<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2006-11-17 22:01:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E353265" ref_strand="+" ref_description="SGN-E353265 	[cTOS-14-J6]">
      <seq>ctgttttgaatctgatatactacctgctggtagaaattcttccttcagctcttgtgctgtacatcctgcgaaaactgcctccaaaaagagtgtctgcacaataccacccaatcagttagctgcagcagaattttatcgttagtgatacacgttcccatggtttctgttgcagaagctaactggagttgttcaggaaaagtgaaactgcaaaaggatattcggttgcaataattctgcggaaaggcaaagattcaacgcttttttggcagttgttaaaacagaggttaagctgttttgcttacattatattgtttctgtggntttagtgtgaagcatgagacaaataagtgttccccacgtctgtgaaaaatcctagtcatgatgtaatgacgcagagggtaaatctcagtatcgccattgtactggcatgttgtaactatgatgttctggatctcctttactgcaatgactgatgtcctttgtttggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="+" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="1" stop="844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82" g_stop="544" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="489" r_length="463" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="+" ref_id="SGN-E353265" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82" e_stop="544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTAGAAATTCTTCCTTCAGCTCTTGTGCTGTACATCCTGCGAAAACTGCCTCCAAAAAGAGTGTCTGCACAATACCACCCAATCAGTTAGCTGCAGCAGAATTTTATCGTTAGTGATACACGTTCCCATGGTTTCTGTTGCAGAAGCTAACTGGAGTTGTTCAGGAAAAGTGAAACTGCAAAAGGATATTCGGTTGCAATAATTCTGCGGAAAGGCAAAGATTCAACGCTTTTTTGGCAGTTGTTAAAACAGAGGTTAAGCTGTTTTGCTTACATTATATTGTTTCTGTGGTTTTAGTGTGAAGCATGAGACAAATAAGTGTTCCCCACGTCTGTGAAAAATCCTAGTCATGATGTAATGACGCAGAGGGTAAATCTCAGTATCGCCATTGTACTGGCATGTTGTAACTATGATGTTCTGGATCTCCTTTACTGCAATGACTGATGTCCTTTGTTTGGTC</genome_strand>
        <mrna_strand>CTGGTAGAAATTCTTCCTTCAGCTCTTGTGCTGTACATCCTGCGAAAACTGCCTCCAAAAAGAGTGTCTGCACAATACCACCCAATCAGTTAGCTGCAGCAGAATTTTATCGTTAGTGATACACGTTCCCATGGTTTCTGTTGCAGAAGCTAACTGGAGTTGTTCAGGAAAAGTGAAACTGCAAAAGGATATTCGGTTGCAATAATTCTGCGGAAAGGCAAAGATTCAACGCTTTTTTGGCAGTTGTTAAAACAGAGGTTAAGCTGTTTTGCTTACATTATATTGTTTCTGTGGNTTTAGTGTGAAGCATGAGACAAATAAGTGTTCCCCACGTCTGTGAAAAATCCTAGTCATGATGTAATGACGCAGAGGGTAAATCTCAGTATCGCCATTGTACTGGCATGTTGTAACTATGATGTTCTGGATCTCCTTTACTGCAATGACTGATGTCCTTTGTTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E200967" ref_strand="+" ref_description="SGN-E200967 	[cLEC-5-I11]">
      <seq>caaaggacatcagtcattgcagtaaaggagatccagaacatcatagttacaacatgccagtacaatggcgatactgagatttaccctctgcgtcattacatcatgactaggatttttcacagacgtggggaacacttatttgtctcatgcttcacactaaaaccacagaaacaatataatgtaagcaaaacagcttaacctctgttttaacaactgccaaaaaagcgttgaatctttgcctttccgcagaattattgcaaccgaatatccttttgcagtttcacttttcctgaacaactccagttagcttctgcaacagaaaccatgggaacgtgtatcactaacgataaaattctgctgcagctaactgattgggtggtattgtgcagacactctttttggaggcagttttcgcaggatgtacagcacaagagctgaaggaagaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="837" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="537" g_stop="89" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E200967" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="537" e_stop="89"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGACATCAGTCATTGCAGTAAAGGAGATCCAGAACATCATAGTTACAACATGCCAGTACAATGGCGATACTGAGATTTACCCTCTGCGTCATTACATCATGACTAGGATTTTTCACAGACGTGGGGAACACTTATTTGTCTCATGCTTCACACTAAAACCACAGAAACAATATAATGTAAGCAAAACAGCTTAACCTCTGTTTTAACAACTGCCAAAAAAGCGTTGAATCTTTGCCTTTCCGCAGAATTATTGCAACCGAATATCCTTTTGCAGTTTCACTTTTCCTGAACAACTCCAGTTAGCTTCTGCAACAGAAACCATGGGAACGTGTATCACTAACGATAAAATTCTGCTGCAGCTAACTGATTGGGTGGTATTGTGCAGACACTCTTTTTGGAGGCAGTTTTCGCAGGATGTACAGCACAAGAGCTGAAGGAAGAATTT</genome_strand>
        <mrna_strand>CAAAGGACATCAGTCATTGCAGTAAAGGAGATCCAGAACATCATAGTTACAACATGCCAGTACAATGGCGATACTGAGATTTACCCTCTGCGTCATTACATCATGACTAGGATTTTTCACAGACGTGGGGAACACTTATTTGTCTCATGCTTCACACTAAAACCACAGAAACAATATAATGTAAGCAAAACAGCTTAACCTCTGTTTTAACAACTGCCAAAAAAGCGTTGAATCTTTGCCTTTCCGCAGAATTATTGCAACCGAATATCCTTTTGCAGTTTCACTTTTCCTGAACAACTCCAGTTAGCTTCTGCAACAGAAACCATGGGAACGTGTATCACTAACGATAAAATTCTGCTGCAGCTAACTGATTGGGTGGTATTGTGCAGACACTCTTTTTGGAGGCAGTTTTCGCAGGATGTACAGCACAAGAGCTGAAGGAAGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E372563" ref_strand="+" ref_description="SGN-E372563 	[TUS-31-E9]">
      <seq>ttttttttttgaggattgttgtgtaacctcaattatatacataaaaataaagctgttaaagaacaatgcatgcagcaaaaatgtttcggagaactgcaaaatgaatgttttctatcatcagttcaccatattttgtatgacgaatcagttttgcacccaaagttgtgtaattgttgccgttaattggaaataactccgtgccccaagggcttcgagtgagtagtacaagcagcatcgtgtgatatgttgattagcgagtaaacctgttaccgacccggattttgaaccatctgtaactgaatctttagaattcctcggttctaagagtaaaattactagaacaaactgaccaaacaaaggacatcagtcattgcagtaaaggagatccagaacatcatagttacaacatgccagtacaatggcgatactgagatttaccctctgcgtcattacatcatgactaggatttttcacagacgtggggaacacttatttgtctcatgcttcacactaaaaccacagaaacaatataatgtaagcaaaacagcttaacctctgttttaacaactgccaaaaaagcgttgaatctttgcctttccgcagaattattgcaaccgaatatccttttgcagtttcacttttcctgaacaactccagttagcttctgcaacagaaaccatgggaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="1187" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="891" g_stop="205" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E372563" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="891" e_stop="205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTTTAATGAGGATTGTTGTGTAACCTCAATTATATACATAAAAATAAAGCTGTTAAAGAACAATGCATGCAGCAAAAATGTTTCGGAGAACTGCAAAATGAATGTTTTCTATCATCAGTTCACCATATTTTGTATGACGAATCAGTTTTGCACCCAAAGTTGTGTAATTGTTGCCGTTAATTGGAAATAACTCCGTGCCCCAAGGGCTTCGAGTGAGTAGTACAAGCAGCATCGTGTGATATGTTGATTAGCGAGTAAACCTGTTACCGACCCGGATTTTGAACCATCTGTAACTGAATCTTTAGAATTCCTCGGTTCTAAGAGTAAAATTACTAGAACAAACTGACCAAACAAAGGACATCAGTCATTGCAGTAAAGGAGATCCAGAACATCATAGTTACAACATGCCAGTACAATGGCGATACTGAGATTTACCCTCTGCGTCATTACATCATGACTAGGATTTTTCACAGACGTGGGGAACACTTATTTGTCTCATGCTTCACACTAAAACCACAGAAACAATATAATGTAAGCAAAACAGCTTAACCTCTGTTTTAACAACTGCCAAAAAAGCGTTGAATCTTTGCCTTTCCGCAGAATTATTGCAACCGAATATCCTTTTGCAGTTTCACTTTTCCTGAACAACTCCAGTTAGCTTCTGCAACAGAAACCATGGGAACG</genome_strand>
        <mrna_strand>TTTTTTTTTTGAGGATTGTTGTGTAACCTCAATTATATACATAAAAATAAAGCTGTTAAAGAACAATGCATGCAGCAAAAATGTTTCGGAGAACTGCAAAATGAATGTTTTCTATCATCAGTTCACCATATTTTGTATGACGAATCAGTTTTGCACCCAAAGTTGTGTAATTGTTGCCGTTAATTGGAAATAACTCCGTGCCCCAAGGGCTTCGAGTGAGTAGTACAAGCAGCATCGTGTGATATGTTGATTAGCGAGTAAACCTGTTACCGACCCGGATTTTGAACCATCTGTAACTGAATCTTTAGAATTCCTCGGTTCTAAGAGTAAAATTACTAGAACAAACTGACCAAACAAAGGACATCAGTCATTGCAGTAAAGGAGATCCAGAACATCATAGTTACAACATGCCAGTACAATGGCGATACTGAGATTTACCCTCTGCGTCATTACATCATGACTAGGATTTTTCACAGACGTGGGGAACACTTATTTGTCTCATGCTTCACACTAAAACCACAGAAACAATATAATGTAAGCAAAACAGCTTAACCTCTGTTTTAACAACTGCCAAAAAAGCGTTGAATCTTTGCCTTTCCGCAGAATTATTGCAACCGAATATCCTTTTGCAGTTTCACTTTTCCTGAACAACTCCAGTTAGCTTCTGCAACAGAAACCATGGGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E369435" ref_strand="-" ref_description="SGN-E369435 	[TUS-23-M9]">
      <seq>gtttcacatgtttttcctagctcggtactgcaagcttctagaagagaactccttcaggggaaggacggcagatttcttctacatgctcttgtttggtgccactgttttaacaggaattgttcttgtcggggggatgataccttatgtctcagagtcatttgcaaggatcatattcctgagcaattcattgacttttatgatggtttatgtatggagcaagcaaaatccatttatccacatgagctttttgggtctgtttactttcaccgcagcttacctcccatgggttcttttgggcttctctgtgctagttggcgccagtgcttgggtggatctactgggaatgattgcaggccatgcttattatttcctagaagacgtctatccgcgaatgactggtcgtagacccctgaaaactccagcagttatcaaagcattgtttgctgatgagccggtagtggtggctcgccctgctaatgttcgcttcgctgctcctcctgttgatgaagttccaccaaatcaatgagagaattttataagtaaaccagtggctctgtcttcagtttctgtaaattgaccgtagatatttggttggaggaaatcagggttggtgttgttgatgatgattgtgctagttattaatgctttttgtaatttagatctggaactggagaagtgctgtctggtagagaaaattcgcctatatgaagtgttttttctctgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="6644" stop="1059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6344" g_stop="6143" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6142" i_stop="6048" i_length="95">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6047" g_stop="5964" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="286" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5963" i_stop="2803" i_length="3161">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2802" g_stop="2749" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="340" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2748" i_stop="1748" i_length="1001">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1747" g_stop="1354" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="734" r_length="394" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E369435" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369435" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6344" e_stop="6143"/>
          <exon e_start="6047" e_stop="5964"/>
          <exon e_start="2802" e_stop="2749"/>
          <exon e_start="1747" e_stop="1354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATGGTTAGCTCCTCTGCAGTATAACTCCATTTTTGACTCGGCTTTGTTTTATGTCTTAGTCTTTCTTTTTTCATCGTTCTGCTTCCTTCTATGTGTAGGTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGGGTTAGTGTTTATTACTTAATCCATCATACTTTGCTTCACAAATCTTTAGCTTTTAAATTTAATAGCTGCCTCACCTGTGGTTTGTCCCCTTGCATCTTTGTGTTTCTTCTGCTAGATATGAAATTATCAATTTGCCATTTCTTTAATGAATCCTGAAGTAGCAGGTGTTTTATGACACTTGCTCCTGGTGTTTCCATACTAGAGCTGAGCTGCTAAAGCCACTCTAAAAGTATATGCTGCGACCAGACACATTGCAGAAACCACTTGGTTCCTTTTTTTCGTTCGATTTTTTCAGAAAGAGCAGTACTTCAAAGCTCATGCCTTGTGTATTTGGTTTTCCTTATTTATATGTTTTAAGGAAGATTTGGTTTAGTGCATTTTACAGATGAAAATGCACATATAATAAACAAGGAAAATCTCTTGGGCCAATTTGACTTGGCTTAAATAAAGTGCTTTTTAAAAGTATTTTTCAAAAAGTCATACTTCATAATTTTTAAGTTAAAAAATGAAAGTAGTATCCAACTTTTAAGCCAAGTCAGAACACCCTCTTGTACTCTCTGTGGTACAGAGGACTTGTGTTGAAATGGTCTACTTATGCTAGCATGGTCAATGATGCTTTTGACGTGAGTTGCTTGGAAATAGAACTCTGGTCAAAATCTGCCAGATATCTTTTCTGCTTTATTGTGGGTTCCATGACCGCAGCTGGTTTGGATTTGACTATGCCTCTCACAATAAGACAGTGGGCTTAAAACATGGCAAGTAACTTTGTTAAACAAATAATGTTTGATAGCAGACAATTAATTTGAAAAAATGGTAAATTTATAAAGAGTACTGGTTTAAGTCTTCAAAGAAAATAATATTACCTTCTAAAAAAAAACCTCTTCAAAGAAAATATGTAGGGGAAAGGAATTCGTACATGTGTGTGTTGTAAATTGAGAGGTTAAATGACCACCCAGGGGAGTAGCTACACTATACCGAGGGTGGTTAGCTGGACATACATCGTCGGAAAATTTTATCGGACATATAGGTGAAATTTTGTAATTTAGGTTATATATAACACAATGTACACCCTTCGAACAATTGTGTTCCACGACTCAGTGGTGAAGGATGCCCAGTGTGTGTCAGGCACTGCGGGTTCGAATCTTCGATGAAGCAGTGGATAGGCTCTCTTTTTTACTATTAAAAACAAAGCTGTTTGACAAGCACTGGATTTGCCTTTATTACTTTCTATTCTTTCTAAAAGATAAGGATATATTATTGAAAAGTATATTTCTAAACAAACCCTTCTTTCTAAATATTTATCTTAATATATATTTTGCAAAGAAGTAAATAGAAAGATTTTACTTATATTATTTTGAAAATTTCAAATTACACCTGATACAATGTAAACATTTAATCTTATGATTATCCTTTTTTCCTACACCCATATATCAAATGTTGAGATATAGAATATACCAATCTTTTTTGAAGGTCAAAATTTTAGTAATTAAGATTACACCAATTGAAGTCAGAAAAGAAAAAAGTAAGAAAATTATTTACATAGGTAATTTAATTATTTATATAAATAAATATGTACTAAGTCTCCGATACATGTATATTTATAAGTGGAAGTTTTCTTTAATTGTTTTTTTGTAGGAACATTTGATAATGAAATATGCAGTTCAATCTAAATTTTGAATATAACAAAACCGTTTATATTTGTGATTTCAATAATATATTACTATTTTTATATGTATATATCTGTAAGTGCCTGAAAAAATTTACTTAAGTATTATTTTTAAATTTATCGATGTTTTTCACATCACATGAAGAGCAAATAATTTTAGTAGTTTTATTTAAAATAAACTACAGTTGACTTTTGTTTAGAATTTTGTCCTCTTCACTTGTCGGACACCACTAATGGTTCTTGGTTATTCTCTTTTGTTATTTTCTAACCTTGTTGTTTCACTGATTCCGGTGATTTTCTTTACTGGGAATTTTAAAGATATTTTCTTTTCTTAACTAAAATTTTCCGTGACAACACATTACAAATGTAGCATTTGGATATGCTCCGAGAACAAACTACGAAGAAAAATGGCAAACTAATATTATGTAGTTTGTTTTAATTGGTGCATCCATTCATTGAGGTGATTTTACTATATAAGTTTGAACACCCTTAATCAAATTCCTAGCTCCACCGTGGAAACCACCTACCGGAAGGTAGTCGAATTCATGTTTACCCATCATTTATGAACAACCCTTACTAGTTGTGGCTTTTTACTCATCTAAGTACCTATCTCTAACTTTTGATACATAGGGGGGATGAGTTAAAATACTTGGGATTAGCCTTTACAGGTATTAGTATGAAGTTGACAAATCAGCGATCATAGACTCTGTTTAAAGAAGACTTCATTGGTTCTTTTTCCAAAAAAGAAAAAAGACTTCATTGGTTATGCTTGGGCAAGACATCTTGTAGTTGCTATATATGAGCTATCAAACCTGAAGGGCTACAGCAGATCCATTACTCAAGTATTGTTCCTGTTCATTCCTATTCACTGGGTTGGGGTTTTGGGGTTGGAAGAGCATCAGCTGGGTCCAGGAAAGCTTTTCCTGTGCGCCAGGTTTCTTATTCATTTTGTTTTGGATCTATGCAATCGTAGGTGGTGTTTTGCATTCAAGATAATGAACCTTGCAGTATGTTGATTTTGAAAATCACTCCCTTCTTTATTATGTGAACAAGGGGTTATTTGCAGAGCCATGCTTTTATGTAGTCCCTTATGTTTCCAGTTTTTAGGATCTATTTTGGCTAGAAACCCTTTCTGTAACACAGTTATGGAGTTCTTCACCAACATAGTCTTGGCAAGAAAGACACAGTGAGAAATCCAAAAACTTATTTGCCCCTTACATATTGCTGAGCCAATAGCTGTTCCAAGCACCCGGATATTTGGCAGTGATGTTCTTTTTGGGAGAACTACTAAAAGAACATTGAATATAAATAGAAACACATTCTTGAATTAGAATAGAATTAGGAAACCAGGAAATTAATATTTACACGGGTCACAATGTTTTTCATATTTTATTTCTTGAAGTGGAAAACTACTTGTAGTTTTGCTTCTATGAATTTTGTTGTTTATGTTTGTGGTGGATATTAACATCATCACACTTCTTTCTCCTTGTCGCAGGTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGTGCTTGGGTGGATCTACTGGTACGCTTCTGGTGACTCATGTGCTTTTATTAGGTTTTACTTGTTTCATGCTACTATATGAGACTCTTAAGAGTTTGAGTTAAATGGTTTTTGCTCCTGCTTGAGCCTCCCTGTTGGATATCTTGAAGAGTTGAATCTTTGATAAAAGTTCTGGTAGCCTGGATGTTCTTACTTTTTTTCATTTAGTGAGAGAGATTCATCACTTTTCTGCTTTCCCCAACTACAAAGATGTGTCGATGCCTTCACCAACCAGCCATATTTATGTTTTCTACTGAGGATTTTGTCCAAGGTGATAAACCCCCAAAACTGGATGCTGATCTGTAGTATAGTGGTAAAAAAGTTCTTGTTTGTCAAAGAAGATATGGACTCTTGCACATCTATCGTTCACTAGTTTCTTTCTGTTACAATGTATTGTTATGCTTTTCTGTGTAGACCTTTCTACCTGCACTGGTGCCTGTTGTTTTTATGCCATCACTCAGTTACCTTGCATTTTAAACTTCCTTTAGTGGGGTTTGAATATTCCAGTTTCCTTTCGTTGAACTTTATGTGTGCATTTGTTACGAAGGAAAATGTTTTTTTTTGAAGATTTTTTTCTTGTACAATGTTTTCCTAAAAAATAAGATAAGTGAATTTTTACTTATTTTCTGGTGTTTGATGAGTAAGCAGAAAATATTTTGTAAAATCTAGACAAACACTCTAGGGGTGGGTTAGAAGGTAGAAGTGTGGGGGATGGGGATGACGTTGGAAGTAGTGTGTGTTGGAGGGTGGGGATGAAACGATTATGTGGAATGCCACTTATGGAACTTGTTTTCCCGACTTGTACTAGGGAAGTCATTTTCCTCATTTTCAAGGGAACTTATAATTTCTAGAGATAATACTTTTCAAAAATTTCGACAATCTTAATATATTTTCATGAAAATGTTTTCCTCCTACCAAACTCACCGCACCCTATAACATGCAGGGTTGGTGCTATATACTGAAAGTGAACTTTCATGTTTCAGGGAATGATTGCAGGCCATGCTTATTATTTCCTAGAAGACGTCTATCCGCGAATGACTGGTCGTAGACCCCTGAAAACTCCAGCAGTTATCAAAGCATTGTTTGCTGATGAGCCGGTAGTGGTGGCTCGCCCTGCTAATGTTCGCTTCGCTGCTCCTCCTGTTGATGAAGTTCCACCAAATCAATGAGAGAATTTTATAAGTAAACCAGTGGCTCTGTCTTCAGTTTCTGTAAATTGACCGTAGATATTTGGTTGGAGGAAATCAGGGTTGGTGTTGTTGATGATGATTGTGCTAGTTATTAATGCTTTTTGTAATTTAGATCTGGAACTGGAGAAGTGCTGTCTGGTAGAGAAAATTCGCCTATATGAAGTGTTTTTTCTCTGTTAAAAGTCTT</genome_strand>
        <mrna_strand>GTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATG...............................................................................................GTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGTGCTTGGGTGGATCTACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGATTGCAGGCCATGCTTATTATTTCCTAGAAGACGTCTATCCGCGAATGACTGGTCGTAGACCCCTGAAAACTCCAGCAGTTATCAAAGCATTGTTTGCTGATGAGCCGGTAGTGGTGGCTCGCCCTGCTAATGTTCGCTTCGCTGCTCCTCCTGTTGATGAAGTTCCACCAAATCAATGAGAGAATTTTATAAGTAAACCAGTGGCTCTGTCTTCAGTTTCTGTAAATTGACCGTAGATATTTGGTTGGAGGAAATCAGGGTTGGTGTTGTTGATGATGATTGTGCTAGTTATTAATGCTTTTTGTAATTTAGATCTGGAACTGGAGAAGTGCTGTCTGGTAGAGAAAATTCGCCTATATGAAGTGTTTTTTCTCTGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E395908" ref_strand="-" ref_description="SGN-E395908 	[TUS-18-F11]">
      <seq>gagcaagcaaaatccctttttccccaagggctttttggggtctgtttattttccccgcagcttacctcccatgggttcttttgcgcgcttttttgtgttagttggcgccagtgcttgggtggatttactgggaatgattgcaggccctgctttttttttcctagaagacgtctatccgcgaatgactggtcgtagacccctgaaaactccagcagttatcaaagccttgtttgctgatgagccggtagtggtggctccccctgctaatgttcgcttcgctgctcctcctgttgatgaagttcccccaaatcaatgagagaattttataagtaaacccgtggctctgttttcagtttttgtaaattgaccgtagatatttggttggaggaaatcagggttggtgttgttgatgatgattgtgctagttattaatgctttttgtaatttagatttggaactggagaagtgctgtttggtagagaaaattcgcctatatgaagtgttttttttctgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="6336" stop="1059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6036" g_stop="5964" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5963" i_stop="2803" i_length="3161">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.997" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2802" g_stop="2749" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="130" r_length="56" r_score="0.852"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2748" i_stop="1748" i_length="1001">
            <donor d_prob="0.981" d_score="0.83"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1747" g_stop="1359" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="519" r_length="389" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="520" polyA_stop="552"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E395908" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395908" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6036" e_stop="5964"/>
          <exon e_start="2802" e_stop="2749"/>
          <exon e_start="1747" e_stop="1359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAGCAAAATCCATTTATCCACATGAGCTTTTT-GGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGGGTTAGTGTTTATTACTTAATCCATCATACTTTGCTTCACAAATCTTTAGCTTTTAAATTTAATAGCTGCCTCACCTGTGGTTTGTCCCCTTGCATCTTTGTGTTTCTTCTGCTAGATATGAAATTATCAATTTGCCATTTCTTTAATGAATCCTGAAGTAGCAGGTGTTTTATGACACTTGCTCCTGGTGTTTCCATACTAGAGCTGAGCTGCTAAAGCCACTCTAAAAGTATATGCTGCGACCAGACACATTGCAGAAACCACTTGGTTCCTTTTTTTCGTTCGATTTTTTCAGAAAGAGCAGTACTTCAAAGCTCATGCCTTGTGTATTTGGTTTTCCTTATTTATATGTTTTAAGGAAGATTTGGTTTAGTGCATTTTACAGATGAAAATGCACATATAATAAACAAGGAAAATCTCTTGGGCCAATTTGACTTGGCTTAAATAAAGTGCTTTTTAAAAGTATTTTTCAAAAAGTCATACTTCATAATTTTTAAGTTAAAAAATGAAAGTAGTATCCAACTTTTAAGCCAAGTCAGAACACCCTCTTGTACTCTCTGTGGTACAGAGGACTTGTGTTGAAATGGTCTACTTATGCTAGCATGGTCAATGATGCTTTTGACGTGAGTTGCTTGGAAATAGAACTCTGGTCAAAATCTGCCAGATATCTTTTCTGCTTTATTGTGGGTTCCATGACCGCAGCTGGTTTGGATTTGACTATGCCTCTCACAATAAGACAGTGGGCTTAAAACATGGCAAGTAACTTTGTTAAACAAATAATGTTTGATAGCAGACAATTAATTTGAAAAAATGGTAAATTTATAAAGAGTACTGGTTTAAGTCTTCAAAGAAAATAATATTACCTTCTAAAAAAAAACCTCTTCAAAGAAAATATGTAGGGGAAAGGAATTCGTACATGTGTGTGTTGTAAATTGAGAGGTTAAATGACCACCCAGGGGAGTAGCTACACTATACCGAGGGTGGTTAGCTGGACATACATCGTCGGAAAATTTTATCGGACATATAGGTGAAATTTTGTAATTTAGGTTATATATAACACAATGTACACCCTTCGAACAATTGTGTTCCACGACTCAGTGGTGAAGGATGCCCAGTGTGTGTCAGGCACTGCGGGTTCGAATCTTCGATGAAGCAGTGGATAGGCTCTCTTTTTTACTATTAAAAACAAAGCTGTTTGACAAGCACTGGATTTGCCTTTATTACTTTCTATTCTTTCTAAAAGATAAGGATATATTATTGAAAAGTATATTTCTAAACAAACCCTTCTTTCTAAATATTTATCTTAATATATATTTTGCAAAGAAGTAAATAGAAAGATTTTACTTATATTATTTTGAAAATTTCAAATTACACCTGATACAATGTAAACATTTAATCTTATGATTATCCTTTTTTCCTACACCCATATATCAAATGTTGAGATATAGAATATACCAATCTTTTTTGAAGGTCAAAATTTTAGTAATTAAGATTACACCAATTGAAGTCAGAAAAGAAAAAAGTAAGAAAATTATTTACATAGGTAATTTAATTATTTATATAAATAAATATGTACTAAGTCTCCGATACATGTATATTTATAAGTGGAAGTTTTCTTTAATTGTTTTTTTGTAGGAACATTTGATAATGAAATATGCAGTTCAATCTAAATTTTGAATATAACAAAACCGTTTATATTTGTGATTTCAATAATATATTACTATTTTTATATGTATATATCTGTAAGTGCCTGAAAAAATTTACTTAAGTATTATTTTTAAATTTATCGATGTTTTTCACATCACATGAAGAGCAAATAATTTTAGTAGTTTTATTTAAAATAAACTACAGTTGACTTTTGTTTAGAATTTTGTCCTCTTCACTTGTCGGACACCACTAATGGTTCTTGGTTATTCTCTTTTGTTATTTTCTAACCTTGTTGTTTCACTGATTCCGGTGATTTTCTTTACTGGGAATTTTAAAGATATTTTCTTTTCTTAACTAAAATTTTCCGTGACAACACATTACAAATGTAGCATTTGGATATGCTCCGAGAACAAACTACGAAGAAAAATGGCAAACTAATATTATGTAGTTTGTTTTAATTGGTGCATCCATTCATTGAGGTGATTTTACTATATAAGTTTGAACACCCTTAATCAAATTCCTAGCTCCACCGTGGAAACCACCTACCGGAAGGTAGTCGAATTCATGTTTACCCATCATTTATGAACAACCCTTACTAGTTGTGGCTTTTTACTCATCTAAGTACCTATCTCTAACTTTTGATACATAGGGGGGATGAGTTAAAATACTTGGGATTAGCCTTTACAGGTATTAGTATGAAGTTGACAAATCAGCGATCATAGACTCTGTTTAAAGAAGACTTCATTGGTTCTTTTTCCAAAAAAGAAAAAAGACTTCATTGGTTATGCTTGGGCAAGACATCTTGTAGTTGCTATATATGAGCTATCAAACCTGAAGGGCTACAGCAGATCCATTACTCAAGTATTGTTCCTGTTCATTCCTATTCACTGGGTTGGGGTTTTGGGGTTGGAAGAGCATCAGCTGGGTCCAGGAAAGCTTTTCCTGTGCGCCAGGTTTCTTATTCATTTTGTTTTGGATCTATGCAATCGTAGGTGGTGTTTTGCATTCAAGATAATGAACCTTGCAGTATGTTGATTTTGAAAATCACTCCCTTCTTTATTATGTGAACAAGGGGTTATTTGCAGAGCCATGCTTTTATGTAGTCCCTTATGTTTCCAGTTTTTAGGATCTATTTTGGCTAGAAACCCTTTCTGTAACACAGTTATGGAGTTCTTCACCAACATAGTCTTGGCAAGAAAGACACAGTGAGAAATCCAAAAACTTATTTGCCCCTTACATATTGCTGAGCCAATAGCTGTTCCAAGCACCCGGATATTTGGCAGTGATGTTCTTTTTGGGAGAACTACTAAAAGAACATTGAATATAAATAGAAACACATTCTTGAATTAGAATAGAATTAGGAAACCAGGAAATTAATATTTACACGGGTCACAATGTTTTTCATATTTTATTTCTTGAAGTGGAAAACTACTTGTAGTTTTGCTTCTATGAATTTTGTTGTTTATGTTTGTGGTGGATATTAACATCATCACACTTCTTTCTCCTTGTCGCAGGTTCTTTTG-G-GCTTCTCTGTGCTAGTTGGCGCCAGTGCTTGGGTGGATCTACTGGTACGCTTCTGGTGACTCATGTGCTTTTATTAGGTTTTACTTGTTTCATGCTACTATATGAGACTCTTAAGAGTTTGAGTTAAATGGTTTTTGCTCCTGCTTGAGCCTCCCTGTTGGATATCTTGAAGAGTTGAATCTTTGATAAAAGTTCTGGTAGCCTGGATGTTCTTACTTTTTTTCATTTAGTGAGAGAGATTCATCACTTTTCTGCTTTCCCCAACTACAAAGATGTGTCGATGCCTTCACCAACCAGCCATATTTATGTTTTCTACTGAGGATTTTGTCCAAGGTGATAAACCCCCAAAACTGGATGCTGATCTGTAGTATAGTGGTAAAAAAGTTCTTGTTTGTCAAAGAAGATATGGACTCTTGCACATCTATCGTTCACTAGTTTCTTTCTGTTACAATGTATTGTTATGCTTTTCTGTGTAGACCTTTCTACCTGCACTGGTGCCTGTTGTTTTTATGCCATCACTCAGTTACCTTGCATTTTAAACTTCCTTTAGTGGGGTTTGAATATTCCAGTTTCCTTTCGTTGAACTTTATGTGTGCATTTGTTACGAAGGAAAATGTTTTTTTTTGAAGATTTTTTTCTTGTACAATGTTTTCCTAAAAAATAAGATAAGTGAATTTTTACTTATTTTCTGGTGTTTGATGAGTAAGCAGAAAATATTTTGTAAAATCTAGACAAACACTCTAGGGGTGGGTTAGAAGGTAGAAGTGTGGGGGATGGGGATGACGTTGGAAGTAGTGTGTGTTGGAGGGTGGGGATGAAACGATTATGTGGAATGCCACTTATGGAACTTGTTTTCCCGACTTGTACTAGGGAAGTCATTTTCCTCATTTTCAAGGGAACTTATAATTTCTAGAGATAATACTTTTCAAAAATTTCGACAATCTTAATATATTTTCATGAAAATGTTTTCCTCCTACCAAACTCACCGCACCCTATAACATGCAGGGTTGGTGCTATATACTGAAAGTGAACTTTCATGTTTCAGGGAATGATTGCAGGCCATGCTTATTATTTCCTAGAAGACGTCTATCCGCGAATGACTGGTCGTAGACCCCTGAAAACTCCAGCAGTTATCAAAGCATTGTTTGCTGATGAGCCGGTAGTGGTGGCTCGCCCTGCTAATGTTCGCTTCGCTGCTCCTCCTGTTGATGAAGTTCCACCAAATCAATGAGAGAATTTTATAAGTAAACCAGTGGCTCTGTCTTCAGTTTCTGTAAATTGACCGTAGATATTTGGTTGGAGGAAATCAGGGTTGGTGTTGTTGATGATGATTGTGCTAGTTATTAATGCTTTTTGTAATTTAGATCTGGAACTGGAGAAGTGCTGTCTGGTAGAGAAAATTCGCCTATATGAAGTGTTTTTTCTCTGTTAAAA</genome_strand>
        <mrna_strand>GAGCAAGCAAAATCCCTTTTTCCCCAAGGGCTTTTTGGGGTCTGTTTATTTTCCCCGCAGCTTACCTCCCATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTTGCGCGCTTTTTTGTGTTAGTTGGCGCCAGTGCTTGGGTGGATTTACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGATTGCAGGCCCTGCTTTTTTTTTCCTAGAAGACGTCTATCCGCGAATGACTGGTCGTAGACCCCTGAAAACTCCAGCAGTTATCAAAGCCTTGTTTGCTGATGAGCCGGTAGTGGTGGCTCCCCCTGCTAATGTTCGCTTCGCTGCTCCTCCTGTTGATGAAGTTCCCCCAAATCAATGAGAGAATTTTATAAGTAAACCCGTGGCTCTGTTTTCAGTTTTTGTAAATTGACCGTAGATATTTGGTTGGAGGAAATCAGGGTTGGTGTTGTTGATGATGATTGTGCTAGTTATTAATGCTTTTTGTAATTTAGATTTGGAACTGGAGAAGTGCTGTTTGGTAGAGAAAATTCGCCTATATGAAGTGTTTTTTTTCTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E379217" ref_strand="-" ref_description="SGN-E379217 	[TUS-3-B2]">
      <seq>ttcggaagatggacttggactttctgtttcacatgtttttcctagctcggtactgcaagcttctagaagagaactccttcaggggaaggacggcagatttcttctacatgctcttgtttggtgccactgttttaacaggaattgttcttgtcggggggatgataccttatgtctcagagtcatttgcaaggatcatattcctgagcaattcattgacttttatgatggtttatgtatggagcaagcaaaatccatttatccacatgagctttttgggtctgtttactttcaccgcagcttacctcccatgggttcttttgggcttctctgtgctagttggcgccagtgcttgggtggatctactgggaatgattgcaggccatgcttattatttcctagaagacgtctatccgcgaatgactggtcgtagacccctgaaaactccagcagttatcaaagcattgtttgctgatgagccggtagtggtggctcgccctgctaatgttcgcttcgctgctcctcctgttgatgaagttccaccaaatcaatgagagaattttataagtaaaccagtggctctgtcttcagtttctgtaaattgaccgtagatatttggttggaggaaatcagggttggtgttgttgatgatgattgtgctagttattaatgcttttggtaatttagatctggaacttcagaagtgcgactggtagagaaaattcgcctatatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="6658" stop="1079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6357" g_stop="6143" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="227" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6142" i_stop="6048" i_length="95">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6047" g_stop="5964" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="311" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5963" i_stop="2803" i_length="3161">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2802" g_stop="2749" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="365" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2748" i_stop="1748" i_length="1001">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1747" g_stop="1379" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="733" r_length="368" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E379217" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379217" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6357" e_stop="6143"/>
          <exon e_start="6047" e_stop="5964"/>
          <exon e_start="2802" e_stop="2749"/>
          <exon e_start="1747" e_stop="1379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATGGTTAGCTCCTCTGCAGTATAACTCCATTTTTGACTCGGCTTTGTTTTATGTCTTAGTCTTTCTTTTTTCATCGTTCTGCTTCCTTCTATGTGTAGGTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGGGTTAGTGTTTATTACTTAATCCATCATACTTTGCTTCACAAATCTTTAGCTTTTAAATTTAATAGCTGCCTCACCTGTGGTTTGTCCCCTTGCATCTTTGTGTTTCTTCTGCTAGATATGAAATTATCAATTTGCCATTTCTTTAATGAATCCTGAAGTAGCAGGTGTTTTATGACACTTGCTCCTGGTGTTTCCATACTAGAGCTGAGCTGCTAAAGCCACTCTAAAAGTATATGCTGCGACCAGACACATTGCAGAAACCACTTGGTTCCTTTTTTTCGTTCGATTTTTTCAGAAAGAGCAGTACTTCAAAGCTCATGCCTTGTGTATTTGGTTTTCCTTATTTATATGTTTTAAGGAAGATTTGGTTTAGTGCATTTTACAGATGAAAATGCACATATAATAAACAAGGAAAATCTCTTGGGCCAATTTGACTTGGCTTAAATAAAGTGCTTTTTAAAAGTATTTTTCAAAAAGTCATACTTCATAATTTTTAAGTTAAAAAATGAAAGTAGTATCCAACTTTTAAGCCAAGTCAGAACACCCTCTTGTACTCTCTGTGGTACAGAGGACTTGTGTTGAAATGGTCTACTTATGCTAGCATGGTCAATGATGCTTTTGACGTGAGTTGCTTGGAAATAGAACTCTGGTCAAAATCTGCCAGATATCTTTTCTGCTTTATTGTGGGTTCCATGACCGCAGCTGGTTTGGATTTGACTATGCCTCTCACAATAAGACAGTGGGCTTAAAACATGGCAAGTAACTTTGTTAAACAAATAATGTTTGATAGCAGACAATTAATTTGAAAAAATGGTAAATTTATAAAGAGTACTGGTTTAAGTCTTCAAAGAAAATAATATTACCTTCTAAAAAAAAACCTCTTCAAAGAAAATATGTAGGGGAAAGGAATTCGTACATGTGTGTGTTGTAAATTGAGAGGTTAAATGACCACCCAGGGGAGTAGCTACACTATACCGAGGGTGGTTAGCTGGACATACATCGTCGGAAAATTTTATCGGACATATAGGTGAAATTTTGTAATTTAGGTTATATATAACACAATGTACACCCTTCGAACAATTGTGTTCCACGACTCAGTGGTGAAGGATGCCCAGTGTGTGTCAGGCACTGCGGGTTCGAATCTTCGATGAAGCAGTGGATAGGCTCTCTTTTTTACTATTAAAAACAAAGCTGTTTGACAAGCACTGGATTTGCCTTTATTACTTTCTATTCTTTCTAAAAGATAAGGATATATTATTGAAAAGTATATTTCTAAACAAACCCTTCTTTCTAAATATTTATCTTAATATATATTTTGCAAAGAAGTAAATAGAAAGATTTTACTTATATTATTTTGAAAATTTCAAATTACACCTGATACAATGTAAACATTTAATCTTATGATTATCCTTTTTTCCTACACCCATATATCAAATGTTGAGATATAGAATATACCAATCTTTTTTGAAGGTCAAAATTTTAGTAATTAAGATTACACCAATTGAAGTCAGAAAAGAAAAAAGTAAGAAAATTATTTACATAGGTAATTTAATTATTTATATAAATAAATATGTACTAAGTCTCCGATACATGTATATTTATAAGTGGAAGTTTTCTTTAATTGTTTTTTTGTAGGAACATTTGATAATGAAATATGCAGTTCAATCTAAATTTTGAATATAACAAAACCGTTTATATTTGTGATTTCAATAATATATTACTATTTTTATATGTATATATCTGTAAGTGCCTGAAAAAATTTACTTAAGTATTATTTTTAAATTTATCGATGTTTTTCACATCACATGAAGAGCAAATAATTTTAGTAGTTTTATTTAAAATAAACTACAGTTGACTTTTGTTTAGAATTTTGTCCTCTTCACTTGTCGGACACCACTAATGGTTCTTGGTTATTCTCTTTTGTTATTTTCTAACCTTGTTGTTTCACTGATTCCGGTGATTTTCTTTACTGGGAATTTTAAAGATATTTTCTTTTCTTAACTAAAATTTTCCGTGACAACACATTACAAATGTAGCATTTGGATATGCTCCGAGAACAAACTACGAAGAAAAATGGCAAACTAATATTATGTAGTTTGTTTTAATTGGTGCATCCATTCATTGAGGTGATTTTACTATATAAGTTTGAACACCCTTAATCAAATTCCTAGCTCCACCGTGGAAACCACCTACCGGAAGGTAGTCGAATTCATGTTTACCCATCATTTATGAACAACCCTTACTAGTTGTGGCTTTTTACTCATCTAAGTACCTATCTCTAACTTTTGATACATAGGGGGGATGAGTTAAAATACTTGGGATTAGCCTTTACAGGTATTAGTATGAAGTTGACAAATCAGCGATCATAGACTCTGTTTAAAGAAGACTTCATTGGTTCTTTTTCCAAAAAAGAAAAAAGACTTCATTGGTTATGCTTGGGCAAGACATCTTGTAGTTGCTATATATGAGCTATCAAACCTGAAGGGCTACAGCAGATCCATTACTCAAGTATTGTTCCTGTTCATTCCTATTCACTGGGTTGGGGTTTTGGGGTTGGAAGAGCATCAGCTGGGTCCAGGAAAGCTTTTCCTGTGCGCCAGGTTTCTTATTCATTTTGTTTTGGATCTATGCAATCGTAGGTGGTGTTTTGCATTCAAGATAATGAACCTTGCAGTATGTTGATTTTGAAAATCACTCCCTTCTTTATTATGTGAACAAGGGGTTATTTGCAGAGCCATGCTTTTATGTAGTCCCTTATGTTTCCAGTTTTTAGGATCTATTTTGGCTAGAAACCCTTTCTGTAACACAGTTATGGAGTTCTTCACCAACATAGTCTTGGCAAGAAAGACACAGTGAGAAATCCAAAAACTTATTTGCCCCTTACATATTGCTGAGCCAATAGCTGTTCCAAGCACCCGGATATTTGGCAGTGATGTTCTTTTTGGGAGAACTACTAAAAGAACATTGAATATAAATAGAAACACATTCTTGAATTAGAATAGAATTAGGAAACCAGGAAATTAATATTTACACGGGTCACAATGTTTTTCATATTTTATTTCTTGAAGTGGAAAACTACTTGTAGTTTTGCTTCTATGAATTTTGTTGTTTATGTTTGTGGTGGATATTAACATCATCACACTTCTTTCTCCTTGTCGCAGGTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGTGCTTGGGTGGATCTACTGGTACGCTTCTGGTGACTCATGTGCTTTTATTAGGTTTTACTTGTTTCATGCTACTATATGAGACTCTTAAGAGTTTGAGTTAAATGGTTTTTGCTCCTGCTTGAGCCTCCCTGTTGGATATCTTGAAGAGTTGAATCTTTGATAAAAGTTCTGGTAGCCTGGATGTTCTTACTTTTTTTCATTTAGTGAGAGAGATTCATCACTTTTCTGCTTTCCCCAACTACAAAGATGTGTCGATGCCTTCACCAACCAGCCATATTTATGTTTTCTACTGAGGATTTTGTCCAAGGTGATAAACCCCCAAAACTGGATGCTGATCTGTAGTATAGTGGTAAAAAAGTTCTTGTTTGTCAAAGAAGATATGGACTCTTGCACATCTATCGTTCACTAGTTTCTTTCTGTTACAATGTATTGTTATGCTTTTCTGTGTAGACCTTTCTACCTGCACTGGTGCCTGTTGTTTTTATGCCATCACTCAGTTACCTTGCATTTTAAACTTCCTTTAGTGGGGTTTGAATATTCCAGTTTCCTTTCGTTGAACTTTATGTGTGCATTTGTTACGAAGGAAAATGTTTTTTTTTGAAGATTTTTTTCTTGTACAATGTTTTCCTAAAAAATAAGATAAGTGAATTTTTACTTATTTTCTGGTGTTTGATGAGTAAGCAGAAAATATTTTGTAAAATCTAGACAAACACTCTAGGGGTGGGTTAGAAGGTAGAAGTGTGGGGGATGGGGATGACGTTGGAAGTAGTGTGTGTTGGAGGGTGGGGATGAAACGATTATGTGGAATGCCACTTATGGAACTTGTTTTCCCGACTTGTACTAGGGAAGTCATTTTCCTCATTTTCAAGGGAACTTATAATTTCTAGAGATAATACTTTTCAAAAATTTCGACAATCTTAATATATTTTCATGAAAATGTTTTCCTCCTACCAAACTCACCGCACCCTATAACATGCAGGGTTGGTGCTATATACTGAAAGTGAACTTTCATGTTTCAGGGAATGATTGCAGGCCATGCTTATTATTTCCTAGAAGACGTCTATCCGCGAATGACTGGTCGTAGACCCCTGAAAACTCCAGCAGTTATCAAAGCATTGTTTGCTGATGAGCCGGTAGTGGTGGCTCGCCCTGCTAATGTTCGCTTCGCTGCTCCTCCTGTTGATGAAGTTCCACCAAATCAATGAGAGAATTTTATAAGTAAACCAGTGGCTCTGTCTTCAGTTTCTGTAAATTGACCGTAGATATTTGGTTGGAGGAAATCAGGGTTGGTGTTGTTGATGATGATTGTGCTAGTTATTAATGCTTTTTGTAATTTAGATCTGGAACTGGAGAAGTGCTGTCTGGTAGAGAAAATTCGCCTATATGAA</genome_strand>
        <mrna_strand>ACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATG...............................................................................................GTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGTGCTTGGGTGGATCTACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGATTGCAGGCCATGCTTATTATTTCCTAGAAGACGTCTATCCGCGAATGACTGGTCGTAGACCCCTGAAAACTCCAGCAGTTATCAAAGCATTGTTTGCTGATGAGCCGGTAGTGGTGGCTCGCCCTGCTAATGTTCGCTTCGCTGCTCCTCCTGTTGATGAAGTTCCACCAAATCAATGAGAGAATTTTATAAGTAAACCAGTGGCTCTGTCTTCAGTTTCTGTAAATTGACCGTAGATATTTGGTTGGAGGAAATCAGGGTTGGTGTTGTTGATGATGATTGTGCTAGTTATTAATGCTTTTGGTAATTTAGATCTGGAACTTCAGAAGTGC-GACTGGTAGAGAAAATTCGCCTATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E549612" ref_strand="-" ref_description="SGN-E549612 	[TUS-6-B10]">
      <seq>aggggaaggacggcagatttcttctacatgctcttgttggtgcccactgttttaacaggaattgttcttgtcggggggatgataccttatgtctcagagtcatttgcaaggatcatattcctgagcaattcattgacttttatgatggtttatgtatggagcaagcaaaatccatttatccacatgagctttttgggtctgtttactttcaccgcagcttacctcccatgggttcttttgggcttctctgtgctagttggcgccagtgcttgggtggatctactgggaatgattgcaggccatgcttattatttcctagaagacgtctatccgcgaatgactggtcgtagacccctgaaaactccagcagttatcaaagcattgtttgctgatgagccggtagtggtggctcgccctgctaatgttcgcttcgctgctcctcctgttgatgaagttccaccaaatcaatgagagaattttataagtaaaccagtggctctgtcttcagtttctgtaaattgaccgtagatatttggttggaggaaatcagggttggtgttgttgatgatgattgtgctagttattaatgcttgtttaatttagatctggaactggagaagtgattcggtagagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="6589" stop="1094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6289" g_stop="6143" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6142" i_stop="6048" i_length="95">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6047" g_stop="5964" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="231" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5963" i_stop="2803" i_length="3161">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2802" g_stop="2749" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="285" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2748" i_stop="1748" i_length="1001">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1747" g_stop="1394" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="636" r_length="351" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E549612" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549612" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6289" e_stop="6143"/>
          <exon e_start="6047" e_stop="5964"/>
          <exon e_start="2802" e_stop="2749"/>
          <exon e_start="1747" e_stop="1394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATGGTTAGCTCCTCTGCAGTATAACTCCATTTTTGACTCGGCTTTGTTTTATGTCTTAGTCTTTCTTTTTTCATCGTTCTGCTTCCTTCTATGTGTAGGTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGGGTTAGTGTTTATTACTTAATCCATCATACTTTGCTTCACAAATCTTTAGCTTTTAAATTTAATAGCTGCCTCACCTGTGGTTTGTCCCCTTGCATCTTTGTGTTTCTTCTGCTAGATATGAAATTATCAATTTGCCATTTCTTTAATGAATCCTGAAGTAGCAGGTGTTTTATGACACTTGCTCCTGGTGTTTCCATACTAGAGCTGAGCTGCTAAAGCCACTCTAAAAGTATATGCTGCGACCAGACACATTGCAGAAACCACTTGGTTCCTTTTTTTCGTTCGATTTTTTCAGAAAGAGCAGTACTTCAAAGCTCATGCCTTGTGTATTTGGTTTTCCTTATTTATATGTTTTAAGGAAGATTTGGTTTAGTGCATTTTACAGATGAAAATGCACATATAATAAACAAGGAAAATCTCTTGGGCCAATTTGACTTGGCTTAAATAAAGTGCTTTTTAAAAGTATTTTTCAAAAAGTCATACTTCATAATTTTTAAGTTAAAAAATGAAAGTAGTATCCAACTTTTAAGCCAAGTCAGAACACCCTCTTGTACTCTCTGTGGTACAGAGGACTTGTGTTGAAATGGTCTACTTATGCTAGCATGGTCAATGATGCTTTTGACGTGAGTTGCTTGGAAATAGAACTCTGGTCAAAATCTGCCAGATATCTTTTCTGCTTTATTGTGGGTTCCATGACCGCAGCTGGTTTGGATTTGACTATGCCTCTCACAATAAGACAGTGGGCTTAAAACATGGCAAGTAACTTTGTTAAACAAATAATGTTTGATAGCAGACAATTAATTTGAAAAAATGGTAAATTTATAAAGAGTACTGGTTTAAGTCTTCAAAGAAAATAATATTACCTTCTAAAAAAAAACCTCTTCAAAGAAAATATGTAGGGGAAAGGAATTCGTACATGTGTGTGTTGTAAATTGAGAGGTTAAATGACCACCCAGGGGAGTAGCTACACTATACCGAGGGTGGTTAGCTGGACATACATCGTCGGAAAATTTTATCGGACATATAGGTGAAATTTTGTAATTTAGGTTATATATAACACAATGTACACCCTTCGAACAATTGTGTTCCACGACTCAGTGGTGAAGGATGCCCAGTGTGTGTCAGGCACTGCGGGTTCGAATCTTCGATGAAGCAGTGGATAGGCTCTCTTTTTTACTATTAAAAACAAAGCTGTTTGACAAGCACTGGATTTGCCTTTATTACTTTCTATTCTTTCTAAAAGATAAGGATATATTATTGAAAAGTATATTTCTAAACAAACCCTTCTTTCTAAATATTTATCTTAATATATATTTTGCAAAGAAGTAAATAGAAAGATTTTACTTATATTATTTTGAAAATTTCAAATTACACCTGATACAATGTAAACATTTAATCTTATGATTATCCTTTTTTCCTACACCCATATATCAAATGTTGAGATATAGAATATACCAATCTTTTTTGAAGGTCAAAATTTTAGTAATTAAGATTACACCAATTGAAGTCAGAAAAGAAAAAAGTAAGAAAATTATTTACATAGGTAATTTAATTATTTATATAAATAAATATGTACTAAGTCTCCGATACATGTATATTTATAAGTGGAAGTTTTCTTTAATTGTTTTTTTGTAGGAACATTTGATAATGAAATATGCAGTTCAATCTAAATTTTGAATATAACAAAACCGTTTATATTTGTGATTTCAATAATATATTACTATTTTTATATGTATATATCTGTAAGTGCCTGAAAAAATTTACTTAAGTATTATTTTTAAATTTATCGATGTTTTTCACATCACATGAAGAGCAAATAATTTTAGTAGTTTTATTTAAAATAAACTACAGTTGACTTTTGTTTAGAATTTTGTCCTCTTCACTTGTCGGACACCACTAATGGTTCTTGGTTATTCTCTTTTGTTATTTTCTAACCTTGTTGTTTCACTGATTCCGGTGATTTTCTTTACTGGGAATTTTAAAGATATTTTCTTTTCTTAACTAAAATTTTCCGTGACAACACATTACAAATGTAGCATTTGGATATGCTCCGAGAACAAACTACGAAGAAAAATGGCAAACTAATATTATGTAGTTTGTTTTAATTGGTGCATCCATTCATTGAGGTGATTTTACTATATAAGTTTGAACACCCTTAATCAAATTCCTAGCTCCACCGTGGAAACCACCTACCGGAAGGTAGTCGAATTCATGTTTACCCATCATTTATGAACAACCCTTACTAGTTGTGGCTTTTTACTCATCTAAGTACCTATCTCTAACTTTTGATACATAGGGGGGATGAGTTAAAATACTTGGGATTAGCCTTTACAGGTATTAGTATGAAGTTGACAAATCAGCGATCATAGACTCTGTTTAAAGAAGACTTCATTGGTTCTTTTTCCAAAAAAGAAAAAAGACTTCATTGGTTATGCTTGGGCAAGACATCTTGTAGTTGCTATATATGAGCTATCAAACCTGAAGGGCTACAGCAGATCCATTACTCAAGTATTGTTCCTGTTCATTCCTATTCACTGGGTTGGGGTTTTGGGGTTGGAAGAGCATCAGCTGGGTCCAGGAAAGCTTTTCCTGTGCGCCAGGTTTCTTATTCATTTTGTTTTGGATCTATGCAATCGTAGGTGGTGTTTTGCATTCAAGATAATGAACCTTGCAGTATGTTGATTTTGAAAATCACTCCCTTCTTTATTATGTGAACAAGGGGTTATTTGCAGAGCCATGCTTTTATGTAGTCCCTTATGTTTCCAGTTTTTAGGATCTATTTTGGCTAGAAACCCTTTCTGTAACACAGTTATGGAGTTCTTCACCAACATAGTCTTGGCAAGAAAGACACAGTGAGAAATCCAAAAACTTATTTGCCCCTTACATATTGCTGAGCCAATAGCTGTTCCAAGCACCCGGATATTTGGCAGTGATGTTCTTTTTGGGAGAACTACTAAAAGAACATTGAATATAAATAGAAACACATTCTTGAATTAGAATAGAATTAGGAAACCAGGAAATTAATATTTACACGGGTCACAATGTTTTTCATATTTTATTTCTTGAAGTGGAAAACTACTTGTAGTTTTGCTTCTATGAATTTTGTTGTTTATGTTTGTGGTGGATATTAACATCATCACACTTCTTTCTCCTTGTCGCAGGTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGTGCTTGGGTGGATCTACTGGTACGCTTCTGGTGACTCATGTGCTTTTATTAGGTTTTACTTGTTTCATGCTACTATATGAGACTCTTAAGAGTTTGAGTTAAATGGTTTTTGCTCCTGCTTGAGCCTCCCTGTTGGATATCTTGAAGAGTTGAATCTTTGATAAAAGTTCTGGTAGCCTGGATGTTCTTACTTTTTTTCATTTAGTGAGAGAGATTCATCACTTTTCTGCTTTCCCCAACTACAAAGATGTGTCGATGCCTTCACCAACCAGCCATATTTATGTTTTCTACTGAGGATTTTGTCCAAGGTGATAAACCCCCAAAACTGGATGCTGATCTGTAGTATAGTGGTAAAAAAGTTCTTGTTTGTCAAAGAAGATATGGACTCTTGCACATCTATCGTTCACTAGTTTCTTTCTGTTACAATGTATTGTTATGCTTTTCTGTGTAGACCTTTCTACCTGCACTGGTGCCTGTTGTTTTTATGCCATCACTCAGTTACCTTGCATTTTAAACTTCCTTTAGTGGGGTTTGAATATTCCAGTTTCCTTTCGTTGAACTTTATGTGTGCATTTGTTACGAAGGAAAATGTTTTTTTTTGAAGATTTTTTTCTTGTACAATGTTTTCCTAAAAAATAAGATAAGTGAATTTTTACTTATTTTCTGGTGTTTGATGAGTAAGCAGAAAATATTTTGTAAAATCTAGACAAACACTCTAGGGGTGGGTTAGAAGGTAGAAGTGTGGGGGATGGGGATGACGTTGGAAGTAGTGTGTGTTGGAGGGTGGGGATGAAACGATTATGTGGAATGCCACTTATGGAACTTGTTTTCCCGACTTGTACTAGGGAAGTCATTTTCCTCATTTTCAAGGGAACTTATAATTTCTAGAGATAATACTTTTCAAAAATTTCGACAATCTTAATATATTTTCATGAAAATGTTTTCCTCCTACCAAACTCACCGCACCCTATAACATGCAGGGTTGGTGCTATATACTGAAAGTGAACTTTCATGTTTCAGGGAATGATTGCAGGCCATGCTTATTATTTCCTAGAAGACGTCTATCCGCGAATGACTGGTCGTAGACCCCTGAAAACTCCAGCAGTTATCAAAGCATTGTTTGCTGATGAGCCGGTAGTGGTGGCTCGCCCTGCTAATGTTCGCTTCGCTGCTCCTCCTGTTGATGAAGTTCCACCAAATCAATGAGAGAATTTTATAAGTAAACCAGTGGCTCTGTCTTCAGTTTCTGTAAATTGACCGTAGATATTTGGTTGGAGGAAATCAGGGTTGGTGTTGTTGATGATGATTGTGCTAGTTATTAATGCTTTTTGTAATTTAGATCTGGAACTGGAGAAGTGCTGTCTGGTAGAGAAA</genome_strand>
