<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:10:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246306" ref_strand="+" ref_description="SGN-E246306 [cLEF-40-J19]">
      <seq>cattacttgcatcttttccccctgtaaaatgtttttttttggtgattttttaatttttctgtgatgtctaaattgcgatgtgtctctacatcactccttttggtgtctacagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcatttgtgaagatgcagacgttgataaagctgttgagttggctcattctgctgttttctttaaccagggacaatgctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcattgttggagaccctttcaagaagggagttgaacaaggtccgcagattgatacagagcaatttgagaagatcctgaagtacataaaatctggtactgaaagcggggctactctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="1106" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="806" g_stop="521" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="520" i_stop="442" i_length="79">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="441" g_stop="304" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="424" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="303" i_stop="24" i_length="280">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23" g_stop="1" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="447" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E246306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="806" e_stop="521"/>
          <exon e_start="441" e_stop="304"/>
          <exon e_start="23" e_stop="1"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAGGTAGCAAAAATTTCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAGGTACTGTTTTTTCGTGTATCGCTGTCCCCTCTGTCATGGATAATATATAAAAAGAGAATAGTTAAACAAATTCTTTGCCAACTTAAGGACAAGAAGGAATAATATATGTTCACCAATTTGGATGTAGCCAACTTTTCAGGCAATGGTACCTTTATTATTTCCTTTTCAGCATCTTACACAAACTTAAATCATGAATTTCCAGCAAAGAGAAGTAGTAATTACGGACTTCCATTTACATTTCTGAAGTAGTTGTAACATGAATGTTTTGTGTTATCAATAGATTGATACAGAGCAATTTGAGAA</genome_strand>
        <mrna_strand>CATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG...............................................................................GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG........................................................................................................................................................................................................................................................................................ATTGATACAGAGCAATTTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338365" ref_strand="+" ref_description="SGN-E338365 [cTOE-13-N12]">
      <seq>gataagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcatttgtgaagatgcagacgttgataaagctgttgagttggctcattctgctgttttctttaaccagggacaatgctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcattgttggagaccctttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="999" stop="28"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="701" g_stop="521" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="520" i_stop="442" i_length="79">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="441" g_stop="328" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="294" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E338365" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="701" e_stop="521"/>
          <exon e_start="441" e_stop="328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAGGTAGCAAAAATTTCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAG</genome_strand>
        <mrna_strand>GATA-AGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG...............................................................................GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249288" ref_strand="+" ref_description="SGN-E249288 [cLEF-50-L24]">
      <seq>caattggtgttgcaagacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaagttggacttccccctggagtcttaaatgtcattcctggatccggtagtgcaggtgcagatcttgccagtcatatggatgtcgataagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcatttgtgaagatgcagacgttgataaagctgttgagttggctcattctgctgttttctttaaccagggacaatgctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcattgttggagaccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2101" stop="33"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1801" g_stop="1644" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1424" g_stop="1338" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="245" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1337" i_stop="695" i_length="643">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="694" g_stop="521" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="419" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="520" i_stop="442" i_length="79">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="441" g_stop="333" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="528" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E249288" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1801" e_stop="1644"/>
          <exon e_start="1424" e_stop="1338"/>
          <exon e_start="694" e_stop="521"/>
          <exon e_start="441" e_stop="333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAGGTATTTTCTGAGTTTTGGCTTTAGTTCCTGAATAGGAATTTACAGAAGAAATGGCTTATGTTTCTTCTGATAAACCTACACGACAAAGTCCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAGGTAGCAAAAATTTCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTT</genome_strand>
        <mrna_strand>CAATTGGTGTTGCAAGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAA...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG...............................................................................GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E275091" ref_strand="+" ref_description="SGN-E275091 [cLEN-9-O9]">
      <seq>ttaatgttagcttggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcctggatccggtagtgcaggtgcagatcttgccagtcatatggatgtcgataagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcatttgtgaagatgcagacgttgataaagctgttgagttggctcattctgctgttttctttaaccagggacaatgctgctgtgctggatctcggacattcgtacatgaaagagtatatgatgaatttgtggagaaagccaaagctcgtgctttaaaacgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2057" stop="46"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1757" g_stop="1644" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1424" g_stop="1338" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="201" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1337" i_stop="695" i_length="643">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="694" g_stop="521" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="375" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="520" i_stop="442" i_length="79">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.857" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="441" g_stop="346" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="471" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E275091" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1757" e_stop="1644"/>
