="12348"/>
              <exon start="12505" stop="12574"/>
              <exon start="13395" stop="13655"/>
              <exon start="13832" stop="13916"/>
              <exon start="14082" stop="14136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAATCATTTATTACCTTACCTGCAAATAATTAATGCCCCTCAACTACATTATTACCAGCGGAGGAATAATTCTCTATTTCCTTGGTTTCTCCACTAGTAACTCAGCCTCCTAAAATCATAAACGTAACGTTTTCAGCGGAAGCAGTAGCAATACTGGGCTGTAAGGTGAAAATTGAAGGGGTTGGCCATGGAAACCATCAGAAATTGGGCAGATTTAGGGATTGTGGATACGATTTATGAAGACGATGCCGAAGATTCCTCTACTACTTCTCTTTCGATCTCTCCAAGAATCTCCCCATCTCCTTCACCTCCTCGCTCTAAGATCGTCTCCTG : GTCGCAAGTCACTGGAAATGAGACTGATGTAGTCATACATGTTGAGAGCTCACGTTTTCGCTTACACAAG : GATCCGTTGGCAGCAAGGAGTGGATTTCTGAAAAGAAAGCTGAAGGGTCTGTCTGAATTAACCCTCTCTCCGCCGTTAAAGATAACGGCCGAAACATTCTCTTTGATCGCAGAGTTTTGTTATGACTCGCACATCGTCGTTACGCCGTTTAACGTCGCTGCACTAAATACGGCGGCGGAATTGCTAGAGATGACGGAGGCTAATAACATTGCTGGTGGCGAAAACTTGGCTCAGAAAACGGAAGCATATTTCCGCGGTGTA : ATTTCAGTTAATCGTGAAGTCCATGAATCGGTGGTTGAGCGGAAGCCATGATCAGCTCTATAGAGTTGTTGACCTTTATCTTAAG : GAATACAAAGGGAAGATAACAGATGAAGAAAAAGTCATAATGTGCAATTACATCG</gDNA_template>
            <first_frame> K  N  H  L  L  P  Y  L  Q  I  I  N  A  P  Q  L  H  Y  Y  Q  R  R  N  N  S  L  F  P  W  F  L  H  *  *  L  S  L  L  K  S  *  T  *  R  F  Q  R  K  Q  *  Q  Y  W  A  V  R  *  K  L  K  G  L  A  M  E  T  I  R  N  W  A  D  L  G  I  V  D  T  I  Y  E  D  D  A  E  D  S  S  T  T  S  L  S  I  S  P  R  I  S  P  S  P  S  P  P  R  S  K  I  V  S  W :   S  Q  V  T  G  N  E  T  D  V  V  I  H  V  E  S  S  R  F  R  L  H  K  :  D  P  L  A  A  R  S  G  F  L  K  R  K  L  K  G  L  S  E  L  T  L  S  P  P  L  K  I  T  A  E  T  F  S  L  I  A  E  F  C  Y  D  S  H  I  V  V  T  P  F  N  V  A  A  L  N  T  A  A  E  L  L  E  M  T  E  A  N  N  I  A  G  G  E  N  L  A  Q  K  T  E  A  Y  F  R  G  V  :  I  S  V  N  R  E  V  H  E  S  V  V  E  R  K  P  *  S  A  L  *  S  C  *  P  L  S  *   : G  I  Q  R  E  D  N  R  *  R  K  S  H  N  V  Q  L  H   </first_frame>
            <second_frame>  R  I  I  Y  Y  L  T  C  K  *  L  M  P  L  N  Y  I  I  T  S  G  G  I  I  L  Y  F  L  G  F  S  T  S  N  S  A  S  *  N  H  K  R  N  V  F  S  G  S  S  S  N  T  G  L  *  G  E  N  *  R  G  W  P  W  K  P  S  E  I  G  Q  I  *  G  L  W  I  R  F  M  K  T  M  P  K  I  P  L  L  L  L  F  R  S  L  Q  E  S  P  H  L  L  H  L  L  A  L  R  S  S  P   : G  R  K  S  L  E  M  R  L  M  *  S  Y  M  L  R  A  H  V  F  A  Y  T  R :   I  R  W  Q  Q  G  V  D  F  *  K  E  S  *  R  V  C  L  N  *  P  S  L  R  R  *  R  *  R  P  K  H  S  L  *  S  Q  S  F  V  M  T  R  T  S  S  L  R  R  L  T  S  L  H  *  I  R  R  R  N  C  *  R  *  R  R  L  I  T  L  L  V  A  K  T  W  L  R  K  R  K  H  I  S  A  V  * :   F  Q  L  I  V  K  S  M  N  R  W  L  S  G  S  H  D  Q  L  Y  R  V  V  D  L  Y  L  K  :  E  Y  K  G  K  I  T  D  E  E  K  V  I  M  C  N  Y  I  </second_frame>
            <third_frame>   E  S  F  I  T  L  P  A  N  N  *  C  P  S  T  T  L  L  P  A  E  E  *  F  S  I  S  L  V  S  P  L  V  T  Q  P  P  K  I  I  N  V  T  F  S  A  E  A  V  A  I  L  G  C  K  V  K  I  E  G  V  G  H  G  N  H  Q  K  L  G  R  F  R  D  C  G  Y  D  L  *  R  R  C  R  R  F  L  Y  Y  F  S  F  D  L  S  K  N  L  P  I  S  F  T  S  S  L  *  D  R  L  L  :  V  A  S  H  W  K  *  D  *  C  S  H  T  C  *  E  L  T  F  S  L  T  Q   : G  S  V  G  S  K  E  W  I  S  E  K  K  A  E  G  S  V  *  I  N  P  L  S  A  V  K  D  N  G  R  N  I  L  F  D  R  R  V  L  L  *  L  A  H  R  R  Y  A  V  *  R  R  C  T  K  Y  G  G  G  I  A  R  D  D  G  G  *  *  H  C  W  W  R  K  L  G  S  E  N  G  S  I  F  P  R  C   : N  F  S  *  S  *  S  P  *  I  G  G  *  A  E  A  M  I  S  S  I  E  L  L  T  F  I  L  R :   N  T  K  G  R  *  Q  M  K  K  K  S  *  C  A  I  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12185" stop="12348"/>
                    <exon start="12505" stop="12574"/>
                    <exon start="13395" stop="13655"/>
                    <exon start="13832" stop="13882"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKGLAMETIRNWADLGIVDTIYEDDAEDSSTTSLSISPRISPSPSPPRSKIVSWSQVTGNETDVVIHVESSRFRLHKDPLAARSGFLKRKLKGLSELTLSPPLKITAETFSLIAEFCYDSHIVVTPFNVAALNTAAELLEMTEANNIAGGENLAQKTEAYFRGVISVNREVHESVVERKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="22097" PGL_stop="24685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22097" e_stop="22521"/>
            <exon e_start="23133" e_stop="23273"/>
            <exon e_start="24565" e_stop="24685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.691" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22097" e_stop="22521" e_length="425"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.691">
            <gDNA_intron_boundary i_start="22522" i_stop="23132" i_length="611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23133" e_stop="23273" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23274" i_stop="24564" i_length="1291"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24565" e_stop="24685" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22097" stop="22521"/>
              <exon start="23133" stop="23273"/>
              <exon start="24565" stop="24685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTGATCACAATATCCCACCAAAGCTCAGCCTCGTTCCTAATTTCATTCGTCCTCCCTAGCTTCGGAGTAGTACATTTTTTCCCTTCAATATACAATCAATCGATCAGGATTCAAGATTGTTCCAGTTCAGATGCTTGATGATGACTGTCGTCGGAAACAATGCCTTGATTTGTCGTCCTCAGTTGGCATCTTGCTGTGCGTCGATGAAGTTAGGGATTTTGAAGCTACAGGCGTGTAATTGCAAAGCTAAATCACTGGGCTTCAACATTACCGGTACCGAGGTGAAAACCACCTTCTTAGCGCCGGTAAGGAAAACGGAGACTTCTAGAATCGTTCATATCAACGGAAAATCCGCAAGTTCTCATCAGCCAGGATACAATTCAAACGATGAAATCAGTGCAAACGATTTTTCTGGCTTTCCTG : GTAAAAGTATATCCCTGACTTCTACAAACGGGAATTCAACAAACATTGTTTGGCACAAATGCTCTGTAGAGAAAAGTGACAGACAGGAGTTGCTTCAGCAAAGGGGCTGTGTTATATGGATAACTGGTCTCAGTGGTTCAG : GGAAGAGCACTGTGGCATGTGCTCTAGGTCGCTGTTTACATGCTAGAGGAAAACTCAGTTACATCCTTGATGGTGATAATGTTCGCCATGGTCTAAATCGTGACCTCAGTTTTGCAGCTGA</gDNA_template>
            <first_frame> L  *  S  Q  Y  P  T  K  A  Q  P  R  S  *  F  H  S  S  S  L  A  S  E  *  Y  I  F  S  L  Q  Y  T  I  N  R  S  G  F  K  I  V  P  V  Q  M  L  D  D  D  C  R  R  K  Q  C  L  D  L  S  S  S  V  G  I  L  L  C  V  D  E  V  R  D  F  E  A  T  G  V  *  L  Q  S  *  I  T  G  L  Q  H  Y  R  Y  R  G  E  N  H  L  L  S  A  G  K  E  N  G  D  F  *  N  R  S  Y  Q  R  K  I  R  K  F  S  S  A  R  I  Q  F  K  R  *  N  Q  C  K  R  F  F  W  L  S  W :   *  K  Y  I  P  D  F  Y  K  R  E  F  N  K  H  C  L  A  Q  M  L  C  R  E  K  *  Q  T  G  V  A  S  A  K  G  L  C  Y  M  D  N  W  S  Q  W  F  R :   E  E  H  C  G  M  C  S  R  S  L  F  T  C  *  R  K  T  Q  L  H  P  *  W  *  *  C  S  P  W  S  K  S  *  P  Q  F  C  S  * </first_frame>
            <second_frame>  C  D  H  N  I  P  P  K  L  S  L  V  P  N  F  I  R  P  P  *  L  R  S  S  T  F  F  P  F  N  I  Q  S  I  D  Q  D  S  R  L  F  Q  F  R  C  L  M  M  T  V  V  G  N  N  A  L  I  C  R  P  Q  L  A  S  C  C  A  S  M  K  L  G  I  L  K  L  Q  A  C  N  C  K  A  K  S  L  G  F  N  I  T  G  T  E  V  K  T  T  F  L  A  P  V  R  K  T  E  T  S  R  I  V  H  I  N  G  K  S  A  S  S  H  Q  P  G  Y  N  S  N  D  E  I  S  A  N  D  F  S  G  F  P   : G  K  S  I  S  L  T  S  T  N  G  N  S  T  N  I  V  W  H  K  C  S  V  E  K  S  D  R  Q  E  L  L  Q  Q  R  G  C  V  I  W  I  T  G  L  S  G  S   : G  K  S  T  V  A  C  A  L  G  R  C  L  H  A  R  G  K  L  S  Y  I  L  D  G  D  N  V  R  H  G  L  N  R  D  L  S  F  A  A   </second_frame>
            <third_frame>   V  I  T  I  S  H  Q  S  S  A  S  F  L  I  S  F  V  L  P  S  F  G  V  V  H  F  F  P  S  I  Y  N  Q  S  I  R  I  Q  D  C  S  S  S  D  A  *  *  *  L  S  S  E  T  M  P  *  F  V  V  L  S  W  H  L  A  V  R  R  *  S  *  G  F  *  S  Y  R  R  V  I  A  K  L  N  H  W  A  S  T  L  P  V  P  R  *  K  P  P  S  *  R  R  *  G  K  R  R  L  L  E  S  F  I  S  T  E  N  P  Q  V  L  I  S  Q  D  T  I  Q  T  M  K  S  V  Q  T  I  F  L  A  F  L  :  V  K  V  Y  P  *  L  L  Q  T  G  I  Q  Q  T  L  F  G  T  N  A  L  *  R  K  V  T  D  R  S  C  F  S  K  G  A  V  L  Y  G  *  L  V  S  V  V  Q  :  G  R  A  L  W  H  V  L  *  V  A  V  Y  M  L  E  E  N  S  V  T  S  L  M  V  I  M  F  A  M  V  *  I  V  T  S  V  L  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22158" stop="22521"/>
                    <exon start="23133" stop="23273"/>
                    <exon start="24565" stop="24683"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRSSTFFPFNIQSIDQDSRLFQFRCLMMTVVGNNALICRPQLASCCASMKLGILKLQACNCKAKSLGFNITGTEVKTTFLAPVRKTETSRIVHINGKSASSHQPGYNSNDEISANDFSGFPGKSISLTSTNGNSTNIVWHKCSVEKSDRQELLQQRGCVIWITGLSGSGKSTVACALGRCLHARGKLSYILDGDNVRHGLNRDLSFAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="29596" PGL_stop="27239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29596" e_stop="29262"/>
            <exon e_start="28965" e_stop="28815"/>
            <exon e_start="27881" e_stop="27811"/>
            <exon e_start="27689" e_stop="27239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.951" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.841" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="29596" e_stop="29262" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.951">
            <gDNA_intron_boundary i_start="29261" i_stop="28966" i_length="296"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28965" e_stop="28815" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.841">
            <gDNA_intron_boundary i_start="28814" i_stop="27882" i_length="933"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27881" e_stop="27811" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.849">
            <gDNA_intron_boundary i_start="27810" i_stop="27690" i_length="121"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27689" e_stop="27239" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29596" stop="29262"/>
              <exon start="28965" stop="28815"/>
              <exon start="27881" stop="27811"/>
              <exon start="27689" stop="27401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27553" stop="27239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27553" stop="27239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27553" stop="27239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353717" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCTTGAGACCCAGTACTACTTCGTCGTAACTCAAACTGTTTGGGCCAACATTGTCGCCGCCGGAAACCCCTGAAGAATTACTCAGAAATCAGCGACGATGGGTGGTGACCGGTGTAGAAGCACGAGTAGCAGTAGCAGCAGCAGTGAAGAGGATGGAGATGCTGATTGGAGAGCCGCCATAGATTCTGTTGCTGCTACAACTACATTTGGCAAAACTACCGCCAAAATTCATTCATCAACTACTGCTACTAACGGAGAATCTATTGCCCATCCATTCCAAGAAGATGAAATAGATACTATCCAACCCCAGAAGCTCAAACATTATCAAATAAAG : GGCCTGAAGACTTTGGAAGACATTTTAGACAAGACTTTAGACATAGTGAGACGCGTTGATGATGCTTCACAGGAAGAAACACCCTCAATGAATGGAGGTGGAGTCCGGTTGTTTAGGCGTGCTCCACCTGGGATTCTGTTTGATCACACAG : ATGAACTCCAAAAACCCAGAAAGAAACCAAGAATTCGTCCTGGGAAGGAATTTGAGGAGAACTCAAAAGAG : TTCAAAAACCAAATCAAGTCCATTGCTGTTGATGGGATGGATATTTTAGCTGCATCTAAAAATGCTTGCCAGAAATCATTGGCCAGACTAGAAGCAAGAGAAGCAGCAGCTAAAGCAGCTGCTAAAAGAGAGGAAGAAAGAGTTGCAGCATTAAAAAAAATTAGGGGGGAGAGATGGCTCCCTGCTGTGGCCAGAGATATGCAGTCAAGACTTCAACGACGTTAACACCTGTAGATGGACTATGCTTCCATTATTCAGCACTCAATCTTTCATTTCTTTTACTCTTTATAGTTTCTATGGCTCATTTCAGCCTGTATTTTATGTTAGGCCACCTGAGCTGCTGTCCTTGTCAGTTCCAGAAAAAGACATCGACACTGTTACTGTATTGCCAAAAGAAAGGAAGAAGAATTTCCTTCTGATTAAATTCCTTTGACATTTCTATATTAAGTTC</gDNA_template>