        <mrna_strand>AGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTGGTGCCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATG...............................................................................................GTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGTGCTTGGGTGGATCTACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGATTGCAGGCCATGCTTATTATTTCCTAGAAGACGTCTATCCGCGAATGACTGGTCGTAGACCCCTGAAAACTCCAGCAGTTATCAAAGCATTGTTTGCTGATGAGCCGGTAGTGGTGGCTCGCCCTGCTAATGTTCGCTTCGCTGCTCCTCCTGTTGATGAAGTTCCACCAAATCAATGAGAGAATTTTATAAGTAAACCAGTGGCTCTGTCTTCAGTTTCTGTAAATTGACCGTAGATATTTGGTTGGAGGAAATCAGGGTTGGTGTTGTTGATGATGATTGTGCTAGTTATTAATGCTTGTT-TAATTTAGATCTGGAACTGGAGAAGTGAT-TC-GGTAGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E258643" ref_strand="+" ref_description="SGN-E258643 	[cLEG-50-C20]">
      <seq>ccgattatcacccgttcctacctcactgccgcaatcctcaccacaatcggttgttctctggagattatatctccttataacttgtacctgaaccccaagttagtggtgaagcaataccaggtgtggcgcctggttacaaattttctctactttcggaagatggacttggactttctgtttcacatgtttttcctagctcggtactgcaagcttctagaagagaactccttcaggggaaggacggcagatttcttctacatgctcttgtttggtgccactgttttaacaggaattgttcttgtcggggggatgataccttatgtctcagagtcatttgcaaggatcatattcctgagcaattcattgacttttatgatggtttatgtatggagcaagcaaaatccatttatccacatgagctttttgggtctgtttactttcaccgcagcttacctcccatgggttcttttgggcttctctgtgctagttggcgccagtgcttgggtggatctactgggaatgattgcangccatgcttattatttcctagaagacgtctatccgcgaatgactggtcgtagaccccctgaaactccagcagttatcaaagcattgtttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="8622" stop="1341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8322" g_stop="8260" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8259" i_stop="7147" i_length="1113">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7146" g_stop="7047" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="163" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7046" i_stop="6358" i_length="689">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6357" g_stop="6143" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="378" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6142" i_stop="6048" i_length="95">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6047" g_stop="5964" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="462" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5963" i_stop="2803" i_length="3161">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2802" g_stop="2749" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="516" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="2748" i_stop="1748" i_length="1001">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1747" g_stop="1641" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="623" r_length="107" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E258643" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8322" e_stop="8260"/>
          <exon e_start="7146" e_stop="7047"/>
          <exon e_start="6357" e_stop="6143"/>
          <exon e_start="6047" e_stop="5964"/>
          <exon e_start="2802" e_stop="2749"/>
          <exon e_start="1747" e_stop="1641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAGGTATGGATATGATTCATCTTAAGGAAAAACATTAGACTTTCAAGATTGATTTTTTTAAAAAGTTCCCTGCAAAATTAATTCCTGGCACACAACATTATTTTAACTCGAATTTGAGGATTTTTTTTTTTGAGATATCAATGATAAAAATTGAGGGTTGTTTGTATGATGATTGTTTGTTAATTGGGGTTTGTAATTTGGGATGTTGAGATGAACCTTGATTAATGGATACAGGGGTTTCATATAGCTAACCCTAATTAATTTGGGATTGGGGTGTTGTTGATTGATTGTTGTAATTTGGGATGTTGAAATGGACCTGAATTGAGAAGAATGGATTTACATGTTGTATAGCTGGTCCTAACTAGTGTAGGATTGGAACTTGCACACGATGATTGTTTACCGTATCTACGTTAAACACTGTGGGTGCCACGGCACCAGGTGGTTTCGATTGGAACTATGTTTACATACCCGTATATCTATATTTATGTATCAGGATTATTATAAATATAAATCGTGGCACCCAGAGCAATAATGGAGCTCATGGTACCAACGGTCAAAGCTCAGCTTTTCCTCCCTAGGGACGCAAGTTCGAATCAGGCTGAGTTTATTTTATGGAACTATTTTAGCATGCTGGAATCATTGTTAAAAAAATTGTTAAGTTATGGTTTTCTAGATTAGAACGTTTGACCTCTTATAACTAAAATCTTAACTATACCAAGTAGACTAGAGTATATCTTGTACAAAATTACGCTGATGAATAATAATTGTTTGTTTCCTCTATGAATATTGCCACCACTTTTGCAAAATATTTCATACGTTACGCGACAAAGTAGCATGGCACCTGAAGCTTCCAAATCTTATTTTACTCTTTTCCTTAAACCGTTTATAGTAGCTCTACCCAGTATCCTACTTTCTGGTAGGTTTATCATTCAAATTGTTGATTTGTGATATTATGTAACGACAAAGAAAATTGCAGTATATCCAAATGTAATATTCATTAAAACAATACGGTACAATGCAACAGAACATGATACGATACATTATTAAACAATATGTAACAATCATCTACATAAGAATGTTGGTTGACTGATTGATTGTATTTTGTGTGTGTTGCAGATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGGGTAATTTCTCATCTCCCAGCAGTTAGCTTCTTTTTCTGAAAAGATTTTTTCCTCCTTTAGCTTTAGAGTGGATGAGCGTCTTAATGAGGCATAAGTTTAATTGAACAGCCATGAATCTTTTAAGGCTTTAATGACTAGGCTCTTTTGTTCAATAACTATCCTGGCTAAATACAGGGTTCAGCCAGTACTTTGTAGTCTGACTGATTGTTTTGTAGCACTTCTGTTCAATACACTCTTCTCTCATTATGGTTAATGCTTTAGCAACTCTTTCCAATGGTCATTCGTTAATATGTTTGTAGAAGTCAATTTCCTGATATTTACTTCTTTCTGATCTTGGGAAAAGATATCTCACTCACAGCGAGACGAAGTTGGGTACAAAAAAAGTTGAGAGAAGTGGAAAAAACAAGTCACAGAAATAAATTTTGTAGTTCTTAACAGTATGATAGAATAAATCCAAAATGGTAACTGAGCTCATCCTTGCCTCCTATTTACTACAATTTGTGAATTTTGATTTGCTGCTAATCAGCCCTACAACTTTTCCTTTTAATCATATAATTTTATTTGTGAATGCATCTGAAATTATGAGATGAAGGCAGAGTCACTTGTTTGGAGGAATACATCAACATGAGAAGACACTTCCTATTTCTTTTTCTACGTTAGTCTGACATCCTTTTTCTTAATTTTTTCAGACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATGGTTAGCTCCTCTGCAGTATAACTCCATTTTTGACTCGGCTTTGTTTTATGTCTTAGTCTTTCTTTTTTCATCGTTCTGCTTCCTTCTATGTGTAGGTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGGGTTAGTGTTTATTACTTAATCCATCATACTTTGCTTCACAAATCTTTAGCTTTTAAATTTAATAGCTGCCTCACCTGTGGTTTGTCCCCTTGCATCTTTGTGTTTCTTCTGCTAGATATGAAATTATCAATTTGCCATTTCTTTAATGAATCCTGAAGTAGCAGGTGTTTTATGACACTTGCTCCTGGTGTTTCCATACTAGAGCTGAGCTGCTAAAGCCACTCTAAAAGTATATGCTGCGACCAGACACATTGCAGAAACCACTTGGTTCCTTTTTTTCGTTCGATTTTTTCAGAAAGAGCAGTACTTCAAAGCTCATGCCTTGTGTATTTGGTTTTCCTTATTTATATGTTTTAAGGAAGATTTGGTTTAGTGCATTTTACAGATGAAAATGCACATATAATAAACAAGGAAAATCTCTTGGGCCAATTTGACTTGGCTTAAATAAAGTGCTTTTTAAAAGTATTTTTCAAAAAGTCATACTTCATAATTTTTAAGTTAAAAAATGAAAGTAGTATCCAACTTTTAAGCCAAGTCAGAACACCCTCTTGTACTCTCTGTGGTACAGAGGACTTGTGTTGAAATGGTCTACTTATGCTAGCATGGTCAATGATGCTTTTGACGTGAGTTGCTTGGAAATAGAACTCTGGTCAAAATCTGCCAGATATCTTTTCTGCTTTATTGTGGGTTCCATGACCGCAGCTGGTTTGGATTTGACTATGCCTCTCACAATAAGACAGTGGGCTTAAAACATGGCAAGTAACTTTGTTAAACAAATAATGTTTGATAGCAGACAATTAATTTGAAAAAATGGTAAATTTATAAAGAGTACTGGTTTAAGTCTTCAAAGAAAATAATATTACCTTCTAAAAAAAAACCTCTTCAAAGAAAATATGTAGGGGAAAGGAATTCGTACATGTGTGTGTTGTAAATTGAGAGGTTAAATGACCACCCAGGGGAGTAGCTACACTATACCGAGGGTGGTTAGCTGGACATACATCGTCGGAAAATTTTATCGGACATATAGGTGAAATTTTGTAATTTAGGTTATATATAACACAATGTACACCCTTCGAACAATTGTGTTCCACGACTCAGTGGTGAAGGATGCCCAGTGTGTGTCAGGCACTGCGGGTTCGAATCTTCGATGAAGCAGTGGATAGGCTCTCTTTTTTACTATTAAAAACAAAGCTGTTTGACAAGCACTGGATTTGCCTTTATTACTTTCTATTCTTTCTAAAAGATAAGGATATATTATTGAAAAGTATATTTCTAAACAAACCCTTCTTTCTAAATATTTATCTTAATATATATTTTGCAAAGAAGTAAATAGAAAGATTTTACTTATATTATTTTGAAAATTTCAAATTACACCTGATACAATGTAAACATTTAATCTTATGATTATCCTTTTTTCCTACACCCATATATCAAATGTTGAGATATAGAATATACCAATCTTTTTTGAAGGTCAAAATTTTAGTAATTAAGATTACACCAATTGAAGTCAGAAAAGAAAAAAGTAAGAAAATTATTTACATAGGTAATTTAATTATTTATATAAATAAATATGTACTAAGTCTCCGATACATGTATATTTATAAGTGGAAGTTTTCTTTAATTGTTTTTTTGTAGGAACATTTGATAATGAAATATGCAGTTCAATCTAAATTTTGAATATAACAAAACCGTTTATATTTGTGATTTCAATAATATATTACTATTTTTATATGTATATATCTGTAAGTGCCTGAAAAAATTTACTTAAGTATTATTTTTAAATTTATCGATGTTTTTCACATCACATGAAGAGCAAATAATTTTAGTAGTTTTATTTAAAATAAACTACAGTTGACTTTTGTTTAGAATTTTGTCCTCTTCACTTGTCGGACACCACTAATGGTTCTTGGTTATTCTCTTTTGTTATTTTCTAACCTTGTTGTTTCACTGATTCCGGTGATTTTCTTTACTGGGAATTTTAAAGATATTTTCTTTTCTTAACTAAAATTTTCCGTGACAACACATTACAAATGTAGCATTTGGATATGCTCCGAGAACAAACTACGAAGAAAAATGGCAAACTAATATTATGTAGTTTGTTTTAATTGGTGCATCCATTCATTGAGGTGATTTTACTATATAAGTTTGAACACCCTTAATCAAATTCCTAGCTCCACCGTGGAAACCACCTACCGGAAGGTAGTCGAATTCATGTTTACCCATCATTTATGAACAACCCTTACTAGTTGTGGCTTTTTACTCATCTAAGTACCTATCTCTAACTTTTGATACATAGGGGGGATGAGTTAAAATACTTGGGATTAGCCTTTACAGGTATTAGTATGAAGTTGACAAATCAGCGATCATAGACTCTGTTTAAAGAAGACTTCATTGGTTCTTTTTCCAAAAAAGAAAAAAGACTTCATTGGTTATGCTTGGGCAAGACATCTTGTAGTTGCTATATATGAGCTATCAAACCTGAAGGGCTACAGCAGATCCATTACTCAAGTATTGTTCCTGTTCATTCCTATTCACTGGGTTGGGGTTTTGGGGTTGGAAGAGCATCAGCTGGGTCCAGGAAAGCTTTTCCTGTGCGCCAGGTTTCTTATTCATTTTGTTTTGGATCTATGCAATCGTAGGTGGTGTTTTGCATTCAAGATAATGAACCTTGCAGTATGTTGATTTTGAAAATCACTCCCTTCTTTATTATGTGAACAAGGGGTTATTTGCAGAGCCATGCTTTTATGTAGTCCCTTATGTTTCCAGTTTTTAGGATCTATTTTGGCTAGAAACCCTTTCTGTAACACAGTTATGGAGTTCTTCACCAACATAGTCTTGGCAAGAAAGACACAGTGAGAAATCCAAAAACTTATTTGCCCCTTACATATTGCTGAGCCAATAGCTGTTCCAAGCACCCGGATATTTGGCAGTGATGTTCTTTTTGGGAGAACTACTAAAAGAACATTGAATATAAATAGAAACACATTCTTGAATTAGAATAGAATTAGGAAACCAGGAAATTAATATTTACACGGGTCACAATGTTTTTCATATTTTATTTCTTGAAGTGGAAAACTACTTGTAGTTTTGCTTCTATGAATTTTGTTGTTTATGTTTGTGGTGGATATTAACATCATCACACTTCTTTCTCCTTGTCGCAGGTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGTGCTTGGGTGGATCTACTGGTACGCTTCTGGTGACTCATGTGCTTTTATTAGGTTTTACTTGTTTCATGCTACTATATGAGACTCTTAAGAGTTTGAGTTAAATGGTTTTTGCTCCTGCTTGAGCCTCCCTGTTGGATATCTTGAAGAGTTGAATCTTTGATAAAAGTTCTGGTAGCCTGGATGTTCTTACTTTTTTTCATTTAGTGAGAGAGATTCATCACTTTTCTGCTTTCCCCAACTACAAAGATGTGTCGATGCCTTCACCAACCAGCCATATTTATGTTTTCTACTGAGGATTTTGTCCAAGGTGATAAACCCCCAAAACTGGATGCTGATCTGTAGTATAGTGGTAAAAAAGTTCTTGTTTGTCAAAGAAGATATGGACTCTTGCACATCTATCGTTCACTAGTTTCTTTCTGTTACAATGTATTGTTATGCTTTTCTGTGTAGACCTTTCTACCTGCACTGGTGCCTGTTGTTTTTATGCCATCACTCAGTTACCTTGCATTTTAAACTTCCTTTAGTGGGGTTTGAATATTCCAGTTTCCTTTCGTTGAACTTTATGTGTGCATTTGTTACGAAGGAAAATGTTTTTTTTTGAAGATTTTTTTCTTGTACAATGTTTTCCTAAAAAATAAGATAAGTGAATTTTTACTTATTTTCTGGTGTTTGATGAGTAAGCAGAAAATATTTTGTAAAATCTAGACAAACACTCTAGGGGTGGGTTAGAAGGTAGAAGTGTGGGGGATGGGGATGACGTTGGAAGTAGTGTGTGTTGGAGGGTGGGGATGAAACGATTATGTGGAATGCCACTTATGGAACTTGTTTTCCCGACTTGTACTAGGGAAGTCATTTTCCTCATTTTCAAGGGAACTTATAATTTCTAGAGATAATACTTTTCAAAAATTTCGACAATCTTAATATATTTTCATGAAAATGTTTTCCTCCTACCAAACTCACCGCACCCTATAACATGCAGGGTTGGTGCTATATACTGAAAGTGAACTTTCATGTTTCAGGGAATGATTGCAGGCCATGCTTATTATTTCCTAGAAGACGTCTATCCGCGAATGACTGGTCGTAGACCCCTGAAAACTCCAGCAGTTATCAAAGCATTGTTTGCTGA</genome_strand>
        <mrna_strand>CCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATG...............................................................................................GTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGTGCTTGGGTGGATCTACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATGATTGCANGCCATGCTTATTATTTCCTAGAAGACGTCTATCCGCGAATGACTGGTCGTAGACCCCCTGAAACTCCAGCAGTTATCAAAGCATTGTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E379093" ref_strand="+" ref_description="SGN-E379093 	[TUS-3-B2]">
      <seq>tccgatcacatatatatacatacatacatattatatacacgtgagtgtgtatatatatatatatattagaaatcctcgaattgatcaattttcagataacctagaggctttatcagtcgggttgttagggatttctgggaagttttgttttggggaaagtttgattaagcggaatggcacaagctgtggaagaatggtacaagcagatgccgattatcacccgttcctacctcactgccgcaatcctcaccacaatcggttgttctctggagattatatctccttataacttgtacctgaaccccaagttagtggtgaagcaataccaggtgtggcgcctggttacaaattttctctactttcggaagatggacttggactttctgtttcacatgtttttcctagctcggtactgcaagcttctagaagagaactccttcaggggaaggacggcagatttcttctacatgctcttgtttggtgccactgttttaacaggaattgttcttgtcggggggatgataccttatgtctcagagtcatttgcaaggatcatattcctgagcaattcattgacttttatgatggtttatgtatggagcaagcnaaatccatttatccacatgagctttttgggtctgtttactttcaccgcagcttacctcccatgggttcttttgggcttctctgtgctagttggcgccagtgcttgggtggatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="8831" stop="2450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8531" g_stop="8260" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8259" i_stop="7147" i_length="1113">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7146" g_stop="7047" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="372" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7046" i_stop="6358" i_length="689">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6357" g_stop="6143" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="587" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6142" i_stop="6048" i_length="95">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6047" g_stop="5964" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="671" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5963" i_stop="2803" i_length="3161">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2802" g_stop="2750" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="724" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E379093" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8531" e_stop="8260"/>
          <exon e_start="7146" e_stop="7047"/>
          <exon e_start="6357" e_stop="6143"/>
          <exon e_start="6047" e_stop="5964"/>
          <exon e_start="2802" e_stop="2750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAGGTATGGATATGATTCATCTTAAGGAAAAACATTAGACTTTCAAGATTGATTTTTTTAAAAAGTTCCCTGCAAAATTAATTCCTGGCACACAACATTATTTTAACTCGAATTTGAGGATTTTTTTTTTTGAGATATCAATGATAAAAATTGAGGGTTGTTTGTATGATGATTGTTTGTTAATTGGGGTTTGTAATTTGGGATGTTGAGATGAACCTTGATTAATGGATACAGGGGTTTCATATAGCTAACCCTAATTAATTTGGGATTGGGGTGTTGTTGATTGATTGTTGTAATTTGGGATGTTGAAATGGACCTGAATTGAGAAGAATGGATTTACATGTTGTATAGCTGGTCCTAACTAGTGTAGGATTGGAACTTGCACACGATGATTGTTTACCGTATCTACGTTAAACACTGTGGGTGCCACGGCACCAGGTGGTTTCGATTGGAACTATGTTTACATACCCGTATATCTATATTTATGTATCAGGATTATTATAAATATAAATCGTGGCACCCAGAGCAATAATGGAGCTCATGGTACCAACGGTCAAAGCTCAGCTTTTCCTCCCTAGGGACGCAAGTTCGAATCAGGCTGAGTTTATTTTATGGAACTATTTTAGCATGCTGGAATCATTGTTAAAAAAATTGTTAAGTTATGGTTTTCTAGATTAGAACGTTTGACCTCTTATAACTAAAATCTTAACTATACCAAGTAGACTAGAGTATATCTTGTACAAAATTACGCTGATGAATAATAATTGTTTGTTTCCTCTATGAATATTGCCACCACTTTTGCAAAATATTTCATACGTTACGCGACAAAGTAGCATGGCACCTGAAGCTTCCAAATCTTATTTTACTCTTTTCCTTAAACCGTTTATAGTAGCTCTACCCAGTATCCTACTTTCTGGTAGGTTTATCATTCAAATTGTTGATTTGTGATATTATGTAACGACAAAGAAAATTGCAGTATATCCAAATGTAATATTCATTAAAACAATACGGTACAATGCAACAGAACATGATACGATACATTATTAAACAATATGTAACAATCATCTACATAAGAATGTTGGTTGACTGATTGATTGTATTTTGTGTGTGTTGCAGATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGGGTAATTTCTCATCTCCCAGCAGTTAGCTTCTTTTTCTGAAAAGATTTTTTCCTCCTTTAGCTTTAGAGTGGATGAGCGTCTTAATGAGGCATAAGTTTAATTGAACAGCCATGAATCTTTTAAGGCTTTAATGACTAGGCTCTTTTGTTCAATAACTATCCTGGCTAAATACAGGGTTCAGCCAGTACTTTGTAGTCTGACTGATTGTTTTGTAGCACTTCTGTTCAATACACTCTTCTCTCATTATGGTTAATGCTTTAGCAACTCTTTCCAATGGTCATTCGTTAATATGTTTGTAGAAGTCAATTTCCTGATATTTACTTCTTTCTGATCTTGGGAAAAGATATCTCACTCACAGCGAGACGAAGTTGGGTACAAAAAAAGTTGAGAGAAGTGGAAAAAACAAGTCACAGAAATAAATTTTGTAGTTCTTAACAGTATGATAGAATAAATCCAAAATGGTAACTGAGCTCATCCTTGCCTCCTATTTACTACAATTTGTGAATTTTGATTTGCTGCTAATCAGCCCTACAACTTTTCCTTTTAATCATATAATTTTATTTGTGAATGCATCTGAAATTATGAGATGAAGGCAGAGTCACTTGTTTGGAGGAATACATCAACATGAGAAGACACTTCCTATTTCTTTTTCTACGTTAGTCTGACATCCTTTTTCTTAATTTTTTCAGACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATGGTTAGCTCCTCTGCAGTATAACTCCATTTTTGACTCGGCTTTGTTTTATGTCTTAGTCTTTCTTTTTTCATCGTTCTGCTTCCTTCTATGTGTAGGTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGGGTTAGTGTTTATTACTTAATCCATCATACTTTGCTTCACAAATCTTTAGCTTTTAAATTTAATAGCTGCCTCACCTGTGGTTTGTCCCCTTGCATCTTTGTGTTTCTTCTGCTAGATATGAAATTATCAATTTGCCATTTCTTTAATGAATCCTGAAGTAGCAGGTGTTTTATGACACTTGCTCCTGGTGTTTCCATACTAGAGCTGAGCTGCTAAAGCCACTCTAAAAGTATATGCTGCGACCAGACACATTGCAGAAACCACTTGGTTCCTTTTTTTCGTTCGATTTTTTCAGAAAGAGCAGTACTTCAAAGCTCATGCCTTGTGTATTTGGTTTTCCTTATTTATATGTTTTAAGGAAGATTTGGTTTAGTGCATTTTACAGATGAAAATGCACATATAATAAACAAGGAAAATCTCTTGGGCCAATTTGACTTGGCTTAAATAAAGTGCTTTTTAAAAGTATTTTTCAAAAAGTCATACTTCATAATTTTTAAGTTAAAAAATGAAAGTAGTATCCAACTTTTAAGCCAAGTCAGAACACCCTCTTGTACTCTCTGTGGTACAGAGGACTTGTGTTGAAATGGTCTACTTATGCTAGCATGGTCAATGATGCTTTTGACGTGAGTTGCTTGGAAATAGAACTCTGGTCAAAATCTGCCAGATATCTTTTCTGCTTTATTGTGGGTTCCATGACCGCAGCTGGTTTGGATTTGACTATGCCTCTCACAATAAGACAGTGGGCTTAAAACATGGCAAGTAACTTTGTTAAACAAATAATGTTTGATAGCAGACAATTAATTTGAAAAAATGGTAAATTTATAAAGAGTACTGGTTTAAGTCTTCAAAGAAAATAATATTACCTTCTAAAAAAAAACCTCTTCAAAGAAAATATGTAGGGGAAAGGAATTCGTACATGTGTGTGTTGTAAATTGAGAGGTTAAATGACCACCCAGGGGAGTAGCTACACTATACCGAGGGTGGTTAGCTGGACATACATCGTCGGAAAATTTTATCGGACATATAGGTGAAATTTTGTAATTTAGGTTATATATAACACAATGTACACCCTTCGAACAATTGTGTTCCACGACTCAGTGGTGAAGGATGCCCAGTGTGTGTCAGGCACTGCGGGTTCGAATCTTCGATGAAGCAGTGGATAGGCTCTCTTTTTTACTATTAAAAACAAAGCTGTTTGACAAGCACTGGATTTGCCTTTATTACTTTCTATTCTTTCTAAAAGATAAGGATATATTATTGAAAAGTATATTTCTAAACAAACCCTTCTTTCTAAATATTTATCTTAATATATATTTTGCAAAGAAGTAAATAGAAAGATTTTACTTATATTATTTTGAAAATTTCAAATTACACCTGATACAATGTAAACATTTAATCTTATGATTATCCTTTTTTCCTACACCCATATATCAAATGTTGAGATATAGAATATACCAATCTTTTTTGAAGGTCAAAATTTTAGTAATTAAGATTACACCAATTGAAGTCAGAAAAGAAAAAAGTAAGAAAATTATTTACATAGGTAATTTAATTATTTATATAAATAAATATGTACTAAGTCTCCGATACATGTATATTTATAAGTGGAAGTTTTCTTTAATTGTTTTTTTGTAGGAACATTTGATAATGAAATATGCAGTTCAATCTAAATTTTGAATATAACAAAACCGTTTATATTTGTGATTTCAATAATATATTACTATTTTTATATGTATATATCTGTAAGTGCCTGAAAAAATTTACTTAAGTATTATTTTTAAATTTATCGATGTTTTTCACATCACATGAAGAGCAAATAATTTTAGTAGTTTTATTTAAAATAAACTACAGTTGACTTTTGTTTAGAATTTTGTCCTCTTCACTTGTCGGACACCACTAATGGTTCTTGGTTATTCTCTTTTGTTATTTTCTAACCTTGTTGTTTCACTGATTCCGGTGATTTTCTTTACTGGGAATTTTAAAGATATTTTCTTTTCTTAACTAAAATTTTCCGTGACAACACATTACAAATGTAGCATTTGGATATGCTCCGAGAACAAACTACGAAGAAAAATGGCAAACTAATATTATGTAGTTTGTTTTAATTGGTGCATCCATTCATTGAGGTGATTTTACTATATAAGTTTGAACACCCTTAATCAAATTCCTAGCTCCACCGTGGAAACCACCTACCGGAAGGTAGTCGAATTCATGTTTACCCATCATTTATGAACAACCCTTACTAGTTGTGGCTTTTTACTCATCTAAGTACCTATCTCTAACTTTTGATACATAGGGGGGATGAGTTAAAATACTTGGGATTAGCCTTTACAGGTATTAGTATGAAGTTGACAAATCAGCGATCATAGACTCTGTTTAAAGAAGACTTCATTGGTTCTTTTTCCAAAAAAGAAAAAAGACTTCATTGGTTATGCTTGGGCAAGACATCTTGTAGTTGCTATATATGAGCTATCAAACCTGAAGGGCTACAGCAGATCCATTACTCAAGTATTGTTCCTGTTCATTCCTATTCACTGGGTTGGGGTTTTGGGGTTGGAAGAGCATCAGCTGGGTCCAGGAAAGCTTTTCCTGTGCGCCAGGTTTCTTATTCATTTTGTTTTGGATCTATGCAATCGTAGGTGGTGTTTTGCATTCAAGATAATGAACCTTGCAGTATGTTGATTTTGAAAATCACTCCCTTCTTTATTATGTGAACAAGGGGTTATTTGCAGAGCCATGCTTTTATGTAGTCCCTTATGTTTCCAGTTTTTAGGATCTATTTTGGCTAGAAACCCTTTCTGTAACACAGTTATGGAGTTCTTCACCAACATAGTCTTGGCAAGAAAGACACAGTGAGAAATCCAAAAACTTATTTGCCCCTTACATATTGCTGAGCCAATAGCTGTTCCAAGCACCCGGATATTTGGCAGTGATGTTCTTTTTGGGAGAACTACTAAAAGAACATTGAATATAAATAGAAACACATTCTTGAATTAGAATAGAATTAGGAAACCAGGAAATTAATATTTACACGGGTCACAATGTTTTTCATATTTTATTTCTTGAAGTGGAAAACTACTTGTAGTTTTGCTTCTATGAATTTTGTTGTTTATGTTTGTGGTGGATATTAACATCATCACACTTCTTTCTCCTTGTCGCAGGTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGTGCTTGGGTGGATCTACT</genome_strand>
        <mrna_strand>TCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATG...............................................................................................GTTTATGTATGGAGCAAGCNAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGTGCTTGGGTGGATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E369436" ref_strand="+" ref_description="SGN-E369436 	[TUS-23-M9]">
      <seq>tccgatcacatatatatacatacatacatattatatacacgtgagtgtgtatatatatatatatattagaaatcctcgaattgatcaattttcagataacctagaggctttatcagtcgggttgttagggatttctgggaagttttgttttggggaaagtttgattaagcggaatggcacaagctgtggaagaatggtacaagcagatgccgattatcacccgttcctacctcactgccgcaatcctcaccacaatcggttgttctctggagattatatctccttataacttgtacctgaaccccaagttagtggtgaagcaataccaggtgtggcgcctggttacaaattttctctactttcggaagatggacttggactttctgtttcacatgtttttcctagctcggtactgcaagcttctagaagagaactccttcaggggaaggacggcagatttcttctacatgctcttgtttggtgccactgttttaacaggaattgttcttgtcggggggatgataccttatgtctcagagtcatttgcaaggatcatattcctgagcaattcattgacttttatgatggtttatgtatggagcaagcaaaatccatttatccacatgagctttttgggtctgtttactttcaccgcagcttacctcccatgggttcttttgggcttctctgtgctagttggcgccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="8831" stop="2467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8531" g_stop="8260" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8259" i_stop="7147" i_length="1113">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7146" g_stop="7047" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="372" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7046" i_stop="6358" i_length="689">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6357" g_stop="6143" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="587" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6142" i_stop="6048" i_length="95">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6047" g_stop="5964" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="671" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5963" i_stop="2803" i_length="3161">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2802" g_stop="2767" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="707" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E369436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8531" e_stop="8260"/>
          <exon e_start="7146" e_stop="7047"/>
          <exon e_start="6357" e_stop="6143"/>
          <exon e_start="6047" e_stop="5964"/>
          <exon e_start="2802" e_stop="2767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAGGTATGGATATGATTCATCTTAAGGAAAAACATTAGACTTTCAAGATTGATTTTTTTAAAAAGTTCCCTGCAAAATTAATTCCTGGCACACAACATTATTTTAACTCGAATTTGAGGATTTTTTTTTTTGAGATATCAATGATAAAAATTGAGGGTTGTTTGTATGATGATTGTTTGTTAATTGGGGTTTGTAATTTGGGATGTTGAGATGAACCTTGATTAATGGATACAGGGGTTTCATATAGCTAACCCTAATTAATTTGGGATTGGGGTGTTGTTGATTGATTGTTGTAATTTGGGATGTTGAAATGGACCTGAATTGAGAAGAATGGATTTACATGTTGTATAGCTGGTCCTAACTAGTGTAGGATTGGAACTTGCACACGATGATTGTTTACCGTATCTACGTTAAACACTGTGGGTGCCACGGCACCAGGTGGTTTCGATTGGAACTATGTTTACATACCCGTATATCTATATTTATGTATCAGGATTATTATAAATATAAATCGTGGCACCCAGAGCAATAATGGAGCTCATGGTACCAACGGTCAAAGCTCAGCTTTTCCTCCCTAGGGACGCAAGTTCGAATCAGGCTGAGTTTATTTTATGGAACTATTTTAGCATGCTGGAATCATTGTTAAAAAAATTGTTAAGTTATGGTTTTCTAGATTAGAACGTTTGACCTCTTATAACTAAAATCTTAACTATACCAAGTAGACTAGAGTATATCTTGTACAAAATTACGCTGATGAATAATAATTGTTTGTTTCCTCTATGAATATTGCCACCACTTTTGCAAAATATTTCATACGTTACGCGACAAAGTAGCATGGCACCTGAAGCTTCCAAATCTTATTTTACTCTTTTCCTTAAACCGTTTATAGTAGCTCTACCCAGTATCCTACTTTCTGGTAGGTTTATCATTCAAATTGTTGATTTGTGATATTATGTAACGACAAAGAAAATTGCAGTATATCCAAATGTAATATTCATTAAAACAATACGGTACAATGCAACAGAACATGATACGATACATTATTAAACAATATGTAACAATCATCTACATAAGAATGTTGGTTGACTGATTGATTGTATTTTGTGTGTGTTGCAGATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGGGTAATTTCTCATCTCCCAGCAGTTAGCTTCTTTTTCTGAAAAGATTTTTTCCTCCTTTAGCTTTAGAGTGGATGAGCGTCTTAATGAGGCATAAGTTTAATTGAACAGCCATGAATCTTTTAAGGCTTTAATGACTAGGCTCTTTTGTTCAATAACTATCCTGGCTAAATACAGGGTTCAGCCAGTACTTTGTAGTCTGACTGATTGTTTTGTAGCACTTCTGTTCAATACACTCTTCTCTCATTATGGTTAATGCTTTAGCAACTCTTTCCAATGGTCATTCGTTAATATGTTTGTAGAAGTCAATTTCCTGATATTTACTTCTTTCTGATCTTGGGAAAAGATATCTCACTCACAGCGAGACGAAGTTGGGTACAAAAAAAGTTGAGAGAAGTGGAAAAAACAAGTCACAGAAATAAATTTTGTAGTTCTTAACAGTATGATAGAATAAATCCAAAATGGTAACTGAGCTCATCCTTGCCTCCTATTTACTACAATTTGTGAATTTTGATTTGCTGCTAATCAGCCCTACAACTTTTCCTTTTAATCATATAATTTTATTTGTGAATGCATCTGAAATTATGAGATGAAGGCAGAGTCACTTGTTTGGAGGAATACATCAACATGAGAAGACACTTCCTATTTCTTTTTCTACGTTAGTCTGACATCCTTTTTCTTAATTTTTTCAGACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATGGTTAGCTCCTCTGCAGTATAACTCCATTTTTGACTCGGCTTTGTTTTATGTCTTAGTCTTTCTTTTTTCATCGTTCTGCTTCCTTCTATGTGTAGGTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGGGTTAGTGTTTATTACTTAATCCATCATACTTTGCTTCACAAATCTTTAGCTTTTAAATTTAATAGCTGCCTCACCTGTGGTTTGTCCCCTTGCATCTTTGTGTTTCTTCTGCTAGATATGAAATTATCAATTTGCCATTTCTTTAATGAATCCTGAAGTAGCAGGTGTTTTATGACACTTGCTCCTGGTGTTTCCATACTAGAGCTGAGCTGCTAAAGCCACTCTAAAAGTATATGCTGCGACCAGACACATTGCAGAAACCACTTGGTTCCTTTTTTTCGTTCGATTTTTTCAGAAAGAGCAGTACTTCAAAGCTCATGCCTTGTGTATTTGGTTTTCCTTATTTATATGTTTTAAGGAAGATTTGGTTTAGTGCATTTTACAGATGAAAATGCACATATAATAAACAAGGAAAATCTCTTGGGCCAATTTGACTTGGCTTAAATAAAGTGCTTTTTAAAAGTATTTTTCAAAAAGTCATACTTCATAATTTTTAAGTTAAAAAATGAAAGTAGTATCCAACTTTTAAGCCAAGTCAGAACACCCTCTTGTACTCTCTGTGGTACAGAGGACTTGTGTTGAAATGGTCTACTTATGCTAGCATGGTCAATGATGCTTTTGACGTGAGTTGCTTGGAAATAGAACTCTGGTCAAAATCTGCCAGATATCTTTTCTGCTTTATTGTGGGTTCCATGACCGCAGCTGGTTTGGATTTGACTATGCCTCTCACAATAAGACAGTGGGCTTAAAACATGGCAAGTAACTTTGTTAAACAAATAATGTTTGATAGCAGACAATTAATTTGAAAAAATGGTAAATTTATAAAGAGTACTGGTTTAAGTCTTCAAAGAAAATAATATTACCTTCTAAAAAAAAACCTCTTCAAAGAAAATATGTAGGGGAAAGGAATTCGTACATGTGTGTGTTGTAAATTGAGAGGTTAAATGACCACCCAGGGGAGTAGCTACACTATACCGAGGGTGGTTAGCTGGACATACATCGTCGGAAAATTTTATCGGACATATAGGTGAAATTTTGTAATTTAGGTTATATATAACACAATGTACACCCTTCGAACAATTGTGTTCCACGACTCAGTGGTGAAGGATGCCCAGTGTGTGTCAGGCACTGCGGGTTCGAATCTTCGATGAAGCAGTGGATAGGCTCTCTTTTTTACTATTAAAAACAAAGCTGTTTGACAAGCACTGGATTTGCCTTTATTACTTTCTATTCTTTCTAAAAGATAAGGATATATTATTGAAAAGTATATTTCTAAACAAACCCTTCTTTCTAAATATTTATCTTAATATATATTTTGCAAAGAAGTAAATAGAAAGATTTTACTTATATTATTTTGAAAATTTCAAATTACACCTGATACAATGTAAACATTTAATCTTATGATTATCCTTTTTTCCTACACCCATATATCAAATGTTGAGATATAGAATATACCAATCTTTTTTGAAGGTCAAAATTTTAGTAATTAAGATTACACCAATTGAAGTCAGAAAAGAAAAAAGTAAGAAAATTATTTACATAGGTAATTTAATTATTTATATAAATAAATATGTACTAAGTCTCCGATACATGTATATTTATAAGTGGAAGTTTTCTTTAATTGTTTTTTTGTAGGAACATTTGATAATGAAATATGCAGTTCAATCTAAATTTTGAATATAACAAAACCGTTTATATTTGTGATTTCAATAATATATTACTATTTTTATATGTATATATCTGTAAGTGCCTGAAAAAATTTACTTAAGTATTATTTTTAAATTTATCGATGTTTTTCACATCACATGAAGAGCAAATAATTTTAGTAGTTTTATTTAAAATAAACTACAGTTGACTTTTGTTTAGAATTTTGTCCTCTTCACTTGTCGGACACCACTAATGGTTCTTGGTTATTCTCTTTTGTTATTTTCTAACCTTGTTGTTTCACTGATTCCGGTGATTTTCTTTACTGGGAATTTTAAAGATATTTTCTTTTCTTAACTAAAATTTTCCGTGACAACACATTACAAATGTAGCATTTGGATATGCTCCGAGAACAAACTACGAAGAAAAATGGCAAACTAATATTATGTAGTTTGTTTTAATTGGTGCATCCATTCATTGAGGTGATTTTACTATATAAGTTTGAACACCCTTAATCAAATTCCTAGCTCCACCGTGGAAACCACCTACCGGAAGGTAGTCGAATTCATGTTTACCCATCATTTATGAACAACCCTTACTAGTTGTGGCTTTTTACTCATCTAAGTACCTATCTCTAACTTTTGATACATAGGGGGGATGAGTTAAAATACTTGGGATTAGCCTTTACAGGTATTAGTATGAAGTTGACAAATCAGCGATCATAGACTCTGTTTAAAGAAGACTTCATTGGTTCTTTTTCCAAAAAAGAAAAAAGACTTCATTGGTTATGCTTGGGCAAGACATCTTGTAGTTGCTATATATGAGCTATCAAACCTGAAGGGCTACAGCAGATCCATTACTCAAGTATTGTTCCTGTTCATTCCTATTCACTGGGTTGGGGTTTTGGGGTTGGAAGAGCATCAGCTGGGTCCAGGAAAGCTTTTCCTGTGCGCCAGGTTTCTTATTCATTTTGTTTTGGATCTATGCAATCGTAGGTGGTGTTTTGCATTCAAGATAATGAACCTTGCAGTATGTTGATTTTGAAAATCACTCCCTTCTTTATTATGTGAACAAGGGGTTATTTGCAGAGCCATGCTTTTATGTAGTCCCTTATGTTTCCAGTTTTTAGGATCTATTTTGGCTAGAAACCCTTTCTGTAACACAGTTATGGAGTTCTTCACCAACATAGTCTTGGCAAGAAAGACACAGTGAGAAATCCAAAAACTTATTTGCCCCTTACATATTGCTGAGCCAATAGCTGTTCCAAGCACCCGGATATTTGGCAGTGATGTTCTTTTTGGGAGAACTACTAAAAGAACATTGAATATAAATAGAAACACATTCTTGAATTAGAATAGAATTAGGAAACCAGGAAATTAATATTTACACGGGTCACAATGTTTTTCATATTTTATTTCTTGAAGTGGAAAACTACTTGTAGTTTTGCTTCTATGAATTTTGTTGTTTATGTTTGTGGTGGATATTAACATCATCACACTTCTTTCTCCTTGTCGCAGGTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGT</genome_strand>
        <mrna_strand>TCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATG...............................................................................................GTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E549823" ref_strand="+" ref_description="SGN-E549823 	[TUS-6-B10]">
      <seq>atccgatcacatatatatacatacatacatattatatacacgtgagtgtgtatatatatatatatattagaaatcctcgaattgatcaattttcagataacctagaggctttatcagtcgggttgttagggatttctgggaagttttgttttggggaaagtttgattaagcggaatggcacaagctgtggaagaatggtacaagcagatgccgattatcacccgttcctacctcactgccgcaatcctcaccacaatcggttgttctctggagattatatctccttataacttgtacctgaaccccaagttagtggtgaagcaataccaggtgtggcgcctggttacaaattttctctactttcggaagatggacttggactttctgtttcacatgtttttcctagctcggtactgcaagcttctagaagagaactccttcaggggaaggacggcagatttcttctacatgctcttgtttggtgccactgttttaacaggaattgttcttgtcggggggatgataccttatgtctcagagtcatttgcaaggatcatattcctgagcaattcattgacttttatgatggtttatgtatggagcaaggcaaatccatttatccacatgagctttttgggtctgtttacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="8832" stop="5686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8532" g_stop="8260" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8259" i_stop="7147" i_length="1113">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7146" g_stop="7047" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="373" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7046" i_stop="6358" i_length="689">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6357" g_stop="6143" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="588" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6142" i_stop="6048" i_length="95">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6047" g_stop="5986" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="650" r_length="62" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E549823" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8532" e_stop="8260"/>
          <exon e_start="7146" e_stop="7047"/>
          <exon e_start="6357" e_stop="6143"/>
          <exon e_start="6047" e_stop="5986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAGGTATGGATATGATTCATCTTAAGGAAAAACATTAGACTTTCAAGATTGATTTTTTTAAAAAGTTCCCTGCAAAATTAATTCCTGGCACACAACATTATTTTAACTCGAATTTGAGGATTTTTTTTTTTGAGATATCAATGATAAAAATTGAGGGTTGTTTGTATGATGATTGTTTGTTAATTGGGGTTTGTAATTTGGGATGTTGAGATGAACCTTGATTAATGGATACAGGGGTTTCATATAGCTAACCCTAATTAATTTGGGATTGGGGTGTTGTTGATTGATTGTTGTAATTTGGGATGTTGAAATGGACCTGAATTGAGAAGAATGGATTTACATGTTGTATAGCTGGTCCTAACTAGTGTAGGATTGGAACTTGCACACGATGATTGTTTACCGTATCTACGTTAAACACTGTGGGTGCCACGGCACCAGGTGGTTTCGATTGGAACTATGTTTACATACCCGTATATCTATATTTATGTATCAGGATTATTATAAATATAAATCGTGGCACCCAGAGCAATAATGGAGCTCATGGTACCAACGGTCAAAGCTCAGCTTTTCCTCCCTAGGGACGCAAGTTCGAATCAGGCTGAGTTTATTTTATGGAACTATTTTAGCATGCTGGAATCATTGTTAAAAAAATTGTTAAGTTATGGTTTTCTAGATTAGAACGTTTGACCTCTTATAACTAAAATCTTAACTATACCAAGTAGACTAGAGTATATCTTGTACAAAATTACGCTGATGAATAATAATTGTTTGTTTCCTCTATGAATATTGCCACCACTTTTGCAAAATATTTCATACGTTACGCGACAAAGTAGCATGGCACCTGAAGCTTCCAAATCTTATTTTACTCTTTTCCTTAAACCGTTTATAGTAGCTCTACCCAGTATCCTACTTTCTGGTAGGTTTATCATTCAAATTGTTGATTTGTGATATTATGTAACGACAAAGAAAATTGCAGTATATCCAAATGTAATATTCATTAAAACAATACGGTACAATGCAACAGAACATGATACGATACATTATTAAACAATATGTAACAATCATCTACATAAGAATGTTGGTTGACTGATTGATTGTATTTTGTGTGTGTTGCAGATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGGGTAATTTCTCATCTCCCAGCAGTTAGCTTCTTTTTCTGAAAAGATTTTTTCCTCCTTTAGCTTTAGAGTGGATGAGCGTCTTAATGAGGCATAAGTTTAATTGAACAGCCATGAATCTTTTAAGGCTTTAATGACTAGGCTCTTTTGTTCAATAACTATCCTGGCTAAATACAGGGTTCAGCCAGTACTTTGTAGTCTGACTGATTGTTTTGTAGCACTTCTGTTCAATACACTCTTCTCTCATTATGGTTAATGCTTTAGCAACTCTTTCCAATGGTCATTCGTTAATATGTTTGTAGAAGTCAATTTCCTGATATTTACTTCTTTCTGATCTTGGGAAAAGATATCTCACTCACAGCGAGACGAAGTTGGGTACAAAAAAAGTTGAGAGAAGTGGAAAAAACAAGTCACAGAAATAAATTTTGTAGTTCTTAACAGTATGATAGAATAAATCCAAAATGGTAACTGAGCTCATCCTTGCCTCCTATTTACTACAATTTGTGAATTTTGATTTGCTGCTAATCAGCCCTACAACTTTTCCTTTTAATCATATAATTTTATTTGTGAATGCATCTGAAATTATGAGATGAAGGCAGAGTCACTTGTTTGGAGGAATACATCAACATGAGAAGACACTTCCTATTTCTTTTTCTACGTTAGTCTGACATCCTTTTTCTTAATTTTTTCAGACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATGGTTAGCTCCTCTGCAGTATAACTCCATTTTTGACTCGGCTTTGTTTTATGTCTTAGTCTTTCTTTTTTCATCGTTCTGCTTCCTTCTATGTGTAGGTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTT</genome_strand>
        <mrna_strand>ATCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATG...............................................................................................GTTTATGTATGGAGCAAGGCAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E395909" ref_strand="+" ref_description="SGN-E395909 	[TUS-18-F11]">
      <seq>atccgatcacatatatatacatacatacatattatatacacgtgagtgtgtatatatatatatatattagaaatcctcgaattgatcaattttcagataacctagaggctttatcagtcgggttgttagggatttctgggaagttttgttttggggaaagtttgattaagcggaatggcacaagctgtggaagaatggtacaagcagatgccgattatcacccgttcctacctcactgccgcaatcctcaccacaatcggttgttctctggagattatatctccttataacttgtacctgaaccccaagttagtggtgaagcaataccaggtgtggcgcctggttacaaattttctctactttcggaagatggacttggactttctgtttcacatgtttttcctagctcggtactgcgggcttctagaagagaactccttcaggggaaggacggcagatttcttctacttgctcttgtttggtgcccctgttttaacaggaaattgttcttgtcgggggggatgataccttatgtctcagagtcatttgccaggatcataattcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="8832" stop="5867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8532" g_stop="8260" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8259" i_stop="7147" i_length="1113">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7146" g_stop="7047" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="373" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7046" i_stop="6358" i_length="689">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6357" g_stop="6166" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="568" r_length="195" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E395909" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8532" e_stop="8260"/>