          <exon e_start="1424" e_stop="1338"/>
          <exon e_start="694" e_stop="521"/>
          <exon e_start="441" e_stop="346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAGGTATTTTCTGAGTTTTGGCTTTAGTTCCTGAATAGGAATTTACAGAAGAAATGGCTTATGTTTCTTCTGATAAACCTACACGACAAAGTCCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAGGTAGCAAAAATTTCCACTCTTGGAAAATTGCAACCTCTGATGCTTGCTCCAGAATGGAATAAATTTCAAGTATCTGCAGGGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATT</genome_strand>
        <mrna_strand>TTAATGTTAGCTTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG...............................................................................GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370665" ref_strand="+" ref_description="SGN-E370665 [TUS-27-M20]">
      <seq>ttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcctggatccggtagtgcaggtgcagatcttgccagtcatatggatgtcgataagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaacctgtgacattnggagctcgaggaaaatctccttcatcatttgtgagatgcagacgttgataaagctgttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2449" stop="250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2149" g_stop="1644" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1424" g_stop="1338" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="593" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1337" i_stop="695" i_length="643">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="694" g_stop="550" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="735" r_length="142" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E370665" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2149" e_stop="1644"/>
          <exon e_start="1424" e_stop="1338"/>
          <exon e_start="694" e_stop="550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAGGTATTTTCTGAGTTTTGGCTTTAGTTCCTGAATAGGAATTTACAGAAGAAATGGCTTATGTTTCTTCTGATAAACCTACACGACAAAGTCCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATT-GGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGT</genome_strand>
        <mrna_strand>TTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCT-AAACCTGTGACATTNGGAGCTC-GAGGAAAATCTCC-TTCATCATTTGTG-AGATGCAGACGTTGATAAAGCTGTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211596" ref_strand="+" ref_description="SGN-E211596 [cLEC-67-E18]">
      <seq>ccaaggcagtttcagtatcaaatttgaaatgttggattgtataaaggagtgtcagaacacggtatttcagtttcaacatatctctaggtagcaatgaagctatccgtcgctaattctaccccctcttccatcccaaagaagattaaaagaagtaaatagcctaattatagtgtctcattagatagtataatccacatgtagaaaatgaagaaaatcatatctttttcttccagcttccccattaaaagtcaataaacaacataaagaggttatgcatcctgatgtcctttcagcttttgtatttcatgcttgcttttattgatgcagctgtgatgtgtaaagttttctgagtgaatactctggaatagatgagggagactgaaggagcactgacatcttctactacttgttttcgtatagatttaaacagcttggtcctcgacattacttgcatcttttccccctgtaaaatgtttttttttggtgattttttaatttttctgtgatgtctaaattgcgatgtgtctctacatcactccttttggtgtctacagattgcttttacagggtccacagaaactggtaaagctgtcgtaggtgcagctgcaaagagcaacctaaaacctgtgacattggagctcggaggaaaatctcctttcatcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="1548" stop="283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1248" g_stop="583" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E211596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1248" e_stop="583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTT</genome_strand>
        <mrna_strand>CCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245989" ref_strand="+" ref_description="SGN-E245989 [cLEF-54-E10]">
      <seq>aaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacgagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcctggatccggtagtgcaggtgcagatcttgccagtcatatggatgtcgataagattgcttttacagggtccacagaaactggtaaagctgtcgtatgtgcagctgcaaagagcaacctaaaacctgtgacattggagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2466" stop="308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2166" g_stop="1991" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1990" i_stop="1874" i_length="117">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1873" g_stop="1644" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="407" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1424" g_stop="1338" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="494" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1337" i_stop="695" i_length="643">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="694" g_stop="608" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="581" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E245989" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2166" e_stop="1991"/>
          <exon e_start="1873" e_stop="1644"/>
          <exon e_start="1424" e_stop="1338"/>
          <exon e_start="694" e_stop="608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCAC-AGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAGGTATTTTCTGAGTTTTGGCTTTAGTTCCTGAATAGGAATTTACAGAAGAAATGGCTTATGTTTCTTCTGATAAACCTACACGACAAAGTCCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTC</genome_strand>
        <mrna_strand>AAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACGAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGC.....................................................................................................................GTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTATGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550826" ref_strand="+" ref_description="SGN-E550826 [TUS-50-O16]">
      <seq>tcaaatttgaaatgttggattgtataaaggagtgtcagaacacggtatttcagtttcaacatatctctaggtagcaatgaagctatccgtcgctaattctaccccctcttccatcccaaagaagattaaaagaagtaaatagcctaattatagtgtctcattagatagtataatccacatgtagaaaatgaagaaaatcatatctttttcttccagcttccccattaaaagtcaataaacaacataaagaggttatgcatcctgatgtcctttcagcttttgtatttcatgcttgcttttattgatgcagctgtgatgtgtaaagttttctgagtgaatactctggaatagatgagggagactgaaggagcactgacatcttctactacttgttttcgtatagatttaaacagcttggtcctcgacattacttgcatcttttccccctgtaaaatgtttttttttggtgattttttaatttttctgtgatgtctaaattgcgatgtgtctctacatcactccttttggtgtctacagattgcttttacagggtccacagaaactggtaaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="1531" stop="357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1231" g_stop="657" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E550826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1231" e_stop="657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGT</genome_strand>