            <first_frame> G  L  R  P  S  T  T  S  S  *  L  K  L  F  G  P  T  L  S  P  P  E  T  P  E  E  L  L  R  N  Q  R  R  W  V  V  T  G  V  E  A  R  V  A  V  A  A  A  V  K  R  M  E  M  L  I  G  E  P  P  *  I  L  L  L  L  Q  L  H  L  A  K  L  P  P  K  F  I  H  Q  L  L  L  L  T  E  N  L  L  P  I  H  S  K  K  M  K  *  I  L  S  N  P  R  S  S  N  I  I  K  *  R :   A  *  R  L  W  K  T  F  *  T  R  L  *  T  *  *  D  A  L  M  M  L  H  R  K  K  H  P  Q  *  M  E  V  E  S  G  C  L  G  V  L  H  L  G  F  C  L  I  T  Q  :  M  N  S  K  N  P  E  R  N  Q  E  F  V  L  G  R  N  L  R  R  T  Q  K  S :   S  K  T  K  S  S  P  L  L  L  M  G  W  I  F  *  L  H  L  K  M  L  A  R  N  H  W  P  D  *  K  Q  E  K  Q  Q  L  K  Q  L  L  K  E  R  K  K  E  L  Q  H  *  K  K  L  G  G  R  D  G  S  L  L  W  P  E  I  C  S  Q  D  F  N  D  V  N  T  C  R  W  T  M  L  P  L  F  S  T  Q  S  F  I  S  F  T  L  Y  S  F  Y  G  S  F  Q  P  V  F  Y  V  R  P  P  E  L  L  S  L  S  V  P  E  K  D  I  D  T  V  T  V  L  P  K  E  R  K  K  N  F  L  L  I  K  F  L  *  H  F  Y  I  K  F </first_frame>
            <second_frame>  A  *  D  P  V  L  L  R  R  N  S  N  C  L  G  Q  H  C  R  R  R  K  P  L  K  N  Y  S  E  I  S  D  D  G  W  *  P  V  *  K  H  E  *  Q  *  Q  Q  Q  *  R  G  W  R  C  *  L  E  S  R  H  R  F  C  C  C  Y  N  Y  I  W  Q  N  Y  R  Q  N  S  F  I  N  Y  C  Y  *  R  R  I  Y  C  P  S  I  P  R  R  *  N  R  Y  Y  P  T  P  E  A  Q  T  L  S  N  K   : G  P  E  D  F  G  R  H  F  R  Q  D  F  R  H  S  E  T  R  *  *  C  F  T  G  R  N  T  L  N  E  W  R  W  S  P  V  V  *  A  C  S  T  W  D  S  V  *  S  H  R :   *  T  P  K  T  Q  K  E  T  K  N  S  S  W  E  G  I  *  G  E  L  K  R   : V  Q  K  P  N  Q  V  H  C  C  *  W  D  G  Y  F  S  C  I  *  K  C  L  P  E  I  I  G  Q  T  R  S  K  R  S  S  S  *  S  S  C  *  K  R  G  R  K  S  C  S  I  K  K  N  *  G  G  E  M  A  P  C  C  G  Q  R  Y  A  V  K  T  S  T  T  L  T  P  V  D  G  L  C  F  H  Y  S  A  L  N  L  S  F  L  L  L  F  I  V  S  M  A  H  F  S  L  Y  F  M  L  G  H  L  S  C  C  P  C  Q  F  Q  K  K  T  S  T  L  L  L  Y  C  Q  K  K  G  R  R  I  S  F  *  L  N  S  F  D  I  S  I  L  S   </second_frame>
            <third_frame>   L  E  T  Q  Y  Y  F  V  V  T  Q  T  V  W  A  N  I  V  A  A  G  N  P  *  R  I  T  Q  K  S  A  T  M  G  G  D  R  C  R  S  T  S  S  S  S  S  S  S  E  E  D  G  D  A  D  W  R  A  A  I  D  S  V  A  A  T  T  T  F  G  K  T  T  A  K  I  H  S  S  T  T  A  T  N  G  E  S  I  A  H  P  F  Q  E  D  E  I  D  T  I  Q  P  Q  K  L  K  H  Y  Q  I  K  :  G  L  K  T  L  E  D  I  L  D  K  T  L  D  I  V  R  R  V  D  D  A  S  Q  E  E  T  P  S  M  N  G  G  G  V  R  L  F  R  R  A  P  P  G  I  L  F  D  H  T   : D  E  L  Q  K  P  R  K  K  P  R  I  R  P  G  K  E  F  E  E  N  S  K  E  :  F  K  N  Q  I  K  S  I  A  V  D  G  M  D  I  L  A  A  S  K  N  A  C  Q  K  S  L  A  R  L  E  A  R  E  A  A  A  K  A  A  A  K  R  E  E  E  R  V  A  A  L  K  K  I  R  G  E  R  W  L  P  A  V  A  R  D  M  Q  S  R  L  Q  R  R  *  H  L  *  M  D  Y  A  S  I  I  Q  H  S  I  F  H  F  F  Y  S  L  *  F  L  W  L  I  S  A  C  I  L  C  *  A  T  *  A  A  V  L  V  S  S  R  K  R  H  R  H  C  Y  C  I  A  K  R  K  E  E  E  F  P  S  D  *  I  P  L  T  F  L  Y  *  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29522" stop="29262"/>
                    <exon start="28965" stop="28815"/>
                    <exon start="27881" stop="27811"/>
                    <exon start="27689" stop="27465"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RITQKSATMGGDRCRSTSSSSSSSEEDGDADWRAAIDSVAATTTFGKTTAKIHSSTTATNGESIAHPFQEDEIDTIQPQKLKHYQIKGLKTLEDILDKTLDIVRRVDDASQEETPSMNGGGVRLFRRAPPGILFDHTDELQKPRKKPRIRPGKEFEENSKEFKNQIKSIAVDGMDILAASKNACQKSLARLEAREAAAKAAAKREEERVAALKKIRGERWLPAVARDMQSRLQRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="30948" PGL_stop="32734"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30948" e_stop="31202"/>
            <exon e_start="31299" e_stop="31361"/>
            <exon e_start="31452" e_stop="31555"/>
            <exon e_start="31914" e_stop="32005"/>
            <exon e_start="32109" e_stop="32198"/>
            <exon e_start="32291" e_stop="32366"/>
            <exon e_start="32446" e_stop="32734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.534" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.585" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30948" e_stop="31202" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31203" i_stop="31298" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31299" e_stop="31361" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.534" acc_prob="0.999">
            <gDNA_intron_boundary i_start="31362" i_stop="31451" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31452" e_stop="31555" e_length="104"/>
          </exon>
          <intron i_serial="3" don_prob="0.892" acc_prob="0.976">
            <gDNA_intron_boundary i_start="31556" i_stop="31913" i_length="358"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31914" e_stop="32005" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.947" acc_prob="0.898">
            <gDNA_intron_boundary i_start="32006" i_stop="32108" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32109" e_stop="32198" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="32199" i_stop="32290" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32291" e_stop="32366" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.585">
            <gDNA_intron_boundary i_start="32367" i_stop="32445" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="0.979">
            <gDNA_exon_boundary e_start="32446" e_stop="32734" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30948" stop="31202"/>
              <exon start="31299" stop="31361"/>
              <exon start="31452" stop="31555"/>
              <exon start="31914" stop="32005"/>
              <exon start="32109" stop="32124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31197" stop="31202"/>
              <exon start="31299" stop="31361"/>
              <exon start="31452" stop="31555"/>
              <exon start="31914" stop="32005"/>
              <exon start="32109" stop="32198"/>
              <exon start="32291" stop="32366"/>
              <exon start="32446" stop="32734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31198" stop="31202"/>
              <exon start="31299" stop="31361"/>
              <exon start="31452" stop="31555"/>
              <exon start="31914" stop="32005"/>
              <exon start="32109" stop="32198"/>
              <exon start="32291" stop="32366"/>
              <exon start="32446" stop="32599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233069" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACGGTATCGCCACAAGAAGCAATTTCAAGAACACAGTCAACAAGATTTCTTGTTTCTTGGAAAATAAAAGTGTTCTGCTAAAACCCTAATTCAGAGAGATTATAGTCTTTTACAAGAAAGGCATCATGGGGAAGAAACAACACAGTAAAGATCGAATGTTTATAACCAAGACAGAATGGGCAACTGAATGGGGTGGCGCTAAATCGAAAGAACTTAAAACCCCTTTTAAACGGCTTCCCTTCTATTGCTGCGC : TCTTACATTTACACCGTTCGAGGACCCAGTATGCACAAAAGATGGCAATGTTTTTGAAATAAT : GCATATAGTTCCATACATCAGGAAATATGGGAGGAATCCAGTAACTGGGGCACCTATGAAGCAAGAAGACTTAATTCCTCTTACTTTCCACAAGAACTCTGAAG : GAGAGTATCATTGTCCGGTCTTGAACAAGGTTTTTACAGAGTTCACACATATAGTTGCTGTAAGAACTACGGGAAATGTTTTCTGTTATGAG : GCAGTTAAAGAACTGAATATCAAAACAAAGAACTGGAAGGAGCTTCTCACTGATGAAGCATTCTCTAGAGAAGACCTTATAACAATTCAA : AATCCTAATGCACTGGACACCAAGGTGCTTCTAGATTTTGATCATGTTAAGAAAAATTTAAAGGTTGACGATGAAG : AAATACAGAAAATGCATTCTGACCCAACATACAACATAAATATTACTGGGGACATCAAGCAAATGCTCAAGGAACTTGGAAGTGAGAAAGCGAAAGAGATTGCACTGCATGGTGGAGGTGGGAACAAGGCACAGAATGAAAGAGCTGCTGCTCTTGAGGCTATTTTAGCTGCAAGATCACGTATCAAAGATGACGCGAAAACAAAAGAAAATGGTGAAGGAACAGCGCAGCAGACTTTCAGCATTGTGGATGCTGCATCTGCGTCAGTTCATGGAAGAAGTGCTGCTGC</gDNA_template>
            <first_frame> K  R  Y  R  H  K  K  Q  F  Q  E  H  S  Q  Q  D  F  L  F  L  G  K  *  K  C  S  A  K  T  L  I  Q  R  D  Y  S  L  L  Q  E  R  H  H  G  E  E  T  T  Q  *  R  S  N  V  Y  N  Q  D  R  M  G  N  *  M  G  W  R  *  I  E  R  T  *  N  P  F  *  T  A  S  L  L  L  L  R  :  S  Y  I  Y  T  V  R  G  P  S  M  H  K  R  W  Q  C  F  *  N  N  :  A  Y  S  S  I  H  Q  E  I  W  E  E  S  S  N  W  G  T  Y  E  A  R  R  L  N  S  S  Y  F  P  Q  E  L  *  R :   R  V  S  L  S  G  L  E  Q  G  F  Y  R  V  H  T  Y  S  C  C  K  N  Y  G  K  C  F  L  L  *   : G  S  *  R  T  E  Y  Q  N  K  E  L  E  G  A  S  H  *  *  S  I  L  *  R  R  P  Y  N  N  S   : K  S  *  C  T  G  H  Q  G  A  S  R  F  *  S  C  *  E  K  F  K  G  *  R  *  R :   N  T  E  N  A  F  *  P  N  I  Q  H  K  Y  Y  W  G  H  Q  A  N  A  Q  G  T  W  K  *  E  S  E  R  D  C  T  A  W  W  R  W  E  Q  G  T  E  *  K  S  C  C  S  *  G  Y  F  S  C  K  I  T  Y  Q  R  *  R  E  N  K  R  K  W  *  R  N  S  A  A  D  F  Q  H  C  G  C  C  I  C  V  S  S  W  K  K  C  C  C </first_frame>
            <second_frame>  N  G  I  A  T  R  S  N  F  K  N  T  V  N  K  I  S  C  F  L  E  N  K  S  V  L  L  K  P  *  F  R  E  I  I  V  F  Y  K  K  G  I  M  G  K  K  Q  H  S  K  D  R  M  F  I  T  K  T  E  W  A  T  E  W  G  G  A  K  S  K  E  L  K  T  P  F  K  R  L  P  F  Y  C  C  A :   L  T  F  T  P  F  E  D  P  V  C  T  K  D  G  N  V  F  E  I  M :   H  I  V  P  Y  I  R  K  Y  G  R  N  P  V  T  G  A  P  M  K  Q  E  D  L  I  P  L  T  F  H  K  N  S  E   : G  E  Y  H  C  P  V  L  N  K  V  F  T  E  F  T  H  I  V  A  V  R  T  T  G  N  V  F  C  Y  E  :  A  V  K  E  L  N  I  K  T  K  N  W  K  E  L  L  T  D  E  A  F  S  R  E  D  L  I  T  I  Q  :  N  P  N  A  L  D  T  K  V  L  L  D  F  D  H  V  K  K  N  L  K  V  D  D  E   : E  I  Q  K  M  H  S  D  P  T  Y  N  I  N  I  T  G  D  I  K  Q  M  L  K  E  L  G  S  E  K  A  K  E  I  A  L  H  G  G  G  G  N  K  A  Q  N  E  R  A  A  A  L  E  A  I  L  A  A  R  S  R  I  K  D  D  A  K  T  K  E  N  G  E  G  T  A  Q  Q  T  F  S  I  V  D  A  A  S  A  S  V  H  G  R  S  A  A   </second_frame>
            <third_frame>   T  V  S  P  Q  E  A  I  S  R  T  Q  S  T  R  F  L  V  S  W  K  I  K  V  F  C  *  N  P  N  S  E  R  L  *  S  F  T  R  K  A  S  W  G  R  N  N  T  V  K  I  E  C  L  *  P  R  Q  N  G  Q  L  N  G  V  A  L  N  R  K  N  L  K  P  L  L  N  G  F  P  S  I  A  A   : L  L  H  L  H  R  S  R  T  Q  Y  A  Q  K  M  A  M  F  L  K  *   : C  I  *  F  H  T  S  G  N  M  G  G  I  Q  *  L  G  H  L  *  S  K  K  T  *  F  L  L  L  S  T  R  T  L  K  :  E  S  I  I  V  R  S  *  T  R  F  L  Q  S  S  H  I  *  L  L  *  E  L  R  E  M  F  S  V  M  R :   Q  L  K  N  *  I  S  K  Q  R  T  G  R  S  F  S  L  M  K  H  S  L  E  K  T  L  *  Q  F  K :   I  L  M  H  W  T  P  R  C  F  *  I  L  I  M  L  R  K  I  *  R  L  T  M  K  :  K  Y  R  K  C  I  L  T  Q  H  T  T  *  I  L  L  G  T  S  S  K  C  S  R  N  L  E  V  R  K  R  K  R  L  H  C  M  V  E  V  G  T  R  H  R  M  K  E  L  L  L  L  R  L  F  *  L  Q  D  H  V  S  K  M  T  R  K  Q  K  K  M  V  K  E  Q  R  S  R  L  S  A  L  W  M  L  H  L  R  Q  F  M  E  E  V  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31039" stop="31202"/>
                    <exon start="31299" stop="31361"/>
                    <exon start="31452" stop="31555"/>
                    <exon start="31914" stop="32005"/>
                    <exon start="32109" stop="32198"/>
                    <exon start="32291" stop="32366"/>
                    <exon start="32446" stop="32732"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FREIIVFYKKGIMGKKQHSKDRMFITKTEWATEWGGAKSKELKTPFKRLPFYCCALTFTPFEDPVCTKDGNVFEIMHIVPYIRKYGRNPVTGAPMKQEDLIPLTFHKNSEGEYHCPVLNKVFTEFTHIVAVRTTGNVFCYEAVKELNIKTKNWKELLTDEAFSREDLITIQNPNALDTKVLLDFDHVKKNLKVDDEEIQKMHSDPTYNINITGDIKQMLKELGSEKAKEIALHGGGGNKAQNERAAALEAILAARSRIKDDAKTKENGEGTAQQTFSIVDAASASVHGRSAA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="34195" PGL_stop="35984"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34195" e_stop="34205"/>