          <exon e_start="7146" e_stop="7047"/>
          <exon e_start="6357" e_stop="6166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAGGTATGGATATGATTCATCTTAAGGAAAAACATTAGACTTTCAAGATTGATTTTTTTAAAAAGTTCCCTGCAAAATTAATTCCTGGCACACAACATTATTTTAACTCGAATTTGAGGATTTTTTTTTTTGAGATATCAATGATAAAAATTGAGGGTTGTTTGTATGATGATTGTTTGTTAATTGGGGTTTGTAATTTGGGATGTTGAGATGAACCTTGATTAATGGATACAGGGGTTTCATATAGCTAACCCTAATTAATTTGGGATTGGGGTGTTGTTGATTGATTGTTGTAATTTGGGATGTTGAAATGGACCTGAATTGAGAAGAATGGATTTACATGTTGTATAGCTGGTCCTAACTAGTGTAGGATTGGAACTTGCACACGATGATTGTTTACCGTATCTACGTTAAACACTGTGGGTGCCACGGCACCAGGTGGTTTCGATTGGAACTATGTTTACATACCCGTATATCTATATTTATGTATCAGGATTATTATAAATATAAATCGTGGCACCCAGAGCAATAATGGAGCTCATGGTACCAACGGTCAAAGCTCAGCTTTTCCTCCCTAGGGACGCAAGTTCGAATCAGGCTGAGTTTATTTTATGGAACTATTTTAGCATGCTGGAATCATTGTTAAAAAAATTGTTAAGTTATGGTTTTCTAGATTAGAACGTTTGACCTCTTATAACTAAAATCTTAACTATACCAAGTAGACTAGAGTATATCTTGTACAAAATTACGCTGATGAATAATAATTGTTTGTTTCCTCTATGAATATTGCCACCACTTTTGCAAAATATTTCATACGTTACGCGACAAAGTAGCATGGCACCTGAAGCTTCCAAATCTTATTTTACTCTTTTCCTTAAACCGTTTATAGTAGCTCTACCCAGTATCCTACTTTCTGGTAGGTTTATCATTCAAATTGTTGATTTGTGATATTATGTAACGACAAAGAAAATTGCAGTATATCCAAATGTAATATTCATTAAAACAATACGGTACAATGCAACAGAACATGATACGATACATTATTAAACAATATGTAACAATCATCTACATAAGAATGTTGGTTGACTGATTGATTGTATTTTGTGTGTGTTGCAGATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGGGTAATTTCTCATCTCCCAGCAGTTAGCTTCTTTTTCTGAAAAGATTTTTTCCTCCTTTAGCTTTAGAGTGGATGAGCGTCTTAATGAGGCATAAGTTTAATTGAACAGCCATGAATCTTTTAAGGCTTTAATGACTAGGCTCTTTTGTTCAATAACTATCCTGGCTAAATACAGGGTTCAGCCAGTACTTTGTAGTCTGACTGATTGTTTTGTAGCACTTCTGTTCAATACACTCTTCTCTCATTATGGTTAATGCTTTAGCAACTCTTTCCAATGGTCATTCGTTAATATGTTTGTAGAAGTCAATTTCCTGATATTTACTTCTTTCTGATCTTGGGAAAAGATATCTCACTCACAGCGAGACGAAGTTGGGTACAAAAAAAGTTGAGAGAAGTGGAAAAAACAAGTCACAGAAATAAATTTTGTAGTTCTTAACAGTATGATAGAATAAATCCAAAATGGTAACTGAGCTCATCCTTGCCTCCTATTTACTACAATTTGTGAATTTTGATTTGCTGCTAATCAGCCCTACAACTTTTCCTTTTAATCATATAATTTTATTTGTGAATGCATCTGAAATTATGAGATGAAGGCAGAGTCACTTGTTTGGAGGAATACATCAACATGAGAAGACACTTCCTATTTCTTTTTCTACGTTAGTCTGACATCCTTTTTCTTAATTTTTTCAGACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGG-AATTGTTCTTGTC-GGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCAT-ATTCCTGA</genome_strand>
        <mrna_strand>ATCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCGGGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACTTGCTCTTGTTTGGTGCCCCTGTTTTAACAGGAAATTGTTCTTGTCGGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCCAGGATCATAATTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E246841" ref_strand="+" ref_description="SGN-E246841 	[cLEF-41-A14]">
      <seq>tccgatcacatatatatacatacatacatattatatacacgtgagtgtgtatatatatatatatattagaaatcctcgaattgatcaattttcagataacctagaggctttatcagtcgggttgttagggatttctgggaagttttgttttggggaaagtttgattaagcggaatggcacaagctgtggaagaatggtacaagcagatgccgattatcacccgttcctacctcactgccgcaatcctcaccacaatcggttgttctctggagattatatctccttataacttgtacctgaaccccaagttagtggtgaagcaataccaggtgtggcgcctggttacaaattttctctactttcggaagatggacttggactttctgtttcacatgtttttcctagctcggtactgcaagcttctagaagagaactccttcaggggaaggacggcagatttcttctacatgctcttgtttggtgccactgttttaacaggaattgttcttgtcggggggatgatancctatgtctcagagtcatttgcaaggatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="8831" stop="5873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8531" g_stop="8260" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8259" i_stop="7147" i_length="1113">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7146" g_stop="7047" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="372" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7046" i_stop="6358" i_length="689">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6357" g_stop="6173" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="557" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E246841" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8531" e_stop="8260"/>
          <exon e_start="7146" e_stop="7047"/>
          <exon e_start="6357" e_stop="6173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAGGTATGGATATGATTCATCTTAAGGAAAAACATTAGACTTTCAAGATTGATTTTTTTAAAAAGTTCCCTGCAAAATTAATTCCTGGCACACAACATTATTTTAACTCGAATTTGAGGATTTTTTTTTTTGAGATATCAATGATAAAAATTGAGGGTTGTTTGTATGATGATTGTTTGTTAATTGGGGTTTGTAATTTGGGATGTTGAGATGAACCTTGATTAATGGATACAGGGGTTTCATATAGCTAACCCTAATTAATTTGGGATTGGGGTGTTGTTGATTGATTGTTGTAATTTGGGATGTTGAAATGGACCTGAATTGAGAAGAATGGATTTACATGTTGTATAGCTGGTCCTAACTAGTGTAGGATTGGAACTTGCACACGATGATTGTTTACCGTATCTACGTTAAACACTGTGGGTGCCACGGCACCAGGTGGTTTCGATTGGAACTATGTTTACATACCCGTATATCTATATTTATGTATCAGGATTATTATAAATATAAATCGTGGCACCCAGAGCAATAATGGAGCTCATGGTACCAACGGTCAAAGCTCAGCTTTTCCTCCCTAGGGACGCAAGTTCGAATCAGGCTGAGTTTATTTTATGGAACTATTTTAGCATGCTGGAATCATTGTTAAAAAAATTGTTAAGTTATGGTTTTCTAGATTAGAACGTTTGACCTCTTATAACTAAAATCTTAACTATACCAAGTAGACTAGAGTATATCTTGTACAAAATTACGCTGATGAATAATAATTGTTTGTTTCCTCTATGAATATTGCCACCACTTTTGCAAAATATTTCATACGTTACGCGACAAAGTAGCATGGCACCTGAAGCTTCCAAATCTTATTTTACTCTTTTCCTTAAACCGTTTATAGTAGCTCTACCCAGTATCCTACTTTCTGGTAGGTTTATCATTCAAATTGTTGATTTGTGATATTATGTAACGACAAAGAAAATTGCAGTATATCCAAATGTAATATTCATTAAAACAATACGGTACAATGCAACAGAACATGATACGATACATTATTAAACAATATGTAACAATCATCTACATAAGAATGTTGGTTGACTGATTGATTGTATTTTGTGTGTGTTGCAGATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGGGTAATTTCTCATCTCCCAGCAGTTAGCTTCTTTTTCTGAAAAGATTTTTTCCTCCTTTAGCTTTAGAGTGGATGAGCGTCTTAATGAGGCATAAGTTTAATTGAACAGCCATGAATCTTTTAAGGCTTTAATGACTAGGCTCTTTTGTTCAATAACTATCCTGGCTAAATACAGGGTTCAGCCAGTACTTTGTAGTCTGACTGATTGTTTTGTAGCACTTCTGTTCAATACACTCTTCTCTCATTATGGTTAATGCTTTAGCAACTCTTTCCAATGGTCATTCGTTAATATGTTTGTAGAAGTCAATTTCCTGATATTTACTTCTTTCTGATCTTGGGAAAAGATATCTCACTCACAGCGAGACGAAGTTGGGTACAAAAAAAGTTGAGAGAAGTGGAAAAAACAAGTCACAGAAATAAATTTTGTAGTTCTTAACAGTATGATAGAATAAATCCAAAATGGTAACTGAGCTCATCCTTGCCTCCTATTTACTACAATTTGTGAATTTTGATTTGCTGCTAATCAGCCCTACAACTTTTCCTTTTAATCATATAATTTTATTTGTGAATGCATCTGAAATTATGAGATGAAGGCAGAGTCACTTGTTTGGAGGAATACATCAACATGAGAAGACACTTCCTATTTCTTTTTCTACGTTAGTCTGACATCCTTTTTCTTAATTTTTTCAGACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATA</genome_strand>
        <mrna_strand>TCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATANCCTATGTCTCAGAGTCATTTGCAAGGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E251394" ref_strand="+" ref_description="SGN-E251394 	[cLEG-9-C17]">
      <seq>atccgatcacatatatatacatacatacatattatatacacgtgagtgtgtatatatatatatatattagaaatcctcgaattgatcaattttcagataacctagaggctttatcagtcgggttgttagggatttctgggaagttttgttttggggaaagtttgattaagcggaatggcacaagctgtggaagaatggtacaagcagatgccgattatcacccgttcctacctcactgccgcaatcctcaccacaatcggttgttctctggagattatatctccttataacttgtacctgaaccccaagttagtggtgaagcaataccaggtgtggcgcctggttacaaattttctctactttcggaagatggacttggactttctgtttcacatgtttttcctagctcggtactgctggcttctagaagagaactccttcaggggaaggacggcagatttcttctacatgctcttgtttggtgccactgttttaacaggaattgttcttgtcggggggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="8832" stop="5908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8532" g_stop="8260" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8259" i_stop="7147" i_length="1113">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7146" g_stop="7047" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="373" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7046" i_stop="6358" i_length="689">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6357" g_stop="6208" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="523" r_length="150" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E251394" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8532" e_stop="8260"/>
          <exon e_start="7146" e_stop="7047"/>
          <exon e_start="6357" e_stop="6208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAGGTATGGATATGATTCATCTTAAGGAAAAACATTAGACTTTCAAGATTGATTTTTTTAAAAAGTTCCCTGCAAAATTAATTCCTGGCACACAACATTATTTTAACTCGAATTTGAGGATTTTTTTTTTTGAGATATCAATGATAAAAATTGAGGGTTGTTTGTATGATGATTGTTTGTTAATTGGGGTTTGTAATTTGGGATGTTGAGATGAACCTTGATTAATGGATACAGGGGTTTCATATAGCTAACCCTAATTAATTTGGGATTGGGGTGTTGTTGATTGATTGTTGTAATTTGGGATGTTGAAATGGACCTGAATTGAGAAGAATGGATTTACATGTTGTATAGCTGGTCCTAACTAGTGTAGGATTGGAACTTGCACACGATGATTGTTTACCGTATCTACGTTAAACACTGTGGGTGCCACGGCACCAGGTGGTTTCGATTGGAACTATGTTTACATACCCGTATATCTATATTTATGTATCAGGATTATTATAAATATAAATCGTGGCACCCAGAGCAATAATGGAGCTCATGGTACCAACGGTCAAAGCTCAGCTTTTCCTCCCTAGGGACGCAAGTTCGAATCAGGCTGAGTTTATTTTATGGAACTATTTTAGCATGCTGGAATCATTGTTAAAAAAATTGTTAAGTTATGGTTTTCTAGATTAGAACGTTTGACCTCTTATAACTAAAATCTTAACTATACCAAGTAGACTAGAGTATATCTTGTACAAAATTACGCTGATGAATAATAATTGTTTGTTTCCTCTATGAATATTGCCACCACTTTTGCAAAATATTTCATACGTTACGCGACAAAGTAGCATGGCACCTGAAGCTTCCAAATCTTATTTTACTCTTTTCCTTAAACCGTTTATAGTAGCTCTACCCAGTATCCTACTTTCTGGTAGGTTTATCATTCAAATTGTTGATTTGTGATATTATGTAACGACAAAGAAAATTGCAGTATATCCAAATGTAATATTCATTAAAACAATACGGTACAATGCAACAGAACATGATACGATACATTATTAAACAATATGTAACAATCATCTACATAAGAATGTTGGTTGACTGATTGATTGTATTTTGTGTGTGTTGCAGATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGGGTAATTTCTCATCTCCCAGCAGTTAGCTTCTTTTTCTGAAAAGATTTTTTCCTCCTTTAGCTTTAGAGTGGATGAGCGTCTTAATGAGGCATAAGTTTAATTGAACAGCCATGAATCTTTTAAGGCTTTAATGACTAGGCTCTTTTGTTCAATAACTATCCTGGCTAAATACAGGGTTCAGCCAGTACTTTGTAGTCTGACTGATTGTTTTGTAGCACTTCTGTTCAATACACTCTTCTCTCATTATGGTTAATGCTTTAGCAACTCTTTCCAATGGTCATTCGTTAATATGTTTGTAGAAGTCAATTTCCTGATATTTACTTCTTTCTGATCTTGGGAAAAGATATCTCACTCACAGCGAGACGAAGTTGGGTACAAAAAAAGTTGAGAGAAGTGGAAAAAACAAGTCACAGAAATAAATTTTGTAGTTCTTAACAGTATGATAGAATAAATCCAAAATGGTAACTGAGCTCATCCTTGCCTCCTATTTACTACAATTTGTGAATTTTGATTTGCTGCTAATCAGCCCTACAACTTTTCCTTTTAATCATATAATTTTATTTGTGAATGCATCTGAAATTATGAGATGAAGGCAGAGTCACTTGTTTGGAGGAATACATCAACATGAGAAGACACTTCCTATTTCTTTTTCTACGTTAGTCTGACATCCTTTTTCTTAATTTTTTCAGACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGA</genome_strand>
        <mrna_strand>ATCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCTGGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E210083" ref_strand="+" ref_description="SGN-E210083 	[cLEC-40-G22]">
      <seq>tccgatcacatatatatacatacatacatattatatacacgtgagtgtgtatatatatatatatattagaaatcctcgaattgatcaattttcagataacctagaggctttatcagtcgggttgttagggatttctgggaagttttgttttggggaaagtttgattaagcggaatggcacaagctgtggaagaatggtacaagcagatgccgattatcacccgttcctacctcactgccgcaatcctcaccacaatcggttgttctctggagattatatctccttataacttgtacctgaaccccaagttagtggtgaagcaataccaggtgtggcgcctggttacaaattttctctactttcggaagatggacttggactttctgtttcacatgtttttcctagctcggtactgcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="8831" stop="6010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8531" g_stop="8260" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8259" i_stop="7147" i_length="1113">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7146" g_stop="7047" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="372" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7046" i_stop="6358" i_length="689">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6357" g_stop="6310" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="420" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E210083" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8531" e_stop="8260"/>
          <exon e_start="7146" e_stop="7047"/>
          <exon e_start="6357" e_stop="6310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAGGTATGGATATGATTCATCTTAAGGAAAAACATTAGACTTTCAAGATTGATTTTTTTAAAAAGTTCCCTGCAAAATTAATTCCTGGCACACAACATTATTTTAACTCGAATTTGAGGATTTTTTTTTTTGAGATATCAATGATAAAAATTGAGGGTTGTTTGTATGATGATTGTTTGTTAATTGGGGTTTGTAATTTGGGATGTTGAGATGAACCTTGATTAATGGATACAGGGGTTTCATATAGCTAACCCTAATTAATTTGGGATTGGGGTGTTGTTGATTGATTGTTGTAATTTGGGATGTTGAAATGGACCTGAATTGAGAAGAATGGATTTACATGTTGTATAGCTGGTCCTAACTAGTGTAGGATTGGAACTTGCACACGATGATTGTTTACCGTATCTACGTTAAACACTGTGGGTGCCACGGCACCAGGTGGTTTCGATTGGAACTATGTTTACATACCCGTATATCTATATTTATGTATCAGGATTATTATAAATATAAATCGTGGCACCCAGAGCAATAATGGAGCTCATGGTACCAACGGTCAAAGCTCAGCTTTTCCTCCCTAGGGACGCAAGTTCGAATCAGGCTGAGTTTATTTTATGGAACTATTTTAGCATGCTGGAATCATTGTTAAAAAAATTGTTAAGTTATGGTTTTCTAGATTAGAACGTTTGACCTCTTATAACTAAAATCTTAACTATACCAAGTAGACTAGAGTATATCTTGTACAAAATTACGCTGATGAATAATAATTGTTTGTTTCCTCTATGAATATTGCCACCACTTTTGCAAAATATTTCATACGTTACGCGACAAAGTAGCATGGCACCTGAAGCTTCCAAATCTTATTTTACTCTTTTCCTTAAACCGTTTATAGTAGCTCTACCCAGTATCCTACTTTCTGGTAGGTTTATCATTCAAATTGTTGATTTGTGATATTATGTAACGACAAAGAAAATTGCAGTATATCCAAATGTAATATTCATTAAAACAATACGGTACAATGCAACAGAACATGATACGATACATTATTAAACAATATGTAACAATCATCTACATAAGAATGTTGGTTGACTGATTGATTGTATTTTGTGTGTGTTGCAGATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGGGTAATTTCTCATCTCCCAGCAGTTAGCTTCTTTTTCTGAAAAGATTTTTTCCTCCTTTAGCTTTAGAGTGGATGAGCGTCTTAATGAGGCATAAGTTTAATTGAACAGCCATGAATCTTTTAAGGCTTTAATGACTAGGCTCTTTTGTTCAATAACTATCCTGGCTAAATACAGGGTTCAGCCAGTACTTTGTAGTCTGACTGATTGTTTTGTAGCACTTCTGTTCAATACACTCTTCTCTCATTATGGTTAATGCTTTAGCAACTCTTTCCAATGGTCATTCGTTAATATGTTTGTAGAAGTCAATTTCCTGATATTTACTTCTTTCTGATCTTGGGAAAAGATATCTCACTCACAGCGAGACGAAGTTGGGTACAAAAAAAGTTGAGAGAAGTGGAAAAAACAAGTCACAGAAATAAATTTTGTAGTTCTTAACAGTATGATAGAATAAATCCAAAATGGTAACTGAGCTCATCCTTGCCTCCTATTTACTACAATTTGTGAATTTTGATTTGCTGCTAATCAGCCCTACAACTTTTCCTTTTAATCATATAATTTTATTTGTGAATGCATCTGAAATTATGAGATGAAGGCAGAGTCACTTGTTTGGAGGAATACATCAACATGAGAAGACACTTCCTATTTCTTTTTCTACGTTAGTCTGACATCCTTTTTCTTAATTTTTTCAGACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGC</genome_strand>
        <mrna_strand>TCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E304768" ref_strand="+" ref_description="SGN-E304768 	[cLEX-11-N24]">
      <seq>tgaacttaaaatactactgcaagcagtagtaaagttgcaaaggtggtggcgatgtaaattgcttcatgcacagagaacaaaagccacagttgtcatccaatcgcatgttttaggatggattgcctggaaacgtgcttcaaacaaggaacgattacttcaagcagtattaaagttgcaaaggtggtggagaagtaaattgcttcatgaacagagaacaaaagcagcagttgtcatccaatcacatatcctaggatggttagtccggcaaagtatttcaagaaataaggaccaattacttcaagcaacattgaagttgcaaaggtggtggagagataaattgcttcataaacagaaaacaaaagcagcagttgtcatccaatcgcatgtccaaggatggaaagctcgacaaagtgcttcaaggaagaagcacctaacgttgctagcagtattaaagttgcaaaggtggtggagaggaaaattacttcataaacagagaacaaaatcagcagttgtcatccaatcgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="+" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="22355" stop="23481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22655" g_stop="23181" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="+" ref_id="SGN-E304768" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22655" e_stop="23181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTTAAAATACTACTGCAAGCAGTAGTAAAGTTGCAAAGGTGGTGGCGATGTAAATTGCTTCATGCACAGAGAACAAAAGCCACAGTTGTCATCCAATCGCATGTTTTAGGATGGATTGCCTGGAAACGTGCTTCAAACAAGGAACGATTACTTCAAGCAGTATTAAAGTTGCAAAGGTGGTGGAGAAGTAAATTGCTTCATGAACAGAGAACAAAAGCAGCAGTTGTCATCCAATCACATATCCTAGGATGGTTAGTCCGGCAAAGTATTTCAAGAAATAAGGACCAATTACTTCAAGCAACATTGAAGTTGCAAAGGTGGTGGAGAGATAAATTGCTTCATAAACAGAAAACAAAAGCAGCAGTTGTCATCCAATCGCATGTCCAAGGATGGAAAGCTCGACAAAGTGCTTCAAGGAAGAAGCACCTAACGTTGCTAGCAGTATTAAAGTTGCAAAGGTGGTGGAGAGGAAAATTACTTCATAAACAGAGAACAAAATCAGCAGTTGTCATCCAATCGCATG</genome_strand>
        <mrna_strand>TGAACTTAAAATACTACTGCAAGCAGTAGTAAAGTTGCAAAGGTGGTGGCGATGTAAATTGCTTCATGCACAGAGAACAAAAGCCACAGTTGTCATCCAATCGCATGTTTTAGGATGGATTGCCTGGAAACGTGCTTCAAACAAGGAACGATTACTTCAAGCAGTATTAAAGTTGCAAAGGTGGTGGAGAAGTAAATTGCTTCATGAACAGAGAACAAAAGCAGCAGTTGTCATCCAATCACATATCCTAGGATGGTTAGTCCGGCAAAGTATTTCAAGAAATAAGGACCAATTACTTCAAGCAACATTGAAGTTGCAAAGGTGGTGGAGAGATAAATTGCTTCATAAACAGAAAACAAAAGCAGCAGTTGTCATCCAATCGCATGTCCAAGGATGGAAAGCTCGACAAAGTGCTTCAAGGAAGAAGCACCTAACGTTGCTAGCAGTATTAAAGTTGCAAAGGTGGTGGAGAGGAAAATTACTTCATAAACAGAGAACAAAATCAGCAGTTGTCATCCAATCGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E393110" ref_strand="+" ref_description="SGN-E393110 	[TUS-38-D1]">
      <seq>gaaaatggaattctcaactttccatccctcaacatggaattcttttttcacctctcctctcctctttccctatcagttcattcctgagaattatgttcactggagagagacccctgaatctcacatatactctgctgatcttccaggtgtgaagaaagaggaaataaaggtggaagttgaggattcaagctacctgataataagaactgaagcagccaatgaaacaacagagccaataaggagctttatgaggaaatttaggctacctggaatggtggatatggatggaatttctgctagttatagagatggtgttttgacagtcacagttccaagaacacttgtgagaaggggatttttcattgaaccagatgacttgacagaaagcatagtgaatcttggtgctagtgctgcttgattatttttgcttccaaacaagatttggttgatattgatacctaatcttattattatttttgggtttagggagagggatttcaagattgtgctctctttgagattatgtacataagttagatcagtggtaatccttaaactgaatttgctgttatttccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="26864" stop="25571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26564" g_stop="26419" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26418" i_stop="26305" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26304" g_stop="25864" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="587" r_length="441" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E393110" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26564" e_stop="26419"/>
          <exon e_start="26304" e_stop="25864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGAATTCTCAACTTTCCATCCCTCAACATGGAATTCTTTTTTCACCTCTCCTCTCCTCTTTCCCTATCAGTTCATTCCTGAGAATTATGTTCACTGGAGAGAGACCCCTGAATCTCACATATACTCTGCTGATCTTCCAGGTAAACACACACACACATAAAAAAGAACAGTTGAAGTGACTCTTTTTTGGACACCCTTTTTTTTTTGTATTGGGTATTAATTTTCTTGAAGTTTGGATGTTTTTGTTTTGACAGGTGTGAAGAAAGAGGAAATAAAGGTGGAAGTTGAGGATTCAAGCTACCTGATAATAAGAACTGAAGCAGCCAATGAAACAACAGAGCCAATAAGGAGCTTTATGAGGAAATTTAGGCTACCTGGAATGGTGGATATGGATGGAATTTCTGCTAGTTATAGAGATGGTGTTTTGACAGTCACAGTTCCAAGAACACTTGTGAGAAGGGGATTTTTCATTGAACCAGATGACTTGACAGAAAGCATAGTGAATCTTGGTGCTAGTGCTGCTTGATTATTTTTGCTTCCAAACAAGATTTGGTTGATATTGATACCTAATCTTATTATTATTTTTGGGTTTAGGGAGAGGGATTTCAAGATTGTGCTCTCTTTGAGATTATGTACATAAGTTAGATCAGTGGTAATCCTTAAACTGAATTTGCTGTTATTTCAAAAACTATTGA</genome_strand>
        <mrna_strand>GAAAATGGAATTCTCAACTTTCCATCCCTCAACATGGAATTCTTTTTTCACCTCTCCTCTCCTCTTTCCCTATCAGTTCATTCCTGAGAATTATGTTCACTGGAGAGAGACCCCTGAATCTCACATATACTCTGCTGATCTTCCAG..................................................................................................................GTGTGAAGAAAGAGGAAATAAAGGTGGAAGTTGAGGATTCAAGCTACCTGATAATAAGAACTGAAGCAGCCAATGAAACAACAGAGCCAATAAGGAGCTTTATGAGGAAATTTAGGCTACCTGGAATGGTGGATATGGATGGAATTTCTGCTAGTTATAGAGATGGTGTTTTGACAGTCACAGTTCCAAGAACACTTGTGAGAAGGGGATTTTTCATTGAACCAGATGACTTGACAGAAAGCATAGTGAATCTTGGTGCTAGTGCTGCTTGATTATTTTTGCTTCCAAACAAGATTTGGTTGATATTGATACCTAATCTTATTATTATTTTTGGGTTTAGGGAGAGGGATTTCAAGATTGTGCTCTCTTTGAGATTATGTACATAAGTTAGATCAGTGGTAATCCTTAAACTGAATTTGCTGTTATTTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E393111" ref_strand="+" ref_description="SGN-E393111 	[TUS-38-D3]">
      <seq>gaaaatggaattctcaactttccatccctcaacatggaattcttttttcacctctcctctcctctttccctatcagttcattcctgagaattatgttcactggagagagacccctgaatctcacatatactctgctgatcttccaggtgtgaagaaagaggaaataaaggtggaagttgaggattcaagctacctgataataagaactgaagcagccaatgaaacaacagagccaataaggagctttatgaggaaatttaggctacctggaatggtggatatggatggaatttctgctagttatagagatggtgttttgacagtcacagttccaagaacacttgtgagaaggggatttttcattgaaccagatgacttgacagaaagcatagtgaatcttggtgctagtgctgcttgattatttttgcttccaaacaagatttggttgatattgatacctaatcttattattatttttgggtttagggagagggatttcaagattgtgctctctttgagattatgtacataagttagatcattggtaatccttaaactgaatttgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="26864" stop="25582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26564" g_stop="26419" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26418" i_stop="26305" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26304" g_stop="25882" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="569" r_length="423" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E393111" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26564" e_stop="26419"/>
          <exon e_start="26304" e_stop="25882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGGAATTCTCAACTTTCCATCCCTCAACATGGAATTCTTTTTTCACCTCTCCTCTCCTCTTTCCCTATCAGTTCATTCCTGAGAATTATGTTCACTGGAGAGAGACCCCTGAATCTCACATATACTCTGCTGATCTTCCAGGTAAACACACACACACATAAAAAAGAACAGTTGAAGTGACTCTTTTTTGGACACCCTTTTTTTTTTGTATTGGGTATTAATTTTCTTGAAGTTTGGATGTTTTTGTTTTGACAGGTGTGAAGAAAGAGGAAATAAAGGTGGAAGTTGAGGATTCAAGCTACCTGATAATAAGAACTGAAGCAGCCAATGAAACAACAGAGCCAATAAGGAGCTTTATGAGGAAATTTAGGCTACCTGGAATGGTGGATATGGATGGAATTTCTGCTAGTTATAGAGATGGTGTTTTGACAGTCACAGTTCCAAGAACACTTGTGAGAAGGGGATTTTTCATTGAACCAGATGACTTGACAGAAAGCATAGTGAATCTTGGTGCTAGTGCTGCTTGATTATTTTTGCTTCCAAACAAGATTTGGTTGATATTGATACCTAATCTTATTATTATTTTTGGGTTTAGGGAGAGGGATTTCAAGATTGTGCTCTCTTTGAGATTATGTACATAAGTTAGATCAGTGGTAATCCTTAAACTGAATTTGCTGT</genome_strand>
        <mrna_strand>GAAAATGGAATTCTCAACTTTCCATCCCTCAACATGGAATTCTTTTTTCACCTCTCCTCTCCTCTTTCCCTATCAGTTCATTCCTGAGAATTATGTTCACTGGAGAGAGACCCCTGAATCTCACATATACTCTGCTGATCTTCCAG..................................................................................................................GTGTGAAGAAAGAGGAAATAAAGGTGGAAGTTGAGGATTCAAGCTACCTGATAATAAGAACTGAAGCAGCCAATGAAACAACAGAGCCAATAAGGAGCTTTATGAGGAAATTTAGGCTACCTGGAATGGTGGATATGGATGGAATTTCTGCTAGTTATAGAGATGGTGTTTTGACAGTCACAGTTCCAAGAACACTTGTGAGAAGGGGATTTTTCATTGAACCAGATGACTTGACAGAAAGCATAGTGAATCTTGGTGCTAGTGCTGCTTGATTATTTTTGCTTCCAAACAAGATTTGGTTGATATTGATACCTAATCTTATTATTATTTTTGGGTTTAGGGAGAGGGATTTCAAGATTGTGCTCTCTTTGAGATTATGTACATAAGTTAGATCATTGGTAATCCTTAAACTGAATTTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E374425" ref_strand="+" ref_description="SGN-E374425 	[TUS-38-D2]">
      <seq>aaaatggaattctcaactttccatccctcaacatggaattcttttttcacctctcctctcctctttccctatcagttcattcctgagaattatgttcactggagagagacccctgaatctcacatatactctgctgatcttccaggtgtgaagaaagaggaaataaaggtggaagttgaggattcaagctacctgataataagaactgaagcagccaatgaaacaacagagccaataaggagctttatgaggaaatttaggctacctggaatggtggatatggatggaatttctgctagttatagagatggtgttttgacagtcacagttccaagaacacttgtgagaaggggatttttcattgaaccagatgacttgacagaaagcatagtgaatcttggtgctagtgctgcttgattatttttgcttccaaacaagatttggttgatattgatacctaatcttattattatttttgggtttagggagagggatttcaagattgtgctctctttgagattatgtacataaagttagatcagtggtaatccttcaactgaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="26863" stop="25586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26563" g_stop="26419" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26418" i_stop="26305" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26304" g_stop="25886" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="565" r_length="420" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E374425" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26563" e_stop="26419"/>
          <exon e_start="26304" e_stop="25886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGAATTCTCAACTTTCCATCCCTCAACATGGAATTCTTTTTTCACCTCTCCTCTCCTCTTTCCCTATCAGTTCATTCCTGAGAATTATGTTCACTGGAGAGAGACCCCTGAATCTCACATATACTCTGCTGATCTTCCAGGTAAACACACACACACATAAAAAAGAACAGTTGAAGTGACTCTTTTTTGGACACCCTTTTTTTTTTGTATTGGGTATTAATTTTCTTGAAGTTTGGATGTTTTTGTTTTGACAGGTGTGAAGAAAGAGGAAATAAAGGTGGAAGTTGAGGATTCAAGCTACCTGATAATAAGAACTGAAGCAGCCAATGAAACAACAGAGCCAATAAGGAGCTTTATGAGGAAATTTAGGCTACCTGGAATGGTGGATATGGATGGAATTTCTGCTAGTTATAGAGATGGTGTTTTGACAGTCACAGTTCCAAGAACACTTGTGAGAAGGGGATTTTTCATTGAACCAGATGACTTGACAGAAAGCATAGTGAATCTTGGTGCTAGTGCTGCTTGATTATTTTTGCTTCCAAACAAGATTTGGTTGATATTGATACCTAATCTTATTATTATTTTTGGGTTTAGGGAGAGGGATTTCAAGATTGTGCTCTCTTTGAGATTATGTACAT-AAGTTAGATCAGTGGTAATCCTTAAACTGAATTTG</genome_strand>
        <mrna_strand>AAAATGGAATTCTCAACTTTCCATCCCTCAACATGGAATTCTTTTTTCACCTCTCCTCTCCTCTTTCCCTATCAGTTCATTCCTGAGAATTATGTTCACTGGAGAGAGACCCCTGAATCTCACATATACTCTGCTGATCTTCCAG..................................................................................................................GTGTGAAGAAAGAGGAAATAAAGGTGGAAGTTGAGGATTCAAGCTACCTGATAATAAGAACTGAAGCAGCCAATGAAACAACAGAGCCAATAAGGAGCTTTATGAGGAAATTTAGGCTACCTGGAATGGTGGATATGGATGGAATTTCTGCTAGTTATAGAGATGGTGTTTTGACAGTCACAGTTCCAAGAACACTTGTGAGAAGGGGATTTTTCATTGAACCAGATGACTTGACAGAAAGCATAGTGAATCTTGGTGCTAGTGCTGCTTGATTATTTTTGCTTCCAAACAAGATTTGGTTGATATTGATACCTAATCTTATTATTATTTTTGGGTTTAGGGAGAGGGATTTCAAGATTGTGCTCTCTTTGAGATTATGTACATAAAGTTAGATCAGTGGTAATCCTTCAACTGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E205242" ref_strand="+" ref_description="SGN-E205242 	[cLEC-25-D1]">
      <seq>aaacacctccctagcagccatcattttttcctcctaaatcctcttctttcttccaagaaaatggaattctcaactttccatccctcaacatggaattcttttttcacctctcctctcctctttccctatcagttcattcctgagaattatgttcactggagagagacccctgaatctcacatatactctgctgatcttccaggtgtgaagaaagaggaaataaaggtggaagttgaggattcaagctacctgataataagaactgaagcagccaatgaaacaacagagccaataaggagctttatgaggaaatttaggctacctggaatggtggatatggatggaatttctgctagttatagagatggtgttttgacagtcacagttccaagaacacttgtgagaaggggatttttcattgaaccagatgacttgacagaaagcatagtgaatcttggtgctagtgctgcttgattatttttgcttccaaacaagatttggttgatattgatacctaatcttattattatttttgggtttagggagagggatttcaagattgtgctctctttgagattatgtacataagttagatcagtggtaatccttaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="26920" stop="25592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26620" g_stop="26419" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26418" i_stop="26305" i_length="114">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26304" g_stop="25892" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="615" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E205242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26620" e_stop="26419"/>
          <exon e_start="26304" e_stop="25892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACCTCCCTAGCAGCCATCATTTTTTCCTCCTAAATCCTCTTCTTTCTTCCAAGAAAATGGAATTCTCAACTTTCCATCCCTCAACATGGAATTCTTTTTTCACCTCTCCTCTCCTCTTTCCCTATCAGTTCATTCCTGAGAATTATGTTCACTGGAGAGAGACCCCTGAATCTCACATATACTCTGCTGATCTTCCAGGTAAACACACACACACATAAAAAAGAACAGTTGAAGTGACTCTTTTTTGGACACCCTTTTTTTTTTGTATTGGGTATTAATTTTCTTGAAGTTTGGATGTTTTTGTTTTGACAGGTGTGAAGAAAGAGGAAATAAAGGTGGAAGTTGAGGATTCAAGCTACCTGATAATAAGAACTGAAGCAGCCAATGAAACAACAGAGCCAATAAGGAGCTTTATGAGGAAATTTAGGCTACCTGGAATGGTGGATATGGATGGAATTTCTGCTAGTTATAGAGATGGTGTTTTGACAGTCACAGTTCCAAGAACACTTGTGAGAAGGGGATTTTTCATTGAACCAGATGACTTGACAGAAAGCATAGTGAATCTTGGTGCTAGTGCTGCTTGATTATTTTTGCTTCCAAACAAGATTTGGTTGATATTGATACCTAATCTTATTATTATTTTTGGGTTTAGGGAGAGGGATTTCAAGATTGTGCTCTCTTTGAGATTATGTACATAAGTTAGATCAGTGGTAATCCTTAAACTG</genome_strand>
        <mrna_strand>AAACACCTCCCTAGCAGCCATCATTTTTTCCTCCTAAATCCTCTTCTTTCTTCCAAGAAAATGGAATTCTCAACTTTCCATCCCTCAACATGGAATTCTTTTTTCACCTCTCCTCTCCTCTTTCCCTATCAGTTCATTCCTGAGAATTATGTTCACTGGAGAGAGACCCCTGAATCTCACATATACTCTGCTGATCTTCCAG..................................................................................................................GTGTGAAGAAAGAGGAAATAAAGGTGGAAGTTGAGGATTCAAGCTACCTGATAATAAGAACTGAAGCAGCCAATGAAACAACAGAGCCAATAAGGAGCTTTATGAGGAAATTTAGGCTACCTGGAATGGTGGATATGGATGGAATTTCTGCTAGTTATAGAGATGGTGTTTTGACAGTCACAGTTCCAAGAACACTTGTGAGAAGGGGATTTTTCATTGAACCAGATGACTTGACAGAAAGCATAGTGAATCTTGGTGCTAGTGCTGCTTGATTATTTTTGCTTCCAAACAAGATTTGGTTGATATTGATACCTAATCTTATTATTATTTTTGGGTTTAGGGAGAGGGATTTCAAGATTGTGCTCTCTTTGAGATTATGTACATAAGTTAGATCAGTGGTAATCCTTAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E349860" ref_strand="+" ref_description="SGN-E349860 	[cTOS-3-L9]">
      <seq>tgacatctccttagtattacccaaaaaaccaaagaagaaaggatcatcttttcgcaagctttggagatcctcactgtcaactgaggacttctgtaaaacaatctcggtcgatgatagtggaagattttcaaatggatcaacgtctaatgtggatgttgttttttcagagaatgtaccagctgaaagagcactagcctaccaagattttgtgaatcactgctgctcaggtggcccaagaaatccacacactgctcgagccatgaaaggatgtattgaatggccacgtggaataccgaagcatggtttgaagtccaagcttttggaagctagaattcagagccaaaaatcgcaattgcgcagtgtgcttaaacacttgaattaggtggaaggatggcttcagtttgctggtttaggtaattgtataaacttcatgaatctcacgaactagtagttgaattcacatggtaaagagctgctgtaacagttttgtctcttcattgctgcctcttaagtatttcaatgaacttctagatatcattaaactgtatccaccctaaaattacacgaaatatgttttatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="31322" stop="30141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31022" g_stop="30441" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E349860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31022" e_stop="30441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATCTCCTTAGTATTACCCAAAAAACCAAAGAAGAAAGGATCATCTTTTCGCAAGCTTTGGAGATCCTCACTGTCAACTGAGGACTTCTGTAAAACAATCTCGGTCGATGATAGTGGAAGATTTTCAAATGGATCAACGTCTAATGTGGATGTTGTTTTTTCAGAGAATGTACCAGCTGAAAGAGCACTAGCCTACCAAGATTTTGTGAATCACTGCTGCTCAGGTGGCCCAAGAAATCCACACACTGCTCGAGCCATGAAAGGATGTATTGAATGGCCACGTGGAATACCGAAGCATGGTTTGAAGTCCAAGCTTTTGGAAGCTAGAATTCAGAGCCAAAAATCGCAATTGCGCAGTGTGCTTAAACACTTGAATTAGGTGGAAGGATGGCTTCAGTTTGCTGGTTTAGGTAATTGTATAAACTTCATGAATCTCACGAACTAGTAGTTGAATTCACATGGTAAAGAGCTGCTGTAACAGTTTTGTCTCTTCATTGCTGCCTCTTAAGTATTTCAATGAACTTCTAGATATCATTAAACTGTATCCACCCTAAAATTACACGAAATATGTTTTATTTT</genome_strand>
        <mrna_strand>TGACATCTCCTTAGTATTACCCAAAAAACCAAAGAAGAAAGGATCATCTTTTCGCAAGCTTTGGAGATCCTCACTGTCAACTGAGGACTTCTGTAAAACAATCTCGGTCGATGATAGTGGAAGATTTTCAAATGGATCAACGTCTAATGTGGATGTTGTTTTTTCAGAGAATGTACCAGCTGAAAGAGCACTAGCCTACCAAGATTTTGTGAATCACTGCTGCTCAGGTGGCCCAAGAAATCCACACACTGCTCGAGCCATGAAAGGATGTATTGAATGGCCACGTGGAATACCGAAGCATGGTTTGAAGTCCAAGCTTTTGGAAGCTAGAATTCAGAGCCAAAAATCGCAATTGCGCAGTGTGCTTAAACACTTGAATTAGGTGGAAGGATGGCTTCAGTTTGCTGGTTTAGGTAATTGTATAAACTTCATGAATCTCACGAACTAGTAGTTGAATTCACATGGTAAAGAGCTGCTGTAACAGTTTTGTCTCTTCATTGCTGCCTCTTAAGTATTTCAATGAACTTCTAGATATCATTAAACTGTATCCACCCTAAAATTACACGAAATATGTTTTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E554082" ref_strand="+" ref_description="SGN-E554082 	[cTSC-3-C4]">
      <seq>aaaacatatttcgtgtaattttagggtggatacagtttaatgatatctagaagttcattgaaatacttaagaggcagcaatgaagagacaaaactgttacagcagctctttaccatgtgaattcaactactagttcgtgagattcatgaagtttatacaattacctaaaccagcaaactgaagccatccttccacctaattcaagtgtttaagcacactgcgcaattgcgatttttggctctgaattctagcttccaaaagcttggacttcaaaccatgcttcggtattccacgtggccattcaatacatcctttcatggctcgagcagtgtgtggatttcttgggccacctgagcagcagtgattcacaaaatcttggtaggctagtgctctttcagctggtacattctctgaaaaaacaacatccacattagacgttgatccatttgaaaatcttccactatcatcgaccgagattgttttacagaagtcctcagttgacagtgaggatctccaaagcttgcgaaaagatgatcctttcttctttggttttttgggtaatactaaggagatgtcactagtctcaaaatccagagaaccagattgaccagtgttctgctcatgattcactttgccacataaaagatatctgccccggtcagtacaattgacagaatgctcagtttcaccaacagtataattcgaaaactgaccttcaacttgggtcactgtttctctaccactttcatctttgcaactctgggtcgtgatcaataacgcttttcaaacattcgctgctggtggtcatagcacatgtttttactaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="+" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="30146" stop="31572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30446" g_stop="31272" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="+" ref_id="SGN-E554082" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30446" e_stop="31272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACATATTTCGTGTAATTTTAGGGTGGATACAGTTTAATGATATCTAGAAGTTCATTGAAATACTTAAGAGGCAGCAATGAAGAGACAAAACTGTTACAGCAGCTCTTTACCATGTGAATTCAACTACTAGTTCGTGAGATTCATGAAGTTTATACAATTACCTAAACCAGCAAACTGAAGCCATCCTTCCACCTAATTCAAGTGTTTAAGCACACTGCGCAATTGCGATTTTTGGCTCTGAATTCTAGCTTCCAAAAGCTTGGACTTCAAACCATGCTTCGGTATTCCACGTGGCCATTCAATACATCCTTTCATGGCTCGAGCAGTGTGTGGATTTCTTGGGCCACCTGAGCAGCAGTGATTCACAAAATCTTGGTAGGCTAGTGCTCTTTCAGCTGGTACATTCTCTGAAAAAACAACATCCACATTAGACGTTGATCCATTTGAAAATCTTCCACTATCATCGACCGAGATTGTTTTACAGAAGTCCTCAGTTGACAGTGAGGATCTCCAAAGCTTGCGAAAAGATGATCCTTTCTTCTTTGGTTTTTTGGGTAATACTAAGGAGATGTCACTAGTCTCAAAATCCAGAGAACCAGATTGACCAGTGTTCTGCTCATGATTCACTTTGCCACATAAAAGATATCTGCCCCGGTCAGTACAATTGACAGAATGCTCAGTTTCACCAACAGTATAATTCGAAAACTGACCTTCAACTTGGGTCACTGTTTCTCTACCACTTTCATCTTTGCAACTCT-GGTCGTGATCAATAACGCTATTCAAACATTCGCTGCTGGTGGTCATAGCACATG-TTTTACTAACCT</genome_strand>
        <mrna_strand>AAAACATATTTCGTGTAATTTTAGGGTGGATACAGTTTAATGATATCTAGAAGTTCATTGAAATACTTAAGAGGCAGCAATGAAGAGACAAAACTGTTACAGCAGCTCTTTACCATGTGAATTCAACTACTAGTTCGTGAGATTCATGAAGTTTATACAATTACCTAAACCAGCAAACTGAAGCCATCCTTCCACCTAATTCAAGTGTTTAAGCACACTGCGCAATTGCGATTTTTGGCTCTGAATTCTAGCTTCCAAAAGCTTGGACTTCAAACCATGCTTCGGTATTCCACGTGGCCATTCAATACATCCTTTCATGGCTCGAGCAGTGTGTGGATTTCTTGGGCCACCTGAGCAGCAGTGATTCACAAAATCTTGGTAGGCTAGTGCTCTTTCAGCTGGTACATTCTCTGAAAAAACAACATCCACATTAGACGTTGATCCATTTGAAAATCTTCCACTATCATCGACCGAGATTGTTTTACAGAAGTCCTCAGTTGACAGTGAGGATCTCCAAAGCTTGCGAAAAGATGATCCTTTCTTCTTTGGTTTTTTGGGTAATACTAAGGAGATGTCACTAGTCTCAAAATCCAGAGAACCAGATTGACCAGTGTTCTGCTCATGATTCACTTTGCCACATAAAAGATATCTGCCCCGGTCAGTACAATTGACAGAATGCTCAGTTTCACCAACAGTATAATTCGAAAACTGACCTTCAACTTGGGTCACTGTTTCTCTACCACTTTCATCTTTGCAACTCTGGGTCGTGATCAATAACGCTTTTCAAACATTCGCTGCTGGTGGTCATAGCACATGTTTTTACTAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E328432" ref_strand="+" ref_description="SGN-E328432 	[cTOC-21-B2]">
      <seq>tctcccctgtttcacactcattcataatgcaaatatacacacttaagtctcagccactacaattctacaaactccaaatgggttaaagttttctgttgacaaaaaaaaaataaaaaatgaagatcacagatgggtttgctagttcaattgattgtcagttgactactgatcaccagctgcaccaccgccggaagaaaacaagaactccggtaaagggtggaagtggatcagcctcagccaatcaattcttggtgagtaagtttaatagcccttcgatggaaatggaatgcagaggatttgagttttttaatggtggggcaaagatgggtgtttctgccagaaagctcgccgctggcttgtggcatttggcggcggagttcgactcggctggtggcggttctggcggcatgaagcggcagtgtggttcgattcatccgctcccttgttggataccaatccctaaatctgtgatggagggagctacaaagtgggatcctggccacttcaaaacgtccagagaagtaaatcattccaacaaccttgtaaagctttatgaacgtcaacgtactgctactacctcacttgctcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="33396" stop="31768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33096" g_stop="32660" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32659" i_stop="32222" i_length="438">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.584" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32221" g_stop="32068" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="591" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E328432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33096" e_stop="32660"/>
          <exon e_start="32221" e_stop="32068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCCTGTTTCACACTCATTCATAATGCAAATATACACACTTAAGTCTCAGCCACTACAATTCTACAAACTCCAAATGGGTTAAAGTTTTCTGTTGACAAAAAAAAAATAAAAAATGAAGATCACAGATGGGTTTGCTAGTTCAATTGATTGTCAGTTGACTACTGATCACCAGCTGCACCACCGCCGGAAGAAAACAAGAACTCCGGTAAAGGGTGGAAGTGGATCAGCCTCAGCCAATCAATTCTTGGTGAGTAAGTTTAATAGCCCTTCGATGGAAATGGAATGCAGAGGATTTGAGTTTTTTAATGGTGGGGCAAAGATGGGTGTTTCTGCCAGAAAGCTCGCCGCTGGCTTGTGGCATTTGGCGGCGGAGTTCGACTCGGCTGGTGGCGGTTCTGGCGGCATGAAGCGGCAGTGTGGTTCGATTCATCCGGTAAGTTTTCAGGTGTGATTGAATTAAATATTTTGTTCTTGTTTCCCACAGGTTGTTTGATTGTTGGGGGTGGGGAGGAATTGGATATTCTGCATAATTTAGCACAAGAAAATAAAACTTTTAAGCACTTATTTATAAGCCAAAGAATAAGTGATAAGTTATAAGCGCATCCGAACAGACATGTCTAGGGTATTGATCACCTAATAGTGAGGATGATCTACTAGTAATTGTGAGTTTAATTATTCACAATCAACTTACGTAAAGTAGAAAAGGGAGGAAGGTCACAGATGTTAACCATCTAGAGACAATGAAACTTGTTTCCTTTAACCATCTCGAGGAAGCCAAAACTGAAATTCTAACCATATCTAAATATGTTGTACCGTTTCAAGAAAATCCAGACTTTCTGACCATTTGCATGATTATTTTCGTTGTTGCTAGCTCCCTTGTTGGATACCAATCCCTAAATCTGTGATGGAGGGAGCTACAAAGTGGGATCCTGGCCACTTCAAAACGTCCAGAGAAGTAAATCATTCCAACAACCTTGTAAAGCTTTATGAACGTCAACGTACTGCTACTACCTCACTTGCTCCTG</genome_strand>