        <mrna_strand>TCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688547" ref_strand="+" ref_description="SGN-E688547 [t3_tus_50_o16]">
      <seq>tcaaatttgaaatgttggattgtataaaggagtgtcagaacacggtatttcagtttcaacatatctctaggtagcaatgaagctatccgtcgctaattctaccccctcttccatcccaaagaagattaaaagaagtaaatagcctaattatagtgtctcattagatagtataatccacatgtagaaaatgaagaaaatcatatctttttcttccagcttccccattaaaagtcaataaacaacataaagaggttatgcatcctgatgtcctttcagcttttgtatttcatgcttgcttttattgatgcagctgtgatgtgtaaagttttctgagtgaatactctggaatagatgagggagactgaaggagcactgacatcttctactacttgttttcgtatagatttaaacagcttggtcctcgacattacttgcatcttttccccctgtaaaatgtttttttttggtgattttttaatttttctgtgatgtctaaattgcgatgtgtctctacatcactccttttggtgtctacagattgcttttacagggtccacagaaactggtaaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="1531" stop="357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1231" g_stop="657" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E688547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1231" e_stop="657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGT</genome_strand>
        <mrna_strand>TCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542979" ref_strand="+" ref_description="SGN-E542979 [TUS-64-I23]">
      <seq>acattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgtgcagaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcctggatccggtagtgcaggtgcagatcttgccagtcatatggatgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="5022" stop="1043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4722" g_stop="4660" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2977" g_stop="2837" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="204" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2757" g_stop="2615" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="347" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2614" i_stop="2168" i_length="447">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2167" g_stop="2014" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="501" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2013" i_stop="1874" i_length="140">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1873" g_stop="1644" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="731" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="1424" g_stop="1343" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="813" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E542979" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4722" e_stop="4660"/>
          <exon e_start="2977" e_stop="2837"/>
          <exon e_start="2757" e_stop="2615"/>
          <exon e_start="2167" e_stop="2014"/>
          <exon e_start="1873" e_stop="1644"/>
          <exon e_start="1424" e_stop="1343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCG</genome_strand>
        <mrna_strand>ACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTG............................................................................................................................................GTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271439" ref_strand="+" ref_description="SGN-E271439 [cLEM-5-J13]">
      <seq>ttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcctggatccggtagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2449" stop="1075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2149" g_stop="1644" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1424" g_stop="1375" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="556" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E271439" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2149" e_stop="1644"/>
          <exon e_start="1424" e_stop="1375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGC</genome_strand>
        <mrna_strand>TTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248945" ref_strand="+" ref_description="SGN-E248945 [cLEF-49-D24]">
      <seq>aaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2466" stop="1085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2166" g_stop="1991" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1990" i_stop="1874" i_length="117">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1873" g_stop="1644" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="406" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1424" g_stop="1385" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="446" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E248945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2166" e_stop="1991"/>
          <exon e_start="1873" e_stop="1644"/>
          <exon e_start="1424" e_stop="1385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGAT</genome_strand>
        <mrna_strand>AAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGC.....................................................................................................................GTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264189" ref_strand="+" ref_description="SGN-E264189 [cLEG-64-J18]">
      <seq>aaccaaatatttccaggaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaagttggacttccccctggagtcttaaatgtcattcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2483" stop="1087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2183" g_stop="1644" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="540" r_length="540" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1424" g_stop="1387" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="578" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E264189" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2183" e_stop="1644"/>
          <exon e_start="1424" e_stop="1387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGG</genome_strand>
        <mrna_strand>AACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAA...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314892" ref_strand="+" ref_description="SGN-E314892 [cTOA-31-M1]">
      <seq>tgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaatgtcattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2399" stop="1089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2099" g_stop="1644" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1424" g_stop="1389" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="492" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E314892" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2099" e_stop="1644"/>
          <exon e_start="1424" e_stop="1389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCT</genome_strand>