            <exon e_start="34337" e_stop="34625"/>
            <exon e_start="35659" e_stop="35766"/>
            <exon e_start="35872" e_stop="35984"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="0.909"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="34195" e_stop="34205" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34206" i_stop="34336" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34337" e_stop="34625" e_length="289"/>
          </exon>
          <intron i_serial="2" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34626" i_stop="35658" i_length="1033"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35659" e_stop="35766" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35767" i_stop="35871" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.982">
            <gDNA_exon_boundary e_start="35872" e_stop="35984" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34195" stop="34205"/>
              <exon start="34337" stop="34625"/>
              <exon start="35659" stop="35766"/>
              <exon start="35872" stop="35984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250071" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAACATCCG : GAATTTCATGATTCAAGGTGGTGATCCAACTGGGACAGGGAAAGGAGGTGAGTCGATCTGGGGTAAGCCCTTCAAGGATGAAGTGCACTCCAAGTTGCTGCATTCTGGTAGAGGTGTTGTTAGCATGGCTAATTCTGGTCCTCACTCAAATGGCTCACAGTTCTTCATCCTGTACAAGTCTGCCACTCACTTAAATTTCAAACATACCGTCTTTGGTATGGTTGTTGGAGGCTTGCCAACACTTTCCACCATGGAGAAAGTCCCTGTTGATGACGATGACCGACCTCTG : GAAGAAATCAAGATAATAAGTGTAGAAGTTTATGTAAACCCCTATGCAGAGCTTGATGAAGAAGAGGAGAAAACAAACGATGACAACAAAACTGAAGATGCAGACAAT : GAGAAGGTTGGATCATGGTACAGCAATCCTGGAACTGGAACCTCAGAGATTCAAGCTGTTGGCAGTGGAATTGGGAAGTATTTGAAAGCAAGGGCTGCACAGGCTGATTCCAA</gDNA_template>
            <first_frame> R  N  I  R :   N  F  M  I  Q  G  G  D  P  T  G  T  G  K  G  G  E  S  I  W  G  K  P  F  K  D  E  V  H  S  K  L  L  H  S  G  R  G  V  V  S  M  A  N  S  G  P  H  S  N  G  S  Q  F  F  I  L  Y  K  S  A  T  H  L  N  F  K  H  T  V  F  G  M  V  V  G  G  L  P  T  L  S  T  M  E  K  V  P  V  D  D  D  D  R  P  L  :  E  E  I  K  I  I  S  V  E  V  Y  V  N  P  Y  A  E  L  D  E  E  E  E  K  T  N  D  D  N  K  T  E  D  A  D  N  :  E  K  V  G  S  W  Y  S  N  P  G  T  G  T  S  E  I  Q  A  V  G  S  G  I  G  K  Y  L  K  A  R  A  A  Q  A  D  S   </first_frame>
            <second_frame>  E  T  S   : G  I  S  *  F  K  V  V  I  Q  L  G  Q  G  K  E  V  S  R  S  G  V  S  P  S  R  M  K  C  T  P  S  C  C  I  L  V  E  V  L  L  A  W  L  I  L  V  L  T  Q  M  A  H  S  S  S  S  C  T  S  L  P  L  T  *  I  S  N  I  P  S  L  V  W  L  L  E  A  C  Q  H  F  P  P  W  R  K  S  L  L  M  T  M  T  D  L  W :   K  K  S  R  *  *  V  *  K  F  M  *  T  P  M  Q  S  L  M  K  K  R  R  K  Q  T  M  T  T  K  L  K  M  Q  T  M :   R  R  L  D  H  G  T  A  I  L  E  L  E  P  Q  R  F  K  L  L  A  V  E  L  G  S  I  *  K  Q  G  L  H  R  L  I  P  </second_frame>
            <third_frame>   K  H  P  :  E  F  H  D  S  R  W  *  S  N  W  D  R  E  R  R  *  V  D  L  G  *  A  L  Q  G  *  S  A  L  Q  V  A  A  F  W  *  R  C  C  *  H  G  *  F  W  S  S  L  K  W  L  T  V  L  H  P  V  Q  V  C  H  S  L  K  F  Q  T  Y  R  L  W  Y  G  C  W  R  L  A  N  T  F  H  H  G  E  S  P  C  *  *  R  *  P  T  S   : G  R  N  Q  D  N  K  C  R  S  L  C  K  P  L  C  R  A  *  *  R  R  G  E  N  K  R  *  Q  Q  N  *  R  C  R  Q   : *  E  G  W  I  M  V  Q  Q  S  W  N  W  N  L  R  D  S  S  C  W  Q  W  N  W  E  V  F  E  S  K  G  C  T  G  *  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34195" stop="34205"/>
                    <exon start="34337" stop="34625"/>
                    <exon start="35659" stop="35766"/>
                    <exon start="35872" stop="35982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNIRNFMIQGGDPTGTGKGGESIWGKPFKDEVHSKLLHSGRGVVSMANSGPHSNGSQFFILYKSATHLNFKHTVFGMVVGGLPTLSTMEKVPVDDDDRPLEEIKIISVEVYVNPYAELDEEEEKTNDDNKTEDADNEKVGSWYSNPGTGTSEIQAVGSGIGKYLKARAAQADS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="41309" PGL_stop="41838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41309" e_stop="41838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41309" e_stop="41838" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41309" stop="41838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323802" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTTTGAACCAAAATCACTAAAGGTACTACTACTAGTCTTGTACATTTATTGTTTGATGTGGCAAGAGAGATACGTAACCCTTTTAGTGTTAAATGGATACTTTGTTTAGGTTAGTTAGCCTTCAACAACAACAACAACAACAATCTGATCAATACTCTTTTAACTCCAGCAGAACTTCAAGCAGCTCTAGATCTTCTAACAAACAAAACAGCACATACAATTATCATCCACATCATAATCATCAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGATGATTTCTCTTCTTCTTCTTCTAAACACAACAACTATCCTCCTCCTCATTACAATCAATATCAACAAATCTCCACACCCACAACTACAAGCAGTACCCCAACACATCAATCTCAATCTCAATATGATCATCAATTCTCCCCAGCACGTGATTTAAATCTCGAATTCGCTTCCTCATTTTCTGGAAAATGGGCCACAGACATTCTTCTAGAAACTTCTCGTGCCATAGCCGATAAGAACAGTACACGTG</gDNA_template>
            <first_frame> C  F  E  P  K  S  L  K  V  L  L  L  V  L  Y  I  Y  C  L  M  W  Q  E  R  Y  V  T  L  L  V  L  N  G  Y  F  V  *  V  S  *  P  S  T  T  T  T  T  T  I  *  S  I  L  F  *  L  Q  Q  N  F  K  Q  L  *  I  F  *  Q  T  K  Q  H  I  Q  L  S  S  T  S  *  S  S  R  R  R  M  L  Q  L  F  H  G  *  R  *  F  L  F  F  F  F  *  T  Q  Q  L  S  S  S  S  L  Q  S  I  S  T  N  L  H  T  H  N  Y  K  Q  Y  P  N  T  S  I  S  I  S  I  *  S  S  I  L  P  S  T  *  F  K  S  R  I  R  F  L  I  F  W  K  M  G  H  R  H  S  S  R  N  F  S  C  H  S  R  *  E  Q  Y  T   </first_frame>
            <second_frame>  A  L  N  Q  N  H  *  R  Y  Y  Y  *  S  C  T  F  I  V  *  C  G  K  R  D  T  *  P  F  *  C  *  M  D  T  L  F  R  L  V  S  L  Q  Q  Q  Q  Q  Q  Q  S  D  Q  Y  S  F  N  S  S  R  T  S  S  S  S  R  S  S  N  K  Q  N  S  T  Y  N  Y  H  P  H  H  N  H  Q  D  E  E  C  F  N  F  F  M  D  E  D  D  F  S  S  S  S  S  K  H  N  N  Y  P  P  P  H  Y  N  Q  Y  Q  Q  I  S  T  P  T  T  T  S  S  T  P  T  H  Q  S  Q  S  Q  Y  D  H  Q  F  S  P  A  R  D  L  N  L  E  F  A  S  S  F  S  G  K  W  A  T  D  I  L  L  E  T  S  R  A  I  A  D  K  N  S  T  R  </second_frame>
            <third_frame>   L  *  T  K  I  T  K  G  T  T  T  S  L  V  H  L  L  F  D  V  A  R  E  I  R  N  P  F  S  V  K  W  I  L  C  L  G  *  L  A  F  N  N  N  N  N  N  N  L  I  N  T  L  L  T  P  A  E  L  Q  A  A  L  D  L  L  T  N  K  T  A  H  T  I  I  I  H  I  I  I  I  K  T  K  N  A  S  T  F  S  W  M  K  M  I  S  L  L  L  L  L  N  T  T  T  I  L  L  L  I  T  I  N  I  N  K  S  P  H  P  Q  L  Q  A  V  P  Q  H  I  N  L  N  L  N  M  I  I  N  S  P  Q  H  V  I  *  I  S  N  S  L  P  H  F  L  E  N  G  P  Q  T  F  F  *  K  L  L  V  P  *  P  I  R  T  V  H  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41403" stop="41837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDTLFRLVSLQQQQQQQSDQYSFNSSRTSSSSRSSNKQNSTYNYHPHHNHQDEECFNFFMDEDDFSSSSSKHNNYPPPHYNQYQQISTPTTTSSTPTHQSQSQYDHQFSPARDLNLEFASSFSGKWATDILLETSRAIADKNSTR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="49078" PGL_stop="45724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49078" e_stop="48776"/>
            <exon e_start="46646" e_stop="45724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49078" e_stop="48776" e_length="303"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="48775" i_stop="46647" i_length="2129"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="46646" e_stop="45724" e_length="923"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49078" stop="48833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48961" stop="48776"/>
              <exon start="46646" stop="45928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46385" stop="45724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGA : GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTGGTTACCTTTAAGAGTATCGGGGCCAGTAGACCATCCTCTTGAGTACAATTTTGGCTTCCCCTTATGGTCCAGAGTGTCTGTTTATTGGCATAAAAGATGGAGACTTCCTTATAGATGGCAGGAAATAAATTGAGTAGAGGAATCGAAAATCATTTGTACAAATATGTTTTTTCAACTTTTGGGTTTTCTAATAATTTTTCCATA</gDNA_template>
            <first_frame> A  R  A  V  K  R  K  P  K  R  P  T  T  L  I  E  E  F  L  D  E  A  S  Q  L  R  H  V  F  F  P  G  L  R  T  A  I  D  P  C  R  S  S  G  N  D  T  Y  Y  Y  Y  P  G  R  M  W  L  D  T  E  G  N  P  I  Q  A  H  G  G  G  I  L  H  D  Q  R  T  K  M  Y  Y  W  Y  G  E  Y  K  D  G  P  T  Y  H  A  H  K  K  G  A  A  R  :  V  D  V  I  G  V  G  C  Y  S  S  K  D  L  W  T  W  K  N  E  G  I  V  L  A  A  E  E  H  N  E  T  H  D  L  Y  K  L  N  V  L  E  R  P  K  V  I  Y  N  E  K  T  G  K  Y  V  M  W  M  H  I  D  D  T  N  Y  T  K  A  L  T  G  V  A  I  S  D  L  P  T  G  P  F  N  Y  L  Y  S  K  R  P  H  G  Y  E  S  R  D  M  T  L  F  K  D  D  D  G  V  A  Y  L  V  Y  S  S  E  D  N  S  E  L  H  I  G  P  L  N  E  E  Y  M  D  V  T  Q  S  M  R  R  I  L  V  G  Q  H  R  E  A  P  A  L  F  K  H  E  G  T  Y  Y  M  I  T  S  G  C  T  G  W  A  P  N  E  A  L  A  H  A  A  E  S  I  M  G  P  W  E  T  I  G  N  P  C  I  G  G  N  K  V  F  R  E  T  T  F  F  A  Q  S  T  F  V  L  P  L  P  E  L  H  G  S  F  I  F  M  A  D  R  W  N  P  A  D  L  K  D  S  R  Y  V  W  L  P  L  R  V  S  G  P  V  D  H  P  L  E  Y  N  F  G  F  P  L  W  S  R  V  S  V  Y  W  H  K  R  W  R  L  P  Y  R  W  Q  E  I  N  *  V  E  E  S  K  I  I  C  T  N  M  F  F  Q  L  L  G  F  L  I  I  F  P   </first_frame>
            <second_frame>  H  V  L  S  N  G  S  L  S  D  Q  P  P  *  L  K  N  F  L  T  R  L  R  S  *  G  M  S  F  F  L  V  *  E  L  Q  *  I  L  V  G  V  L  E  M  I  P  I  I  I  T  L  E  E  C  G  W  I  L  R  E  T  P  Y  K  L  M  G  E  V  F  Y  T  I  R  E  Q  K  C  I  I  G  T  V  S  I  K  M  G  Q  R  I  M  L  T  K  K  E  Q  H  E :   L  M  L  S  V  L  V  A  I  H  P  K  I  C  G  L  G  K  M  K  E  L  F  W  Q  Q  K  N  I  M  R  H  M  I  C  T  S  *  M  Y  W  R  G  Q  K  *  F  T  M  R  R  Q  V  N  M  *  C  G  C  I  L  M  I  Q  T  T  Q  K  L  *  L  A  *  P  *  A  T  S  P  L  V  H  L  I  I  C  T  V  N  G  P  T  D  M  K  A  G  I  *  H  S  S  K  M  M  M  V  L  H  T  S  F  T  P  Q  R  T  T  V  S  F  I  L  V  H  L  M  K  S  T  W  T  *  P  N  P  *  E  G  F  L  L  D  N  T  G  K  P  L  L  C  S  N  M  K  E  P  I  T  *  S  R  Q  V  A  L  V  G  L  R  T  R  P  *  L  M  Q  L  N  Q  L  W  G  H  G  R  P  L  E  I  R  A  S  V  G  T  K  F  L  E  K  Q  L  S  L  L  R  A  H  L  C  F  L  C  L  S  Y  M  V  P  L  F  L  W  Q  I  G  G  I  Q  L  T  *  R  I  Q  G  M  F  G  Y  L  *  E  Y  R  G  Q  *  T  I  L  L  S  T  I  L  A  S  P  Y  G  P  E  C  L  F  I  G  I  K  D  G  D  F  L  I  D  G  R  K  *  I  E  *  R  N  R  K  S  F  V  Q  I  C  F  F  N  F  W  V  F  *  *  F  F  H  </second_frame>