        <mrna_strand>TCTCCCCTGTTTCACACTCATTCATAATGCAAATATACACACTTAAGTCTCAGCCACTACAATTCTACAAACTCCAAATGGGTTAAAGTTTTCTGTTGACAAAAAAAAAATAAAAAATGAAGATCACAGATGGGTTTGCTAGTTCAATTGATTGTCAGTTGACTACTGATCACCAGCTGCACCACCGCCGGAAGAAAACAAGAACTCCGGTAAAGGGTGGAAGTGGATCAGCCTCAGCCAATCAATTCTTGGTGAGTAAGTTTAATAGCCCTTCGATGGAAATGGAATGCAGAGGATTTGAGTTTTTTAATGGTGGGGCAAAGATGGGTGTTTCTGCCAGAAAGCTCGCCGCTGGCTTGTGGCATTTGGCGGCGGAGTTCGACTCGGCTGGTGGCGGTTCTGGCGGCATGAAGCGGCAGTGTGGTTCGATTCATCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTTGTTGGATACCAATCCCTAAATCTGTGATGGAGGGAGCTACAAAGTGGGATCCTGGCCACTTCAAAACGTCCAGAGAAGTAAATCATTCCAACAACCTTGTAAAGCTTTATGAACGTCAACGTACTGCTACTACCTCACTTGCTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E373239" ref_strand="+" ref_description="SGN-E373239 	[TUS-31-F5]">
      <seq>gcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgtttaatttgttgctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40234" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39934" g_stop="39866" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39777" g_stop="39121" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="727" r_length="658" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E373239" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39934" e_stop="39866"/>
          <exon e_start="39777" e_stop="39121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTG-TTAATTTGTTGCTATTTACT</genome_strand>
        <mrna_strand>GCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTTAATTTGTTGCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E315183" ref_strand="+" ref_description="SGN-E315183 	[cTOA-24-B4]">
      <seq>tcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40075" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39775" g_stop="39122" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E315183" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39775" e_stop="39122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCTATTTAC</genome_strand>
        <mrna_strand>TCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E552618" ref_strand="+" ref_description="SGN-E552618 	[cTSB-4-H7]">
      <seq>tatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40029" stop="38823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39729" g_stop="39123" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="608" polyA_stop="654"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E552618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39729" e_stop="39123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCTATTTA</genome_strand>
        <mrna_strand>TATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E223406" ref_strand="+" ref_description="SGN-E223406 	[cLEL-14-B8]">
      <seq>tttttttagcaacaaattaacacttggttcataacttaagagggtagctaaaatagtgaaattttacaaacagtacatggaatgtaatgaacatggtcatgtccactacacaaacttacaacaccaagaaactaaaaccatcttattcctactatcatttttcactgttccctcgcatataaatacacaaaggaagggggggaaaagtgataatgagtacaagcacataagaaaaagcaggattgttttagtggagcttgttggcaagattacactgctttctgatctcaccttttgtcccagtaagtggattattctcagaaagaatagtgatggctcttgcaaattccttgaagaaataattttggctttttgccattttctttacatatggcttagtcctcttgtccattgctagttgatgatcaactaacattaaccccttattgtccaatatgttcctgtagtagtttgtgtctagaaccatgggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="+" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="38827" stop="39912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39123" g_stop="39612" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="492" r_length="490" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="+" ref_id="SGN-E223406" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39123" e_stop="39612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATAGCAACAAATTAACACTTGTTTCATAACTTAAGAGGGTAGCTAAAATAGTGAAATTTTACAAACAGTACATGGAATGTAATGAACATGGTCATGTCCACTACACAAACTTACAACACCAAGAAACTAAAACCATCTTATTCCTACTATCATTTTTCACTGTTCCCTCGCATATAAATACACAAAGGAAGGGGGGGAAAAGTGATAATGAGTACAAGCACATAAGAAAAAGCAGGATTGTTTTAGTGGAGCTTGTTGGCAAGATTACACTGCTTTCTGATCTCACCTTTTGTCCCAGTAAGTGGATTATTCTCAGAAAGAATAGTGATGGCTCTTGCAAATTCCTTGAAGAAATAATTTTGGCTTTTTGCCATTTTCTTTACATATGGCTTAGTCCTCTTGTCCATTGCTAGTTGATGATCAACTAACATTAACCCCTTATTGTCCAATATGTTCCTGTAGTAGTTGTTGTCTAGAACCATGGGCG</genome_strand>
        <mrna_strand>TTTTTAGCAACAAATTAACACTTGGTTCATAACTTAAGAGGGTAGCTAAAATAGTGAAATTTTACAAACAGTACATGGAATGTAATGAACATGGTCATGTCCACTACACAAACTTACAACACCAAGAAACTAAAACCATCTTATTCCTACTATCATTTTTCACTGTTCCCTCGCATATAAATACACAAAGGAAGGGGGGGAAAAGTGATAATGAGTACAAGCACATAAGAAAAAGCAGGATTGTTTTAGTGGAGCTTGTTGGCAAGATTACACTGCTTTCTGATCTCACCTTTTGTCCCAGTAAGTGGATTATTCTCAGAAAGAATAGTGATGGCTCTTGCAAATTCCTTGAAGAAATAATTTTGGCTTTTTGCCATTTTCTTTACATATGGCTTAGTCCTCTTGTCCATTGCTAGTTGATGATCAACTAACATTAACCCCTTATTGTCCAATATGTTCCTGTAGTAGTTTGTGTCTAGAACCATGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E222922" ref_strand="+" ref_description="SGN-E222922 	[cLEL-14-B8]">
      <seq>tttttttagcaacaaatttacttttgtttcataacttaagagggtagctaaaatagtgaaattttacaaacagtacatggaatgtaatgaacatggtcatgtccactacacaaacttacaacaccaagaaactaaaaccatcttattcctactatcatttttcactgttccctcgcatataaatacacaaaggaagggggggaaaagtgataatgagtacaagcacataagaaaaagcaggattgttttagtggagcttgttggcaagattacactgctttctgatctcaccttttgtcccagtaagtggattattctcagaaagaatagtgatggctcttgcaaattccttgaagaaataattttggctttttgccattttctttacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="+" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="38827" stop="39813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39123" g_stop="39513" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="393" r_length="391" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="+" ref_id="SGN-E222922" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39123" e_stop="39513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATAGCAACAAATTAACACTTGTTTCATAACTTAAGAGGGTAGCTAAAATAGTGAAATTTTACAAACAGTACATGGAATGTAATGAACATGGTCATGTCCACTACACAAACTTACAACACCAAGAAACTAAAACCATCTTATTCCTACTATCATTTTTCACTGTTCCCTCGCATATAAATACACAAAGGAAGGGGGGGAAAAGTGATAATGAGTACAAGCACATAAGAAAAAGCAGGATTGTTTTAGTGGAGCTTGTTGGCAAGATTACACTGCTTTCTGATCTCACCTTTTGTCCCAGTAAGTGGATTATTCTCAGAAAGAATAGTGATGGCTCTTGCAAATTCCTTGAAGAAATAATTTTGGCTTTTTGCCATTTTCTTTACATATG</genome_strand>
        <mrna_strand>TTTTTAGCAACAAATTTACTTTTGTTTCATAACTTAAGAGGGTAGCTAAAATAGTGAAATTTTACAAACAGTACATGGAATGTAATGAACATGGTCATGTCCACTACACAAACTTACAACACCAAGAAACTAAAACCATCTTATTCCTACTATCATTTTTCACTGTTCCCTCGCATATAAATACACAAAGGAAGGGGGGGAAAAGTGATAATGAGTACAAGCACATAAGAAAAAGCAGGATTGTTTTAGTGGAGCTTGTTGGCAAGATTACACTGCTTTCTGATCTCACCTTTTGTCCCAGTAAGTGGATTATTCTCAGAAAGAATAGTGATGGCTCTTGCAAATTCCTTGAAGAAATAATTTTGGCTTTTTGCCATTTTCTTTACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E315252" ref_strand="+" ref_description="SGN-E315252 	[cTOA-24-A4]">
      <seq>tcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40075" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39775" g_stop="39125" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E315252" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39775" e_stop="39125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCTATT</genome_strand>
        <mrna_strand>TCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E551537" ref_strand="+" ref_description="SGN-E551537 	[cTSB-1-A3]">
      <seq>gacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactnatttaactaccctcttaagtatgaaacagtggtaatttgttgctnnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40589" stop="38828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40289" g_stop="40161" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="295" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39777" g_stop="39128" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="943" r_length="648" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="946" polyA_stop="960"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E551537" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40289" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>GACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTNATTTAACTACCCTCTTAAG-TATGAAAC-AGTGGTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E349100" ref_strand="+" ref_description="SGN-E349100 	[cTOS-2-F13]">
      <seq>tttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40031" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39731" g_stop="39128" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E349100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39731" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>TTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E352148" ref_strand="+" ref_description="SGN-E352148 	[cTOS-13-M15]">
      <seq>tcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40010" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39710" g_stop="39128" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="603"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E352148" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39710" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>TCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E352571" ref_strand="+" ref_description="SGN-E352571 	[cTOS-9-P17]">
      <seq>tcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40010" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39710" g_stop="39128" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="584" polyA_stop="602"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E352571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39710" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>TCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E551551" ref_strand="+" ref_description="SGN-E551551 	[cTSB-1-B20]">
      <seq>gtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctnanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39991" stop="38828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39691" g_stop="39128" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="583"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E551551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39691" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>GTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E347671" ref_strand="+" ref_description="SGN-E347671 	[cTOF-26-N14]">
      <seq>ccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39988" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39688" g_stop="39128" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="571"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E347671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39688" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>CCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E355189" ref_strand="+" ref_description="SGN-E355189 	[cTOS-18-B6]">
      <seq>ccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39961" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39661" g_stop="39128" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="535" polyA_stop="544"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E355189" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39661" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>CCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E355396" ref_strand="+" ref_description="SGN-E355396 	[cTOS-25-O11]">
      <seq>ccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39961" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39661" g_stop="39128" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E355396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39661" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>CCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E351880" ref_strand="+" ref_description="SGN-E351880 	[cTOS-8-B21]">
      <seq>tgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39930" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39630" g_stop="39128" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="519"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E351880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39630" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>TGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E352048" ref_strand="+" ref_description="SGN-E352048 	[cTOS-13-F17]">
      <seq>tgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39930" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39630" g_stop="39128" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="519"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E352048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39630" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>TGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E353704" ref_strand="+" ref_description="SGN-E353704 	[cTOS-10-C21]">
      <seq>aacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39895" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39595" g_stop="39128" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="478"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E353704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39595" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>AACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E353890" ref_strand="+" ref_description="SGN-E353890 	[cTOS-10-A10]">
      <seq>aacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39895" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39595" g_stop="39128" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="478"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E353890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39595" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>AACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E355457" ref_strand="+" ref_description="SGN-E355457 	[cTOS-25-C3]">
      <seq>aacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39895" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39595" g_stop="39128" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="469" polyA_stop="478"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E355457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39595" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>AACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E216827" ref_strand="-" ref_description="SGN-E216827 	[cLEL-1-G19]">
      <seq>ctactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39890" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39590" g_stop="39128" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="482"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E216827" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216827" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39590" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>CTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E348813" ref_strand="+" ref_description="SGN-E348813 	[cTOF-29-F13]">
      <seq>gttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgtttaatttgttgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39860" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39560" g_stop="39128" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="435" polyA_stop="446"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E348813" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39560" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTG-TTAATTTGTTGCT</genome_strand>
        <mrna_strand>GTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E340065" ref_strand="+" ref_description="SGN-E340065 	[cTOF-3-H7]">
      <seq>aaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39701" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39401" g_stop="39128" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="275" polyA_stop="284"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E340065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39401" e_stop="39128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</genome_strand>
        <mrna_strand>AAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E350509" ref_strand="+" ref_description="SGN-E350509 	[cTOS-5-M21]">
      <seq>cccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtnaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40251" stop="38829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39951" g_stop="39866" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39777" g_stop="39129" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="735" r_length="649" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E350509" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39951" e_stop="39866"/>
          <exon e_start="39777" e_stop="39129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGC</genome_strand>
        <mrna_strand>CCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTNAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E357636" ref_strand="+" ref_description="SGN-E357636 	[cTOS-24-K23]">
      <seq>tcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40010" stop="38829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39710" g_stop="39129" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E357636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39710" e_stop="39129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGC</genome_strand>
        <mrna_strand>TCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E373238" ref_strand="-" ref_description="SGN-E373238 	[TUS-31-F5]">
      <seq>agcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40235" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39935" g_stop="39866" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39777" g_stop="39131" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="717" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E373238" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373238" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39935" e_stop="39866"/>
          <exon e_start="39777" e_stop="39131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTT</genome_strand>
        <mrna_strand>AGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E238694" ref_strand="-" ref_description="SGN-E238694 	[cLEL-9-G11]">
      <seq>catatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39813" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39513" g_stop="39131" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="405"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E238694" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238694" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39513" e_stop="39131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTT</genome_strand>
        <mrna_strand>CATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E239050" ref_strand="-" ref_description="SGN-E239050 	[cLEL-9-G11]">
      <seq>ggtgattatttcttcaaggtatttgcagaagccatcactattctttctgagaataatccgcttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgttgcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39783" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39487" g_stop="39131" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="379"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E239050" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239050" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39487" e_stop="39131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTT</genome_strand>
        <mrna_strand>GGTGATTATTTCTTCAAGGTATTTGCAGAAGCCATCACTATTCTTTCTGAGAATAATCCGCTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E397530" ref_strand="-" ref_description="SGN-E397530 	[TUS-45-N6]">
      <seq>accgtttattatccagaagtagaccctcaattgaacccagagcatgtaccacacatggtcatgaagtgtcgtgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactattacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattattttttcaaggaatttgcaagagccatcactattctttttgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccattaaaacaatcctgctttttgttatgtggttgtactcattatcacttttcccccccttcctttgtgtatttatatgggagggaacagtgaaaaatgatagtaggaataagatggttttagttttttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaacaagtgttaatttgtgataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40035" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39735" g_stop="39134" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="607" polyA_stop="627"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E397530" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397530" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39735" e_stop="39134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTTTAT-ATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTT</genome_strand>
        <mrna_strand>ACCGTTTATTATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGGTCATGAAGTGTCGTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTATTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTTTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTTTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCATTAAAACAATCCTGCTTTTTGTTATGTGGTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGGGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTTTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E300295" ref_strand="+" ref_description="SGN-E300295 	[cLEW-17-A22]">
      <seq>taacacttgtttcataacttaagagggtagctaaaatagtgaaattttacaaacagtacatgggaggtaatgaacatggtcatgtccactacacaaacttacaacaccaagaaactaaaaccatcttattcctactatcatttttcactgttccctcgcatataaatacacaaaggaagggggggaaaagtgataatgagtacaagcacataagaaaaagcaggattgttttagtggagcttgttggcaagattacactgctttctgatctcaccttttgtcccagtaagtggattattctcagaaagaatagtgatggctcttgcaaattccttgaagaaataattttggctttttgccattttctttacatatggcttagtcctcttgtccattgctagttgatgatcaactaacattaaccccttattgtccaatatgttcctgtagtagttgttgtctagaaccatgggcgtgcctctgtcatttctcacatattgcacagcctttgggtctggaattggatcaggacacttcttgagcatgtgtggtacatgctctgggttcaattgagggtctacttctggatataaacggtgtaccaacttcacacagtgtgttcgacccacactgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="+" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="38838" stop="40074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39138" g_stop="39774" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="+" ref_id="SGN-E300295" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39138" e_stop="39774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTTGTTTCATAACTTAAGAGGGTAGCTAAAATAGTGAAATTTTACAAACAGTACATGGAATGTAATGAACATGGTCATGTCCACTACACAAACTTACAACACCAAGAAACTAAAACCATCTTATTCCTACTATCATTTTTCACTGTTCCCTCGCATATAAATACACAAAGGAAGGGGGGGAAAAGTGATAATGAGTACAAGCACATAAGAAAAAGCAGGATTGTTTTAGTGGAGCTTGTTGGCAAGATTACACTGCTTTCTGATCTCACCTTTTGTCCCAGTAAGTGGATTATTCTCAGAAAGAATAGTGATGGCTCTTGCAAATTCCTTGAAGAAATAATTTTGGCTTTTTGCCATTTTCTTTACATATGGCTTAGTCCTCTTGTCCATTGCTAGTTGATGATCAACTAACATTAACCCCTTATTGTCCAATATGTTCCTGTAGTAGTTGTTGTCTAGAACCATGGGCGTGCCTCTGTCATTTCTCACATATTGCACAGCCTTTGGGTCTGGAATTGGATCAGGACACTTCTTGAGCATGTGTGGTACATGCTCTGGGTTCAATTGAGGGTCTACTTCTGGATATAAACGGTGTACCAACTTCACACAGTGTGTTCGACCCACACTGTGTG</genome_strand>
        <mrna_strand>TAACACTTGTTTCATAACTTAAGAGGGTAGCTAAAATAGTGAAATTTTACAAACAGTACATGGGAGGTAATGAACATGGTCATGTCCACTACACAAACTTACAACACCAAGAAACTAAAACCATCTTATTCCTACTATCATTTTTCACTGTTCCCTCGCATATAAATACACAAAGGAAGGGGGGGAAAAGTGATAATGAGTACAAGCACATAAGAAAAAGCAGGATTGTTTTAGTGGAGCTTGTTGGCAAGATTACACTGCTTTCTGATCTCACCTTTTGTCCCAGTAAGTGGATTATTCTCAGAAAGAATAGTGATGGCTCTTGCAAATTCCTTGAAGAAATAATTTTGGCTTTTTGCCATTTTCTTTACATATGGCTTAGTCCTCTTGTCCATTGCTAGTTGATGATCAACTAACATTAACCCCTTATTGTCCAATATGTTCCTGTAGTAGTTGTTGTCTAGAACCATGGGCGTGCCTCTGTCATTTCTCACATATTGCACAGCCTTTGGGTCTGGAATTGGATCAGGACACTTCTTGAGCATGTGTGGTACATGCTCTGGGTTCAATTGAGGGTCTACTTCTGGATATAAACGGTGTACCAACTTCACACAGTGTGTTCGACCCACACTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E300264" ref_strand="+" ref_description="SGN-E300264 	[cLEW-17-A11]">
      <seq>taacacttgtttcataacttaagagggtagctaaaatagtgaaattttacaaacagtacatggaatgtaatgaacatggtcatgtccactacacaaacttacaacaccaagaaactaaaaccatcttattcctactatcatttttcactgttccctcgcatataaatacacaaaggaagggggggaaaagtgataatgagtacaagcacataagaaaaagcaggattgttttagtggagcttgttggcaagattacactgctttctgatctcaccttttgtcccagtaagtggattattctcagaaagaatagtgatggctcttgcaaattccttgaagaaataattttggctttttgccattttctttacatatggcttagtcctcttgtccattgctagttgatgatcaactaacattaaccccttattgtccaatatgttcctgtagtagttgttgtctagaaccatgggcgtgcctctgtcatttctcacatattgcacagcctttgggtctggaattggatcaagacacttcttgagcatgtgtggtacatgctctgggttcaattgagggtctacttctggatataaacggtgtaccaacttcacacagtgtgttcgacccacactgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="+" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="38838" stop="40074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39138" g_stop="39774" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="+" ref_id="SGN-E300264" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39138" e_stop="39774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACACTTGTTTCATAACTTAAGAGGGTAGCTAAAATAGTGAAATTTTACAAACAGTACATGGAATGTAATGAACATGGTCATGTCCACTACACAAACTTACAACACCAAGAAACTAAAACCATCTTATTCCTACTATCATTTTTCACTGTTCCCTCGCATATAAATACACAAAGGAAGGGGGGGAAAAGTGATAATGAGTACAAGCACATAAGAAAAAGCAGGATTGTTTTAGTGGAGCTTGTTGGCAAGATTACACTGCTTTCTGATCTCACCTTTTGTCCCAGTAAGTGGATTATTCTCAGAAAGAATAGTGATGGCTCTTGCAAATTCCTTGAAGAAATAATTTTGGCTTTTTGCCATTTTCTTTACATATGGCTTAGTCCTCTTGTCCATTGCTAGTTGATGATCAACTAACATTAACCCCTTATTGTCCAATATGTTCCTGTAGTAGTTGTTGTCTAGAACCATGGGCGTGCCTCTGTCATTTCTCACATATTGCACAGCCTTTGGGTCTGGAATTGGATCAGGACACTTCTTGAGCATGTGTGGTACATGCTCTGGGTTCAATTGAGGGTCTACTTCTGGATATAAACGGTGTACCAACTTCACACAGTGTGTTCGACCCACACTGTGTG</genome_strand>
        <mrna_strand>TAACACTTGTTTCATAACTTAAGAGGGTAGCTAAAATAGTGAAATTTTACAAACAGTACATGGAATGTAATGAACATGGTCATGTCCACTACACAAACTTACAACACCAAGAAACTAAAACCATCTTATTCCTACTATCATTTTTCACTGTTCCCTCGCATATAAATACACAAAGGAAGGGGGGGAAAAGTGATAATGAGTACAAGCACATAAGAAAAAGCAGGATTGTTTTAGTGGAGCTTGTTGGCAAGATTACACTGCTTTCTGATCTCACCTTTTGTCCCAGTAAGTGGATTATTCTCAGAAAGAATAGTGATGGCTCTTGCAAATTCCTTGAAGAAATAATTTTGGCTTTTTGCCATTTTCTTTACATATGGCTTAGTCCTCTTGTCCATTGCTAGTTGATGATCAACTAACATTAACCCCTTATTGTCCAATATGTTCCTGTAGTAGTTGTTGTCTAGAACCATGGGCGTGCCTCTGTCATTTCTCACATATTGCACAGCCTTTGGGTCTGGAATTGGATCAAGACACTTCTTGAGCATGTGTGGTACATGCTCTGGGTTCAATTGAGGGTCTACTTCTGGATATAAACGGTGTACCAACTTCACACAGTGTGTTCGACCCACACTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E349080" ref_strand="+" ref_description="SGN-E349080 	[cTOS-2-K16]">
      <seq>tcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40010" stop="38844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39710" g_stop="39140" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E349080" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39710" e_stop="39140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGT</genome_strand>
        <mrna_strand>TCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E349444" ref_strand="+" ref_description="SGN-E349444 	[cTOS-1-H10]">
      <seq>ctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39966" stop="38844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39666" g_stop="39140" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E349444" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39666" e_stop="39140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGT</genome_strand>
        <mrna_strand>CTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E551692" ref_strand="+" ref_description="SGN-E551692 	[cTSB-1-I22]">
      <seq>gagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgtttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40553" stop="38844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40253" g_stop="40161" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="259" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39777" g_stop="39142" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="896" r_length="637" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E551692" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40253" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATG-TTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGT</genome_strand>
        <mrna_strand>GAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E353315" ref_strand="+" ref_description="SGN-E353315 	[cTOS-15-G23]">
      <seq>ctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40011" stop="38844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39711" g_stop="39144" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E353315" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39711" e_stop="39144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAA</genome_strand>
        <mrna_strand>CTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E350991" ref_strand="-" ref_description="SGN-E350991 	[cTOS-6-E3]">
      <seq>ccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttttgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39955" stop="38844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39655" g_stop="39144" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="531"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E350991" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350991" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39655" e_stop="39144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAA</genome_strand>
        <mrna_strand>CCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTTTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E352344" ref_strand="-" ref_description="SGN-E352344 	[cTOS-9-I4]">
      <seq>caggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggtctaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39884" stop="38844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39584" g_stop="39144" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="442" polyA_stop="461"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E352344" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352344" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39584" e_stop="39144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAA</genome_strand>
        <mrna_strand>CAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGTCTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E234176" ref_strand="-" ref_description="SGN-E234176 	[cLEL-8-E4]">
      <seq>aggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39883" stop="38844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39583" g_stop="39144" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="451"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E234176" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234176" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39583" e_stop="39144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAA</genome_strand>
        <mrna_strand>AGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E234104" ref_strand="-" ref_description="SGN-E234104 	[cLEL-8-E4]">
      <seq>acttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39628" stop="38844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39328" g_stop="39144" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="186" polyA_stop="196"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E234104" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234104" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39328" e_stop="39144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAA</genome_strand>
        <mrna_strand>ACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E352061" ref_strand="+" ref_description="SGN-E352061 	[cTOS-13-L17]">
      <seq>actattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaccctcttaagttatgaagaacaagaaatgactatcaatggctcgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39751" stop="38843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39451" g_stop="39148" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E352061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39451" e_stop="39148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAA</genome_strand>
        <mrna_strand>ACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E232175" ref_strand="-" ref_description="SGN-E232175 	[cLEL-5-J19]">
      <seq>catatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcacaattctttctgagaataatccacttgctgggacaaaaggtgagatcagaaatcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39813" stop="38865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39513" g_stop="39165" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="366"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E232175" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232175" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39513" e_stop="39165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTA</genome_strand>
        <mrna_strand>CATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACAATTCTTTCTGAGAATAATCCACTTGCTGGGACAAAAGGTGAGATCAGAAATCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E200411" ref_strand="+" ref_description="SGN-E200411 	[cLEC-1-K9]">