        <mrna_strand>TGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249362" ref_strand="+" ref_description="SGN-E249362 [cLEF-50-K4]">
      <seq>acttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaaccagcagaacaaacaccactctctgccctgtatgtgtcaaagttattccatgaggttggacttccccctggagtcttaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2411" stop="1098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2111" g_stop="1644" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1424" g_stop="1398" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="495" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E249362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2111" e_stop="1644"/>
          <exon e_start="1424" e_stop="1398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAGGTATATAACCATTTTTAGTCTGCACCGGTCGTGAATTCACAGAATTCTAATGAGTACTCATTTGTACTTGTCATTTAGTTATTTCTAGTATGTTGTTTACAAATTTAGTAGTTTCAAATATAGAAGTGGAAACTTTCCACAATTATTGCAGCTCAAATCGAAGATTTCTCCATCTATACAAGATGATAGAATGTAATTTGTCTTCACTCCAACTGTCAGGTTGGACTTCCCCCTGGAGTCTTAAAT</genome_strand>
        <mrna_strand>ACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG...........................................................................................................................................................................................................................GTTGGACTTCCCCCTGGAGTCTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277810" ref_strand="+" ref_description="SGN-E277810 [cLEL-5-M19](-)">
      <seq>agagagtggtgtttgttctgctggttttagtacgacangtgttaccacaagcaagtgcagggccaactttccaggcgaacattaataacggaaaattccagggtattatctgtcctgcaacaccaattggctcatgcagggtctgaacatggtgcaaactgtcagcaggagctgtaagaccatgaattttatcagcccaacctgaataagaaatgtaagcagaaatacttagaaaagcatttagggtgattcagcaaacattagaacgtcaattgatatacaataagtggttattaaactgtcaaaaggaaacataacgccattttctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="1374" stop="2302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1674" g_stop="2006" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E277810" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1674" e_stop="2006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGTGGTGTTTGTTCTGCTGGTTTTAGTACGACA-GTGTTACCACAAGCAAGTGCAGGGCCAACTTTCCAGGCGAACATTAATAACGGAAAATTCCAGGGTATTATCTGTCCTGCAACACCAATTGGCTCATGCAGGGTCTGAACATGGTGCAAACTGTCAGCAGGAGCTGTAAGACCATGAATTTTATCAGCCCAACCTGAATAAGAAATGTAAGCAGAAATACTTAGAAAAGCATTTAGGGTGATTCAGCAAACATTAGAACGTCAATTGATATACAATAAGTGGTTATTAAACTGTCAAAAGGAAACATAACGCCATTTTTCTTATTT</genome_strand>
        <mrna_strand>AGAGAGTGGTGTTTGTTCTGCTGGTTTTAGTACGACANGTGTTACCACAAGCAAGTGCAGGGCCAACTTTCCAGGCGAACATTAATAACGGAAAATTCCAGGGTATTATCTGTCCTGCAACACCAATTGGCTCATGCAGGGTCTGAACATGGTGCAAACTGTCAGCAGGAGCTGTAAGACCATGAATTTTATCAGCCCAACCTGAATAAGAAATGTAAGCAGAAATACTTAGAAAAGCATTTAGGGTGATTCAGCAAACATTAGAACGTCAATTGATATACAATAAGTGGTTATTAAACTGTCAAAAGGAAACATAACGCCA-TTTTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727424" ref_strand="+" ref_description="SGN-E727424 [LA14CF05]">
      <seq>cggttcaattttgaatgctctctctttatgtaaacattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacacggtcgtactaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="5055" stop="1398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4755" g_stop="4660" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2977" g_stop="2837" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="237" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2757" g_stop="2620" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="375" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2619" i_stop="2168" i_length="452">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2167" g_stop="1698" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="845" r_length="470" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E727424" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4755" e_stop="4660"/>
          <exon e_start="2977" e_stop="2837"/>
          <exon e_start="2757" e_stop="2620"/>
          <exon e_start="2167" e_stop="1698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACAATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAA</genome_strand>
        <mrna_strand>CGGTTCAATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACGGTCGTACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314995" ref_strand="+" ref_description="SGN-E314995 [cTOA-31-M2]">
      <seq>tgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgcaggacagataataccctggaattttccgttattaatgttcgcctggaaagttggccctgcacttgcttgtggtaacactgtcgtactaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2399" stop="1398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2099" g_stop="1698" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E314995" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2099" e_stop="1698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAA</genome_strand>
        <mrna_strand>TGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257422" ref_strand="+" ref_description="SGN-E257422 [cLEG-45-M8]">
      <seq>aaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaaggtgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatgagccaattggtgttgccggacagataataacctggaaatttcccctattaatgttcgcctggaaagatggccctgcactttcttgtggtaacactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2298" stop="1408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1998" g_stop="1708" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E257422" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1998" e_stop="1708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGT</genome_strand>
        <mrna_strand>AAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAAGGTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCCGGACAGATAATAACCTGGAAATTTCCCCTATTAATGTTCGCCTGGAAAGATGGCCCTGCACTTTCTTGTGGTAACACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E371149" ref_strand="+" ref_description="SGN-E371149 [TUS-28-L13]">
      <seq>aaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgtgcagaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgcttttctaagtatttctgcttacatttcttattcaggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="5001" stop="1504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4701" g_stop="4660" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2977" g_stop="2837" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="183" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2757" g_stop="2615" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="326" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2614" i_stop="2168" i_length="447">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2167" g_stop="1804" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="690" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E371149" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4701" e_stop="4660"/>