            <third_frame>   T  C  C  Q  T  E  A  *  A  T  N  H  L  D  *  R  I  S  *  R  G  F  A  A  K  A  C  L  F  S  W  S  K  N  C  N  R  S  L  *  E  F  W  K  *  Y  L  L  L  L  P  W  K  N  V  V  G  Y  *  G  K  P  H  T  S  S  W  G  R  Y  S  T  R  S  E  N  K  N  V  L  L  V  R  *  V  *  R  W  A  N  V  S  C  S  Q  K  R  S  S  T   : S  *  C  Y  R  C  W  L  L  F  I  Q  R  F  V  D  L  E  K  *  R  N  C  F  G  S  R  R  T  *  *  D  T  *  F  V  Q  V  K  C  T  G  E  A  K  S  N  L  Q  *  E  D  R  *  I  C  N  V  D  A  Y  *  *  Y  K  L  H  K  S  F  D  W  R  S  H  K  R  P  P  H  W  S  I  *  L  S  V  Q  *  T  A  P  R  I  *  K  Q  G  Y  D  T  L  Q  R  *  *  W  C  C  I  P  R  L  L  L  R  G  Q  Q  *  A  S  Y  W  S  T  *  *  R  V  H  G  R  D  P  I  H  E  K  D  S  C  W  T  T  Q  G  S  P  C  F  V  Q  T  *  R  N  L  L  H  D  H  V  R  L  H  W  L  G  S  E  R  G  P  S  S  C  S  *  I  N  Y  G  A  M  G  D  H  W  K  S  V  H  R  W  E  Q  S  F  *  R  N  N  F  L  C  S  E  H  I  C  A  S  F  A  *  A  T  W  F  L  Y  F  Y  G  R  S  V  E  S  S  *  L  E  G  F  K  V  C  L  V  T  F  K  S  I  G  A  S  R  P  S  S  *  V  Q  F  W  L  P  L  M  V  Q  S  V  C  L  L  A  *  K  M  E  T  S  L  *  M  A  G  N  K  L  S  R  G  I  E  N  H  L  Y  K  Y  V  F  S  T  F  G  F  S  N  N  F  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49078" stop="48776"/>
                    <exon start="46646" stop="45795"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1152</number_coding_nucleotides>
                  <number_encoded_amino_acids>384</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARAVKRKPKRPTTLIEEFLDEASQLRHVFFPGLRTAIDPCRSSGNDTYYYYPGRMWLDTEGNPIQAHGGGILHDQRTKMYYWYGEYKDGPTYHAHKKGAARVDVIGVGCYSSKDLWTWKNEGIVLAAEEHNETHDLYKLNVLERPKVIYNEKTGKYVMWMHIDDTNYTKALTGVAISDLPTGPFNYLYSKRPHGYESRDMTLFKDDDGVAYLVYSSEDNSELHIGPLNEEYMDVTQSMRRILVGQHREAPALFKHEGTYYMITSGCTGWAPNEALAHAAESIMGPWETIGNPCIGGNKVFRETTFFAQSTFVLPLPELHGSFIFMADRWNPADLKDSRYVWLPLRVSGPVDHPLEYNFGFPLWSRVSVYWHKRWRLPYRWQEIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49078" e_stop="48746"/>
            <exon e_start="46646" e_stop="45724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49078" e_stop="48746" e_length="333"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.980">
            <gDNA_intron_boundary i_start="48745" i_stop="46647" i_length="2099"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46646" e_stop="45724" e_length="923"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49078" stop="48746"/>
              <exon start="46646" stop="46365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49078" stop="48833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46385" stop="45724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCACGTGCTGTCAAACGGAAGCCTAAGCGACCAACCACCTTGATTGAAGAATTTCTTGACGAGGCTTCGCAGCTAAGGCATGTCTTTTTTCCTGGTCTAAGAACTGCAATAGATCCTTGTAGGAGTTCTGGAAATGATACCTATTATTATTACCCTGGAAGAATGTGGTTGGATACTGAGGGAAACCCCATACAAGCTCATGGGGGAGGTATTCTACACGATCAGAGAACAAAAATGTATTATTGGTACGGTGAGTATAAAGATGGGCCAACGTATCATGCTCACAAAAAAGGAGCAGCACGAGTAAGTCCTGGATTTCATACACTTTTATAG : GTTGATGTTATCGGTGTTGGTTGCTATTCATCCAAAGATTTGTGGACTTGGAAAAATGAAGGAATTGTTTTGGCAGCAGAAGAACATAATGAGACACATGATTTGTACAAGTTAAATGTACTGGAGAGGCCAAAAGTAATTTACAATGAGAAGACAGGTAAATATGTAATGTGGATGCATATTGATGATACAAACTACACAAAAGCTTTGACTGGCGTAGCCATAAGCGACCTCCCCACTGGTCCATTTAATTATCTGTACAGTAAACGGCCCCACGGATATGAAAGCAGGGATATGACACTCTTCAAAGATGATGATGGTGTTGCATACCTCGTTTACTCCTCAGAGGACAACAGTGAGCTTCATATTGGTCCACTTAATGAAGAGTACATGGACGTGACCCAATCCATGAGAAGGATTCTTGTTGGACAACACAGGGAAGCCCCTGCTTTGTTCAAACATGAAGGAACCTATTACATGATCACGTCAGGTTGCACTGGTTGGGCTCCGAACGAGGCCCTAGCTCATGCAGCTGAATCAATTATGGGGCCATGGGAGACCATTGGAAATCCGTGCATCGGTGGGAACAAAGTTTTTAGAGAAACAACTTTCTTTGCTCAGAGCACATTTGTGCTTCCTTTGCCTGAGCTACATGGTTCCTTTATTTTTATGGCAGATCGGTGGAATCCAGCTGACTTGAAGGATTCAAGGTATGTTTGGTTACCTTTAAGAGTATCGGGGCCAGTAGACCATCCTCTTGAGTACAATTTTGGCTTCCCCTTATGGTCCAGAGTGTCTGTTTATTGGCATAAAAGATGGAGACTTCCTTATAGATGGCAGGAAATAAATTGAGTAGAGGAATCGAAAATCATTTGTACAAATATGTTTTTTCAACTTTTGGGTTTTCTAATAATTTTTCCATA</gDNA_template>
            <first_frame> A  R  A  V  K  R  K  P  K  R  P  T  T  L  I  E  E  F  L  D  E  A  S  Q  L  R  H  V  F  F  P  G  L  R  T  A  I  D  P  C  R  S  S  G  N  D  T  Y  Y  Y  Y  P  G  R  M  W  L  D  T  E  G  N  P  I  Q  A  H  G  G  G  I  L  H  D  Q  R  T  K  M  Y  Y  W  Y  G  E  Y  K  D  G  P  T  Y  H  A  H  K  K  G  A  A  R  V  S  P  G  F  H  T  L  L  *  :  V  D  V  I  G  V  G  C  Y  S  S  K  D  L  W  T  W  K  N  E  G  I  V  L  A  A  E  E  H  N  E  T  H  D  L  Y  K  L  N  V  L  E  R  P  K  V  I  Y  N  E  K  T  G  K  Y  V  M  W  M  H  I  D  D  T  N  Y  T  K  A  L  T  G  V  A  I  S  D  L  P  T  G  P  F  N  Y  L  Y  S  K  R  P  H  G  Y  E  S  R  D  M  T  L  F  K  D  D  D  G  V  A  Y  L  V  Y  S  S  E  D  N  S  E  L  H  I  G  P  L  N  E  E  Y  M  D  V  T  Q  S  M  R  R  I  L  V  G  Q  H  R  E  A  P  A  L  F  K  H  E  G  T  Y  Y  M  I  T  S  G  C  T  G  W  A  P  N  E  A  L  A  H  A  A  E  S  I  M  G  P  W  E  T  I  G  N  P  C  I  G  G  N  K  V  F  R  E  T  T  F  F  A  Q  S  T  F  V  L  P  L  P  E  L  H  G  S  F  I  F  M  A  D  R  W  N  P  A  D  L  K  D  S  R  Y  V  W  L  P  L  R  V  S  G  P  V  D  H  P  L  E  Y  N  F  G  F  P  L  W  S  R  V  S  V  Y  W  H  K  R  W  R  L  P  Y  R  W  Q  E  I  N  *  V  E  E  S  K  I  I  C  T  N  M  F  F  Q  L  L  G  F  L  I  I  F  P   </first_frame>
            <second_frame>  H  V  L  S  N  G  S  L  S  D  Q  P  P  *  L  K  N  F  L  T  R  L  R  S  *  G  M  S  F  F  L  V  *  E  L  Q  *  I  L  V  G  V  L  E  M  I  P  I  I  I  T  L  E  E  C  G  W  I  L  R  E  T  P  Y  K  L  M  G  E  V  F  Y  T  I  R  E  Q  K  C  I  I  G  T  V  S  I  K  M  G  Q  R  I  M  L  T  K  K  E  Q  H  E  *  V  L  D  F  I  H  F  Y  R :   L  M  L  S  V  L  V  A  I  H  P  K  I  C  G  L  G  K  M  K  E  L  F  W  Q  Q  K  N  I  M  R  H  M  I  C  T  S  *  M  Y  W  R  G  Q  K  *  F  T  M  R  R  Q  V  N  M  *  C  G  C  I  L  M  I  Q  T  T  Q  K  L  *  L  A  *  P  *  A  T  S  P  L  V  H  L  I  I  C  T  V  N  G  P  T  D  M  K  A  G  I  *  H  S  S  K  M  M  M  V  L  H  T  S  F  T  P  Q  R  T  T  V  S  F  I  L  V  H  L  M  K  S  T  W  T  *  P  N  P  *  E  G  F  L  L  D  N  T  G  K  P  L  L  C  S  N  M  K  E  P  I  T  *  S  R  Q  V  A  L  V  G  L  R  T  R  P  *  L  M  Q  L  N  Q  L  W  G  H  G  R  P  L  E  I  R  A  S  V  G  T  K  F  L  E  K  Q  L  S  L  L  R  A  H  L  C  F  L  C  L  S  Y  M  V  P  L  F  L  W  Q  I  G  G  I  Q  L  T  *  R  I  Q  G  M  F  G  Y  L  *  E  Y  R  G  Q  *  T  I  L  L  S  T  I  L  A  S  P  Y  G  P  E  C  L  F  I  G  I  K  D  G  D  F  L  I  D  G  R  K  *  I  E  *  R  N  R  K  S  F  V  Q  I  C  F  F  N  F  W  V  F  *  *  F  F  H  </second_frame>
            <third_frame>   T  C  C  Q  T  E  A  *  A  T  N  H  L  D  *  R  I  S  *  R  G  F  A  A  K  A  C  L  F  S  W  S  K  N  C  N  R  S  L  *  E  F  W  K  *  Y  L  L  L  L  P  W  K  N  V  V  G  Y  *  G  K  P  H  T  S  S  W  G  R  Y  S  T  R  S  E  N  K  N  V  L  L  V  R  *  V  *  R  W  A  N  V  S  C  S  Q  K  R  S  S  T  S  K  S  W  I  S  Y  T  F  I   : G  *  C  Y  R  C  W  L  L  F  I  Q  R  F  V  D  L  E  K  *  R  N  C  F  G  S  R  R  T  *  *  D  T  *  F  V  Q  V  K  C  T  G  E  A  K  S  N  L  Q  *  E  D  R  *  I  C  N  V  D  A  Y  *  *  Y  K  L  H  K  S  F  D  W  R  S  H  K  R  P  P  H  W  S  I  *  L  S  V  Q  *  T  A  P  R  I  *  K  Q  G  Y  D  T  L  Q  R  *  *  W  C  C  I  P  R  L  L  L  R  G  Q  Q  *  A  S  Y  W  S  T  *  *  R  V  H  G  R  D  P  I  H  E  K  D  S  C  W  T  T  Q  G  S  P  C  F  V  Q  T  *  R  N  L  L  H  D  H  V  R  L  H  W  L  G  S  E  R  G  P  S  S  C  S  *  I  N  Y  G  A  M  G  D  H  W  K  S  V  H  R  W  E  Q  S  F  *  R  N  N  F  L  C  S  E  H  I  C  A  S  F  A  *  A  T  W  F  L  Y  F  Y  G  R  S  V  E  S  S  *  L  E  G  F  K  V  C  L  V  T  F  K  S  I  G  A  S  R  P  S  S  *  V  Q  F  W  L  P  L  M  V  Q  S  V  C  L  L  A  *  K  M  E  T  S  L  *  M  A  G  N  K  L  S  R  G  I  E  N  H  L  Y  K  Y  V  F  S  T  F  G  F  S  N  N  F  S  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46646" stop="45795"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDVIGVGCYSSKDLWTWKNEGIVLAAEEHNETHDLYKLNVLERPKVIYNEKTGKYVMWMHIDDTNYTKALTGVAISDLPTGPFNYLYSKRPHGYESRDMTLFKDDDGVAYLVYSSEDNSELHIGPLNEEYMDVTQSMRRILVGQHREAPALFKHEGTYYMITSGCTGWAPNEALAHAAESIMGPWETIGNPCIGGNKVFRETTFFAQSTFVLPLPELHGSFIFMADRWNPADLKDSRYVWLPLRVSGPVDHPLEYNFGFPLWSRVSVYWHKRWRLPYRWQEIN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49078" stop="48746"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARAVKRKPKRPTTLIEEFLDEASQLRHVFFPGLRTAIDPCRSSGNDTYYYYPGRMWLDTEGNPIQAHGGGILHDQRTKMYYWYGEYKDGPTYHAHKKGAARVSPGFHTLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="45731" PGL_stop="46629"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45731" e_stop="46629"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="45731" e_stop="46629" e_length="899"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45731" stop="46629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553975" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTATTAGAAAACCCAAAAGTTGAAAAAACATATTTGTACAAATGATTTTCGATTCCTCTACTCAATTTATTTCCTGCCATCTATAAGGAAGTCTCCATCTTTTATGCCAATAAACAGACACTCTGGACCATAAGGGGAAGCCAAAATTGTACTCAAGAGGATGGTCTACTGGCCCCGATACTCTTAAAGGTAACCAAACATACCTTGAATCCTTCAAGTCAGCTGGATTCCACCGATCTGCCATAAAAATAAAGGAACCATGTAGCTCAGGCAAAGGAAGCACAAATGTGCTCTGAGCAAAGAAAGTTGTTTCTCTAAAAACTTTGTTCCCACCGATGCACGGATTTCCAATGGTCTCCCATGGCCCCATAATTGATTCAGCTGCATGAGCTAGGGCCTCGTTCGGAGCCCAACCAGTGCAACCTGACGTGATCATGTAATAGGTTCCTTCATGTTTGAACAAAGCAGGGGCTTCCCTGTGTTGTCCAACAAGAATCCTTCTCATGGATTGGGTCACGTCCATGTACTCTTCATTAAGTGGACCAATATGAAGCTCACTGTTGTCCTCTGAGGAGTAAACGAGGTATGCAACACCATCATCATCTTTGAAGAGTGTCATATCCCTGCTTTCATATCCGTGGGGCCGTTTACTGTACAGATAATTAAATGGACCAGTGGGGAGGTCGCTTATGGCTACGCCAGTCAAAGCTTTTGTGTAGTTTGTATCATCAATATGCATCCACATTACATATTTACCTGTCTTCTCATTGTAAATTACTTTTGGCCTCTCCAGTACATTTAACTTGTACAAATCATGTGTCTCATTATGTTCTTCTGCTGCCAAAACAATTCCTTCATTTTTCCAAGTCCACAAATCTTTGGATGAATAGCAACCA</gDNA_template>
            <first_frame> K  L  L  E  N  P  K  V  E  K  T  Y  L  Y  K  *  F  S  I  P  L  L  N  L  F  P  A  I  Y  K  E  V  S  I  F  Y  A  N  K  Q  T  L  W  T  I  R  G  S  Q  N  C  T  Q  E  D  G  L  L  A  P  I  L  L  K  V  T  K  H  T  L  N  P  S  S  Q  L  D  S  T  D  L  P  *  K  *  R  N  H  V  A  Q  A  K  E  A  Q  M  C  S  E  Q  R  K  L  F  L  *  K  L  C  S  H  R  C  T  D  F  Q  W  S  P  M  A  P  *  L  I  Q  L  H  E  L  G  P  R  S  E  P  N  Q  C  N  L  T  *  S  C  N  R  F  L  H  V  *  T  K  Q  G  L  P  C  V  V  Q  Q  E  S  F  S  W  I  G  S  R  P  C  T  L  H  *  V  D  Q  Y  E  A  H  C  C  P  L  R  S  K  R  G  M  Q  H  H  H  H  L  *  R  V  S  Y  P  C  F  H  I  R  G  A  V  Y  C  T  D  N  *  M  D  Q  W  G  G  R  L  W  L  R  Q  S  K  L  L  C  S  L  Y  H  Q  Y  A  S  T  L  H  I  Y  L  S  S  H  C  K  L  L  L  A  S  P  V  H  L  T  C  T  N  H  V  S  H  Y  V  L  L  L  P  K  Q  F  L  H  F  S  K  S  T  N  L  W  M  N  S  N   </first_frame>
            <second_frame>  N  Y  *  K  T  Q  K  L  K  K  H  I  C  T  N  D  F  R  F  L  Y  S  I  Y  F  L  P  S  I  R  K  S  P  S  F  M  P  I  N  R  H  S  G  P  *  G  E  A  K  I  V  L  K  R  M  V  Y  W  P  R  Y  S  *  R  *  P  N  I  P  *  I  L  Q  V  S  W  I  P  P  I  C  H  K  N  K  G  T  M  *  L  R  Q  R  K  H  K  C  A  L  S  K  E  S  C  F  S  K  N  F  V  P  T  D  A  R  I  S  N  G  L  P  W  P  H  N  *  F  S  C  M  S  *  G  L  V  R  S  P  T  S  A  T  *  R  D  H  V  I  G  S  F  M  F  E  Q  S  R  G  F  P  V  L  S  N  K  N  P  S  H  G  L  G  H  V  H  V  L  F  I  K  W  T  N  M  K  L  T  V  V  L  *  G  V  N  E  V  C  N  T  I  I  I  F  E  E  C  H  I  P  A  F  I  S  V  G  P  F  T  V  Q  I  I  K  W  T  S  G  E  V  A  Y  G  Y  A  S  Q  S  F  C  V  V  C  I  I  N  M  H  P  H  Y  I  F  T  C  L  L  I  V  N  Y  F  W  P  L  Q  Y  I  *  L  V  Q  I  M  C  L  I  M  F  F  C  C  Q  N  N  S  F  I  F  P  S  P  Q  I  F  G  *  I  A  T  </second_frame>