      <seq>gctaaaatagggaaattttacaaacagtacatggaatggaatgaacatgggcatgtccactacacaaacttacaacaccaagaaactaaaaccatcttattcctactatcatttttcactggtccctcgcatataaatacacaaaggaagggggggaaaagtgataatgagtacaagcacataagaaaaagcaggattgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="+" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="38867" stop="39669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39167" g_stop="39369" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="+" ref_id="SGN-E200411" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39167" e_stop="39369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAAATAGTGAAATTTTACAAACAGTACATGGAATGTAATGAACATGGTCATGTCCACTACACAAACTTACAACACCAAGAAACTAAAACCATCTTATTCCTACTATCATTTTTCACTGTTCCCTCGCATATAAATACACAAAGGAAGGGGGGGAAAAGTGATAATGAGTACAAGCACATAAGAAAAAGCAGGATTGTTTT</genome_strand>
        <mrna_strand>GCTAAAATAGGGAAATTTTACAAACAGTACATGGAATGGAATGAACATGGGCATGTCCACTACACAAACTTACAACACCAAGAAACTAAAACCATCTTATTCCTACTATCATTTTTCACTGGTCCCTCGCATATAAATACACAAAGGAAGGGGGGGAAAAGTGATAATGAGTACAAGCACATAAGAAAAAGCAGGATTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E232675" ref_strand="-" ref_description="SGN-E232675 	[cLEL-5-J19]">
      <seq>ttaatgttagttgatcatcaactagcaatgaccaagaggattaagccatatgtaaagaaaatggcaaaaaagccaaaattatttcttcaagaattttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttcccccccttcctttgtgtatttatatgcgagggaacagtgaaaaatgatagtaggaataagatggttttagtttcttggtgttgtaagtttgtgtagtggacatgaccatgttcattacattccatgtactgtttgtaaaatttcactattttagcccccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="39859" stop="38863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39559" g_stop="39169" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="413"/>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E232675" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232675" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39559" e_stop="39169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGC-AAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTA</genome_strand>
        <mrna_strand>TTAATGTTAGTTGATCATCAACTAGCAATGACCAAGAGGATTAAGCCATATGTAAAGAAAATGGCAAAAAAGCCAAAATTATTTCTTCAAGAATTTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E551965" ref_strand="+" ref_description="SGN-E551965 	[cTSB-2-G22]">
      <seq>gagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcccttttcccccccttcctttgtgtatttatatgcgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40553" stop="38991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40253" g_stop="40161" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="259" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39777" g_stop="39291" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="746" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E551965" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40253" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGG</genome_strand>
        <mrna_strand>GAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCCCTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E213637" ref_strand="+" ref_description="SGN-E213637 	[cLEC-76-E22]">
      <seq>gttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgagaataatccacttactgggacaaaaggtgagatcagaaagcagtgtaatcttgccaacaagctccactaaaacaatcctgctttttcttatgtgcttgtactcattatcacttttccccccccttcccttgtgtatttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40514" stop="38996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40214" g_stop="40161" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="220" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39777" g_stop="39296" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="703" r_length="483" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E213637" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40214" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTT-CCCCCCCTTCCTTTGTGTATTTATATG</genome_strand>
        <mrna_strand>GTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCCTTCCCTTGTGTATTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E553885" ref_strand="+" ref_description="SGN-E553885 	[cTSC-2-I22]">
      <seq>gagactattcaagaaggctgtacaaagggagtgccctggaagttgtttcttgtgctgatattcttgtgttatctggtagagatggtattgttgctctaggagggccactcattcctctcaaaactggaagaagagatggaagaaaaagcagagctgacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattgtacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggctataagccaaaattatttcttcaaggaatttgcaagagccatcactattctttctgataataatccacttactgggactaaaggtgagatcaaaaagcattgtaatcttgctcacaaactccactaaaacaatcctgctttttcttatgagcttgtactcattatgacttttccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40553" stop="39016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40253" g_stop="40161" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="261" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39777" g_stop="39316" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="723" r_length="462" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E553885" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40253" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTATTAAAGAA-GCTGTAGAAAGGGAGTGCCCTGG-TGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCC</genome_strand>
        <mrna_strand>GAGACTATTCAAGAAGGCTGTACAAAGGGAGTGCCCTGGAAGTTGTTTCTTGTGCTGATATTCTTGTGTTATCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACTCATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCTGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGTACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCTATAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGATAATAATCCACTTACTGGGACTAAAGGTGAGATCAAAAAGCATTGTAATCTTGCTCACAAACTCCACTAAAACAATCCTGCTTTTTCTTATGAGCTTGTACTCATTATGACTTTTCCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E290362" ref_strand="+" ref_description="SGN-E290362 	[cLES-20-E6]">
      <seq>gcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaactagcaatggacaagaggactaagccatatgtaaagaaaatggcaaaaagccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40234" stop="39185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39934" g_stop="39866" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39777" g_stop="39485" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="362" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E290362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39934" e_stop="39866"/>
          <exon e_start="39777" e_stop="39485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAA</genome_strand>
        <mrna_strand>GCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E301275" ref_strand="+" ref_description="SGN-E301275 	[cLEW-24-N15]">
      <seq>aaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccatatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacaactactacaggaacatattggacaataaggggttaatgttagttgatcatcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40959" stop="39238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40659" g_stop="40442" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="407" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39894" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="545" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39893" i_stop="39596" i_length="298">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39595" g_stop="39538" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="603" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E301275" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40659" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39894"/>
          <exon e_start="39595" e_stop="39538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAAC</genome_strand>
        <mrna_strand>AAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCATATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATC..........................................................................................................................................................................................................................................................................................................AACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E322003" ref_strand="+" ref_description="SGN-E322003 	[cTOB-29-J21]">
      <seq>aacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaagcacgcccatggttctagacaacaactactacaggaacatattggacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40947" stop="39267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40647" g_stop="40442" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="395" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="561" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39567" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="772" r_length="211" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E322003" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40647" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAA</genome_strand>
        <mrna_strand>AACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAAGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E337671" ref_strand="+" ref_description="SGN-E337671 	[cTOE-17-H11]">
      <seq>tcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaattccagacccaaaggctgtgcaatatgtgagaaatgacagaggcacgcccatggttctagacaacaactactacaggaacatattggacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40649" stop="39267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="355" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39777" g_stop="39567" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="566" r_length="211" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E337671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAA</genome_strand>
        <mrna_strand>TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E316331" ref_strand="+" ref_description="SGN-E316331 	[cTOA-25-K13]">
      <seq>taaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacaccccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatggctcaagaagtgtcctgatccaattccagaccccaaagctgtgcaatatgtgagaaatgacagaagcacgcccatggttctagacaacaactacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40961" stop="39285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40661" g_stop="40442" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="409" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="576" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39585" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="770" r_length="194" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E316331" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40661" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACA-CCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACAT-GCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTA</genome_strand>
        <mrna_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCCAAAGCTGTGCAATATGTGAGAAATGACAGAAGCACGCCCATGGTTCTAGACAACAACTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E577765" ref_strand="+" ref_description="SGN-E577765 	[LE15DA04]">
      <seq>agtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaaagtgtctgatccaattccagacccaaaggctgtgcaatatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40963" stop="39329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40663" g_stop="40442" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="411" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="577" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39629" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="726" r_length="149" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E577765" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40663" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAG-AAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTG</genome_strand>
        <mrna_strand>AGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAAGTGT-CTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E328038" ref_strand="+" ref_description="SGN-E328038 	[cTOC-22-E20]">
      <seq>agcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagacccctcattgaaccagagcatgtaccacacatgctcaagaagtgtcctgatccaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40968" stop="39356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40668" g_stop="40442" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="416" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="582" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39656" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="703" r_length="121" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E328038" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40668" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATT</genome_strand>
        <mrna_strand>AGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCCTCATTGAA-CCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E327861" ref_strand="+" ref_description="SGN-E327861 	[cTOC-22-E21]">
      <seq>agcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccnacacatgctcaagaagtgtcctgatccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40968" stop="39357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40668" g_stop="40442" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="416" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="582" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39657" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="704" r_length="122" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E327861" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40668" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACC-ACACATGCTCAAGAAGTGTCCTGATCCAAT</genome_strand>
        <mrna_strand>AGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCNACACATGCTCAAGAAGTGTCCTGATCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E214037" ref_strand="+" ref_description="SGN-E214037 	[cLEC-80-A17]">
      <seq>aaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaacccagagcatgtaccacacatgctcaagaagtgtcctgatccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40965" stop="39357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40665" g_stop="40442" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="413" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="579" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39657" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="700" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E214037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40665" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAAT</genome_strand>
        <mrna_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E322010" ref_strand="+" ref_description="SGN-E322010 	[cTOB-29-N1]">
      <seq>ccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagacccctcattgaacccagagcatgtaccacacatgctcaagaagtgtcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40950" stop="39363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40650" g_stop="40442" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="398" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="564" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39663" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="679" r_length="115" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E322010" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40650" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGA</genome_strand>
        <mrna_strand>CCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCCTCATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E342411" ref_strand="+" ref_description="SGN-E342411 	[cTOF-8-K3]">
      <seq>aaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatggagtgttgttcttgaaagatttgctaacattggaatcaacacccctggnagttgttgccttgctagggtcacacagtngtgggtcgaacacactgtgtgaaagttggtacaccgtttatatcccagaagtagaccctcaattgaacccagagcatgtaccacacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40965" stop="39378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40665" g_stop="40442" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="413" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="581" r_length="168" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39678" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="684" r_length="103" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E342411" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40665" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39678"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCAT-GAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGG-AGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGT-GTGGGTCGAACACACTGTGTG-AAGTTGGTACACCGTTTATAT-CCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCT</genome_strand>
        <mrna_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGNAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTNGTGGGTCGAACACACTGTGTGAAAGTTGGTACACCGTTTATATCCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E214279" ref_strand="+" ref_description="SGN-E214279 	[cLEC-77-B2]">
      <seq>aaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggtacaccgtttatatccagaagtagaccctcaattgaaaccagagcatgtaccacacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40948" stop="39380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40648" g_stop="40442" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="396" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="562" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39680" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="660" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E214279" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40648" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATG</genome_strand>
        <mrna_strand>AAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAAACCAGAGCATGTACCACACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E213948" ref_strand="+" ref_description="SGN-E213948 	[cLEC-80-O1]">
      <seq>gtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacaccccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaagttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40962" stop="39438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40662" g_stop="40442" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="410" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="577" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39738" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="617" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E213948" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40662" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACA-CCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGT</genome_strand>
        <mrna_strand>GTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E246209" ref_strand="+" ref_description="SGN-E246209 	[cLEF-40-L16]">
      <seq>aaagtaaaatggctaccaaacatctttttttntttcctcttctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaactttttttcaaacgcccccagaatactggatttttttggctttgaaacatattacatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40965" stop="39443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40665" g_stop="40442" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="0.90"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="413" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="579" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39743" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="614" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E246209" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40665" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGAAG</genome_strand>
        <mrna_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTNTTTCCTCTTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTTTTTTCAAACGCCCCCAGAATACTGGATTTTTTTGGCTTTGAAACATATTACATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E250582" ref_strand="+" ref_description="SGN-E250582 	[cLEG-7-C17]">
      <seq>taaaatggctaccaaacatctttatttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctaaccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcatacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40961" stop="39445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40661" g_stop="40442" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="409" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="575" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39745" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="608" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E250582" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40661" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTGA</genome_strand>
        <mrna_strand>TAAAATGGCTACCAAACATCTTTATTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAACCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCATACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E303299" ref_strand="+" ref_description="SGN-E303299 	[cLEX-2-C11]">
      <seq>caaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacactgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40966" stop="39446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40666" g_stop="40442" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="414" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="580" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39746" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="612" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E303299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40666" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACTGTGTG</genome_strand>
        <mrna_strand>CAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E304255" ref_strand="+" ref_description="SGN-E304255 	[cLEX-6-L6]">
      <seq>tttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40971" stop="39451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40671" g_stop="40442" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="419" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="585" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39751" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="612" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E304255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40671" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACACT</genome_strand>
        <mrna_strand>TTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E336929" ref_strand="+" ref_description="SGN-E336929 	[cTOE-5-E9]">
      <seq>tttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgctagggtcacacagtgtgggtcgaacacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40971" stop="39452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40671" g_stop="40442" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="419" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39866" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="585" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88">
            <donor d_prob="0.469" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39777" g_stop="39752" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="611" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E336929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40671" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39866"/>
          <exon e_start="39777" e_stop="39752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAGGTACTATAGCCAACACGACATTGAACAAAATTGCTCTCAGTTAATAGTTTGGGTCTAAACAATATTTAATCTGGTGTTGTTTGAACAGGGTCACACAGTGTGGGTCGAACACAC</genome_strand>
        <mrna_strand>TTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG........................................................................................GGTCACACAGTGTGGGTCGAACACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E334627" ref_strand="+" ref_description="SGN-E334627 	[cTOD-23-K4]">
      <seq>tttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacaccccctggagttgttgccttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40941" stop="39567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40641" g_stop="40442" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="389" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39867" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="555" r_length="166" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E334627" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40641" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACA-CCCCTGGAGTTGTTGCCTTGCTA</genome_strand>
        <mrna_strand>TTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCCTGGAGTTGTTGCCTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E328032" ref_strand="+" ref_description="SGN-E328032 	[cTOC-22-C6]">
      <seq>gaaagaggtcattttctttgaggacattttaggcactttctcccattatttaagaaggtatctaagtgatcatccaaagaacaacctctactgaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacnatgaaagcatgagtgttgttcttgaaagatttgctaacattggaaatcacacccctggagttgntgccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="41068" stop="39569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40768" g_stop="40442" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="516" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39869" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="679" r_length="163" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E328032" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40768" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGGTCATTTTCTTTGAGGACATTTTAGGCACTTTCTCCCATTATTTAAGAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGC</genome_strand>
        <mrna_strand>GAAAGAGGTCATTTTCTTTGAGGACATTTTAGGCACTTTCTCCCATTATTTAAGAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACNATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAAATCACACCCCTGGAGTTGNTGCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E206175" ref_strand="+" ref_description="SGN-E206175 	[cLEC-29-E9]">
      <seq>tttagcattttaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcaccttccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagttgttgccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40961" stop="39569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40671" g_stop="40442" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="419" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39869" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="582" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E206175" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40671" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGC</genome_strand>
        <mrna_strand>TTTAGCATTTTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTTCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E317114" ref_strand="+" ref_description="SGN-E317114 	[cTOA-27-B4]">
      <seq>aacaacctctactgaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctangangggcacacattcctctcaaactggaagaagagatggaagaaaagcagagcagacattctttgacagcacctcccagatcacaatgaaagcatgagtgttgttcttngaagatttgctaacattgggatcaacacccctggagttgttgccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40989" stop="39570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40689" g_stop="40442" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="437" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39870" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="597" r_length="160" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E317114" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40689" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTG</genome_strand>
        <mrna_strand>AACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTANGANGGGCACACATTCCTCTC-AAACTGGAAGAAGAGATGGAAG-AAAAGCAGAGCAGACATTCTTTGACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTNGAAGATTTGCTAACATTGGGATCAACACCCCTGGAGTTGTTGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E213328" ref_strand="+" ref_description="SGN-E213328 	[cLEC-71-H4]">
      <seq>ccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagtttgtgccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40974" stop="39570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40674" g_stop="40442" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="422" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39870" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="584" r_length="162" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E213328" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40674" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTG</genome_strand>
        <mrna_strand>CCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTTGTGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E321148" ref_strand="+" ref_description="SGN-E321148 	[cTOB-13-F11]">
      <seq>taaaatggctaccaaaccatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccctggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40961" stop="39580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40661" g_stop="40442" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="410" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39880" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="562" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E321148" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40661" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCTACCAAA-CATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGT</genome_strand>
        <mrna_strand>TAAAATGGCTACCAAACCATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E204004" ref_strand="+" ref_description="SGN-E204004 	[cLEC-22-I15]">
      <seq>acaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttggttcttgagctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctcacattggaatcaacacccctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40823" stop="39581"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40523" g_stop="40442" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="271" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39881" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="422" r_length="151" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E204004" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40523" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAG</genome_strand>
        <mrna_strand>ACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGGTTCTTGAGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTCACATTGGAATCAACACCCCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E213892" ref_strand="+" ref_description="SGN-E213892 	[cLEC-76-J6]">
      <seq>aaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctanganggccacacattcctctcnaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgntcttgaaagatttgctaacattggaaatcacacccctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40965" stop="39583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40665" g_stop="40442" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="413" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39883" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="562" r_length="149" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E213892" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40665" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGG</genome_strand>
        <mrna_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTANGANGGCCACACATTCCTCTCNAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGNTCTTGAAAGATTTGCTAACATTGGAAATCACACCCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E291613" ref_strand="+" ref_description="SGN-E291613 	[cLET-6-D12]">
      <seq>tgcagaggaaaatcctagccttgtaatggactattacaaggacactcgcgctctagctgaacaaattatcttacagcatgatatacttctctacacacgccacaagaatactgaattttcttggctaagaaacatattccatgactggtttgttgagtcatgtgatgcttgcttgctgctggactcaacacggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagcgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgggcagcacctcccagatcacaatgaaagcatgagtcgtggtcttgaaagatttgctaacattggaatcaacacccctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40898" stop="39583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40598" g_stop="40442" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="346" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39883" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="495" r_length="149" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E291613" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40598" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGG</genome_strand>
        <mrna_strand>TGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTCGCGCTCTAGCTGAACAAATTATCTTACAGCATGATATACTTCTCTACACACGCCACAAGAATACTGAATTTTCTTGGCTAAGAAACATATTCCATGACTGGTTTGTTGAG............................................................................................TCATGTGATGCTTGCTTGCTGCTGGACTCAACACGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGCGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGGGCAGCACCTCCCAGATCACAATGAAAGCATGAGTCGTGGTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E302484" ref_strand="+" ref_description="SGN-E302484 	[cLEW-27-L24]">
      <seq>aaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttgaaagatttgctaacattggaatcaacacccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40965" stop="39585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40665" g_stop="40442" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="413" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39885" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="560" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E302484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40665" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCT</genome_strand>