          <exon e_start="2977" e_stop="2837"/>
          <exon e_start="2757" e_stop="2615"/>
          <exon e_start="2167" e_stop="1804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGA</genome_strand>
        <mrna_strand>AAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302394" ref_strand="+" ref_description="SGN-E302394 [cLEW-27-D18]">
      <seq>cattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgtgcagaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttgggctgataaaattcatggtcttacagctcctgctgacagtttgcaccatgttcagaccctgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="5021" stop="1505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4721" g_stop="4660" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2977" g_stop="2837" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="203" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2757" g_stop="2615" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="346" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2614" i_stop="2168" i_length="447">
            <donor d_prob="0.793" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2167" g_stop="2014" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="500" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="2013" i_stop="1874" i_length="140">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1873" g_stop="1805" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="569" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E302394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4721" e_stop="4660"/>
          <exon e_start="2977" e_stop="2837"/>
          <exon e_start="2757" e_stop="2615"/>
          <exon e_start="2167" e_stop="2014"/>
          <exon e_start="1873" e_stop="1805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATG</genome_strand>
        <mrna_strand>CATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTG............................................................................................................................................GTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334199" ref_strand="+" ref_description="SGN-E334199 [cTOD-21-L15]">
      <seq>aggcggatttagaatttgaacttaacatgttcaacctttaaggttcttatcgctgaacacattgatctatcggacatacgtgtttagattttaatattctctcattttagtactttcacatatatatttatttcctgtattatatggtccctctaccgaagttaatttctcagttggtcgttcaactaatagtaattatttgagtaatataagtcactttctttgttgaagaaaattggaatcaagttgaaaaatgacttcttgagataataactatttagcaaagtgaccatatgagaaatcaatccgcctctgcagacaactacagcttgtttaaactcccagtcttacttaagcatgtacaataatgtacttacttaaccaaatatttccaggaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctgggttaagaaaataagaaaaatggcgttatgtttcccttttgacagtttaataaccacttattgtatnatcatttgacgttctaatggtttgctgaatcaccctaaatgcttttctaagtatttctgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2862" stop="1588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2562" g_stop="1888" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E334199" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2562" e_stop="1888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCT-GGTTAAGAAAATAAGAAAAATGGCGTTATGTTT-CCTTTTGACAGTTTAATAACCACTTATTGTAT-ATCAATTGACGTTCTAAT-GTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTA</genome_strand>
        <mrna_strand>AGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCCTTTTGACAGTTTAATAACCACTTATTGTATNATCATTTGACGTTCTAATGGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246766" ref_strand="+" ref_description="SGN-E246766 [cLEF-45-H10]">
      <seq>taaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgtgcagtaaccgaactttcttatctttccatatcctcttccttgtcccaacagtgagaggcggatttagaatttgaacttaacatgttcaacctttaaggaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccctaaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="3186" stop="1608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2886" g_stop="2837" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2757" g_stop="2521" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="287" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2520" i_stop="2168" i_length="353">
            <donor d_prob="0.177" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2167" g_stop="1908" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="547" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E246766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2886" e_stop="2837"/>
          <exon e_start="2757" e_stop="2521"/>
          <exon e_start="2167" e_stop="1908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCT</genome_strand>
        <mrna_strand>TAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAG.................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302285" ref_strand="+" ref_description="SGN-E302285 [cLEW-19-P1]">
      <seq>cgaagttaatttctcagttggtcgttcaactaatagtaattatttgagtaatataagtcactttctttgttgaagaaaattggaatcaagttgaaaaatgacttcttgagataataactatttagcaaagtgaccatatgagaaatcaatccgcctctgcagacaactacagcttgtttaaactcccagtcttacttaagcatgtacaataatgtacttacttaaccaaatatttccaggaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaatgtttgctgaatcaccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2706" stop="1615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2406" g_stop="1915" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E302285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2406" e_stop="1915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCT</genome_strand>
        <mrna_strand>CGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329876" ref_strand="+" ref_description="SGN-E329876 [cTOD-3-H18]">
      <seq>ggatttagaatttgaacttaacatgttcaacctttaaggttcttagcgctgaacacattgatctatcggacatacgtgtttagattttaatattctctcattttagtactttcacatatatatttatttcctgtattatatggtccctctaccgaagttaatttctcagttggtcgttcaactaatagtaattatttgagtaatataagtcactttctttgttgaagaaaattggaatcaagttgaaaaatgacttcttgagataataactatttagcaaagtgaccatatgagaaatcaatccgcctctgcagacaactacagcttgtttaaactcccagtcttacttaagcatgtacaataatgtacttacttaaccaaatatttccaggaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgctggttaagaaaataagaaaaatggcgttatgtttccttttgacagtttaataaccacttattgtatatcaattgacgttctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2858" stop="1632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2558" g_stop="1932" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E329876" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2558" e_stop="1932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAAT</genome_strand>