            <third_frame>   I  I  R  K  P  K  S  *  K  N  I  F  V  Q  M  I  F  D  S  S  T  Q  F  I  S  C  H  L  *  G  S  L  H  L  L  C  Q  *  T  D  T  L  D  H  K  G  K  P  K  L  Y  S  R  G  W  S  T  G  P  D  T  L  K  G  N  Q  T  Y  L  E  S  F  K  S  A  G  F  H  R  S  A  I  K  I  K  E  P  C  S  S  G  K  G  S  T  N  V  L  *  A  K  K  V  V  S  L  K  T  L  F  P  P  M  H  G  F  P  M  V  S  H  G  P  I  I  D  S  A  A  *  A  R  A  S  F  G  A  Q  P  V  Q  P  D  V  I  M  *  *  V  P  S  C  L  N  K  A  G  A  S  L  C  C  P  T  R  I  L  L  M  D  W  V  T  S  M  Y  S  S  L  S  G  P  I  *  S  S  L  L  S  S  E  E  *  T  R  Y  A  T  P  S  S  S  L  K  S  V  I  S  L  L  S  Y  P  W  G  R  L  L  Y  R  *  L  N  G  P  V  G  R  S  L  M  A  T  P  V  K  A  F  V  *  F  V  S  S  I  C  I  H  I  T  Y  L  P  V  F  S  L  *  I  T  F  G  L  S  S  T  F  N  L  Y  K  S  C  V  S  L  C  S  S  A  A  K  T  I  P  S  F  F  Q  V  H  K  S  L  D  E  *  Q  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46400" stop="46627"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDQWGGRLWLRQSKLLCSLYHQYASTLHIYLSSHCKLLLASPVHLTCTNHVSHYVLLLPKQFLHFSKSTNLWMNSN</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46305" stop="46535"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVNEVCNTIIIFEECHIPAFISVGPFTVQIIKWTSGEVAYGYASQSFCVVCIINMHPHYIFTCLLIVNYFWPLQYI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45779" stop="45979"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSIPLLNLFPAIYKEVSIFYANKQTLWTIRGSQNCTQEDGLLAPILLKVTKHTLNPSSQLDSTDLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="50682" PGL_stop="49196"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50682" e_stop="50325"/>
            <exon e_start="49355" e_stop="49196"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="0.992"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="50682" e_stop="50325" e_length="358"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="50324" i_stop="49356" i_length="969"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49355" e_stop="49196" e_length="160"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50682" stop="50325"/>
              <exon start="49355" stop="49196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGTGCTGTGGAGAGAGAAAGAGAAGGAGATCGGAGAAGTAAGCTTAGATAGGTGGAATTTAGGGGGCCAAGGGAAGATCTTTGGTCTCAAGTTATCATCATTATTAACATTCCAAGATCCAATAAACAGCTTATTCTATAACCTTTTTCTACTCCTTAACCCTTATCTTCCCCTTCAATTTGGTAGGTTGGGGCAAGATATTGCAGAAATTAACTTTTCAACAGCTAGTTAAGCAGCTGATCTTGAGGGGAACTTCATATGCGCAGAACTTGATGATTAGCTCAACTGACTGAGCAACTTCGATTGAAACATATGTCGAGAGATTTCGTTCAATCTTCAGTTTGGTTGTTTTCGG : CATTACATTAAGATAAAAAGGGAACAAAATGAGGTTGAAGAACAAATCCAGGAATCTAACGACTATACGTTGCTATCCAGGACGCAGATGCTCATTTTCAGTTCTCTTATGGAGTATAGTCGGTTGCCTTGTTTTACTTAATCTATATTGCTTTATTTTC</gDNA_template>
            <first_frame> G  S  A  V  E  R  E  R  E  G  D  R  R  S  K  L  R  *  V  E  F  R  G  P  R  E  D  L  W  S  Q  V  I  I  I  I  N  I  P  R  S  N  K  Q  L  I  L  *  P  F  S  T  P  *  P  L  S  S  P  S  I  W  *  V  G  A  R  Y  C  R  N  *  L  F  N  S  *  L  S  S  *  S  *  G  E  L  H  M  R  R  T  *  *  L  A  Q  L  T  E  Q  L  R  L  K  H  M  S  R  D  F  V  Q  S  S  V  W  L  F  S   : A  L  H  *  D  K  K  G  T  K  *  G  *  R  T  N  P  G  I  *  R  L  Y  V  A  I  Q  D  A  D  A  H  F  Q  F  S  Y  G  V  *  S  V  A  L  F  Y  L  I  Y  I  A  L  F   </first_frame>
            <second_frame>  E  V  L  W  R  E  K  E  K  E  I  G  E  V  S  L  D  R  W  N  L  G  G  Q  G  K  I  F  G  L  K  L  S  S  L  L  T  F  Q  D  P  I  N  S  L  F  Y  N  L  F  L  L  L  N  P  Y  L  P  L  Q  F  G  R  L  G  Q  D  I  A  E  I  N  F  S  T  A  S  *  A  A  D  L  E  G  N  F  I  C  A  E  L  D  D  *  L  N  *  L  S  N  F  D  *  N  I  C  R  E  I  S  F  N  L  Q  F  G  C  F  R  :  H  Y  I  K  I  K  R  E  Q  N  E  V  E  E  Q  I  Q  E  S  N  D  Y  T  L  L  S  R  T  Q  M  L  I  F  S  S  L  M  E  Y  S  R  L  P  C  F  T  *  S  I  L  L  Y  F  </second_frame>
            <third_frame>   K  C  C  G  E  R  K  R  R  R  S  E  K  *  A  *  I  G  G  I  *  G  A  K  G  R  S  L  V  S  S  Y  H  H  Y  *  H  S  K  I  Q  *  T  A  Y  S  I  T  F  F  Y  S  L  T  L  I  F  P  F  N  L  V  G  W  G  K  I  L  Q  K  L  T  F  Q  Q  L  V  K  Q  L  I  L  R  G  T  S  Y  A  Q  N  L  M  I  S  S  T  D  *  A  T  S  I  E  T  Y  V  E  R  F  R  S  I  F  S  L  V  V  F  G :   I  T  L  R  *  K  G  N  K  M  R  L  K  N  K  S  R  N  L  T  T  I  R  C  Y  P  G  R  R  C  S  F  S  V  L  L  W  S  I  V  G  C  L  V  L  L  N  L  Y  C  F  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50681" stop="50448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVLWREKEKEIGEVSLDRWNLGGQGKIFGLKLSSLLTFQDPINSLFYNLFLLLNPYLPLQFGRLGQDIAEINFSTAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="55864" PGL_stop="54198"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55864" e_stop="55600"/>
            <exon e_start="55513" e_stop="55442"/>
            <exon e_start="55356" e_stop="54964"/>
            <exon e_start="54867" e_stop="54198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.934" acc_prob="0.140" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55864" e_stop="55600" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.934" acc_prob="0.140">
            <gDNA_intron_boundary i_start="55599" i_stop="55514" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55513" e_stop="55442" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.875">
            <gDNA_intron_boundary i_start="55441" i_stop="55357" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55356" e_stop="54964" e_length="393"/>
          </exon>
          <intron i_serial="3" don_prob="0.922" acc_prob="0.993">
            <gDNA_intron_boundary i_start="54963" i_stop="54868" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="54867" e_stop="54198" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55864" stop="55600"/>
              <exon start="55513" stop="55442"/>
              <exon start="55356" stop="54980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55863" stop="55600"/>
              <exon start="55513" stop="55442"/>
              <exon start="55356" stop="55266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55087" stop="54964"/>
              <exon start="54867" stop="54198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAAT : AATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATAC : CTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCTGGAACTTCTGACAAAACGTTGGAGCAGATTGGCGCCACGGTTCATAATTTCATTACTCAGGTACTGTTATCTATAATATACAAGAAACAAGGATAGGAGCTTACATATATTCTTAGCATTATCTTTGTGTTTTCGATTTCCAGCTTAATTCTAAGCTGAGAGAGGTACAAGGATTAGGATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATAT : GTTCTGTCAAAAGTCACATGTTATGAAGGAAATTCTTCAGGAAATTGCGCGGGTGAAGGAAGATTCATTCCACAGGCCTCATCTGTGATATTATTCGCTTATACTCAATCTATTCAAGACCTGATAGAAATATTCCCTGATTTGCTGAGCCTAAGTCAATGCTCCAAAGTAAAACAAGCATTCGCCAACATTTTACAGTACCAGTGCAGGCCATTTAGACGTTCAGCACGAGTACTATGGTCATCTATGTTGTCACTCTCCATTCTCATGATACTTTTAGTACTAACATTGATAGTAAAAGCTCACCAAGAAACTGGAAGAAGCTTTGATACATGCTCCATTACTCCTAAAAAAGTTGAAACAATACCAAAAACCTTGCCAGATTGCAGTAATTCTGCAGACAATGTACAGAAAATGTAGATGCTTTGCATTTTTTTTTCTTTTTTTGTAGTTATAGATGGAAGTATACAGTATACCCATTCCCCTGAAGTCGTAAGACGCCAAAAAAATGGGGGTTAAGTTATAGAAAATAGAAATAGAGAATTCTTACTAAACTTGTACTTGATATATTGTTCTTGTCATGTACACGACTTAATAACTGTGTACATATTTGACATGAACAGTGATTGATGGATACTAGAGGCTAACTTTGGCCTTGTAAATTTGCTCA</gDNA_template>
            <first_frame> L  S  H  N  A  S  L  S  F  R  K  Y  F  H  V  Y  K  T  R  D  S  V  K  F  D  N  L  I  *  V  I  S  Y  Y  T  I  S  T  F  S  S  C  L  L  A  F  D  F  P  V  *  S  V  P  S  N  V  C  L  N  R  S  S  M  S  W  L  D  *  W  N  A  A  L  A  Q  F  Y  S  F  G  T  G  L  L  D  L  *   : *  *  S  S  A  A  G  F  *  Q  L  *  V  G  C  *  L  V  L  I  S  F  S  I   : P  L  Q  M  T  L  A  Q  L  *  R  T  F  N  R  I  L  R  T  I  A  C  K  L  Y  F  P  V  Q  I  L  E  L  L  T  K  R  W  S  R  L  A  P  R  F  I  I  S  L  L  R  Y  C  Y  L  *  Y  T  R  N  K  D  R  S  L  H  I  F  L  A  L  S  L  C  F  R  F  P  A  *  F  *  A  E  R  G  T  R  I  R  I  K  *  Y  R  G  K  *  R  R  N  N  L  *  P  L  L  W  C  T  *  L  Q  L  H  T  *  S  V  P  K  G  Y  Y  P  N  *  R  S  E  I   : C  S  V  K  S  H  M  L  *  R  K  F  F  R  K  L  R  G  *  R  K  I  H  S  T  G  L  I  C  D  I  I  R  L  Y  S  I  Y  S  R  P  D  R  N  I  P  *  F  A  E  P  K  S  M  L  Q  S  K  T  S  I  R  Q  H  F  T  V  P  V  Q  A  I  *  T  F  S  T  S  T  M  V  I  Y  V  V  T  L  H  S  H  D  T  F  S  T  N  I  D  S  K  S  S  P  R  N  W  K  K  L  *  Y  M  L  H  Y  S  *  K  S  *  N  N  T  K  N  L  A  R  L  Q  *  F  C  R  Q  C  T  E  N  V  D  A  L  H  F  F  F  F  F  C  S  Y  R  W  K  Y  T  V  Y  P  F  P  *  S  R  K  T  P  K  K  W  G  L  S  Y  R  K  *  K  *  R  I  L  T  K  L  V  L  D  I  L  F  L  S  C  T  R  L  N  N  C  V  H  I  *  H  E  Q  *  L  M  D  T  R  G  *  L  W  P  C  K  F  A   </first_frame>
            <second_frame>  C  H  T  M  H  H  Y  L  L  E  S  I  F  M  C  I  K  L  E  I  L  *  N  L  I  I  L  Y  E  L  *  A  I  T  R  F  L  L  F  L  A  V  F  L  L  L  I  F  L  Y  S  Q  F  L  L  T  Y  V  *  I  D  H  Q  C  H  G  *  T  N  G  M  L  L  W  L  S  F  T  H  L  A  L  A  S  W  I  Y  N  :  N  N  P  L  L  L  D  F  D  N  S  E  L  G  A  D  W  F  *  F  L  F  P  Y  :  L  C  R  *  H  L  L  S  F  E  G  L  S  T  E  S  S  E  Q  *  L  A  N  Y  T  S  L  C  K  S  W  N  F  *  Q  N  V  G  A  D  W  R  H  G  S  *  F  H  Y  S  G  T  V  I  Y  N  I  Q  E  T  R  I  G  A  Y  I  Y  S  *  H  Y  L  C  V  F  D  F  Q  L  N  S  K  L  R  E  V  Q  G  L  G  L  N  D  I  G  E  N  S  V  G  T  I  C  D  P  F  S  G  A  P  N  Y  S  F  T  P  D  L  C  P  K  D  T  I  P  I  E  D  L  K  Y  :  V  L  S  K  V  T  C  Y  E  G  N  S  S  G  N  C  A  G  E  G  R  F  I  P  Q  A  S  S  V  I  L  F  A  Y  T  Q  S  I  Q  D  L  I  E  I  F  P  D  L  L  S  L  S  Q  C  S  K  V  K  Q  A  F  A  N  I  L  Q  Y  Q  C  R  P  F  R  R  S  A  R  V  L  W  S  S  M  L  S  L  S  I  L  M  I  L  L  V  L  T  L  I  V  K  A  H  Q  E  T  G  R  S  F  D  T  C  S  I  T  P  K  K  V  E  T  I  P  K  T  L  P  D  C  S  N  S  A  D  N  V  Q  K  M  *  M  L  C  I  F  F  S  F  F  V  V  I  D  G  S  I  Q  Y  T  H  S  P  E  V  V  R  R  Q  K  N  G  G  *  V  I  E  N  R  N  R  E  F  L  L  N  L  Y  L  I  Y  C  S  C  H  V  H  D  L  I  T  V  Y  I  F  D  M  N  S  D  *  W  I  L  E  A  N  F  G  L  V  N  L  L  </second_frame>
            <third_frame>   V  T  Q  C  I  I  I  F  *  K  V  F  S  C  V  *  N  *  R  F  C  E  I  *  *  S  Y  M  S  Y  K  L  L  H  D  F  Y  F  F  *  L  S  S  C  F  *  F  S  C  I  V  S  S  F  *  R  M  F  K  S  I  I  N  V  M  V  R  L  M  E  C  C  F  G  S  V  L  L  I  W  H  W  P  L  G  F  I  I :   I  I  L  C  C  W  I  L  T  T  L  S  W  V  L  T  G  F  D  F  F  F  H  T :   F  A  D  D  T  C  S  A  L  K  D  F  Q  Q  N  P  Q  N  N  S  L  Q  I  I  L  P  C  A  N  P  G  T  S  D  K  T  L  E  Q  I  G  A  T  V  H  N  F  I  T  Q  V  L  L  S  I  I  Y  K  K  Q  G  *  E  L  T  Y  I  L  S  I  I  F  V  F  S  I  S  S  L  I  L  S  *  E  R  Y  K  D  *  D  *  M  I  S  G  K  I  A  *  E  Q  F  V  T  P  S  L  V  H  L  I  T  A  S  H  L  I  C  A  Q  R  I  L  S  Q  L  K  I  *  N  M :   F  C  Q  K  S  H  V  M  K  E  I  L  Q  E  I  A  R  V  K  E  D  S  F  H  R  P  H  L  *  Y  Y  S  L  I  L  N  L  F  K  T  *  *  K  Y  S  L  I  C  *  A  *  V  N  A  P  K  *  N  K  H  S  P  T  F  Y  S  T  S  A  G  H  L  D  V  Q  H  E  Y  Y  G  H  L  C  C  H  S  P  F  S  *  Y  F  *  Y  *  H  *  *  *  K  L  T  K  K  L  E  E  A  L  I  H  A  P  L  L  L  K  K  L  K  Q  Y  Q  K  P  C  Q  I  A  V  I  L  Q  T  M  Y  R  K  C  R  C  F  A  F  F  F  L  F  L  *  L  *  M  E  V  Y  S  I  P  I  P  L  K  S  *  D  A  K  K  M  G  V  K  L  *  K  I  E  I  E  N  S  Y  *  T  C  T  *  Y  I  V  L  V  M  Y  T  T  *  *  L  C  T  Y  L  T  *  T  V  I  D  G  Y  *  R  L  T  L  A  L  *  I  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55149" stop="54964"/>