        <mrna_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E209978" ref_strand="+" ref_description="SGN-E209978 	[cLEC-40-A14]">
      <seq>tgctattctcttgaattcagctgcctctgttattgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaataaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctgctgttgtttcttgtgctgatattcttgagttgnctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagccgagcagacattcttgaacagcacctcccagatcacaatgaaagcatgagtgttgttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40931" stop="39617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40631" g_stop="40442" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="379" r_length="189" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39917" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="494" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E209978" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40631" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTG</genome_strand>
        <mrna_strand>TGCTATTCTCTTGAATTCAGCTGCCTCTGTTATTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAATAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGCTGTTGTTTCTTGTGCTGATATTCTTGAGTTGNCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCCGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E303131" ref_strand="+" ref_description="SGN-E303131 	[cLEX-5-A14]">
      <seq>agcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccaaatcacaatgaaagcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40968" stop="39628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40668" g_stop="40442" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="416" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39928" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="520" r_length="104" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E303131" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40668" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAG</genome_strand>
        <mrna_strand>AGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAAATCACAATGAAAGCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E294474" ref_strand="+" ref_description="SGN-E294474 	[cLET-14-H18]">
      <seq>taaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgctccttgttgctggactcaacaaggaggatgcttctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40961" stop="39629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40661" g_stop="40442" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="407" r_length="187" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39929" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="510" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E294474" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40661" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGA</genome_strand>
        <mrna_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGC-TCCTTGTTGCTGGACTCAACAAGGAGGATGCT-TCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E294475" ref_strand="+" ref_description="SGN-E294475 	[cLET-14-H18]">
      <seq>taaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgctccttgttgctggactcaacaaggaggatgcttctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacagcacctcccagatcacaatgaaagcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40961" stop="39629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40661" g_stop="40442" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="407" r_length="187" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39929" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="510" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E294475" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40661" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGA</genome_strand>
        <mrna_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGC-TCCTTGTTGCTGGACTCAACAAGGAGGATGCT-TCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E315878" ref_strand="+" ref_description="SGN-E315878 	[cTOA-26-E8]">
      <seq>tttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgaggtactaaaaaaaatgaaactttcttttcatttttagacaccctttttggagatgttgaatttactgttcttttttttttatttttaaatacagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctgtaagttgttactttgtagtagatctggacttgtttatgtatttttgagaagcttagatatttggttctgaaaagtggtttagttaaatattgcttgtactatatgtataatggtgtcttgtacatagctaggagggccacacattcctctcaaactggaagaagagatggaagaaaaagcagagcagacattcttgaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40971" stop="39657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40671" g_stop="39957" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E315878" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40671" e_stop="39957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTC-TTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAG</genome_strand>
        <mrna_strand>TTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACT-ATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTC-AAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E213068" ref_strand="+" ref_description="SGN-E213068 	[cLEC-72-P9]">
      <seq>gcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagacattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40967" stop="39663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40667" g_stop="40442" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="415" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39963" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="484" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E213068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40667" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTT</genome_strand>
        <mrna_strand>GCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E341478" ref_strand="+" ref_description="SGN-E341478 	[cTOE-23-D13]">
      <seq>caacctctactgaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaagcagagcagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40987" stop="39668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40687" g_stop="40442" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="435" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39968" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="499" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E341478" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40687" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACA</genome_strand>
        <mrna_strand>CAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E310344" ref_strand="+" ref_description="SGN-E310344 	[cTOA-1-O23]">
      <seq>taaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40961" stop="39679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40661" g_stop="40442" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="409" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39979" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="462" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E310344" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40661" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAG</genome_strand>
        <mrna_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E302408" ref_strand="+" ref_description="SGN-E302408 	[cLEW-27-L12]">
      <seq>agtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaagaagagatggaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40963" stop="39680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40663" g_stop="40442" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="411" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39980" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="463" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E302408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40663" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAA</genome_strand>
        <mrna_strand>AGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E267603" ref_strand="+" ref_description="SGN-E267603 	[cLEI-8-H21]">
      <seq>tctcccattatttaagaaggtatctaagtgatcatccaaagaacaacctctactgaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaagagggccacacattcctctcaaaactggaagaagagatggaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="41030" stop="39681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40730" g_stop="40442" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="478" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39981" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="529" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E267603" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40730" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCCATTATTTAAGAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAA</genome_strand>
        <mrna_strand>TCTCCCATTATTTAAGAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAAGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E312804" ref_strand="+" ref_description="SGN-E312804 	[cTOA-8-P24]">
      <seq>tttttgcataggaaaatcctagccttgtaatggactattgcaaggacacttgccctcaagctgaanaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctatgagggccacacattcctttcaaaactggaagaagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40902" stop="39689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40602" g_stop="40442" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="350" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39989" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="393" r_length="43" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E312804" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40602" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATG</genome_strand>
        <mrna_strand>TTTTTGCATAGGAAAATCCTAGCCTTGTAATGGACTATTGCAAGGACACTTGCCCTCAAGCTGAANAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTATGAGGGCCACACATTCCTTTCAAAACTGGAAGAAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E271053" ref_strand="+" ref_description="SGN-E271053 	[cLEM-22-L2]">
      <seq>aacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctatgagggccacacattcctctcaaaactggaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40947" stop="39694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40647" g_stop="40442" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="395" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39994" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="433" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E271053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40647" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAG</genome_strand>
        <mrna_strand>AACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTATGAGGGCCACACATTCCTCTCAAAACTGGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E267942" ref_strand="+" ref_description="SGN-E267942 	[cLEI-12-L24]">
      <seq>aaagaacaacctctactgaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaggagggccacacattcctctcaaaactggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40993" stop="39697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40693" g_stop="40442" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="441" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="39997" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="476" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E267942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40693" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="39997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAG</genome_strand>
        <mrna_strand>AAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E336769" ref_strand="+" ref_description="SGN-E336769 	[cTOE-5-P18]">
      <seq>ccatttagcaaagtaaaagggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgatgctctaggagggccacacattcctctcaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40974" stop="39701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40674" g_stop="40442" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="422" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="40001" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="453" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E336769" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40674" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="40001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTG</genome_strand>
        <mrna_strand>CCATTTAGCAAAGTAAAAGGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGATGCT.................................................................................................................................CTAGGAGGGCCACACATTCCTCTCAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E337237" ref_strand="+" ref_description="SGN-E337237 	[cTOE-7-E12]">
      <seq>catttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctctaagagggccacacattcctctcaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40973" stop="39701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40673" g_stop="40442" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40161" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="421" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129">
            <donor d_prob="0.861" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40031" g_stop="40001" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="452" r_length="31" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E337237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40673" e_stop="40442"/>
          <exon e_start="40349" e_stop="40161"/>
          <exon e_start="40031" e_stop="40001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTG</genome_strand>
        <mrna_strand>CATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT.................................................................................................................................CTAAGAGGGCCACACATTCCTCTCAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E322568" ref_strand="+" ref_description="SGN-E322568 	[cTOB-26-H12]">
      <seq>aaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctgtaagttgttactttgtagtagatctggacttgtttatgtatttttgagaagcttagatatttggttctgaaaagtgggttagttaaatattgcttgtactaatatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40959" stop="39751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40659" g_stop="40442" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40051" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="517" r_length="299" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E322568" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40659" e_stop="40442"/>
          <exon e_start="40349" e_stop="40051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTAT</genome_strand>
        <mrna_strand>AAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGGTTAGTTAAATATTGCTTGTACTAATATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E208577" ref_strand="+" ref_description="SGN-E208577 	[cLEC-39-H22]">
      <seq>gaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtattgttgctgtaagttgttactttgtagtagatctggacttgtttatgtatttttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40976" stop="39812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40676" g_stop="40442" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40112" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="473" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E208577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40676" e_stop="40442"/>
          <exon e_start="40349" e_stop="40112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAG</genome_strand>
        <mrna_strand>GACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E327853" ref_strand="+" ref_description="SGN-E327853 	[cTOC-22-C9]">
      <seq>gaaagaggacattttctttgaggacattttatgcactttctcccattatttaacaaggtatctaagtgatcatccaaagaacaacctctactgaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaattcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcgacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgggttgtctggtaaagatggtattgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="41068" stop="39863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40768" g_stop="40442" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40163" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="514" r_length="187" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E327853" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40768" e_stop="40442"/>
          <exon e_start="40349" e_stop="40163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGGTCATTTTCTTTGAGGACATTTTAGGCACTTTCTCCCATTATTTAAGAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTG</genome_strand>
        <mrna_strand>GAAAGAGGACATTTTCTTTGAGGACATTTTATGCACTTTCTCCCATTATTTAACAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAATTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCGACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGGGTTGTCTGGTAAAGATGGTATTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E307825" ref_strand="+" ref_description="SGN-E307825 	[cLEY-20-E14]">
      <seq>aaagaacaacctctactgaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattcttgtgttgtctggtagagatggtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40993" stop="39867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40693" g_stop="40442" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40167" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="435" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E307825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40693" e_stop="40442"/>
          <exon e_start="40349" e_stop="40167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATT</genome_strand>
        <mrna_strand>AAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E203817" ref_strand="+" ref_description="SGN-E203817 	[cLEC-17-L20]">
      <seq>gaaaatcctaaccttgtcatggactattacaaggacacttgccctcaagctgaaaaaatcatcaaagaacaagtcaaacttctctacaaaccccacaaaaatactgcattttcttggctaagaaacatattccatgactgctttggtgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcacatacattgagactattaaagaagctgtagaaagggagtgccctggggttgcttcttgggctgatattcttgggttgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40891" stop="39881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40591" g_stop="40442" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40181" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="319" r_length="169" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E203817" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40591" e_stop="40442"/>
          <exon e_start="40349" e_stop="40181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTG</genome_strand>
        <mrna_strand>GAAAATCCTAACCTTGTCATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAAAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACCCCACAAAAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGGTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCACATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGGGTTGCTTCTTGGGCTGATATTCTTGGGTTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E277736" ref_strand="+" ref_description="SGN-E277736 	[cLEL-5-K12]">
      <seq>gcacgagcaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagcctcccaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggacgttgtttcttgtgctgatattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40953" stop="39890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40656" g_stop="40442" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40190" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="376" r_length="161" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E277736" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40656" e_stop="40442"/>
          <exon e_start="40349" e_stop="40190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGG-TGTTGTTTCTTGTGCTGATATTCTTG</genome_strand>
        <mrna_strand>GCACGAGCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTCCCAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGACGTTGTTTCTTGTGCTGATATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E337905" ref_strand="+" ref_description="SGN-E337905 	[cTOE-14-O20]">
      <seq>taaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40961" stop="39891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40661" g_stop="40442" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40191" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="379" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E337905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40661" e_stop="40442"/>
          <exon e_start="40349" e_stop="40191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTT</genome_strand>
        <mrna_strand>TAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E200410" ref_strand="+" ref_description="SGN-E200410 	[cLEC-1-K9]">
      <seq>atggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttggttcttgtgctgatattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40957" stop="39891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40657" g_stop="40442" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40191" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="375" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E200410" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40657" e_stop="40442"/>
          <exon e_start="40349" e_stop="40191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTT</genome_strand>
        <mrna_strand>ATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGGTTCTTGTGCTGATATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E201508" ref_strand="+" ref_description="SGN-E201508 	[cLEC-4-F5]">
      <seq>gaccatttagcaaagtaaaagggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccctggtgttgtttcttgtgctgatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40976" stop="39892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40676" g_stop="40442" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40192" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="393" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E201508" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40676" e_stop="40442"/>
          <exon e_start="40349" e_stop="40192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCT</genome_strand>
        <mrna_strand>GACCATTTAGCAAAGTAAAAGGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E309958" ref_strand="+" ref_description="SGN-E309958 	[cTOA-4-E3]">
      <seq>tttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagctttggtatgagaaatttcagatacattgagactattaaagaagctgtagaaagggagtgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40971" stop="39918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40671" g_stop="40442" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40218" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="362" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E309958" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40671" e_stop="40442"/>
          <exon e_start="40349" e_stop="40218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCT</genome_strand>
        <mrna_strand>TTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGCTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E211184" ref_strand="+" ref_description="SGN-E211184 	[cLEC-70-O24]">
      <seq>tcatccaaagaacaacctctactgaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaatttcagatacattgagactattaaagaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40999" stop="39936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40699" g_stop="40442" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40236" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="372" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E211184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40699" e_stop="40442"/>
          <exon e_start="40349" e_stop="40236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCT</genome_strand>
        <mrna_strand>TCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E336324" ref_strand="+" ref_description="SGN-E336324 	[cTOE-10-H13]">
      <seq>aaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgttgctggactcaacaaggaggatgctgtctgagaaagagacagacaggagttttggtatgagaaaattcagatacattgagactattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40965" stop="39942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40665" g_stop="40442" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40242" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="332" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E336324" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40665" e_stop="40442"/>
          <exon e_start="40349" e_stop="40242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAA</genome_strand>
        <mrna_strand>AAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAAATTCAGATACATTGAGACTATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E397413" ref_strand="+" ref_description="SGN-E397413 	[TUS-45-N5]">
      <seq>gtaaaatggctaccaaatatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgctccttgttgctggactcaacaaggaggatgcttctgagaaagagacagacaggagttttggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40962" stop="39972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40662" g_stop="40442" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40272" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="297" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E397413" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40662" e_stop="40442"/>
          <exon e_start="40349" e_stop="40272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATG</genome_strand>
        <mrna_strand>GTAAAATGGCTACCAAATATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGC-TCCTTGTTGCTGGACTCAACAAGGAGGATGCT-TCTGAGAAAGAGACAGACAGGAGTTTTGGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E297010" ref_strand="+" ref_description="SGN-E297010 	[cLEW-6-D5]">
      <seq>agcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgcttccttgctgctggactcaacaaggcggatgctgtctgagaaagagacagacaggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40968" stop="39981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40668" g_stop="40442" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40281" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="296" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E297010" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40668" e_stop="40442"/>
          <exon e_start="40349" e_stop="40281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGT</genome_strand>
        <mrna_strand>AGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCTTCCTTGCTGCTGGACTCAACAAGGCGGATGCTGTCTGAGAAAGAGACAGACAGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E201299" ref_strand="+" ref_description="SGN-E201299 	[cLEC-4-E1]">
      <seq>ccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttggtttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaacttctctacaaacgccacaagaatactgcattttcttggctaagaaacatattccatgactgctttgttgagtcatgtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40974" stop="40142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40674" g_stop="40442" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40349" g_stop="40338" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="245" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E201299" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40674" e_stop="40442"/>
          <exon e_start="40349" e_stop="40338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCT</genome_strand>
        <mrna_strand>CCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGGTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG............................................................................................TCATGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5MJKxE/sgn_ests_tomato" ref_id="SGN-E208482" ref_strand="+" ref_description="SGN-E208482 	[cLEC-39-G21]">
      <seq>gaccatttagcaaagtaaaatggctaccaaacatctttttttctttgctattctcttgttttcagctgcctctgtttttgcagaggaaaatcctagccttgtaatggactattacaaggacacttgccctcaagctgaagaaatcatcaaagaacaagtcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-vPMej/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0008E03.1" temp_strand="-" temp_description="C02SLm0008E03.1  submitted_to_sgn_as:C02Mbo0008E03">
        <position start="40976" stop="40213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40676" g_stop="40513" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0008E03.1" gen_strand="-" ref_id="SGN-E208482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0008E03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40676" e_stop="40513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAAC</genome_strand>
        <mrna_strand>GACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>127</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="82" PGL_stop="544"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82" e_stop="544"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="82" e_stop="544" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82" stop="544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGTAGAAATTCTTCCTTCAGCTCTTGTGCTGTACATCCTGCGAAAACTGCCTCCAAAAAGAGTGTCTGCACAATACCACCCAATCAGTTAGCTGCAGCAGAATTTTATCGTTAGTGATACACGTTCCCATGGTTTCTGTTGCAGAAGCTAACTGGAGTTGTTCAGGAAAAGTGAAACTGCAAAAGGATATTCGGTTGCAATAATTCTGCGGAAAGGCAAAGATTCAACGCTTTTTTGGCAGTTGTTAAAACAGAGGTTAAGCTGTTTTGCTTACATTATATTGTTTCTGTGGTTTTAGTGTGAAGCATGAGACAAATAAGTGTTCCCCACGTCTGTGAAAAATCCTAGTCATGATGTAATGACGCAGAGGGTAAATCTCAGTATCGCCATTGTACTGGCATGTTGTAACTATGATGTTCTGGATCTCCTTTACTGCAATGACTGATGTCCTTTGTTTGGTC</gDNA_template>
            <first_frame> L  V  E  I  L  P  S  A  L  V  L  Y  I  L  R  K  L  P  P  K  R  V  S  A  Q  Y  H  P  I  S  *  L  Q  Q  N  F  I  V  S  D  T  R  S  H  G  F  C  C  R  S  *  L  E  L  F  R  K  S  E  T  A  K  G  Y  S  V  A  I  I  L  R  K  G  K  D  S  T  L  F  W  Q  L  L  K  Q  R  L  S  C  F  A  Y  I  I  L  F  L  W  F  *  C  E  A  *  D  K  *  V  F  P  T  S  V  K  N  P  S  H  D  V  M  T  Q  R  V  N  L  S  I  A  I  V  L  A  C  C  N  Y  D  V  L  D  L  L  Y  C  N  D  *  C  P  L  F  G  </first_frame>
            <second_frame>  W  *  K  F  F  L  Q  L  L  C  C  T  S  C  E  N  C  L  Q  K  E  C  L  H  N  T  T  Q  S  V  S  C  S  R  I  L  S  L  V  I  H  V  P  M  V  S  V  A  E  A  N  W  S  C  S  G  K  V  K  L  Q  K  D  I  R  L  Q  *  F  C  G  K  A  K  I  Q  R  F  F  G  S  C  *  N  R  G  *  A  V  L  L  T  L  Y  C  F  C  G  F  S  V  K  H  E  T  N  K  C  S  P  R  L  *  K  I  L  V  M  M  *  *  R  R  G  *  I  S  V  S  P  L  Y  W  H  V  V  T  M  M  F  W  I  S  F  T  A  M  T  D  V  L  C  L  V </second_frame>
            <third_frame>   G  R  N  S  S  F  S  S  C  A  V  H  P  A  K  T  A  S  K  K  S  V  C  T  I  P  P  N  Q  L  A  A  A  E  F  Y  R  *  *  Y  T  F  P  W  F  L  L  Q  K  L  T  G  V  V  Q  E  K  *  N  C  K  R  I  F  G  C  N  N  S  A  E  R  Q  R  F  N  A  F  L  A  V  V  K  T  E  V  K  L  F  C  L  H  Y  I  V  S  V  V  L  V  *  S  M  R  Q  I  S  V  P  H  V  C  E  K  S  *  S  *  C  N  D  A  E  G  K  S  Q  Y  R  H  C  T  G  M  L  *  L  *  C  S  G  S  P  L  L  Q  *  L  M  S  F  V  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89" stop="286"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFFLQLLCCTSCENCLQKECLHNTTQSVSCSRILSLVIHVPMVSVAEANWSCSGKVKLQKDIRLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="891" PGL_stop="89"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="891" e_stop="89"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="891" e_stop="89" e_length="803"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="891" stop="205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="537" stop="89"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCGTTTAATGAGGATTGTTGTGTAACCTCAATTATATACATAAAAATAAAGCTGTTAAAGAACAATGCATGCAGCAAAAATGTTTCGGAGAACTGCAAAATGAATGTTTTCTATCATCAGTTCACCATATTTTGTATGACGAATCAGTTTTGCACCCAAAGTTGTGTAATTGTTGCCGTTAATTGGAAATAACTCCGTGCCCCAAGGGCTTCGAGTGAGTAGTACAAGCAGCATCGTGTGATATGTTGATTAGCGAGTAAACCTGTTACCGACCCGGATTTTGAACCATCTGTAACTGAATCTTTAGAATTCCTCGGTTCTAAGAGTAAAATTACTAGAACAAACTGACCAAACAAAGGACATCAGTCATTGCAGTAAAGGAGATCCAGAACATCATAGTTACAACATGCCAGTACAATGGCGATACTGAGATTTACCCTCTGCGTCATTACATCATGACTAGGATTTTTCACAGACGTGGGGAACACTTATTTGTCTCATGCTTCACACTAAAACCACAGAAACAATATAATGTAAGCAAAACAGCTTAACCTCTGTTTTAACAACTGCCAAAAAAGCGTTGAATCTTTGCCTTTCCGCAGAATTATTGCAACCGAATATCCTTTTGCAGTTTCACTTTTCCTGAACAACTCCAGTTAGCTTCTGCAACAGAAACCATGGGAACGTGTATCACTAACGATAAAATTCTGCTGCAGCTAACTGATTGGGTGGTATTGTGCAGACACTCTTTTTGGAGGCAGTTTTCGCAGGATGTACAGCACAAGAGCTGAAGGAAGAATTT</gDNA_template>
            <first_frame> G  V  *  *  G  L  L  C  N  L  N  Y  I  H  K  N  K  A  V  K  E  Q  C  M  Q  Q  K  C  F  G  E  L  Q  N  E  C  F  L  S  S  V  H  H  I  L  Y  D  E  S  V  L  H  P  K  L  C  N  C  C  R  *  L  E  I  T  P  C  P  K  G  F  E  *  V  V  Q  A  A  S  C  D  M  L  I  S  E  *  T  C  Y  R  P  G  F  *  T  I  C  N  *  I  F  R  I  P  R  F  *  E  *  N  Y  *  N  K  L  T  K  Q  R  T  S  V  I  A  V  K  E  I  Q  N  I  I  V  T  T  C  Q  Y  N  G  D  T  E  I  Y  P  L  R  H  Y  I  M  T  R  I  F  H  R  R  G  E  H  L  F  V  S  C  F  T  L  K  P  Q  K  Q  Y  N  V  S  K  T  A  *  P  L  F  *  Q  L  P  K  K  R  *  I  F  A  F  P  Q  N  Y  C  N  R  I  S  F  C  S  F  T  F  P  E  Q  L  Q  L  A  S  A  T  E  T  M  G  T  C  I  T  N  D  K  I  L  L  Q  L  T  D  W  V  V  L  C  R  H  S  F  W  R  Q  F  S  Q  D  V  Q  H  K  S  *  R  K  N   </first_frame>