        <mrna_strand>GGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTAGCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271849" ref_strand="+" ref_description="SGN-E271849 [cLEM-8-F13]">
      <seq>aggtcctctaagatttctgtaagcaactgggaaaatttctttaggtactccaactactatggaaagggtatcagaaggttttgtatcactgccttggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatcctaacactgaccatggcctaaaatgacttgtgcagaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcagatactatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="4999" stop="1715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4699" g_stop="4660" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682">
            <donor d_prob="0.000" d_score="0.95"/>
            <acceptor a_prob="0.901" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2977" g_stop="2837" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="181" r_length="141" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2757" g_stop="2615" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="324" r_length="143" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2614" i_stop="2168" i_length="447">
            <donor d_prob="0.793" d_score="0.86"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2167" g_stop="2015" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="477" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E271849" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4699" e_stop="4660"/>
          <exon e_start="2977" e_stop="2837"/>
          <exon e_start="2757" e_stop="2615"/>
          <exon e_start="2167" e_stop="2015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCT</genome_strand>
        <mrna_strand>AGGTCCTCTAAGATTTCTGTAAGCAACTGGGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTATGGAAAGGGTATCAGAAGGTTTTGTATCACTGCCTTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATCCTAACACTGACCATGGCCTAAAATGACTTGTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726097" ref_strand="+" ref_description="SGN-E726097 [LA10BC03]">
      <seq>gaacaattttgaatgctctctctttatgtaaacattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgaacaagctgcaaatgaagaaataccaatgctcattcgtcttttcaatactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="5053" stop="1718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4753" g_stop="4660" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2977" g_stop="2837" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="235" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2757" g_stop="2620" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="373" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2619" i_stop="2168" i_length="452">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2167" g_stop="2018" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="522" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E726097" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4753" e_stop="4660"/>
          <exon e_start="2977" e_stop="2837"/>
          <exon e_start="2757" e_stop="2620"/>
          <exon e_start="2167" e_stop="2018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTAT</genome_strand>
        <mrna_strand>GAACAATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCA-ATACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261296" ref_strand="+" ref_description="SGN-E261296 [cLEG-68-O17]">
      <seq>aatcaagctgaaaaatgacttcttgagataatagctatttagcaaagtgaccatatgagaaatcaatccgcctctgcagacaactacagcttgtttaaactcccagtcttacttaagcatgtacaataatgtacttacttaaccaaatatttccaggaaaggtcatgtataatgttgcagtttgctgatttgcttgagaggcacagtgatgaacttgcagcacttgagacttgggataagggaaagccttacgatcaacctgcaaacgaagaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2623" stop="1747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2323" g_stop="2047" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E261296" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2323" e_stop="2047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATAC</genome_strand>
        <mrna_strand>AATCAAGCTGAAAAATGACTTCTTGAGATAATAGCTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGATCAACCTGCAAACGAAGAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324375" ref_strand="+" ref_description="SGN-E324375 [cTOC-6-H13]">
      <seq>gaccatggcctaaaatgggtggtgcagtaaccgaactttctggggtttccatatcctcttccttggcccaacagtgagaggcggatttagaatttgaacttaacatgttcaacctttaaggttcttatcgctgaacacattgatctatcggacatacgtgtttagattttaatattctctcattttagtactttcacatatatatttatttcctgtattatatggtccctctaccgaagttaatttctcagttggtcgttcaactaatagtaattatttgagtgatataagtcactttctttgttgaagaaaattggaatcaagttgaaaaatgacttcttgagataataactatttagcaaagtgaccatatgagaaatcaatccgcctctgcagacaactacagcttgtttaaactcccagtcttacttaagcatgtacaataatgtacttacttaaccaaatatttccaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="2940" stop="1865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2640" g_stop="2165" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E324375" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2640" e_stop="2165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAA</genome_strand>
        <mrna_strand>GACCATGGCCTAAAATGGGTGGTGCAGTAACCGAACTTTCTGGGGTTTCCATATCCTCTTCCTTGGCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTGATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336972" ref_strand="+" ref_description="SGN-E336972 [cTOE-5-D2]">
      <seq>acggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgtgcagtaaccgaactttcttatctttccatatcctcttccttgtcccaacagtgagaggcggatttagaatttgaacttaacatgttcaacctttaaggttcttatcgctgaacacattgatctatcggacatacgtgtttagattttaatattctctcattttagtactttcacatatatatttatttcctgtattatatggtccctctaccgaagttaatttctcagttggtcgttcaactaatagtaattatttgagtaatataagtcactttctttgttgaagaaaattggaatcaagttgaaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="3010" stop="2006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2710" g_stop="2306" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E336972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2710" e_stop="2306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGA</genome_strand>
        <mrna_strand>ACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271992" ref_strand="+" ref_description="SGN-E271992 [cLEM-8-K22]">