                    <exon start="54867" stop="54448"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HYLCVFDFQLNSKLREVQGLGLNDIGENSVGTICDPFSGAPNYSFTPDLCPKDTIPIEDLKYVLSKVTCYEGNSSGNCAGEGRFIPQASSVILFAYTQSIQDLIEIFPDLLSLSQCSKVKQAFANILQYQCRPFRRSARVLWSSMLSLSILMILLVLTLIVKAHQETGRSFDTCSITPKKVETIPKTLPDCSNSADNVQKM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55697" stop="55600"/>
                    <exon start="55513" stop="55442"/>
                    <exon start="55356" stop="55170"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMFKSIINVMVRLMECCFGSVLLIWHWPLGFIIIILCCWILTTLSWVLTGFDFFFHTFADDTCSALKDFQQNPQNNSLQIILPCANPGTSDKTLEQIGATVHNFITQVLLSIIYKKQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="57579" PGL_stop="56143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57579" e_stop="57242"/>
            <exon e_start="57145" e_stop="56958"/>
            <exon e_start="56296" e_stop="56143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.841" acc_prob="0.980" e_score="0.982"/>
          <exon-intron don_prob="0.758" acc_prob="0.963" e_score="0.973"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="57579" e_stop="57242" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="0.841" acc_prob="0.980">
            <gDNA_intron_boundary i_start="57241" i_stop="57146" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="57145" e_stop="56958" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.758" acc_prob="0.963">
            <gDNA_intron_boundary i_start="56957" i_stop="56297" i_length="661"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="56296" e_stop="56143" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57579" stop="57242"/>
              <exon start="57145" stop="56958"/>
              <exon start="56296" stop="56143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57579" stop="57264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360835" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATACTATATCATCATCATGCCAAAATTACATGGAAGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGCGATCAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCTTGGTGACAAGCACTATTGGGCT : TCTGCGGGTTTCACAGGCATACATGGATATGCAATTGCTGGGATTTGGTTGTTAGTTGGTTTGGGTTTTGGAAGTTACATGATTTTTAAGTATTTTCATGCCAATTCAACTACTTCAATGATTGAACATTCGCCTTCGTATTATATTTTGATGTTCTCGCTGGTTGTTCTGTTTACAATTCTTGCCAT : AGTTGCAAGCTGCGTTGCTTTGGCTGCAAACAATGGTTTTGAACATAGAGTAGAAAGGCTTCGCCGAACAATTTTTGATGCTGGTGGTGATACATGTCAATCCATCAGAAGGGTAATAAAGGTTTTGCTAAGTATGCAAACTCTTTTAAGCCCT</gDNA_template>
            <first_frame> T  Q  E  *  P  K  V  S  Y  *  P  Q  A  I  L  T  L  M  I  K  S  R  N  E  F  F  S  S  F  I  P  L  L  L  F  M  F  C  L  K  N  I  Q  H  H  T  I  S  S  S  C  Q  N  Y  M  E  G  F  F  F  L  S  F  F  Y  *  F  P  L  I  *  L  P  R  N  L  L  Y  L  A  S  L  I  A  I  K  F  Q  K  D  L  I  L  S  D  I  L  S  H  I  M  G  V  I  I  L  V  T  S  T  I  G  L :   L  R  V  S  Q  A  Y  M  D  M  Q  L  L  G  F  G  C  *  L  V  W  V  L  E  V  T  *  F  L  S  I  F  M  P  I  Q  L  L  Q  *  L  N  I  R  L  R  I  I  F  *  C  S  R  W  L  F  C  L  Q  F  L  P   : *  L  Q  A  A  L  L  W  L  Q  T  M  V  L  N  I  E  *  K  G  F  A  E  Q  F  L  M  L  V  V  I  H  V  N  P  S  E  G  *  *  R  F  C  *  V  C  K  L  F  *  A   </first_frame>
            <second_frame>  H  K  N  N  Q  K  F  L  T  S  H  K  L  S  *  P  *  *  S  S  Q  G  M  N  F  S  L  L  L  Y  H  F  Y  F  L  C  F  A  S  K  I  F  N  I  I  L  Y  H  H  H  A  K  I  T  W  K  G  S  S  S  F  H  S  F  I  N  F  H  *  Y  N  C  P  E  I  S  C  I  W  L  H  *  S  R  S  N  F  K  K  T  *  S  S  Q  T  F  *  V  I  *  W  E  L  *  S  W  *  Q  A  L  L  G   : F  C  G  F  H  R  H  T  W  I  C  N  C  W  D  L  V  V  S  W  F  G  F  W  K  L  H  D  F  *  V  F  S  C  Q  F  N  Y  F  N  D  *  T  F  A  F  V  L  Y  F  D  V  L  A  G  C  S  V  Y  N  S  C  H  :  S  C  K  L  R  C  F  G  C  K  Q  W  F  *  T  *  S  R  K  A  S  P  N  N  F  *  C  W  W  *  Y  M  S  I  H  Q  K  G  N  K  G  F  A  K  Y  A  N  S  F  K  P  </second_frame>
            <third_frame>   T  R  I  T  K  S  F  L  L  A  T  S  Y  P  N  L  N  D  Q  V  K  E  *  I  F  L  F  F  Y  T  T  F  T  F  Y  V  L  P  Q  K  Y  S  T  S  Y  Y  I  I  I  M  P  K  L  H  G  R  V  L  L  P  F  I  L  L  L  I  S  T  N  I  I  A  Q  K  S  L  V  F  G  F  I  D  R  D  Q  I  S  K  R  P  D  P  L  R  H  F  K  S  Y  N  G  S  Y  N  L  G  D  K  H  Y  W  A  :  S  A  G  F  T  G  I  H  G  Y  A  I  A  G  I  W  L  L  V  G  L  G  F  G  S  Y  M  I  F  K  Y  F  H  A  N  S  T  T  S  M  I  E  H  S  P  S  Y  Y  I  L  M  F  S  L  V  V  L  F  T  I  L  A  I :   V  A  S  C  V  A  L  A  A  N  N  G  F  E  H  R  V  E  R  L  R  R  T  I  F  D  A  G  G  D  T  C  Q  S  I  R  R  V  I  K  V  L  L  S  M  Q  T  L  L  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57508" stop="57242"/>
                    <exon start="57145" stop="56958"/>
                    <exon start="56296" stop="56143"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLFFYTTFTFYVLPQKYSTSYYIIIMPKLHGRVLLPFILLLISTNIIAQKSLVFGFIDRDQISKRPDPLRHFKSYNGSYNLGDKHYWASAGFTGIHGYAIAGIWLLVGLGFGSYMIFKYFHANSTTSMIEHSPSYYILMFSLVVLFTILAIVASCVALAANNGFEHRVERLRRTIFDAGGDTCQSIRRVIKVLLSMQTLLSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="69660" PGL_stop="73892"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69660" e_stop="69819"/>
            <exon e_start="72161" e_stop="72242"/>
            <exon e_start="72366" e_stop="72398"/>
            <exon e_start="72507" e_stop="72628"/>
            <exon e_start="73028" e_stop="73189"/>
            <exon e_start="73509" e_stop="73892"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69660" e_stop="69819" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.879">
            <gDNA_intron_boundary i_start="69820" i_stop="72160" i_length="2341"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72161" e_stop="72242" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.974">
            <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72366" e_stop="72398" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72507" e_stop="72628" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.873" acc_prob="0.951">
            <gDNA_intron_boundary i_start="72629" i_stop="73027" i_length="399"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73028" e_stop="73189" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="73190" i_stop="73508" i_length="319"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73509" e_stop="73892" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69660" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69665" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280074" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69665" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69677" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69681" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73189"/>
              <exon start="73509" stop="73774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69724" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73189"/>
              <exon start="73509" stop="73773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69726" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73189"/>
              <exon start="73509" stop="73778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69726" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73189"/>
              <exon start="73509" stop="73771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69726" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73189"/>
              <exon start="73509" stop="73771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69726" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69727" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73189"/>
              <exon start="73509" stop="73529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69741" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73189"/>
              <exon start="73509" stop="73771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69741" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73189"/>
              <exon start="73509" stop="73853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69819"/>
              <exon start="72161" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72628"/>
              <exon start="73028" stop="73189"/>
              <exon start="73509" stop="73731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72508" stop="72628"/>
              <exon start="73028" stop="73189"/>
              <exon start="73509" stop="73556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73509" stop="73892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAATAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG : CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA : ACTGGTGGATACAGTGAAGACATGATACCAACT : GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT : TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT : GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTGCACGAGTTTGTGTGAAAGGAACGGATCTTTTTAAGTTTT</gDNA_template>
            <first_frame> T  N  K  G  G  R  G  K  I  P  R  G  Y  L  I  V  L  C  L  R  G  I  F  L  L  Y  T  D  I  Q  I  F  L  F  Y  D  S  S  H  Q  P  W  V  S  G  K  L  F  S  I  G  F  E   : A  S  S  L  S  R  K  W  S  F  H  *  *  D  C  K  M  Q  E  K  H  L  L  *  M  L  L  Q :   L  V  D  T  V  K  T  *  Y  Q  L :   W  D  L  T  C  A  K  *  R  K  E  M  S  L  *  N  C  G  T  L  E  V  N  P  D  S  A  V  C  G  S  V  T  V  V  L  F  L  L  *   : F  M  L  L  M  L  L  I  L  I  T  S  A  Y  Q  V  V  N  S  M  T  C  *  A  S  H  L  *  V  V  F  H  C  W  C  W  E  T  K  L  T  S  L  I  P  F  P  N  R  L  *  L  S  R   : W  D  *  N  Q  *  L  I  E  K  C  A  A  I  *  S  R  A  R  I  P  P  I  L  T  Q  S  L  I  G  L  L  S  T  R  N  Q  R  A  K  D  D  F  N  F  F  F  F  F  V  V  V  L  I  C  M  I  N  L  L  R  L  L  V  F  S  A  G  F  S  R  V  L  L  Y  C  K  L  S  Y  F  V  Y  *  V  S  C  Y  M  F  F  F  L  P  F  F  V  S  T  L  S  N  C  V  C  N  S  S  Y  T  F  Y  L  S  A  A  R  V  C  V  K  G  T  D  L  F  K  F  </first_frame>
            <second_frame>  Q  I  K  G  E  G  E  K  Y  R  E  G  I  *  L  C  C  V  *  E  G  S  F  F  F  I  L  I  F  R  S  F  S  F  T  I  L  R  I  S  H  G  Y  L  G  S  F  S  Q  L  A  S  K  :  P  L  L  *  A  G  N  G  A  F  I  D  R  I  A  K  C  R  K  N  I  S  C  K  C  Y  C   : N  W  W  I  Q  *  R  H  D  T  N   : C  G  I  *  H  A  Q  S  D  E  R  K  C  H  Y  K  I  V  G  P  W  R  S  T  Q  I  P  Q  Y  V  G  A  L  L  S  C  C  F  C  Y  S  :  L  C  C  *  C  C  *  S  *  *  P  Q  H  I  K  *  *  T  P  *  P  V  E  Q  A  I  S  E  W  Y  S  T  A  G  A  G  K  Q  N  *  Q  A  *  F  P  F  Q  T  G  F  D  *  A  D  :  G  I  E  I  N  N  *  *  R  S  V  L  L  Y  D  L  V  Q  E  F  H  Q  Y  *  L  S  H  *  L  A  C  *  A  L  E  I  K  E  L  K  M  T  L  T  F  S  F  F  L  *  W  C  *  S  V  *  *  I  C  *  G  Y  W  F  F  L  L  V  S  P  E  F  S  C  T  V  N  *  V  I  L  S  I  E  *  V  V  T  C  F  F  S  C  H  F  S  S  Q  L  S  L  I  V  F  A  I  P  L  I  L  F  T  C  L  L  H  E  F  V  *  K  E  R  I  F  L  S  F </second_frame>