            <second_frame>  A  F  N  E  D  C  C  V  T  S  I  I  Y  I  K  I  K  L  L  K  N  N  A  C  S  K  N  V  S  E  N  C  K  M  N  V  F  Y  H  Q  F  T  I  F  C  M  T  N  Q  F  C  T  Q  S  C  V  I  V  A  V  N  W  K  *  L  R  A  P  R  A  S  S  E  *  Y  K  Q  H  R  V  I  C  *  L  A  S  K  P  V  T  D  P  D  F  E  P  S  V  T  E  S  L  E  F  L  G  S  K  S  K  I  T  R  T  N  *  P  N  K  G  H  Q  S  L  Q  *  R  R  S  R  T  S  *  L  Q  H  A  S  T  M  A  I  L  R  F  T  L  C  V  I  T  S  *  L  G  F  F  T  D  V  G  N  T  Y  L  S  H  A  S  H  *  N  H  R  N  N  I  M  *  A  K  Q  L  N  L  C  F  N  N  C  Q  K  S  V  E  S  L  P  F  R  R  I  I  A  T  E  Y  P  F  A  V  S  L  F  L  N  N  S  S  *  L  L  Q  Q  K  P  W  E  R  V  S  L  T  I  K  F  C  C  S  *  L  I  G  W  Y  C  A  D  T  L  F  G  G  S  F  R  R  M  Y  S  T  R  A  E  G  R  I  </second_frame>
            <third_frame>   R  L  M  R  I  V  V  *  P  Q  L  Y  T  *  K  *  S  C  *  R  T  M  H  A  A  K  M  F  R  R  T  A  K  *  M  F  S  I  I  S  S  P  Y  F  V  *  R  I  S  F  A  P  K  V  V  *  L  L  P  L  I  G  N  N  S  V  P  Q  G  L  R  V  S  S  T  S  S  I  V  *  Y  V  D  *  R  V  N  L  L  P  T  R  I  L  N  H  L  *  L  N  L  *  N  S  S  V  L  R  V  K  L  L  E  Q  T  D  Q  T  K  D  I  S  H  C  S  K  G  D  P  E  H  H  S  Y  N  M  P  V  Q  W  R  Y  *  D  L  P  S  A  S  L  H  H  D  *  D  F  S  Q  T  W  G  T  L  I  C  L  M  L  H  T  K  T  T  E  T  I  *  C  K  Q  N  S  L  T  S  V  L  T  T  A  K  K  A  L  N  L  C  L  S  A  E  L  L  Q  P  N  I  L  L  Q  F  H  F  S  *  T  T  P  V  S  F  C  N  R  N  H  G  N  V  Y  H  *  R  *  N  S  A  A  A  N  *  L  G  G  I  V  Q  T  L  F  L  E  A  V  F  A  G  C  T  A  Q  E  L  K  E  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="552" stop="340"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKLTKQRTSVIAVKEIQNIIVTTCQYNGDTEIYPLRHYIMTRIFHRRGEHLFVSCFTLKPQKQYNVSKTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="306" stop="100"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFAFPQNYCNRISFCSFTFPEQLQLASATETMGTCITNDKILLQLTDWVVLCRHSFWRQFSQDVQHKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="8532" PGL_stop="1354"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8532" e_stop="8260"/>
            <exon e_start="7146" e_stop="7047"/>
            <exon e_start="6357" e_stop="6143"/>
            <exon e_start="6047" e_stop="5964"/>
            <exon e_start="2802" e_stop="2749"/>
            <exon e_start="1747" e_stop="1354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8532" e_stop="8260" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8259" i_stop="7147" i_length="1113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7146" e_stop="7047" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.853">
            <gDNA_intron_boundary i_start="7046" i_stop="6358" i_length="689"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6357" e_stop="6143" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.985">
            <gDNA_intron_boundary i_start="6142" i_stop="6048" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6047" e_stop="5964" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5963" i_stop="2803" i_length="3161"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="2802" e_stop="2749" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.988">
            <gDNA_intron_boundary i_start="2748" i_stop="1748" i_length="1001"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="1747" e_stop="1354" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8532" stop="8260"/>
              <exon start="7146" stop="7047"/>
              <exon start="6357" stop="6143"/>
              <exon start="6047" stop="5986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8532" stop="8260"/>
              <exon start="7146" stop="7047"/>
              <exon start="6357" stop="6166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8532" stop="8260"/>
              <exon start="7146" stop="7047"/>
              <exon start="6357" stop="6208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8531" stop="8260"/>
              <exon start="7146" stop="7047"/>
              <exon start="6357" stop="6143"/>
              <exon start="6047" stop="5964"/>
              <exon start="2802" stop="2750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8531" stop="8260"/>
              <exon start="7146" stop="7047"/>
              <exon start="6357" stop="6143"/>
              <exon start="6047" stop="5964"/>
              <exon start="2802" stop="2767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8531" stop="8260"/>
              <exon start="7146" stop="7047"/>
              <exon start="6357" stop="6173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8531" stop="8260"/>
              <exon start="7146" stop="7047"/>
              <exon start="6357" stop="6310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8322" stop="8260"/>
              <exon start="7146" stop="7047"/>
              <exon start="6357" stop="6143"/>
              <exon start="6047" stop="5964"/>
              <exon start="2802" stop="2749"/>
              <exon start="1747" stop="1641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6357" stop="6143"/>
              <exon start="6047" stop="5964"/>
              <exon start="2802" stop="2749"/>
              <exon start="1747" stop="1379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379217" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6344" stop="6143"/>
              <exon start="6047" stop="5964"/>
              <exon start="2802" stop="2749"/>
              <exon start="1747" stop="1354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369435" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6289" stop="6143"/>
              <exon start="6047" stop="5964"/>
              <exon start="2802" stop="2749"/>
              <exon start="1747" stop="1394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549612" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6036" stop="5964"/>
              <exon start="2802" stop="2749"/>
              <exon start="1747" stop="1359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395908" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCGATCACATATATATACATACATACATATTATATACACGTGAGTGTGTATATATATATATATATTAGAAATCCTCGAATTGATCAATTTTCAGATAACCTAGAGGCTTTATCAGTCGGGTTGTTAGGGATTTCTGGGAAGTTTTGTTTTGGGGAAAGTTTGATTAAGCGGAATGGCACAAGCTGTGGAAGAATGGTACAAGCAGATGCCGATTATCACCCGTTCCTACCTCACTGCCGCAATCCTCACCACAATCGGTTGTTCTCTGGAG : ATTATATCTCCTTATAACTTGTACCTGAACCCCAAGTTAGTGGTGAAGCAATACCAGGTGTGGCGCCTGGTTACAAATTTTCTCTACTTTCGGAAGATGG : ACTTGGACTTTCTGTTTCACATGTTTTTCCTAGCTCGGTACTGCAAGCTTCTAGAAGAGAACTCCTTCAGGGGAAGGACGGCAGATTTCTTCTACATGCTCTTGTTTGGTGCCACTGTTTTAACAGGAATTGTTCTTGTCGGGGGGATGATACCTTATGTCTCAGAGTCATTTGCAAGGATCATATTCCTGAGCAATTCATTGACTTTTATGATG : GTTTATGTATGGAGCAAGCAAAATCCATTTATCCACATGAGCTTTTTGGGTCTGTTTACTTTCACCGCAGCTTACCTCCCATGG : GTTCTTTTGGGCTTCTCTGTGCTAGTTGGCGCCAGTGCTTGGGTGGATCTACTG : GGAATGATTGCAGGCCATGCTTATTATTTCCTAGAAGACGTCTATCCGCGAATGACTGGTCGTAGACCCCTGAAAACTCCAGCAGTTATCAAAGCATTGTTTGCTGATGAGCCGGTAGTGGTGGCTCGCCCTGCTAATGTTCGCTTCGCTGCTCCTCCTGTTGATGAAGTTCCACCAAATCAATGAGAGAATTTTATAAGTAAACCAGTGGCTCTGTCTTCAGTTTCTGTAAATTGACCGTAGATATTTGGTTGGAGGAAATCAGGGTTGGTGTTGTTGATGATGATTGTGCTAGTTATTAATGCTTTTTGTAATTTAGATCTGGAACTGGAGAAGTGCTGTCTGGTAGAGAAAATTCGCCTATATGAAGTGTTTTTTCTCTGTTAAAAGTCTT</gDNA_template>
            <first_frame> I  R  S  H  I  Y  T  Y  I  H  I  I  Y  T  *  V  C  I  Y  I  Y  I  L  E  I  L  E  L  I  N  F  Q  I  T  *  R  L  Y  Q  S  G  C  *  G  F  L  G  S  F  V  L  G  K  V  *  L  S  G  M  A  Q  A  V  E  E  W  Y  K  Q  M  P  I  I  T  R  S  Y  L  T  A  A  I  L  T  T  I  G  C  S  L  E  :  I  I  S  P  Y  N  L  Y  L  N  P  K  L  V  V  K  Q  Y  Q  V  W  R  L  V  T  N  F  L  Y  F  R  K  M   : D  L  D  F  L  F  H  M  F  F  L  A  R  Y  C  K  L  L  E  E  N  S  F  R  G  R  T  A  D  F  F  Y  M  L  L  F  G  A  T  V  L  T  G  I  V  L  V  G  G  M  I  P  Y  V  S  E  S  F  A  R  I  I  F  L  S  N  S  L  T  F  M  M  :  V  Y  V  W  S  K  Q  N  P  F  I  H  M  S  F  L  G  L  F  T  F  T  A  A  Y  L  P  W  :  V  L  L  G  F  S  V  L  V  G  A  S  A  W  V  D  L  L  :  G  M  I  A  G  H  A  Y  Y  F  L  E  D  V  Y  P  R  M  T  G  R  R  P  L  K  T  P  A  V  I  K  A  L  F  A  D  E  P  V  V  V  A  R  P  A  N  V  R  F  A  A  P  P  V  D  E  V  P  P  N  Q  *  E  N  F  I  S  K  P  V  A  L  S  S  V  S  V  N  *  P  *  I  F  G  W  R  K  S  G  L  V  L  L  M  M  I  V  L  V  I  N  A  F  C  N  L  D  L  E  L  E  K  C  C  L  V  E  K  I  R  L  Y  E  V  F  F  L  C  *  K  S  </first_frame>
            <second_frame>  S  D  H  I  Y  I  H  T  Y  I  L  Y  T  R  E  C  V  Y  I  Y  I  Y  *  K  S  S  N  *  S  I  F  R  *  P  R  G  F  I  S  R  V  V  R  D  F  W  E  V  L  F  W  G  K  F  D  *  A  E  W  H  K  L  W  K  N  G  T  S  R  C  R  L  S  P  V  P  T  S  L  P  Q  S  S  P  Q  S  V  V  L  W  R :   L  Y  L  L  I  T  C  T  *  T  P  S  *  W  *  S  N  T  R  C  G  A  W  L  Q  I  F  S  T  F  G  R  W  :  T  W  T  F  C  F  T  C  F  S  *  L  G  T  A  S  F  *  K  R  T  P  S  G  E  G  R  Q  I  S  S  T  C  S  C  L  V  P  L  F  *  Q  E  L  F  L  S  G  G  *  Y  L  M  S  Q  S  H  L  Q  G  S  Y  S  *  A  I  H  *  L  L  *  W :   F  M  Y  G  A  S  K  I  H  L  S  T  *  A  F  W  V  C  L  L  S  P  Q  L  T  S  H  G :   F  F  W  A  S  L  C  *  L  A  P  V  L  G  W  I  Y  W :   E  *  L  Q  A  M  L  I  I  S  *  K  T  S  I  R  E  *  L  V  V  D  P  *  K  L  Q  Q  L  S  K  H  C  L  L  M  S  R  *  W  W  L  A  L  L  M  F  A  S  L  L  L  L  L  M  K  F  H  Q  I  N  E  R  I  L  *  V  N  Q  W  L  C  L  Q  F  L  *  I  D  R  R  Y  L  V  G  G  N  Q  G  W  C  C  *  *  *  L  C  *  L  L  M  L  F  V  I  *  I  W  N  W  R  S  A  V  W  *  R  K  F  A  Y  M  K  C  F  F  S  V  K  S  L </second_frame>
            <third_frame>   P  I  T  Y  I  Y  I  H  T  Y  Y  I  H  V  S  V  Y  I  Y  I  Y  I  R  N  P  R  I  D  Q  F  S  D  N  L  E  A  L  S  V  G  L  L  G  I  S  G  K  F  C  F  G  E  S  L  I  K  R  N  G  T  S  C  G  R  M  V  Q  A  D  A  D  Y  H  P  F  L  P  H  C  R  N  P  H  H  N  R  L  F  S  G   : D  Y  I  S  L  *  L  V  P  E  P  Q  V  S  G  E  A  I  P  G  V  A  P  G  Y  K  F  S  L  L  S  E  D  G :   L  G  L  S  V  S  H  V  F  P  S  S  V  L  Q  A  S  R  R  E  L  L  Q  G  K  D  G  R  F  L  L  H  A  L  V  W  C  H  C  F  N  R  N  C  S  C  R  G  D  D  T  L  C  L  R  V  I  C  K  D  H  I  P  E  Q  F  I  D  F  Y  D   : G  L  C  M  E  Q  A  K  S  I  Y  P  H  E  L  F  G  S  V  Y  F  H  R  S  L  P  P  M   : G  S  F  G  L  L  C  A  S  W  R  Q  C  L  G  G  S  T   : G  N  D  C  R  P  C  L  L  F  P  R  R  R  L  S  A  N  D  W  S  *  T  P  E  N  S  S  S  Y  Q  S  I  V  C  *  *  A  G  S  G  G  S  P  C  *  C  S  L  R  C  S  S  C  *  *  S  S  T  K  S  M  R  E  F  Y  K  *  T  S  G  S  V  F  S  F  C  K  L  T  V  D  I  W  L  E  E  I  R  V  G  V  V  D  D  D  C  A  S  Y  *  C  F  L  *  F  R  S  G  T  G  E  V  L  S  G  R  E  N  S  P  I  *  S  V  F  S  L  L  K  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8367" stop="8260"/>
                    <exon start="7146" stop="7047"/>
                    <exon start="6357" stop="6143"/>
                    <exon start="6047" stop="5964"/>
                    <exon start="2802" stop="2749"/>
                    <exon start="1747" stop="1562"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSGMAQAVEEWYKQMPIITRSYLTAAILTTIGCSLEIISPYNLYLNPKLVVKQYQVWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLVGGMIPYVSESFARIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPAVIKALFADEPVVVARPANVRFAAPPVDEVPPNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="22655" PGL_stop="23181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22655" e_stop="23181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22655" e_stop="23181" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22655" stop="23181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304768" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAACTTAAAATACTACTGCAAGCAGTAGTAAAGTTGCAAAGGTGGTGGCGATGTAAATTGCTTCATGCACAGAGAACAAAAGCCACAGTTGTCATCCAATCGCATGTTTTAGGATGGATTGCCTGGAAACGTGCTTCAAACAAGGAACGATTACTTCAAGCAGTATTAAAGTTGCAAAGGTGGTGGAGAAGTAAATTGCTTCATGAACAGAGAACAAAAGCAGCAGTTGTCATCCAATCACATATCCTAGGATGGTTAGTCCGGCAAAGTATTTCAAGAAATAAGGACCAATTACTTCAAGCAACATTGAAGTTGCAAAGGTGGTGGAGAGATAAATTGCTTCATAAACAGAAAACAAAAGCAGCAGTTGTCATCCAATCGCATGTCCAAGGATGGAAAGCTCGACAAAGTGCTTCAAGGAAGAAGCACCTAACGTTGCTAGCAGTATTAAAGTTGCAAAGGTGGTGGAGAGGAAAATTACTTCATAAACAGAGAACAAAATCAGCAGTTGTCATCCAATCGCATG</gDNA_template>
            <first_frame> *  T  *  N  T  T  A  S  S  S  K  V  A  K  V  V  A  M  *  I  A  S  C  T  E  N  K  S  H  S  C  H  P  I  A  C  F  R  M  D  C  L  E  T  C  F  K  Q  G  T  I  T  S  S  S  I  K  V  A  K  V  V  E  K  *  I  A  S  *  T  E  N  K  S  S  S  C  H  P  I  T  Y  P  R  M  V  S  P  A  K  Y  F  K  K  *  G  P  I  T  S  S  N  I  E  V  A  K  V  V  E  R  *  I  A  S  *  T  E  N  K  S  S  S  C  H  P  I  A  C  P  R  M  E  S  S  T  K  C  F  K  E  E  A  P  N  V  A  S  S  I  K  V  A  K  V  V  E  R  K  I  T  S  *  T  E  N  K  I  S  S  C  H  P  I  A   </first_frame>
            <second_frame>  E  L  K  I  L  L  Q  A  V  V  K  L  Q  R  W  W  R  C  K  L  L  H  A  Q  R  T  K  A  T  V  V  I  Q  S  H  V  L  G  W  I  A  W  K  R  A  S  N  K  E  R  L  L  Q  A  V  L  K  L  Q  R  W  W  R  S  K  L  L  H  E  Q  R  T  K  A  A  V  V  I  Q  S  H  I  L  G  W  L  V  R  Q  S  I  S  R  N  K  D  Q  L  L  Q  A  T  L  K  L  Q  R  W  W  R  D  K  L  L  H  K  Q  K  T  K  A  A  V  V  I  Q  S  H  V  Q  G  W  K  A  R  Q  S  A  S  R  K  K  H  L  T  L  L  A  V  L  K  L  Q  R  W  W  R  G  K  L  L  H  K  Q  R  T  K  S  A  V  V  I  Q  S  H  </second_frame>
            <third_frame>   N  L  K  Y  Y  C  K  Q  *  *  S  C  K  G  G  G  D  V  N  C  F  M  H  R  E  Q  K  P  Q  L  S  S  N  R  M  F  *  D  G  L  P  G  N  V  L  Q  T  R  N  D  Y  F  K  Q  Y  *  S  C  K  G  G  G  E  V  N  C  F  M  N  R  E  Q  K  Q  Q  L  S  S  N  H  I  S  *  D  G  *  S  G  K  V  F  Q  E  I  R  T  N  Y  F  K  Q  H  *  S  C  K  G  G  G  E  I  N  C  F  I  N  R  K  Q  K  Q  Q  L  S  S  N  R  M  S  K  D  G  K  L  D  K  V  L  Q  G  R  S  T  *  R  C  *  Q  Y  *  S  C  K  G  G  G  E  E  N  Y  F  I  N  R  E  Q  N  Q  Q  L  S  S  N  R  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22656" stop="23180"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELKILLQAVVKLQRWWRCKLLHAQRTKATVVIQSHVLGWIAWKRASNKERLLQAVLKLQRWWRSKLLHEQRTKAAVVIQSHILGWLVRQSISRNKDQLLQATLKLQRWWRDKLLHKQKTKAAVVIQSHVQGWKARQSASRKKHLTLLAVLKLQRWWRGKLLHKQRTKSAVVIQSH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="26620" PGL_stop="25864"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26620" e_stop="26419"/>
            <exon e_start="26304" e_stop="25864"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26620" e_stop="26419" e_length="202"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26418" i_stop="26305" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26304" e_stop="25864" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26620" stop="26419"/>
              <exon start="26304" stop="25892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26564" stop="26419"/>
              <exon start="26304" stop="25864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26564" stop="26419"/>
              <exon start="26304" stop="25882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26563" stop="26419"/>
              <exon start="26304" stop="25886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374425" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACACCTCCCTAGCAGCCATCATTTTTTCCTCCTAAATCCTCTTCTTTCTTCCAAGAAAATGGAATTCTCAACTTTCCATCCCTCAACATGGAATTCTTTTTTCACCTCTCCTCTCCTCTTTCCCTATCAGTTCATTCCTGAGAATTATGTTCACTGGAGAGAGACCCCTGAATCTCACATATACTCTGCTGATCTTCCAG : GTGTGAAGAAAGAGGAAATAAAGGTGGAAGTTGAGGATTCAAGCTACCTGATAATAAGAACTGAAGCAGCCAATGAAACAACAGAGCCAATAAGGAGCTTTATGAGGAAATTTAGGCTACCTGGAATGGTGGATATGGATGGAATTTCTGCTAGTTATAGAGATGGTGTTTTGACAGTCACAGTTCCAAGAACACTTGTGAGAAGGGGATTTTTCATTGAACCAGATGACTTGACAGAAAGCATAGTGAATCTTGGTGCTAGTGCTGCTTGATTATTTTTGCTTCCAAACAAGATTTGGTTGATATTGATACCTAATCTTATTATTATTTTTGGGTTTAGGGAGAGGGATTTCAAGATTGTGCTCTCTTTGAGATTATGTACATAAGTTAGATCAGTGGTAATCCTTAAACTGAATTTGCTGTTATTTCAAAAACTATTGA</gDNA_template>
            <first_frame> K  H  L  P  S  S  H  H  F  F  L  L  N  P  L  L  S  S  K  K  M  E  F  S  T  F  H  P  S  T  W  N  S  F  F  T  S  P  L  L  F  P  Y  Q  F  I  P  E  N  Y  V  H  W  R  E  T  P  E  S  H  I  Y  S  A  D  L  P   : G  V  K  K  E  E  I  K  V  E  V  E  D  S  S  Y  L  I  I  R  T  E  A  A  N  E  T  T  E  P  I  R  S  F  M  R  K  F  R  L  P  G  M  V  D  M  D  G  I  S  A  S  Y  R  D  G  V  L  T  V  T  V  P  R  T  L  V  R  R  G  F  F  I  E  P  D  D  L  T  E  S  I  V  N  L  G  A  S  A  A  *  L  F  L  L  P  N  K  I  W  L  I  L  I  P  N  L  I  I  I  F  G  F  R  E  R  D  F  K  I  V  L  S  L  R  L  C  T  *  V  R  S  V  V  I  L  K  L  N  L  L  L  F  Q  K  L  L  </first_frame>
            <second_frame>  N  T  S  L  A  A  I  I  F  S  S  *  I  L  F  F  L  P  R  K  W  N  S  Q  L  S  I  P  Q  H  G  I  L  F  S  P  L  L  S  S  F  P  I  S  S  F  L  R  I  M  F  T  G  E  R  P  L  N  L  T  Y  T  L  L  I  F  Q  :  V  *  R  K  R  K  *  R  W  K  L  R  I  Q  A  T  *  *  *  E  L  K  Q  P  M  K  Q  Q  S  Q  *  G  A  L  *  G  N  L  G  Y  L  E  W  W  I  W  M  E  F  L  L  V  I  E  M  V  F  *  Q  S  Q  F  Q  E  H  L  *  E  G  D  F  S  L  N  Q  M  T  *  Q  K  A  *  *  I  L  V  L  V  L  L  D  Y  F  C  F  Q  T  R  F  G  *  Y  *  Y  L  I  L  L  L  F  L  G  L  G  R  G  I  S  R  L  C  S  L  *  D  Y  V  H  K  L  D  Q  W  *  S  L  N  *  I  C  C  Y  F  K  N  Y  * </second_frame>
            <third_frame>   T  P  P  *  Q  P  S  F  F  P  P  K  S  S  S  F  F  Q  E  N  G  I  L  N  F  P  S  L  N  M  E  F  F  F  H  L  S  S  P  L  S  L  S  V  H  S  *  E  L  C  S  L  E  R  D  P  *  I  S  H  I  L  C  *  S  S  R :   C  E  E  R  G  N  K  G  G  S  *  G  F  K  L  P  D  N  K  N  *  S  S  Q  *  N  N  R  A  N  K  E  L  Y  E  E  I  *  A  T  W  N  G  G  Y  G  W  N  F  C  *  L  *  R  W  C  F  D  S  H  S  S  K  N  T  C  E  K  G  I  F  H  *  T  R  *  L  D  R  K  H  S  E  S  W  C  *  C  C  L  I  I  F  A  S  K  Q  D  L  V  D  I  D  T  *  S  Y  Y  Y  F  W  V  *  G  E  G  F  Q  D  C  A  L  F  E  I  M  Y  I  S  *  I  S  G  N  P  *  T  E  F  A  V  I  S  K  T  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26620" stop="26419"/>
                    <exon start="26304" stop="26033"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHLPSSHHFFLLNPLLSSKKMEFSTFHPSTWNSFFTSPLLFPYQFIPENYVHWRETPESHIYSADLPGVKKEEIKVEVEDSSYLIIRTEAANETTEPIRSFMRKFRLPGMVDMDGISASYRDGVLTVTVPRTLVRRGFFIEPDDLTESIVNLGASAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="31022" PGL_stop="30441"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31022" e_stop="30441"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31022" e_stop="30441" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31022" stop="30441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349860" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACATCTCCTTAGTATTACCCAAAAAACCAAAGAAGAAAGGATCATCTTTTCGCAAGCTTTGGAGATCCTCACTGTCAACTGAGGACTTCTGTAAAACAATCTCGGTCGATGATAGTGGAAGATTTTCAAATGGATCAACGTCTAATGTGGATGTTGTTTTTTCAGAGAATGTACCAGCTGAAAGAGCACTAGCCTACCAAGATTTTGTGAATCACTGCTGCTCAGGTGGCCCAAGAAATCCACACACTGCTCGAGCCATGAAAGGATGTATTGAATGGCCACGTGGAATACCGAAGCATGGTTTGAAGTCCAAGCTTTTGGAAGCTAGAATTCAGAGCCAAAAATCGCAATTGCGCAGTGTGCTTAAACACTTGAATTAGGTGGAAGGATGGCTTCAGTTTGCTGGTTTAGGTAATTGTATAAACTTCATGAATCTCACGAACTAGTAGTTGAATTCACATGGTAAAGAGCTGCTGTAACAGTTTTGTCTCTTCATTGCTGCCTCTTAAGTATTTCAATGAACTTCTAGATATCATTAAACTGTATCCACCCTAAAATTACACGAAATATGTTTTATTTT</gDNA_template>
            <first_frame> *  H  L  L  S  I  T  Q  K  T  K  E  E  R  I  I  F  S  Q  A  L  E  I  L  T  V  N  *  G  L  L  *  N  N  L  G  R  *  *  W  K  I  F  K  W  I  N  V  *  C  G  C  C  F  F  R  E  C  T  S  *  K  S  T  S  L  P  R  F  C  E  S  L  L  L  R  W  P  K  K  S  T  H  C  S  S  H  E  R  M  Y  *  M  A  T  W  N  T  E  A  W  F  E  V  Q  A  F  G  S  *  N  S  E  P  K  I  A  I  A  Q  C  A  *  T  L  E  L  G  G  R  M  A  S  V  C  W  F  R  *  L  Y  K  L  H  E  S  H  E  L  V  V  E  F  T  W  *  R  A  A  V  T  V  L  S  L  H  C  C  L  L  S  I  S  M  N  F  *  I  S  L  N  C  I  H  P  K  I  T  R  N  M  F  Y  F </first_frame>
            <second_frame>  D  I  S  L  V  L  P  K  K  P  K  K  K  G  S  S  F  R  K  L  W  R  S  S  L  S  T  E  D  F  C  K  T  I  S  V  D  D  S  G  R  F  S  N  G  S  T  S  N  V  D  V  V  F  S  E  N  V  P  A  E  R  A  L  A  Y  Q  D  F  V  N  H  C  C  S  G  G  P  R  N  P  H  T  A  R  A  M  K  G  C  I  E  W  P  R  G  I  P  K  H  G  L  K  S  K  L  L  E  A  R  I  Q  S  Q  K  S  Q  L  R  S  V  L  K  H  L  N  *  V  E  G  W  L  Q  F  A  G  L  G  N  C  I  N  F  M  N  L  T  N  *  *  L  N  S  H  G  K  E  L  L  *  Q  F  C  L  F  I  A  A  S  *  V  F  Q  *  T  S  R  Y  H  *  T  V  S  T  L  K  L  H  E  I  C  F  I   </second_frame>
            <third_frame>   T  S  P  *  Y  Y  P  K  N  Q  R  R  K  D  H  L  F  A  S  F  G  D  P  H  C  Q  L  R  T  S  V  K  Q  S  R  S  M  I  V  E  D  F  Q  M  D  Q  R  L  M  W  M  L  F  F  Q  R  M  Y  Q  L  K  E  H  *  P  T  K  I  L  *  I  T  A  A  Q  V  A  Q  E  I  H  T  L  L  E  P  *  K  D  V  L  N  G  H  V  E  Y  R  S  M  V  *  S  P  S  F  W  K  L  E  F  R  A  K  N  R  N  C  A  V  C  L  N  T  *  I  R  W  K  D  G  F  S  L  L  V  *  V  I  V  *  T  S  *  I  S  R  T  S  S  *  I  H  M  V  K  S  C  C  N  S  F  V  S  S  L  L  P  L  K  Y  F  N  E  L  L  D  I  I  K  L  Y  P  P  *  N  Y  T  K  Y  V  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31021" stop="30641"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DISLVLPKKPKKKGSSFRKLWRSSLSTEDFCKTISVDDSGRFSNGSTSNVDVVFSENVPAERALAYQDFVNHCCSGGPRNPHTARAMKGCIEWPRGIPKHGLKSKLLEARIQSQKSQLRSVLKHLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="30446" PGL_stop="31272"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30446" e_stop="31272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="30446" e_stop="31272" e_length="827"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30446" stop="31272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554082" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACATATTTCGTGTAATTTTAGGGTGGATACAGTTTAATGATATCTAGAAGTTCATTGAAATACTTAAGAGGCAGCAATGAAGAGACAAAACTGTTACAGCAGCTCTTTACCATGTGAATTCAACTACTAGTTCGTGAGATTCATGAAGTTTATACAATTACCTAAACCAGCAAACTGAAGCCATCCTTCCACCTAATTCAAGTGTTTAAGCACACTGCGCAATTGCGATTTTTGGCTCTGAATTCTAGCTTCCAAAAGCTTGGACTTCAAACCATGCTTCGGTATTCCACGTGGCCATTCAATACATCCTTTCATGGCTCGAGCAGTGTGTGGATTTCTTGGGCCACCTGAGCAGCAGTGATTCACAAAATCTTGGTAGGCTAGTGCTCTTTCAGCTGGTACATTCTCTGAAAAAACAACATCCACATTAGACGTTGATCCATTTGAAAATCTTCCACTATCATCGACCGAGATTGTTTTACAGAAGTCCTCAGTTGACAGTGAGGATCTCCAAAGCTTGCGAAAAGATGATCCTTTCTTCTTTGGTTTTTTGGGTAATACTAAGGAGATGTCACTAGTCTCAAAATCCAGAGAACCAGATTGACCAGTGTTCTGCTCATGATTCACTTTGCCACATAAAAGATATCTGCCCCGGTCAGTACAATTGACAGAATGCTCAGTTTCACCAACAGTATAATTCGAAAACTGACCTTCAACTTGGGTCACTGTTTCTCTACCACTTTCATCTTTGCAACTCTGGTCGTGATCAATAACGCTATTCAAACATTCGCTGCTGGTGGTCATAGCACATGTTTTACTAACCT</gDNA_template>
            <first_frame> K  T  Y  F  V  *  F  *  G  G  Y  S  L  M  I  S  R  S  S  L  K  Y  L  R  G  S  N  E  E  T  K  L  L  Q  Q  L  F  T  M  *  I  Q  L  L  V  R  E  I  H  E  V  Y  T  I  T  *  T  S  K  L  K  P  S  F  H  L  I  Q  V  F  K  H  T  A  Q  L  R  F  L  A  L  N  S  S  F  Q  K  L  G  L  Q  T  M  L  R  Y  S  T  W  P  F  N  T  S  F  H  G  S  S  S  V  W  I  S  W  A  T  *  A  A  V  I  H  K  I  L  V  G  *  C  S  F  S  W  Y  I  L  *  K  N  N  I  H  I  R  R  *  S  I  *  K  S  S  T  I  I  D  R  D  C  F  T  E  V  L  S  *  Q  *  G  S  P  K  L  A  K  R  *  S  F  L  L  W  F  F  G  *  Y  *  G  D  V  T  S  L  K  I  Q  R  T  R  L  T  S  V  L  L  M  I  H  F  A  T  *  K  I  S  A  P  V  S  T  I  D  R  M  L  S  F  T  N  S  I  I  R  K  L  T  F  N  L  G  H  C  F  S  T  T  F  I  F  A  T  L  V  V  I  N  N  A  I  Q  T  F  A  A  G  G  H  S  T  C  F  T  N   </first_frame>
            <second_frame>  K  H  I  S  C  N  F  R  V  D  T  V  *  *  Y  L  E  V  H  *  N  T  *  E  A  A  M  K  R  Q  N  C  Y  S  S  S  L  P  C  E  F  N  Y  *  F  V  R  F  M  K  F  I  Q  L  P  K  P  A  N  *  S  H  P  S  T  *  F  K  C  L  S  T  L  R  N  C  D  F  W  L  *  I  L  A  S  K  S  L  D  F  K  P  C  F  G  I  P  R  G  H  S  I  H  P  F  M  A  R  A  V  C  G  F  L  G  P  P  E  Q  Q  *  F  T  K  S  W  *  A  S  A  L  S  A  G  T  F  S  E  K  T  T  S  T  L  D  V  D  P  F  E  N  L  P  L  S  S  T  E  I  V  L  Q  K  S  S  V  D  S  E  D  L  Q  S  L  R  K  D  D  P  F  F  F  G  F  L  G  N  T  K  E  M  S  L  V  S  K  S  R  E  P  D  *  P  V  F  C  S  *  F  T  L  P  H  K  R  Y  L  P  R  S  V  Q  L  T  E  C  S  V  S  P  T  V  *  F  E  N  *  P  S  T  W  V  T  V  S  L  P  L  S  S  L  Q  L  W  S  *  S  I  T  L  F  K  H  S  L  L  V  V  I  A  H  V  L  L  T  </second_frame>
            <third_frame>   N  I  F  R  V  I  L  G  W  I  Q  F  N  D  I  *  K  F  I  E  I  L  K  R  Q  Q  *  R  D  K  T  V  T  A  A  L  Y  H  V  N  S  T  T  S  S  *  D  S  *  S  L  Y  N  Y  L  N  Q  Q  T  E  A  I  L  P  P  N  S  S  V  *  A  H  C  A  I  A  I  F  G  S  E  F  *  L  P  K  A  W  T  S  N  H  A  S  V  F  H  V  A  I  Q  Y  I  L  S  W  L  E  Q  C  V  D  F  L  G  H  L  S  S  S  D  S  Q  N  L  G  R  L  V  L  F  Q  L  V  H  S  L  K  K  Q  H  P  H  *  T  L  I  H  L  K  I  F  H  Y  H  R  P  R  L  F  Y  R  S  P  Q  L  T  V  R  I  S  K  A  C  E  K  M  I  L  S  S  L  V  F  W  V  I  L  R  R  C  H  *  S  Q  N  P  E  N  Q  I  D  Q  C  S  A  H  D  S  L  C  H  I  K  D  I  C  P  G  Q  Y  N  *  Q  N  A  Q  F  H  Q  Q  Y  N  S  K  T  D  L  Q  L  G  S  L  F  L  Y  H  F  H  L  C  N  S  G  R  D  Q  *  R  Y  S  N  I  R  C  W  W  S  *  H  M  F  Y  *  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30828" stop="31052"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASALSAGTFSEKTTSTLDVDPFENLPLSSTEIVLQKSSVDSEDLQSLRKDDPFFFGFLGNTKEMSLVSKSREPD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="33096" PGL_stop="32068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33096" e_stop="32660"/>
            <exon e_start="32221" e_stop="32068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.584" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33096" e_stop="32660" e_length="437"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.584">
            <gDNA_intron_boundary i_start="32659" i_stop="32222" i_length="438"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32221" e_stop="32068" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33096" stop="32660"/>
              <exon start="32221" stop="32068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328432" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCCCCTGTTTCACACTCATTCATAATGCAAATATACACACTTAAGTCTCAGCCACTACAATTCTACAAACTCCAAATGGGTTAAAGTTTTCTGTTGACAAAAAAAAAATAAAAAATGAAGATCACAGATGGGTTTGCTAGTTCAATTGATTGTCAGTTGACTACTGATCACCAGCTGCACCACCGCCGGAAGAAAACAAGAACTCCGGTAAAGGGTGGAAGTGGATCAGCCTCAGCCAATCAATTCTTGGTGAGTAAGTTTAATAGCCCTTCGATGGAAATGGAATGCAGAGGATTTGAGTTTTTTAATGGTGGGGCAAAGATGGGTGTTTCTGCCAGAAAGCTCGCCGCTGGCTTGTGGCATTTGGCGGCGGAGTTCGACTCGGCTGGTGGCGGTTCTGGCGGCATGAAGCGGCAGTGTGGTTCGATTCATCCG : CTCCCTTGTTGGATACCAATCCCTAAATCTGTGATGGAGGGAGCTACAAAGTGGGATCCTGGCCACTTCAAAACGTCCAGAGAAGTAAATCATTCCAACAACCTTGTAAAGCTTTATGAACGTCAACGTACTGCTACTACCTCACTTGCTCCTG</gDNA_template>
            <first_frame> S  P  L  F  H  T  H  S  *  C  K  Y  T  H  L  S  L  S  H  Y  N  S  T  N  S  K  W  V  K  V  F  C  *  Q  K  K  N  K  K  *  R  S  Q  M  G  L  L  V  Q  L  I  V  S  *  L  L  I  T  S  C  T  T  A  G  R  K  Q  E  L  R  *  R  V  E  V  D  Q  P  Q  P  I  N  S  W  *  V  S  L  I  A  L  R  W  K  W  N  A  E  D  L  S  F  L  M  V  G  Q  R  W  V  F  L  P  E  S  S  P  L  A  C  G  I  W  R  R  S  S  T  R  L  V  A  V  L  A  A  *  S  G  S  V  V  R  F  I  R :   S  L  V  G  Y  Q  S  L  N  L  *  W  R  E  L  Q  S  G  I  L  A  T  S  K  R  P  E  K  *  I  I  P  T  T  L  *  S  F  M  N  V  N  V  L  L  L  P  H  L  L  L </first_frame>
            <second_frame>  L  P  C  F  T  L  I  H  N  A  N  I  H  T  *  V  S  A  T  T  I  L  Q  T  P  N  G  L  K  F  S  V  D  K  K  K  I  K  N  E  D  H  R  W  V  C  *  F  N  *  L  S  V  D  Y  *  S  P  A  A  P  P  P  E  E  N  K  N  S  G  K  G  W  K  W  I  S  L  S  Q  S  I  L  G  E  *  V  *  *  P  F  D  G  N  G  M  Q  R  I  *  V  F  *  W  W  G  K  D  G  C  F  C  Q  K  A  R  R  W  L  V  A  F  G  G  G  V  R  L  G  W  W  R  F  W  R  H  E  A  A  V  W  F  D  S  S   : A  P  L  L  D  T  N  P  *  I  C  D  G  G  S  Y  K  V  G  S  W  P  L  Q  N  V  Q  R  S  K  S  F  Q  Q  P  C  K  A  L  *  T  S  T  Y  C  Y  Y  L  T  C  S   </second_frame>
            <third_frame>   S  P  V  S  H  S  F  I  M  Q  I  Y  T  L  K  S  Q  P  L  Q  F  Y  K  L  Q  M  G  *  S  F  L  L  T  K  K  K  *  K  M  K  I  T  D  G  F  A  S  S  I  D  C  Q  L  T  T  D  H  Q  L  H  H  R  R  K  K  T  R  T  P  V  K  G  G  S  G  S  A  S  A  N  Q  F  L  V  S  K  F  N  S  P  S  M  E  M  E  C  R  G  F  E  F  F  N  G  G  A  K  M  G  V  S  A  R  K  L  A  A  G  L  W  H  L  A  A  E  F  D  S  A  G  G  G  S  G  G  M  K  R  Q  C  G  S  I  H  P  :  L  P  C  W  I  P  I  P  K  S  V  M  E  G  A  T  K  W  D  P  G  H  F  K  T  S  R  E  V  N  H  S  N  N  L  V  K  L  Y  E  R  Q  R  T  A  T  T  S  L  A  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32983" stop="32660"/>
                    <exon start="32221" stop="32069"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMKITDGFASSIDCQLTTDHQLHHRRKKTRTPVKGGSGSASANQFLVSKFNSPSMEMECRGFEFFNGGAKMGVSARKLAAGLWHLAAEFDSAGGGSGGMKRQCGSIHPLPCWIPIPKSVMEGATKWDPGHFKTSREVNHSNNLVKLYERQRTATTSLAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="40768" PGL_stop="39121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40768" e_stop="40442"/>
            <exon e_start="40349" e_stop="40161"/>
            <exon e_start="40031" e_stop="39866"/>
            <exon e_start="39777" e_stop="39121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.861" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.469" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40768" e_stop="40442" e_length="327"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40349" e_stop="40161" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.861" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40031" e_stop="39866" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.469" acc_prob="1.000">
            <gDNA_intron_boundary i_start="39865" i_stop="39778" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39777" e_stop="39121" e_length="657"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40768" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40768" stop="40442"/>
              <exon start="40349" stop="40163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40730" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40699" stop="40442"/>
              <exon start="40349" stop="40236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40693" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40693" stop="40442"/>
              <exon start="40349" stop="40167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40689" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40687" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40676" stop="40442"/>
              <exon start="40349" stop="40192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40676" stop="40513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40674" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40674" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="40001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40674" stop="40442"/>
              <exon start="40349" stop="40338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40673" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="40001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40671" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40671" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40671" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40671" stop="40442"/>
              <exon start="40349" stop="40218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40668" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40668" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40668" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40668" stop="40442"/>
              <exon start="40349" stop="40281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40667" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40666" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40665" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40665" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39678"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40665" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40665" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40665" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40665" stop="40442"/>
              <exon start="40349" stop="40242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40663" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40663" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40662" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40662" stop="40442"/>