      <seq>attttgaatgctctctctttatgtaaacattatgctttgtgtgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcataaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcaacttctcattaatggacagtttgttgatgcatcctcaaggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaatatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaagaccatggcctaaaatgacttgtgcagtaaccgaactttcttatctttccatatcctcttccttgtcccaacagtgagaggcggatttagaatttgaacttaacatgttcaacctttaaagttcttatcgctgaacacattgatctatctgacatacgtgtttagattttaatattctctcattttagtactttcacatatatatttatttcctgtattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="5048" stop="2119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4748" g_stop="4660" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.901" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2977" g_stop="2837" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="230" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2757" g_stop="2419" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="569" r_length="339" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E271992" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4748" e_stop="4660"/>
          <exon e_start="2977" e_stop="2837"/>
          <exon e_start="2757" e_stop="2419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATA</genome_strand>
        <mrna_strand>ATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTGTGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCATAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAACTTCTCATTAATGGACAGTTTGTTGATGCATCCTCAA...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAATATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAAGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAAGTTCTTATCGCTGAACACATTGATCTATCTGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256721" ref_strand="+" ref_description="SGN-E256721 [cLEG-40-D22]">
      <seq>aattttgaatgctctctctttatgtaaacattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccatggcctaaaatgacttgtgcagtaaccgaactttcttatctttccatatcctcttccttgtcccaacagtgagaggcggatttagaatttgaacttaacatgttcaacctttaaggttcttatcgctgaacacattgatctatcggacatacgtgtttagattttaatattctctcattttagtactttcacatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="5049" stop="2138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4749" g_stop="4660" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2977" g_stop="2837" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="231" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2757" g_stop="2438" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="551" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E256721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4749" e_stop="4660"/>
          <exon e_start="2977" e_stop="2837"/>
          <exon e_start="2757" e_stop="2438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATAT</genome_strand>
        <mrna_strand>AATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E258160" ref_strand="+" ref_description="SGN-E258160 [cLEG-49-K13]">
      <seq>ttttgaatgctctctctttatgtaaacattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggtactccaactactggagaaagggtatcagaaggttttgtagcagtgccgtggtgcatgaaaagccaatcactccacctgttgagggtaaatataatcagcttctcattaatggacagtttgttgatgcaggctcagggaaagactttcctacatttggacctcgaacacgcgaagctattactacggttgcggaggccgacactgaagatgtcaaccgtgcagtctttgctgcccgtaaagcatttgatgaacgaccatggcctaaaatgacttgtgcagtaaccgaactttcttatctttccatatcctcttccttgtccccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="5047" stop="2268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4747" g_stop="4660" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2977" g_stop="2837" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="229" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.750" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2757" g_stop="2568" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="419" r_length="190" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E258160" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4747" e_stop="4660"/>
          <exon e_start="2977" e_stop="2837"/>
          <exon e_start="2757" e_stop="2568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGG-AAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACA</genome_strand>
        <mrna_strand>TTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAAAGCCAATCACTCCACCTGTTGAGGGTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGGCTCAG...............................................................................GGAAAGAC-TTTCCTACATTTGGACCTCGAACACGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAACGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217486" ref_strand="-" ref_description="SGN-E217486 [cLEL-21-F2](-)">
      <seq>tttggaatgctctctctttatgtgaacattatgctttgtatgaaataaaggtcctctaagatttctgtaagcaactttgaaaatttctttaggaactccaactactggagaaagggtatcagaaggttttgtagcaatgccgtggtgcatgaagagccaatcactccacctgttgaggttaaatataatcagcttctcattaatggacagtttgttgatgcagcctcagggaagacatttcctacatttgaccctcgaacaggcgaagctattactacggttgcggaggccgacactgaatatgtaaaccgtgcagtctttgctgcccgtaaagcatttgatgaaggaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="5047" stop="2335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4747" g_stop="4660" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2977" g_stop="2837" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="229" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2757" g_stop="2635" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="352" r_length="123" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E217486" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217486" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4747" e_stop="4660"/>
          <exon e_start="2977" e_stop="2837"/>
          <exon e_start="2757" e_stop="2635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCTGTAAGTTCTTCTTTATTTAAATTCCGCAACTATGAAAATGGTAAGGAAAGAGTATGATTGTAGCTTCTCTTGTTCACTGATGACATGACAGTGTGAATAATTTTGATCAACTATGATTTAATCAGTTAAAAGTAATCTATTTATCTTATTTTTGAAATGACTAGTTTGGCTTTAGATGGTACTATAAAGTAGACCTCATTATTTTAGGTTACGCAGAGTGTTTACTTGATTGTCTAAACAAAATTTAGAAATAAATTTTGAACCTAAGCTAAACACAGAGTTAAAGGGTTTCATTTAATCATTAAATTTGTCCTCCGTTATAGTTCTTTTAAGGGAAAGCTCCGAATCAACCCATTTTATCCAAAAATGAAAAGATAAAACCACCCGCCCCTAATATAACCCGCATCCGACCAACTAACATGTAAAACCCACCCAAGTCCAAAGAAAGCAAAACTAACCCTTTAACGGCGGCGGCGGCGGCAGCGACGGCGCAACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTATTGGGTGGACAAACTCACCAAGAGTAATTAAAAATAAATATGGTCTGTTTTGAGGTTGAAGTTTAATTCAGGTGACATAGTACTTTGCTGGGTTTTGAGGAAACTGGAACAGTATTTGTTTTTTAATCATAATGTTGAGTTTATTTAATTTGGTTCGGATTTTAATTTGATGGGTTTGCGGTCGGATTCATTCTAACCAATAAAAGAATGTTGATGGTTATTTTATCTCCAATAACTATATTGCAAGTACTTGTAAACCAAAAATACATTCACAGATTATAATTAAAGTAGTCTTTTTCTAATCAGAAGAATTATTTTCACCCGTGTTTTCTTTCTTTGGTATCTTGATGATTGAACAAGCTAACTGTGTCTTGATATTACCCCACTTGATTTGTTTGATATTTTAACTGATTTTCTTGAGAAAGGAGCTAGCTAATTATAGGTTCTGCAATTTCAATCTACAGTTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAGGTTGACCTAAAGTCTTTTCATTTATATGTTATTTCTTCTATAAATCTCAAGTGTAATATGGAGAATTCTACGTCTTCAGGGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCAT</genome_strand>