            <third_frame>   K  *  R  G  K  G  K  N  T  E  R  V  F  N  C  V  V  F  E  R  D  L  S  S  L  Y  *  Y  S  D  L  S  L  L  R  F  F  A  S  A  M  G  I  W  E  A  F  L  N  W  L  R  S :   L  F  F  K  Q  E  M  E  L  S  L  I  G  L  Q  N  A  G  K  T  S  L  V  N  V  I  A  :  T  G  G  Y  S  E  D  M  I  P  T  :  V  G  F  N  M  R  K  V  T  K  G  N  V  T  I  K  L  W  D  L  G  G  Q  P  R  F  R  S  M  W  E  R  Y  C  R  A  V  S  A  I  V :   Y  V  V  D  A  A  D  P  D  N  L  S  I  S  S  S  E  L  H  D  L  L  S  K  P  S  L  S  G  I  P  L  L  V  L  G  N  K  I  D  K  P  D  S  L  S  K  Q  A  L  T  E  Q  M :   G  L  K  S  I  T  D  R  E  V  C  C  Y  M  I  S  C  K  N  S  T  N  I  D  S  V  I  D  W  L  V  K  H  S  K  S  K  S  *  R  *  L  *  L  F  L  F  F  C  S  G  A  D  L  Y  D  K  F  A  E  A  I  G  F  F  C  W  F  L  Q  S  S  L  V  L  *  I  K  L  F  C  L  L  S  E  L  L  H  V  F  F  L  A  I  F  R  L  N  S  L  *  L  C  L  Q  F  L  L  Y  F  L  L  V  C  C  T  S  L  C  E  R  N  G  S  F  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69743" stop="69819"/>
                    <exon start="72161" stop="72242"/>
                    <exon start="72366" stop="72398"/>
                    <exon start="72507" stop="72628"/>
                    <exon start="73028" stop="73189"/>
                    <exon start="73509" stop="73626"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSDLSLLRFFASAMGIWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISSSELHDLLSKPSLSGIPLLVLGNKIDKPDSLSKQALTEQMGLKSITDREVCCYMISCKNSTNIDSVIDWLVKHSKSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71959" e_stop="72242"/>
            <exon e_start="72366" e_stop="72398"/>
            <exon e_start="72507" e_stop="73000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71959" e_stop="72242" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.974">
            <gDNA_intron_boundary i_start="72243" i_stop="72365" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72366" e_stop="72398" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="72399" i_stop="72506" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="72507" e_stop="73000" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71959" stop="72134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71959" stop="72134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71960" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="73000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71960" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71960" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71960" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71966" stop="72242"/>
              <exon start="72366" stop="72398"/>
              <exon start="72507" stop="72786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA : ACTGGTGGATACAGTGAAGACATGATACCAACT : GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCT</gDNA_template>
            <first_frame> F  S  V  R  S  F  N  Y  G  V  A  S  H  Y  Y  F  R  V  W  N  L  T  V  E  T  Y  C  H  L  L  S  E  V  D  L  K  V  *  S  M  S  E  F  Q  Y  F  K  C  I  C  L  L  W  L  L  L  N  D  S  S  C  Q  N  L  L  V  P  A  S  S  L  S  R  K  W  S  F  H  *  *  D  C  K  M  Q  E  K  H  L  L  *  M  L  L  Q :   L  V  D  T  V  K  T  *  Y  Q  L :   W  D  L  T  C  A  K  *  R  K  E  M  S  L  *  N  C  G  T  L  E  V  N  P  D  S  A  V  C  G  S  V  T  V  V  L  F  L  L  *  C  M  H  L  L  S  S  L  Y  Y  C  I  C  F  Y  R  *  M  *  D  E  S  I  Y  T  L  I  *  K  I  T  H  D  T  L  I  T  N  *  D  E  S  S  P  W  F  I  N  E  Q  F  Y  *  I  S  W  F  A  C  P  I  W  C  L  T  D  L  Y  F  Y  A  F  D  R  W  N  S  *  S  *  S  F  M  C  I  *  R  N  D  A  K  Y  V  A  P  L  R  V  L  T  N  F  K  D  L  N  C  N  L  I  Y  M  N  S  Y  F  I  A  S  S  *  F  G  F  </first_frame>
            <second_frame>  L  V  *  G  L  S  I  M  V  L  R  L  I  I  T  S  E  F  G  T  *  Q  L  K  L  I  V  I  F  F  L  R  *  T  *  K  Y  K  A  C  Q  N  S  N  I  L  N  A  Y  V  S  F  G  S  Y  *  M  I  P  H  V  K  T  C  L  F  Q  P  L  L  *  A  G  N  G  A  F  I  D  R  I  A  K  C  R  K  N  I  S  C  K  C  Y  C   : N  W  W  I  Q  *  R  H  D  T  N   : C  G  I  *  H  A  Q  S  D  E  R  K  C  H  Y  K  I  V  G  P  W  R  S  T  Q  I  P  Q  Y  V  G  A  L  L  S  C  C  F  C  Y  S  V  C  I  S  S  P  A  Y  I  T  V  F  A  F  T  D  R  C  E  M  N  P  F  I  H  S  F  R  R  *  H  M  I  L  L  L  R  I  E  M  N  L  L  H  G  L  L  M  N  S  F  I  E  S  H  G  L  P  V  L  F  G  A  *  Q  I  Y  I  F  M  P  S  I  G  G  I  L  D  L  D  H  L  C  V  F  K  G  M  M  L  N  M  L  L  P  *  E  F  *  Q  I  L  R  T  S  T  V  I  *  Y  T  *  I  L  I  L  *  P  R  A  N  L  V  S </second_frame>
            <third_frame>   *  C  K  V  F  Q  L  W  C  C  V  S  L  L  L  Q  S  L  E  L  D  S  *  N  L  L  S  S  S  F  *  G  R  L  K  S  I  K  H  V  R  I  P  I  F  *  M  H  M  S  P  L  A  L  I  K  *  F  L  M  S  K  L  A  C  S  S  L  F  F  K  Q  E  M  E  L  S  L  I  G  L  Q  N  A  G  K  T  S  L  V  N  V  I  A  :  T  G  G  Y  S  E  D  M  I  P  T  :  V  G  F  N  M  R  K  V  T  K  G  N  V  T  I  K  L  W  D  L  G  G  Q  P  R  F  R  S  M  W  E  R  Y  C  R  A  V  S  A  I  V  Y  A  S  P  L  Q  L  I  L  L  Y  L  L  L  Q  I  D  V  R  *  I  H  L  Y  T  H  L  E  D  N  T  *  Y  S  Y  Y  E  L  R  *  I  F  S  M  V  Y  *  *  T  V  L  L  N  L  M  V  C  L  S  Y  L  V  L  D  R  F  I  F  L  C  L  R  *  V  E  F  L  I  L  I  I  Y  V  Y  L  K  E  *  C  *  I  C  C  S  L  K  S  F  N  K  F  *  G  P  Q  L  *  F  D  I  H  E  F  L  F  Y  S  L  E  L  I  W  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72132" stop="72242"/>
                    <exon start="72366" stop="72398"/>
                    <exon start="72507" stop="72689"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLMSKLACSSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYASPLQLILLYLLLQIDVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71555" e_stop="71931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71555" e_stop="71931" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71555" stop="71931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGC</gDNA_template>
            <first_frame> Q  I  W  L  D  I  F  H  L  N  P  C  S  F  *  L  F  *  V  S  C  K  K  V  N  C  V  P  S  E  S  L  L  *  T  D  S  L  P  V  Q  *  L  T  T  S  Y  Q  K  N  Q  L  Y  I  C  G  W  N  T  F  *  Y  F  *  M  D  *  T  L  T  D  E  S  E  T  I  D  A  S  P  *  P  F  I  I  Y  K  T  F  S  *  G  S  T  G  *  F  Q  K  *  R  P  K  I  T  Y  I  *  Q  I  L  Q  C  H  H  P  L  F  S  L  V  S  S  H  H   </first_frame>
            <second_frame>  R  F  G  W  T  F  S  T  *  I  L  V  A  F  D  F  S  K  F  L  A  K  K  *  I  V  F  H  R  S  H  C  C  R  Q  T  L  C  L  F  N  D  *  P  P  R  I  R  K  I  N  S  I  Y  V  V  G  T  P  F  N  I  F  E  W  T  R  H  *  L  M  K  V  K  P  L  M  L  P  L  D  L  S  S  Y  T  K  L  F  P  E  V  Q  L  G  D  S  R  N  D  D  Q  K  *  L  I  F  D  R  F  Y  N  V  T  I  H  Y  S  V  L  C  H  P  T  M  </second_frame>
            <third_frame>   D  L  A  G  H  F  P  P  K  S  L  *  L  L  T  F  L  S  F  L  Q  K  S  E  L  C  S  I  G  V  I  V  V  D  R  L  F  A  C  S  M  I  D  H  L  V  S  E  K  S  T  L  Y  M  W  L  E  H  L  L  I  F  L  N  G  L  D  T  D  *  *  K  *  N  H  *  C  F  P  L  T  F  H  H  I  Q  N  F  F  L  R  F  N  W  V  I  P  E  M  T  T  K  N  N  L  Y  L  T  D  F  T  M  S  P  S  I  I  Q  S  C  V  I  P  P  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLe0132D01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="88231" PGL_stop="83710"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88231" e_stop="88071"/>
            <exon e_start="87540" e_stop="86461"/>
            <exon e_start="84571" e_stop="84404"/>
            <exon e_start="83792" e_stop="83710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.969" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="88231" e_stop="88071" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.969">
            <gDNA_intron_boundary i_start="88070" i_stop="87541" i_length="530"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87540" e_stop="86461" e_length="1080"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="86460" i_stop="84572" i_length="1889"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84571" e_stop="84404" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="84403" i_stop="83793" i_length="611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83792" e_stop="83710" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88231" stop="88071"/>
              <exon start="87540" stop="87200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88177" stop="88071"/>
              <exon start="87540" stop="87317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87415" stop="86816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86983" stop="86461"/>
              <exon start="84571" stop="84404"/>
              <exon start="83792" stop="83716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86667" stop="86461"/>
              <exon start="84571" stop="84404"/>
              <exon start="83792" stop="83710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGGTGCGTTTGGCGGCAACTATATAAAACAATTTGGGGAGGCTCAATTATCATCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG : GTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTTGTTGCTTCTTATAGTTCCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG : ATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAG : GGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCATGAAAA</gDNA_template>
            <first_frame> R  G  A  F  G  G  N  Y  I  K  Q  F  G  E  A  Q  L  S  S  R  V  N  F  G  F  *  G  F  K  F  D  H  S  P  L  S  T  K  H  D  G  L  T  S  V  E  R  R  F  I  C  S  S  W :   Y  S  S  G  *  A  Y  R  G  L  S  F  L  Q  *  T  R  K  G  N  V  V  *  Q  P  W  A  T  K  T  N  L  L  A  V  L  V  M  M  D  I  L  K  A  R  F  L  K  T  H  L  R  K  K  *  T  L  R  Q  K  V  K  K  L  A  L  I  G  S  A  S  Y  L  T  L  *  L  Y  K  F  S  L  Y  C  P  Y  K  M  L  S  E  H  L  F  S  L  N  V  G  N  T  P  G  L  L  *  T  T  L  F  L  T  T  E  I  P  I  G  P  I  E  R  M  *  L  I  S  S  F  P  S  Q  T  M  Y  Y  L  S  F  A  A  L  I  L  K  S  S  V  Y  I  S  D  F  A  L  L  L  L  I  V  P  K  L  T  S  G  L  K  L  F  *  R  K  K  W  R  I  L  T  W  K  Y  G  I  M  I  K  A  P  M  S  C  H  K  F  S  A  T  T  H  P  L  *  N  L  I  A  S  F  A  E  Y  Q  K  N  V  Y  *  T  G  H  P  *  R  V  *  H  *  P  I  C  F  F  G  T  N  M  L  N  K  *  *  Q  I  V  L  S  W  N  C  *  S  Y  V  S  F  V  V  F  I  A  Y  I  *  L  L  Q  N  V  G  V  C  N  *  L  I  M  P  I  L  M  E  I  G  V  H  L  A  V  I  V  P  S  K  *  L  P  H  I  F  N  I  *  R  F  R  G  I  L  I  M  W  K  *  D  L  G  T  F  H  L  *  S  L  L  I  L  L  S  L  L  I  L  Y  M  T  I  P  W  N  F  S  W  Q  V  Y  V  V  L  M  S  *  *  S  H  A  G  L  S  R :   *  F  M  W  R  *  *  K  R  R  K  M  F  H  F  *  C  G  S  A  N  G  *  R  *  I  L  G  F  Q  K  M  P  F  S  A  *  V  F  S  *  S  Q  L  L  I  W  R  I  *  R  Y  F  M  K  R :   E  I  S  L  S  G  M  N  T  W  K  K  K  C  L  I  G  *  E  T  N  P  S  P  C  M  K  </first_frame>