              <exon start="40349" stop="40272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40661" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40661" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40661" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40661" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40661" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40661" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40661" stop="40442"/>
              <exon start="40349" stop="40191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40657" stop="40442"/>
              <exon start="40349" stop="40191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40656" stop="40442"/>
              <exon start="40349" stop="40190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40650" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40648" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40647" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40647" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40641" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40631" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40602" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40598" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40591" stop="40442"/>
              <exon start="40349" stop="40181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40523" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40289" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40253" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40253" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40253" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40214" stop="40161"/>
              <exon start="40031" stop="39866"/>
              <exon start="39777" stop="39296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39951" stop="39866"/>
              <exon start="39777" stop="39129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39935" stop="39866"/>
              <exon start="39777" stop="39131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373238" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39934" stop="39866"/>
              <exon start="39777" stop="39121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39934" stop="39866"/>
              <exon start="39777" stop="39485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39775" stop="39122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39775" stop="39125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39735" stop="39134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397530" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39731" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39729" stop="39123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39711" stop="39144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39710" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39710" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39710" stop="39129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39710" stop="39140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39691" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39688" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39666" stop="39140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39661" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39661" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39655" stop="39144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350991" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39630" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39630" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39595" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39595" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39595" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39590" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216827" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39584" stop="39144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352344" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39583" stop="39144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234176" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39560" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39559" stop="39169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232675" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39513" stop="39131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238694" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39513" stop="39165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232175" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39487" stop="39131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239050" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39451" stop="39148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39401" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39328" stop="39144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234104" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGAGGTCATTTTCTTTGAGGACATTTTAGGCACTTTCTCCCATTATTTAAGAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG : TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT : CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATCAACACCCCTGGAGTTGTTGCCTTGCTAG : GGTCACACAGTGTGGGTCGAACACACTGTGTGAAGTTGGTACACCGTTTATATCCAGAAGTAGACCCTCAATTGAACCCAGAGCATGTACCACACATGCTCAAGAAGTGTCCTGATCCAATTCCAGACCCAAAGGCTGTGCAATATGTGAGAAATGACAGAGGCACGCCCATGGTTCTAGACAACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCTATTTACT</gDNA_template>
            <first_frame> E  R  G  H  F  L  *  G  H  F  R  H  F  L  P  L  F  K  K  V  S  K  *  S  S  K  E  Q  P  L  L  T  I  *  Q  S  K  M  A  T  K  H  L  F  F  F  A  I  L  L  F  S  A  A  S  V  F  A  E  E  N  P  S  L  V  M  D  Y  Y  K  D  T  C  P  Q  A  E  E  I  I  K  E  Q  V  K  L  L  Y  K  R  H  K  N  T  A  F  S  W  L  R  N  I  F  H  D  C  F  V  E  :  S  C  D  A  S  L  L  L  D  S  T  R  R  M  L  S  E  K  E  T  D  R  S  F  G  M  R  N  F  R  Y  I  E  T  I  K  E  A  V  E  R  E  C  P  G  V  V  S  C  A  D  I  L  V  L  S  G  R  D  G  I  V  A  :  L  G  G  P  H  I  P  L  K  T  G  R  R  D  G  R  K  S  R  A  D  I  L  E  Q  H  L  P  D  H  N  E  S  M  S  V  V  L  E  R  F  A  N  I  G  I  N  T  P  G  V  V  A  L  L   : G  S  H  S  V  G  R  T  H  C  V  K  L  V  H  R  L  Y  P  E  V  D  P  Q  L  N  P  E  H  V  P  H  M  L  K  K  C  P  D  P  I  P  D  P  K  A  V  Q  Y  V  R  N  D  R  G  T  P  M  V  L  D  N  N  Y  Y  R  N  I  L  D  N  K  G  L  M  L  V  D  H  Q  L  A  M  D  K  R  T  K  P  Y  V  K  K  M  A  K  S  Q  N  Y  F  F  K  E  F  A  R  A  I  T  I  L  S  E  N  N  P  L  T  G  T  K  G  E  I  R  K  Q  C  N  L  A  N  K  L  H  *  N  N  P  A  F  S  Y  V  L  V  L  I  I  T  F  P  P  L  P  L  C  I  Y  M  R  G  N  S  E  K  *  *  *  E  *  D  G  F  S  F  L  V  L  *  V  C  V  V  D  M  T  M  F  I  T  F  H  V  L  F  V  K  F  H  Y  F  S  Y  P  L  K  L  *  N  K  C  *  F  V  A  I  Y  </first_frame>
            <second_frame>  K  E  V  I  F  F  E  D  I  L  G  T  F  S  H  Y  L  R  R  Y  L  S  D  H  P  K  N  N  L  Y  *  P  F  S  K  V  K  W  L  P  N  I  F  F  S  L  L  F  S  C  F  Q  L  P  L  F  L  Q  R  K  I  L  A  L  *  W  T  I  T  R  T  L  A  L  K  L  K  K  S  S  K  N  K  S  N  F  S  T  N  A  T  R  I  L  H  F  L  G  *  E  T  Y  S  M  T  A  L  L  S :   H  V  M  L  P  C  C  W  T  Q  Q  G  G  C  C  L  R  K  R  Q  T  G  V  L  V  *  E  I  S  D  T  L  R  L  L  K  K  L  *  K  G  S  A  L  V  L  F  L  V  L  I  F  L  C  C  L  V  E  M  V  L  L  L :   *  E  G  H  T  F  L  S  K  L  E  E  E  M  E  E  K  A  E  Q  T  F  L  N  S  T  S  Q  I  T  M  K  A  *  V  L  F  L  K  D  L  L  T  L  E  S  T  P  L  E  L  L  P  C  *  :  G  H  T  V  W  V  E  H  T  V  *  S  W  Y  T  V  Y  I  Q  K  *  T  L  N  *  T  Q  S  M  Y  H  T  C  S  R  S  V  L  I  Q  F  Q  T  Q  R  L  C  N  M  *  E  M  T  E  A  R  P  W  F  *  T  T  T  T  T  G  T  Y  W  T  I  R  G  *  C  *  L  I  I  N  *  Q  W  T  R  G  L  S  H  M  *  R  K  W  Q  K  A  K  I  I  S  S  R  N  L  Q  E  P  S  L  F  F  L  R  I  I  H  L  L  G  Q  K  V  R  S  E  S  S  V  I  L  P  T  S  S  T  K  T  I  L  L  F  L  M  C  L  Y  S  L  S  L  F  P  P  F  L  C  V  F  I  C  E  G  T  V  K  N  D  S  R  N  K  M  V  L  V  S  W  C  C  K  F  V  *  W  T  *  P  C  S  L  H  S  M  Y  C  L  *  N  F  T  I  L  A  T  L  L  S  Y  E  T  S  V  N  L  L  L  F  T </second_frame>
            <third_frame>   K  R  S  F  S  L  R  T  F  *  A  L  S  P  I  I  *  E  G  I  *  V  I  I  Q  R  T  T  S  T  D  H  L  A  K  *  N  G  Y  Q  T  S  F  F  L  C  Y  S  L  V  F  S  C  L  C  F  C  R  G  K  S  *  P  C  N  G  L  L  Q  G  H  L  P  S  S  *  R  N  H  Q  R  T  S  Q  T  S  L  Q  T  P  Q  E  Y  C  I  F  L  A  K  K  H  I  P  *  L  L  C  *   : V  M  *  C  F  L  V  A  G  L  N  K  E  D  A  V  *  E  R  D  R  Q  E  F  W  Y  E  K  F  Q  I  H  *  D  Y  *  R  S  C  R  K  G  V  P  W  C  C  F  L  C  *  Y  S  C  V  V  W  *  R  W  Y  C  C   : S  R  R  A  T  H  S  S  Q  N  W  K  K  R  W  K  K  K  Q  S  R  H  S  *  T  A  P  P  R  S  Q  *  K  H  E  C  C  S  *  K  I  C  *  H  W  N  Q  H  P  W  S  C  C  L  A  R :   V  T  Q  C  G  S  N  T  L  C  E  V  G  T  P  F  I  S  R  S  R  P  S  I  E  P  R  A  C  T  T  H  A  Q  E  V  S  *  S  N  S  R  P  K  G  C  A  I  C  E  K  *  Q  R  H  A  H  G  S  R  Q  Q  L  L  Q  E  H  I  G  Q  *  G  V  N  V  S  *  S  S  T  S  N  G  Q  E  D  *  A  I  C  K  E  N  G  K  K  P  K  L  F  L  Q  G  I  C  K  S  H  H  Y  S  F  *  E  *  S  T  Y  W  D  K  R  *  D  Q  K  A  V  *  S  C  Q  Q  A  P  L  K  Q  S  C  F  F  L  C  A  C  T  H  Y  H  F  S  P  P  S  F  V  Y  L  Y  A  R  E  Q  *  K  M  I  V  G  I  R  W  F  *  F  L  G  V  V  S  L  C  S  G  H  D  H  V  H  Y  I  P  C  T  V  C  K  I  S  L  F  *  L  P  S  *  V  M  K  Q  V  L  I  C  C  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40666" stop="40442"/>
                    <exon start="40349" stop="40161"/>
                    <exon start="40031" stop="39866"/>
                    <exon start="39777" stop="39368"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSKMATKHLFFFAILLFSAASVFAEENPSLVMDYYKDTCPQAEEIIKEQVKLLYKRHKNTAFSWLRNIFHDCFVESCDASLLLDSTRRMLSEKETDRSFGMRNFRYIETIKEAVERECPGVVSCADILVLSGRDGIVALGGPHIPLKTGRRDGRKSRADILEQHLPDHNESMSVVLERFANIGINTPGVVALLGSHSVGRTHCVKLVHRLYPEVDPQLNPEHVPHMLKKCPDPIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMLVDHQLAMDKRTKPYVKKMAKSQNYFFKEFARAITILSENNPLTGTKGEIRKQCNLANKLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="40768" e_stop="40442"/>
            <exon e_start="40349" e_stop="40161"/>
            <exon e_start="40031" e_stop="39894"/>
            <exon e_start="39595" e_stop="39128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="0.988"/>
          <exon-intron don_prob="0.861" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="40768" e_stop="40442" e_length="327"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40349" e_stop="40161" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.861" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40160" i_stop="40032" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="40031" e_stop="39894" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39893" i_stop="39596" i_length="298"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39595" e_stop="39128" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40768" stop="40442"/>
              <exon start="40349" stop="40163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40730" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40699" stop="40442"/>
              <exon start="40349" stop="40236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40693" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40693" stop="40442"/>
              <exon start="40349" stop="40167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40687" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40676" stop="40442"/>
              <exon start="40349" stop="40192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40676" stop="40513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40674" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="40001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40674" stop="40442"/>
              <exon start="40349" stop="40338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40673" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="40001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40671" stop="40442"/>
              <exon start="40349" stop="40218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40668" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40668" stop="40442"/>
              <exon start="40349" stop="40281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40667" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40665" stop="40442"/>
              <exon start="40349" stop="40242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40663" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40662" stop="40442"/>
              <exon start="40349" stop="40272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40661" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40661" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40661" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40661" stop="40442"/>
              <exon start="40349" stop="40191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40659" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39894"/>
              <exon start="39595" stop="39538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40657" stop="40442"/>
              <exon start="40349" stop="40191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40656" stop="40442"/>
              <exon start="40349" stop="40190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40647" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40631" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40602" stop="40442"/>
              <exon start="40349" stop="40161"/>
              <exon start="40031" stop="39989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40591" stop="40442"/>
              <exon start="40349" stop="40181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39595" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39595" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39595" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39590" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216827" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39584" stop="39144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352344" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39583" stop="39144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234176" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39560" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39559" stop="39169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232675" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39513" stop="39131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238694" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39513" stop="39165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232175" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39487" stop="39131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239050" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39451" stop="39148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39401" stop="39128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39328" stop="39144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234104" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGAGGTCATTTTCTTTGAGGACATTTTAGGCACTTTCTCCCATTATTTAAGAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG : TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCT : CTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAGCACCTCCCAGATCACAATGAAAGCATGAGTGTTGTTCTTGAAAGATTTGCTAACATTGGAATC : AACAACTACTACAGGAACATATTGGACAATAAGGGGTTAATGTTAGTTGATCATCAACTAGCAATGGACAAGAGGACTAAGCCATATGTAAAGAAAATGGCAAAAAGCCAAAATTATTTCTTCAAGGAATTTGCAAGAGCCATCACTATTCTTTCTGAGAATAATCCACTTACTGGGACAAAAGGTGAGATCAGAAAGCAGTGTAATCTTGCCAACAAGCTCCACTAAAACAATCCTGCTTTTTCTTATGTGCTTGTACTCATTATCACTTTTCCCCCCCTTCCTTTGTGTATTTATATGCGAGGGAACAGTGAAAAATGATAGTAGGAATAAGATGGTTTTAGTTTCTTGGTGTTGTAAGTTTGTGTAGTGGACATGACCATGTTCATTACATTCCATGTACTGTTTGTAAAATTTCACTATTTTAGCTACCCTCTTAAGTTATGAAACAAGTGTTAATTTGTTGCT</gDNA_template>
            <first_frame> E  R  G  H  F  L  *  G  H  F  R  H  F  L  P  L  F  K  K  V  S  K  *  S  S  K  E  Q  P  L  L  T  I  *  Q  S  K  M  A  T  K  H  L  F  F  F  A  I  L  L  F  S  A  A  S  V  F  A  E  E  N  P  S  L  V  M  D  Y  Y  K  D  T  C  P  Q  A  E  E  I  I  K  E  Q  V  K  L  L  Y  K  R  H  K  N  T  A  F  S  W  L  R  N  I  F  H  D  C  F  V  E  :  S  C  D  A  S  L  L  L  D  S  T  R  R  M  L  S  E  K  E  T  D  R  S  F  G  M  R  N  F  R  Y  I  E  T  I  K  E  A  V  E  R  E  C  P  G  V  V  S  C  A  D  I  L  V  L  S  G  R  D  G  I  V  A  :  L  G  G  P  H  I  P  L  K  T  G  R  R  D  G  R  K  S  R  A  D  I  L  E  Q  H  L  P  D  H  N  E  S  M  S  V  V  L  E  R  F  A  N  I  G  I  :  N  N  Y  Y  R  N  I  L  D  N  K  G  L  M  L  V  D  H  Q  L  A  M  D  K  R  T  K  P  Y  V  K  K  M  A  K  S  Q  N  Y  F  F  K  E  F  A  R  A  I  T  I  L  S  E  N  N  P  L  T  G  T  K  G  E  I  R  K  Q  C  N  L  A  N  K  L  H  *  N  N  P  A  F  S  Y  V  L  V  L  I  I  T  F  P  P  L  P  L  C  I  Y  M  R  G  N  S  E  K  *  *  *  E  *  D  G  F  S  F  L  V  L  *  V  C  V  V  D  M  T  M  F  I  T  F  H  V  L  F  V  K  F  H  Y  F  S  Y  P  L  K  L  *  N  K  C  *  F  V  A </first_frame>
            <second_frame>  K  E  V  I  F  F  E  D  I  L  G  T  F  S  H  Y  L  R  R  Y  L  S  D  H  P  K  N  N  L  Y  *  P  F  S  K  V  K  W  L  P  N  I  F  F  S  L  L  F  S  C  F  Q  L  P  L  F  L  Q  R  K  I  L  A  L  *  W  T  I  T  R  T  L  A  L  K  L  K  K  S  S  K  N  K  S  N  F  S  T  N  A  T  R  I  L  H  F  L  G  *  E  T  Y  S  M  T  A  L  L  S :   H  V  M  L  P  C  C  W  T  Q  Q  G  G  C  C  L  R  K  R  Q  T  G  V  L  V  *  E  I  S  D  T  L  R  L  L  K  K  L  *  K  G  S  A  L  V  L  F  L  V  L  I  F  L  C  C  L  V  E  M  V  L  L  L :   *  E  G  H  T  F  L  S  K  L  E  E  E  M  E  E  K  A  E  Q  T  F  L  N  S  T  S  Q  I  T  M  K  A  *  V  L  F  L  K  D  L  L  T  L  E  S :   T  T  T  T  G  T  Y  W  T  I  R  G  *  C  *  L  I  I  N  *  Q  W  T  R  G  L  S  H  M  *  R  K  W  Q  K  A  K  I  I  S  S  R  N  L  Q  E  P  S  L  F  F  L  R  I  I  H  L  L  G  Q  K  V  R  S  E  S  S  V  I  L  P  T  S  S  T  K  T  I  L  L  F  L  M  C  L  Y  S  L  S  L  F  P  P  F  L  C  V  F  I  C  E  G  T  V  K  N  D  S  R  N  K  M  V  L  V  S  W  C  C  K  F  V  *  W  T  *  P  C  S  L  H  S  M  Y  C  L  *  N  F  T  I  L  A  T  L  L  S  Y  E  T  S  V  N  L  L   </second_frame>
            <third_frame>   K  R  S  F  S  L  R  T  F  *  A  L  S  P  I  I  *  E  G  I  *  V  I  I  Q  R  T  T  S  T  D  H  L  A  K  *  N  G  Y  Q  T  S  F  F  L  C  Y  S  L  V  F  S  C  L  C  F  C  R  G  K  S  *  P  C  N  G  L  L  Q  G  H  L  P  S  S  *  R  N  H  Q  R  T  S  Q  T  S  L  Q  T  P  Q  E  Y  C  I  F  L  A  K  K  H  I  P  *  L  L  C  *   : V  M  *  C  F  L  V  A  G  L  N  K  E  D  A  V  *  E  R  D  R  Q  E  F  W  Y  E  K  F  Q  I  H  *  D  Y  *  R  S  C  R  K  G  V  P  W  C  C  F  L  C  *  Y  S  C  V  V  W  *  R  W  Y  C  C   : S  R  R  A  T  H  S  S  Q  N  W  K  K  R  W  K  K  K  Q  S  R  H  S  *  T  A  P  P  R  S  Q  *  K  H  E  C  C  S  *  K  I  C  *  H  W  N   : Q  Q  L  L  Q  E  H  I  G  Q  *  G  V  N  V  S  *  S  S  T  S  N  G  Q  E  D  *  A  I  C  K  E  N  G  K  K  P  K  L  F  L  Q  G  I  C  K  S  H  H  Y  S  F  *  E  *  S  T  Y  W  D  K  R  *  D  Q  K  A  V  *  S  C  Q  Q  A  P  L  K  Q  S  C  F  F  L  C  A  C  T  H  Y  H  F  S  P  P  S  F  V  Y  L  Y  A  R  E  Q  *  K  M  I  V  G  I  R  W  F  *  F  L  G  V  V  S  L  C  S  G  H  D  H  V  H  Y  I  P  C  T  V  C  K  I  S  L  F  *  L  P  S  *  V  M  K  Q  V  L  I  C  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40666" stop="40442"/>
                    <exon start="40349" stop="40161"/>
                    <exon start="40031" stop="39894"/>
                    <exon start="39595" stop="39368"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSKMATKHLFFFAILLFSAASVFAEENPSLVMDYYKDTCPQAEEIIKEQVKLLYKRHKNTAFSWLRNIFHDCFVESCDASLLLDSTRRMLSEKETDRSFGMRNFRYIETIKEAVERECPGVVSCADILVLSGRDGIVALGGPHIPLKTGRRDGRKSRADILEQHLPDHNESMSVVLERFANIGINNYYRNILDNKGLMLVDHQLAMDKRTKPYVKKMAKSQNYFFKEFARAITILSENNPLTGTKGEIRKQCNLANKLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40768" e_stop="40442"/>
            <exon e_start="40349" e_stop="40051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.994" e_score="0.988"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="40768" e_stop="40442" e_length="327"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.994">
            <gDNA_intron_boundary i_start="40441" i_stop="40350" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="40349" e_stop="40051" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40768" stop="40442"/>
              <exon start="40349" stop="40163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40699" stop="40442"/>
              <exon start="40349" stop="40236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40693" stop="40442"/>
              <exon start="40349" stop="40167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40676" stop="40442"/>
              <exon start="40349" stop="40112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40676" stop="40442"/>
              <exon start="40349" stop="40192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40676" stop="40513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40674" stop="40442"/>
              <exon start="40349" stop="40338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40671" stop="40442"/>
              <exon start="40349" stop="40218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40668" stop="40442"/>
              <exon start="40349" stop="40281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40665" stop="40442"/>
              <exon start="40349" stop="40242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40662" stop="40442"/>
              <exon start="40349" stop="40272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40661" stop="40442"/>
              <exon start="40349" stop="40191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40659" stop="40442"/>
              <exon start="40349" stop="40051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40657" stop="40442"/>
              <exon start="40349" stop="40191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40656" stop="40442"/>
              <exon start="40349" stop="40190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40591" stop="40442"/>
              <exon start="40349" stop="40181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGAGGTCATTTTCTTTGAGGACATTTTAGGCACTTTCTCCCATTATTTAAGAAGGTATCTAAGTGATCATCCAAAGAACAACCTCTACTGACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAG : TCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTAT</gDNA_template>
            <first_frame> E  R  G  H  F  L  *  G  H  F  R  H  F  L  P  L  F  K  K  V  S  K  *  S  S  K  E  Q  P  L  L  T  I  *  Q  S  K  M  A  T  K  H  L  F  F  F  A  I  L  L  F  S  A  A  S  V  F  A  E  E  N  P  S  L  V  M  D  Y  Y  K  D  T  C  P  Q  A  E  E  I  I  K  E  Q  V  K  L  L  Y  K  R  H  K  N  T  A  F  S  W  L  R  N  I  F  H  D  C  F  V  E  :  S  C  D  A  S  L  L  L  D  S  T  R  R  M  L  S  E  K  E  T  D  R  S  F  G  M  R  N  F  R  Y  I  E  T  I  K  E  A  V  E  R  E  C  P  G  V  V  S  C  A  D  I  L  V  L  S  G  R  D  G  I  V  A  V  S  C  Y  F  V  V  D  L  D  L  F  M  Y  F  *  E  A  *  I  F  G  S  E  K  W  F  S  *  I  L  L  V  L  I  C   </first_frame>
            <second_frame>  K  E  V  I  F  F  E  D  I  L  G  T  F  S  H  Y  L  R  R  Y  L  S  D  H  P  K  N  N  L  Y  *  P  F  S  K  V  K  W  L  P  N  I  F  F  S  L  L  F  S  C  F  Q  L  P  L  F  L  Q  R  K  I  L  A  L  *  W  T  I  T  R  T  L  A  L  K  L  K  K  S  S  K  N  K  S  N  F  S  T  N  A  T  R  I  L  H  F  L  G  *  E  T  Y  S  M  T  A  L  L  S :   H  V  M  L  P  C  C  W  T  Q  Q  G  G  C  C  L  R  K  R  Q  T  G  V  L  V  *  E  I  S  D  T  L  R  L  L  K  K  L  *  K  G  S  A  L  V  L  F  L  V  L  I  F  L  C  C  L  V  E  M  V  L  L  L  *  V  V  T  L  *  *  I  W  T  C  L  C  I  F  E  K  L  R  Y  L  V  L  K  S  G  L  V  K  Y  C  L  Y  *  Y  V  </second_frame>
            <third_frame>   K  R  S  F  S  L  R  T  F  *  A  L  S  P  I  I  *  E  G  I  *  V  I  I  Q  R  T  T  S  T  D  H  L  A  K  *  N  G  Y  Q  T  S  F  F  L  C  Y  S  L  V  F  S  C  L  C  F  C  R  G  K  S  *  P  C  N  G  L  L  Q  G  H  L  P  S  S  *  R  N  H  Q  R  T  S  Q  T  S  L  Q  T  P  Q  E  Y  C  I  F  L  A  K  K  H  I  P  *  L  L  C  *   : V  M  *  C  F  L  V  A  G  L  N  K  E  D  A  V  *  E  R  D  R  Q  E  F  W  Y  E  K  F  Q  I  H  *  D  Y  *  R  S  C  R  K  G  V  P  W  C  C  F  L  C  *  Y  S  C  V  V  W  *  R  W  Y  C  C  C  K  L  L  L  C  S  R  S  G  L  V  Y  V  F  L  R  S  L  D  I  W  F  *  K  V  V  *  L  N  I  A  C  T  N  M  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40666" stop="40442"/>
                    <exon start="40349" stop="40113"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSKMATKHLFFFAILLFSAASVFAEENPSLVMDYYKDTCPQAEEIIKEQVKLLYKRHKNTAFSWLRNIFHDCFVESCDASLLLDSTRRMLSEKETDRSFGMRNFRYIETIKEAVERECPGVVSCADILVLSGRDGIVAVSCYFVVDLDLFMYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="40676" e_stop="39957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="40676" e_stop="39957" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40676" stop="40513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40671" stop="39957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315878" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCATTTAGCAAAGTAAAATGGCTACCAAACATCTTTTTTTCTTTGCTATTCTCTTGTTTTCAGCTGCCTCTGTTTTTGCAGAGGAAAATCCTAGCCTTGTAATGGACTATTACAAGGACACTTGCCCTCAAGCTGAAGAAATCATCAAAGAACAAGTCAAACTTCTCTACAAACGCCACAAGAATACTGCATTTTCTTGGCTAAGAAACATATTCCATGACTGCTTTGTTGAGGTACTAAAAAAAATGAAACTTTCTTTTCATTTTTAGACACCCTTTTTGGAGATGTTGAATTTACTGTTCTTTTTTTTTATTTTTAAATACAGTCATGTGATGCTTCCTTGTTGCTGGACTCAACAAGGAGGATGCTGTCTGAGAAAGAGACAGACAGGAGTTTTGGTATGAGAAATTTCAGATACATTGAGACTATTAAAGAAGCTGTAGAAAGGGAGTGCCCTGGTGTTGTTTCTTGTGCTGATATTCTTGTGTTGTCTGGTAGAGATGGTATTGTTGCTGTAAGTTGTTACTTTGTAGTAGATCTGGACTTGTTTATGTATTTTTGAGAAGCTTAGATATTTGGTTCTGAAAAGTGGTTTAGTTAAATATTGCTTGTACTAATATGTATAATGGTGTCTTGTACATAGCTAGGAGGGCCACACATTCCTCTCAAAACTGGAAGAAGAGATGGAAGAAAAAGCAGAGCAGACATTCTTGAACAG</gDNA_template>
            <first_frame> D  H  L  A  K  *  N  G  Y  Q  T  S  F  F  L  C  Y  S  L  V  F  S  C  L  C  F  C  R  G  K  S  *  P  C  N  G  L  L  Q  G  H  L  P  S  S  *  R  N  H  Q  R  T  S  Q  T  S  L  Q  T  P  Q  E  Y  C  I  F  L  A  K  K  H  I  P  *  L  L  C  *  G  T  K  K  N  E  T  F  F  S  F  L  D  T  L  F  G  D  V  E  F  T  V  L  F  F  Y  F  *  I  Q  S  C  D  A  S  L  L  L  D  S  T  R  R  M  L  S  E  K  E  T  D  R  S  F  G  M  R  N  F  R  Y  I  E  T  I  K  E  A  V  E  R  E  C  P  G  V  V  S  C  A  D  I  L  V  L  S  G  R  D  G  I  V  A  V  S  C  Y  F  V  V  D  L  D  L  F  M  Y  F  *  E  A  *  I  F  G  S  E  K  W  F  S  *  I  L  L  V  L  I  C  I  M  V  S  C  T  *  L  G  G  P  H  I  P  L  K  T  G  R  R  D  G  R  K  S  R  A  D  I  L  E  Q </first_frame>
            <second_frame>  T  I  *  Q  S  K  M  A  T  K  H  L  F  F  F  A  I  L  L  F  S  A  A  S  V  F  A  E  E  N  P  S  L  V  M  D  Y  Y  K  D  T  C  P  Q  A  E  E  I  I  K  E  Q  V  K  L  L  Y  K  R  H  K  N  T  A  F  S  W  L  R  N  I  F  H  D  C  F  V  E  V  L  K  K  M  K  L  S  F  H  F  *  T  P  F  L  E  M  L  N  L  L  F  F  F  F  I  F  K  Y  S  H  V  M  L  P  C  C  W  T  Q  Q  G  G  C  C  L  R  K  R  Q  T  G  V  L  V  *  E  I  S  D  T  L  R  L  L  K  K  L  *  K  G  S  A  L  V  L  F  L  V  L  I  F  L  C  C  L  V  E  M  V  L  L  L  *  V  V  T  L  *  *  I  W  T  C  L  C  I  F  E  K  L  R  Y  L  V  L  K  S  G  L  V  K  Y  C  L  Y  *  Y  V  *  W  C  L  V  H  S  *  E  G  H  T  F  L  S  K  L  E  E  E  M  E  E  K  A  E  Q  T  F  L  N   </second_frame>
            <third_frame>   P  F  S  K  V  K  W  L  P  N  I  F  F  S  L  L  F  S  C  F  Q  L  P  L  F  L  Q  R  K  I  L  A  L  *  W  T  I  T  R  T  L  A  L  K  L  K  K  S  S  K  N  K  S  N  F  S  T  N  A  T  R  I  L  H  F  L  G  *  E  T  Y  S  M  T  A  L  L  R  Y  *  K  K  *  N  F  L  F  I  F  R  H  P  F  W  R  C  *  I  Y  C  S  F  F  L  F  L  N  T  V  M  *  C  F  L  V  A  G  L  N  K  E  D  A  V  *  E  R  D  R  Q  E  F  W  Y  E  K  F  Q  I  H  *  D  Y  *  R  S  C  R  K  G  V  P  W  C  C  F  L  C  *  Y  S  C  V  V  W  *  R  W  Y  C  C  C  K  L  L  L  C  S  R  S  G  L  V  Y  V  F  L  R  S  L  D  I  W  F  *  K  V  V  *  L  N  I  A  C  T  N  M  Y  N  G  V  L  Y  I  A  R  R  A  T  H  S  S  Q  N  W  K  K  R  W  K  K  K  Q  S  R  H  S  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40666" stop="40406"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSKMATKHLFFFAILLFSAASVFAEENPSLVMDYYKDTCPQAEEIIKEQVKLLYKRHKNTAFSWLRNIFHDCFVEVLKKMKLSFHF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40355" stop="40113"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQSCDASLLLDSTRRMLSEKETDRSFGMRNFRYIETIKEAVERECPGVVSCADILVLSGRDGIVAVSCYFVVDLDLFMYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="39123" PGL_stop="39774"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39123" e_stop="39774"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="39123" e_stop="39774" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39123" stop="39612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39123" stop="39513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39138" stop="39774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39138" stop="39774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39167" stop="39369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200411" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATAGCAACAAATTAACACTTGTTTCATAACTTAAGAGGGTAGCTAAAATAGTGAAATTTTACAAACAGTACATGGAATGTAATGAACATGGTCATGTCCACTACACAAACTTACAACACCAAGAAACTAAAACCATCTTATTCCTACTATCATTTTTCACTGTTCCCTCGCATATAAATACACAAAGGAAGGGGGGGAAAAGTGATAATGAGTACAAGCACATAAGAAAAAGCAGGATTGTTTTAGTGGAGCTTGTTGGCAAGATTACACTGCTTTCTGATCTCACCTTTTGTCCCAGTAAGTGGATTATTCTCAGAAAGAATAGTGATGGCTCTTGCAAATTCCTTGAAGAAATAATTTTGGCTTTTTGCCATTTTCTTTACATATGGCTTAGTCCTCTTGTCCATTGCTAGTTGATGATCAACTAACATTAACCCCTTATTGTCCAATATGTTCCTGTAGTAGTTGTTGTCTAGAACCATGGGCGTGCCTCTGTCATTTCTCACATATTGCACAGCCTTTGGGTCTGGAATTGGATCAGGACACTTCTTGAGCATGTGTGGTACATGCTCTGGGTTCAATTGAGGGTCTACTTCTGGATATAAACGGTGTACCAACTTCACACAGTGTGTTCGACCCACACTGTGTG</gDNA_template>
            <first_frame> *  I  A  T  N  *  H  L  F  H  N  L  R  G  *  L  K  *  *  N  F  T  N  S  T  W  N  V  M  N  M  V  M  S  T  T  Q  T  Y  N  T  K  K  L  K  P  S  Y  S  Y  Y  H  F  S  L  F  P  R  I  *  I  H  K  G  R  G  G  K  V  I  M  S  T  S  T  *  E  K  A  G  L  F  *  W  S  L  L  A  R  L  H  C  F  L  I  S  P  F  V  P  V  S  G  L  F  S  E  R  I  V  M  A  L  A  N  S  L  K  K  *  F  W  L  F  A  I  F  F  T  Y  G  L  V  L  L  S  I  A  S  *  *  S  T  N  I  N  P  L  L  S  N  M  F  L  *  *  L  L  S  R  T  M  G  V  P  L  S  F  L  T  Y  C  T  A  F  G  S  G  I  G  S  G  H  F  L  S  M  C  G  T  C  S  G  F  N  *  G  S  T  S  G  Y  K  R  C  T  N  F  T  Q  C  V  R  P  T  L  C  </first_frame>
            <second_frame>  K  *  Q  Q  I  N  T  C  F  I  T  *  E  G  S  *  N  S  E  I  L  Q  T  V  H  G  M  *  *  T  W  S  C  P  L  H  K  L  T  T  P  R  N  *  N  H  L  I  P  T  I  I  F  H  C  S  L  A  Y  K  Y  T  K  E  G  G  E  K  *  *  *  V  Q  A  H  K  K  K  Q  D  C  F  S  G  A  C  W  Q  D  Y  T  A  F  *  S  H  L  L  S  Q  *  V  D  Y  S  Q  K  E  *  *  W  L  L  Q  I  P  *  R  N  N  F  G  F  L  P  F  S  L  H  M  A  *  S  S  C  P  L  L  V  D  D  Q  L  T  L  T  P  Y  C  P  I  C  S  C  S  S  C  C  L  E  P  W  A  C  L  C  H  F  S  H  I  A  Q  P  L  G  L  E  L  D  Q  D  T  S  *  A  C  V  V  H  A  L  G  S  I  E  G  L  L  L  D  I  N  G  V  P  T  S  H  S  V  F  D  P  H  C  V </second_frame>
            <third_frame>   N  S  N  K  L  T  L  V  S  *  L  K  R  V  A  K  I  V  K  F  Y  K  Q  Y  M  E  C  N  E  H  G  H  V  H  Y  T  N  L  Q  H  Q  E  T  K  T  I  L  F  L  L  S  F  F  T  V  P  S  H  I  N  T  Q  R  K  G  G  K  S  D  N  E  Y  K  H  I  R  K  S  R  I  V  L  V  E  L  V  G  K  I  T  L  L  S  D  L  T  F  C  P  S  K  W  I  I  L  R  K  N  S  D  G  S  C  K  F  L  E  E  I  I  L  A  F  C  H  F  L  Y  I  W  L  S  P  L  V  H  C  *  L  M  I  N  *  H  *  P  L  I  V  Q  Y  V  P  V  V  V  V  V  *  N  H  G  R  A  S  V  I  S  H  I  L  H  S  L  W  V  W  N  W  I  R  T  L  L  E  H  V  W  Y  M  L  W  V  Q  L  R  V  Y  F  W  I  *  T  V  Y  Q  L  H  T  V  C  S  T  H  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0008E03.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39155" stop="39538"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKRVAKIVKFYKQYMECNEHGHVHYTNLQHQETKTILFLLSFFTVPSHINTQRKGGKSDNEYKHIRKSRIVLVELVGKITLLSDLTFCPSKWIILRKNSDGSCKFLEEIILAFCHFLYIWLSPLVHC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 144 chains have been computed
$ 
$ memory statistics:
$ 261352 bytes spliced alignments in total
$ 127 spliced alignments have been stored
$ 2057 bytes was the average size of a spliced alignment
$ 18744 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1874 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 167 backtrace matrices have been allocated
$ 
$ date finished: 2006-11-17 22:02:40
-->