            <second_frame>  G  V  R  L  A  A  T  I  *  N  N  L  G  R  L  N  Y  H  H  E  *  I  L  G  S  R  V  S  N  L  I  I  H  H  C  R  R  N  T  M  V  *  L  L  L  R  G  D  L  F  V  L  P   : G  T  A  V  V  K  H  I  E  V  S  H  S  C  N  E  L  G  K  E  M  *  C  D  N  H  G  R  P  R  P  I  S  *  Q  F  W  *  *  W  T  F  *  R  P  D  S  *  K  P  T  S  G  K  S  E  H  *  D  R  K  *  R  N  W  H  *  L  D  Q  R  A  T  *  R  S  N  C  T  N  S  L  S  I  A  H  T  R  C  F  Q  N  I  C  S  L  *  T  L  A  I  P  L  D  F  Y  R  Q  P  Y  F  *  Q  P  K  Y  Q  L  V  Q  *  R  E  C  D  *  *  V  H  F  L  H  R  Q  C  T  T  S  P  L  L  L  *  Y  *  K  V  L  S  I  F  P  I  L  P  C  C  F  L  *  F  Q  N  *  Q  V  A  *  N  C  F  E  E  K  S  G  G  S  *  P  G  N  M  V  L  *  S  K  P  L  C  L  A  T  S  S  L  Q  Q  L  I  H  C  K  I  *  L  R  V  L  Q  N  T  R  R  M  C  T  K  L  D  I  P  E  E  F  D  T  N  L  F  V  S  S  G  R  T  C  *  T  N  S  N  K  L  S  S  V  G  I  V  E  A  M  *  V  L  W  F  S  S  L  T  Y  N  F  S  K  M  *  E  S  A  I  D  *  S  C  P  S  *  W  R  L  G  S  I  W  R  *  L  F  L  R  S  S  C  P  I  Y  S  T  S  K  D  F  G  A  F  *  *  C  G  N  K  T  W  G  P  F  I  F  S  H  C  *  S  Y  F  L  C  *  Y  C  I  *  Q  Y  R  G  T  S  L  G  K  C  T  L  C  *  *  A  N  D  P  M  L  V  Y  R   : D  D  L  C  G  G  D  R  K  E  E  R  C  S  I  S  D  A  E  V  Q  T  V  D  D  K  F  L  D  F  K  K  C  H  S  R  H  R  C  S  L  K  V  N  S  L  S  G  E  F  D  D  T  S  *  R   : G  R  F  L  C  L  G  *  I  L  G  R  R  S  V  *  L  V  R  R  Q  I  P  L  L  A  *  K </second_frame>
            <third_frame>   G  C  V  W  R  Q  L  Y  K  T  I  W  G  G  S  I  I  I  T  S  K  F  W  V  L  G  F  Q  I  *  S  F  T  I  V  D  E  T  R  W  F  N  F  C  *  E  A  I  Y  L  F  F  L  :  V  Q  Q  W  L  S  I  *  R  S  L  I  L  A  M  N  S  E  R  K  C  S  V  T  T  M  G  D  Q  D  Q  S  P  S  S  S  G  D  D  G  H  S  K  G  Q  I  L  E  N  P  P  Q  E  K  V  N  I  E  T  E  S  E  E  T  G  I  D  W  I  S  E  L  P  D  A  L  I  V  Q  I  L  S  L  L  P  I  Q  D  A  F  R  T  S  V  L  S  K  R  W  Q  Y  P  W  T  S  I  D  N  L  I  F  D  N  R  N  T  N  W  S  N  R  E  N  V  I  N  K  F  I  S  F  T  D  N  V  L  P  L  L  C  C  S  N  I  K  K  F  C  L  Y  F  R  F  C  L  V  A  S  Y  S  S  K  I  D  K  W  L  E  I  V  L  K  K  K  V  E  D  L  D  L  E  I  W  Y  Y  D  Q  S  P  Y  V  L  P  Q  V  L  C  N  N  S  S  I  V  K  F  N  C  E  F  C  R  I  P  E  E  C  V  L  N  W  T  S  L  K  S  L  T  L  T  Y  L  F  L  R  D  E  H  V  E  Q  I  V  T  N  C  P  Q  L  E  L  L  K  L  C  E  F  C  G  F  H  R  L  H  I  T  S  P  K  C  R  S  L  Q  L  I  D  H  A  H  P  D  G  D  W  G  P  F  G  G  D  C  S  F  E  V  V  A  P  Y  I  Q  H  L  K  I  S  G  H  F  D  N  V  E  I  R  L  G  D  L  S  S  L  V  I  A  D  L  T  F  S  V  D  I  V  Y  D  N  T  V  E  L  L  L  A  S  V  R  C  A  N  E  L  M  I  P  C  W  F  I  E  :  M  I  Y  V  A  V  I  E  K  K  K  D  V  P  F  L  M  R  K  C  K  R  L  T  I  N  S  W  I  S  K  N  A  I  L  G  I  G  V  L  L  K  S  T  P  Y  L  E  N  L  T  I  L  H  E  E  :  G  D  F  F  V  W  D  E  Y  L  E  E  E  V  F  D  W  L  G  D  K  S  L  S  L  H  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87516" stop="86461"/>
                    <exon start="84571" stop="84404"/>
                    <exon start="83792" stop="83712"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1305</number_coding_nucleotides>
                  <number_encoded_amino_acids>435</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSLILAMNSERKCSVTTMGDQDQSPSSSGDDGHSKGQILENPPQEKVNIETESEETGIDWISELPDALIVQILSLLPIQDAFRTSVLSKRWQYPWTSIDNLIFDNRNTNWSNRENVINKFISFTDNVLPLLCCSNIKKFCLYFRFCLVASYSSKIDKWLEIVLKKKVEDLDLEIWYYDQSPYVLPQVLCNNSSIVKFNCEFCRIPEECVLNWTSLKSLTLTYLFLRDEHVEQIVTNCPQLELLKLCEFCGFHRLHITSPKCRSLQLIDHAHPDGDWGPFGGDCSFEVVAPYIQHLKISGHFDNVEIRLGDLSSLVIADLTFSVDIVYDNTVELLLASVRCANELMIPCWFIEMIYVAVIEKKKDVPFLMRKCKRLTINSWISKNAILGIGVLLKSTPYLENLTILHEEGDFFVWDEYLEEEVFDWLGDKSLSLHE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="90702" PGL_stop="95372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90702" e_stop="90919"/>
            <exon e_start="91827" e_stop="91915"/>
            <exon e_start="93608" e_stop="93737"/>
            <exon e_start="94507" e_stop="94536"/>
            <exon e_start="95017" e_stop="95372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="90702" e_stop="90919" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="90920" i_stop="91826" i_length="907"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91827" e_stop="91915" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="91916" i_stop="93607" i_length="1692"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93608" e_stop="93737" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.980">
            <gDNA_intron_boundary i_start="93738" i_stop="94506" i_length="769"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94507" e_stop="94536" e_length="30"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94537" i_stop="95016" i_length="480"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95017" e_stop="95372" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90702" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90707" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90708" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90709" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90709" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90712" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90714" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90724" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90727" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90727" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90727" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90733" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90737" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90737" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90738" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90740" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90740" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90740" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90741" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90742" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90742" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90742" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90742" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90743" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90744" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90745" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90746" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90747" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90747" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90748" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90749" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90751" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90759" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90760" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90770" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90770" stop="90919"/>
              <exon start="91827" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91873" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91890" stop="91915"/>
              <exon start="93608" stop="93737"/>
              <exon start="94507" stop="94536"/>
              <exon start="95017" stop="95372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAAGTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG : GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA : ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG : GTGAAGAAACGACACACACCATTGTTAAAG : ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTACGAACTGTGATTGT</gDNA_template>
            <first_frame> A  K  *  Y  L  A  S  S  L  R  P  D  S  I  I  S  G  K  W  L  A  L  S  D  D  *  R  R  I  P  L  K  P  P  G  D  L  L  *  R  R  Y  V  D  N  L  R  Q  K  R  W  S  K  S  S  P  E  R  S  V  W  S  L  V  F  Q  M  N  I  F  V  E  G :   L  *  F  S  L  L  L  G  L  L  V  N  K  A  L  E  K  L  A  D  G  K  S  I  S  C  L  P  R   : N  G  R  I  H  *  W  G  G  H  P  Q  G  I  H  M  P  M  L  V  I  Q  L  L  V  L  R  V  K  K  L  Q  K  H  S  L  K  S  M  V  G  N  I  R :   *  R  N  D  T  H  H  C  *  R :   S  S  H  M  R  T  T  L  S  G  R  D  L  P  R  Q  Q  N  N  L  F  S  T  S  I  Q  V  L  E  V  L  V  D  V  L  P  N  A  L  H  S  V  F  F  F  F  L  P  S  L  K  L  G  R  S  P  S  *  R  I  *  *  I  K  L  M  K  I  H  K  Y  M  Q  C  L  K  T  F  V  K  Q  F  P  G  V  S  V  L  V  G  H  C  V  V  S  K  H  *  *  P  C  F  S  L  Q  K  K  L  A  C  Q  N  T  Y  E  L  *  L  </first_frame>
            <second_frame>  Q  S  N  I  W  L  H  H  F  G  R  I  L  S  S  Q  A  N  G  *  L  S  P  T  T  S  D  A  F  L  S  S  R  L  A  I  F  C  D  A  A  M  *  T  I  C  V  R  S  V  G  R  N  Q  A  R  R  D  R  Y  G  L  W  Y  S  R  *  T  S  S  *  K   : G  C  D  F  L  S  C  S  D  C  *  S  T  R  L  W  K  S  W  Q  M  E  N  Q  F  H  V  Y  P  E  :  M  G  E  S  I  D  G  V  D  I  H  R  G  S  I  C  Q  C  W  *  F  S  S  *  F  *  E  *  R  S  C  K  S  I  R  *  K  A  W  L  G  I  Y   : G  E  E  T  T  H  T  I  V  K   : D  Q  V  I  C  G  Q  L  *  V  E  G  T  S  Q  G  S  R  I  I  Y  F  L  L  Q  F  K  Y  L  R  C  L  W  M  F  Y  L  M  P  C  I  L  F  S  F  F  F  Y  L  L  *  S  W  A  D  L  L  L  E  G  F  N  K  S  N  L  *  K  S  T  S  T  C  N  V  L  K  P  L  *  S  N  F  R  V  F  L  Y  L  W  D  I  V  S  C  Q  N  T  S  S  L  V  F  L  S  K  R  N  *  R  V  K  I  L  T  N  C  D  C </second_frame>
            <third_frame>   K  V  I  S  G  F  I  T  S  A  G  F  Y  H  L  R  Q  M  A  S  S  L  R  R  L  A  T  H  S  S  Q  A  A  W  R  S  S  V  T  P  L  C  R  Q  F  A  S  E  A  L  V  E  I  K  P  G  E  I  G  M  V  S  G  I  P  D  E  H  L  R  R  R  :  V  V  I  F  S  P  A  R  T  A  S  Q  Q  G  S  G  K  V  G  R  W  K  I  N  F  M  S  T  Q  K :   W  E  N  P  L  M  G  W  T  S  T  G  D  P  Y  A  N  V  G  D  S  A  L  S  F  E  S  E  E  A  A  K  A  F  A  E  K  H  G  W  E  Y  T  :  V  K  K  R  H  T  P  L  L  K  :  I  K  S  Y  A  D  N  F  K  W  K  G  P  P  K  A  A  E  *  F  I  F  Y  F  N  S  S  T  *  G  A  C  G  C  S  T  *  C  P  A  F  C  F  L  F  F  F  T  F  S  K  V  G  Q  I  S  F  L  K  D  L  I  N  Q  T  Y  E  N  P  Q  V  H  A  M  S  *  N  L  C  E  A  I  S  G  C  F  C  T  C  G  T  L  C  R  V  K  T  L  V  A  L  F  F  S  P  K  E  I  S  V  S  K  Y  L  R  T  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLe0132D01.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90704" stop="90919"/>
                    <exon start="91827" stop="91915"/>
                    <exon start="93608" stop="93737"/>
                    <exon start="94507" stop="94536"/>
                    <exon start="95017" stop="95073"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVISGFITSAGFYHLRQMASSLRRLATHSSQAAWRSSVTPLCRQFASEALVEIKPGEIGMVSGIPDEHLRRRVVIFSPARTASQQGSGKVGRWKINFMSTQKWENPLMGWTSTGDPYANVGDSALSFESEEAAKAFAEKHGWEYTVKKRHTPLLKIKSYADNFKWKGPPKAAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 286 chains have been computed
$ 
$ memory statistics:
$ 347000 bytes spliced alignments in total
$ 167 spliced alignments have been stored
$ 2077 bytes was the average size of a spliced alignment
$ 28112 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1653 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 300 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:12:40
-->