        <mrna_strand>TTTGGAATGCTCTCTCTTTATGTGAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGAACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAATGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG...............................................................................GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAATATGTAAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333396" ref_strand="+" ref_description="SGN-E333396 [cTOD-20-D23]">
      <seq>aacttttttccatgagttgatttccaagaaaatggaaataactttgcccgcattggatctaactaacaacttattgttctacccaagtccaagaaatcaaaaacaaacccatataatggtagcgtggcggcggcgcgtcttcttcaatggtttccaggagaaggggaaataactttacccacatccgacccaactaacaagtaaaccatctttcccgttatagttctacccaggtccaagaaggcaaatacaaacccctctgggcgtggcagcggcgcatcttcttccatgtcttccaagaaaagggaaaataactttgccttttcccatcttctacagttcccttaattttgcatttttttagaatctaactcaacagtccctttatggacttcatcacttctaaccaaacacaaatccaactaagaagagataaaactcaataaaatgaatagcgtcccagaggaaaatctcaacacctgagtagacataaaaaagaatcaacttagcagttaaataaaatatcacatcatcaacagcagaagttgccgcctgaatcgccacgaacccaaccacaaaagcagagacaaatttcccttgctgaaagaatcagcccaaatccactacattcttgtactgcaattccaattacacttgcctcgaaattgccgcaaatacagtaacttggtgacttttgangaagatggaaaaattgattcttttctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="4467" stop="3141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4167" g_stop="3441" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E333396" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4167" e_stop="3441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTAT</genome_strand>
        <mrna_strand>AACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGANGAAGATGGAAAAATTGATTCTTTTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253442" ref_strand="+" ref_description="SGN-E253442 [cLEG-24-D6]">
      <seq>acctatcatttttttgaaaaattaactttaatgaaagtgaaatccaaaccaggtgagagatataaaaaaaaaaaaaggaaaagagagagtacctaaattaagatgccagtccattcttttgcacataaacagtagtaaagaccgtagtataaataccttgaagtgcgaagctgagaaatgatccgtcgtgtatgagtattcattgctggagaccgagaaaattaaatagagatggagaagaagagataagaatcggagcaacgtcaagaattcagataccagagtaatttttggaccagagaccagatttgctgctgctaaaaatgcagagaaaaatcaggctcatctggcttaaacagcttgggcatttttaagctagaagaagaatcagccatcttctgttctattcctcttctcgtattagtagcaaatcgtttggccaaaattgtagctccaagttgttgggaaccacgagaaccactggctactaacggttgctcaggaccagcgtcatcaaaactttgctcattgtagttaccctcatcattaggatcttgattataataatagctctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="7779" stop="9402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8079" g_stop="8400" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8401" i_stop="8856" i_length="456">
            <donor d_prob="0.967" d_score="0.92"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8857" g_stop="9102" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="577" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E253442" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8079" e_stop="8400"/>
          <exon e_start="8857" e_stop="9102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTATCATTTTTTTGAAAAATTAACTTTAATGAAAGTGAAATCCAAA-CAGGTGAGAGATATAAAAAAAAAAAAAGGAAAAGAGAGAGTA-CTAAATTAAGATG-CAGTCCATTCTTTTGCACATAAACAGTAGTAAAGA-CGTAGTATAAATA-CTTGAAGTGCGAAGCTGAGAAATGATCCGTCGTGTATGAGTATTCATTGCTGGAGA-CGAGAAAATTAAATAGAGATGGAGAAGAAGAGATAAGAATCGGAGCAACGTCAAGAATTCAGATA-CAGAGTAATTTTTGGA-CAGAGA-CAGATTTGCTGCTGCTAAAAATGCAGAGGTAGTCTAACTACTTGCACGTCATCAATTAGCTGATTCATTAGATATAAGCTTATCCCTTTTCTTCTCTGTGTTCCATTCCACTATTCCTTTCCTGAACCCTATGAAAAAAATATTGCCTTCTTTTTTTTCTGTCCAATCAAAAACAATCTAATATGTACAGGTAAAACTTACCCACAATATGTTTGGCGTAAACATCCGGTACGGGTAAGTTTTTTCCAATATTACCTTTGGAACTAGATAACTTTTAGGCACAATCAACTAGAAAAGAAGGTTGTATTTCACATGATTGAAAAGGGAATAATGTTGTAATCAAAAAGGCCTATAGTTCCTGAAATTTACAAAAAAGTTTTAAAAAAAAGGGTACTAGCTTTGTCATTACTCACCAGTCACCAGTACCTTTCAGTAATGCAAGGTGTTCTAACTAATTACATATGATGTGGCCTTCATTCTGCAGAAAAATCAGGCTCATCTGGCTTAAACAGCTTGGGCATTTTTAAGCTAGAAGAAGAATCAGCCATCTTCTGTTCTATTCCTCTTCTCGTATTAGTAGCAAATCGTTTGGCCAAAATTGTAGCTCCAAGTTGTTGGGAACCACGAGAACCACTGGCTACTAACGGTTGCTCAGGACCAGCGTCATCAAAACTTTGCTCATTGTAGTTACCCTCATCATTAGGATCTTGATTATAATAATAGCTCTCTT</genome_strand>
        <mrna_strand>ACCTATCATTTTTTTGAAAAATTAACTTTAATGAAAGTGAAATCCAAACCAGGTGAGAGATATAAAAAAAAAAAAAGGAAAAGAGAGAGTACCTAAATTAAGATGCCAGTCCATTCTTTTGCACATAAACAGTAGTAAAGACCGTAGTATAAATACCTTGAAGTGCGAAGCTGAGAAATGATCCGTCGTGTATGAGTATTCATTGCTGGAGACCGAGAAAATTAAATAGAGATGGAGAAGAAGAGATAAGAATCGGAGCAACGTCAAGAATTCAGATACCAGAGTAATTTTTGGACCAGAGACCAGATTTGCTGCTGCTAAAAATGCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATCAGGCTCATCTGGCTTAAACAGCTTGGGCATTTTTAAGCTAGAAGAAGAATCAGCCATCTTCTGTTCTATTCCTCTTCTCGTATTAGTAGCAAATCGTTTGGCCAAAATTGTAGCTCCAAGTTGTTGGGAACCACGAGAACCACTGGCTACTAACGGTTGCTCAGGACCAGCGTCATCAAAACTTTGCTCATTGTAGTTACCCTCATCATTAGGATCTTGATTATAATAATAGCTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308495" ref_strand="+" ref_description="SGN-E308495 [cLEY-21-O22]">
      <seq>tggagacgagaaaattaaatagagatggagaagaagagataagaatcggagcaacgtcaagaattcagatacagagtaatttttggacagagacagatttgctgctgctaaaaatgcagaggtcttcagctcgaagtgcaaatgcttcaacttcagtaagtgttctcactgttcgagttgaagctggcaactgcgttgagttaggcagtaaggcccaagtcagcaattcttcaccacaaaaatcattaggtccaagggtgattgaattgaagaatccagatcttcccccatttgtcgtggagctctctagttgtcccctgatgataaagagcatctcactcactggatcatcttctagaacaacatatgtgcccattatgctcagggtcgacactaggcgttcacatattgcatcaagcaactggtcatccatttgctcaaaaaatggaacctgcgcagtcaggagattttggggtctctaaagcttagcaaacaaaagtggatgggtttaggcatttacagagtaaaaatacaactccaaacatgtggctgatgcaaatacaaaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="7980" stop="10010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8280" g_stop="8400" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8401" i_stop="9262" i_length="862">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9263" g_stop="9710" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="569" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E308495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8280" e_stop="8400"/>
          <exon e_start="9263" e_stop="9710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGACGAGAAAATTAAATAGAGATGGAGAAGAAGAGATAAGAATCGGAGCAACGTCAAGAATTCAGATACAGAGTAATTTTTGGACAGAGACAGATTTGCTGCTGCTAAAAATGCAGAGGTAGTCTAACTACTTGCACGTCATCAATTAGCTGATTCATTAGATATAAGCTTATCCCTTTTCTTCTCTGTGTTCCATTCCACTATTCCTTTCCTGAACCCTATGAAAAAAATATTGCCTTCTTTTTTTTCTGTCCAATCAAAAACAATCTAATATGTACAGGTAAAACTTACCCACAATATGTTTGGCGTAAACATCCGGTACGGGTAAGTTTTTTCCAATATTACCTTTGGAACTAGATAACTTTTAGGCACAATCAACTAGAAAAGAAGGTTGTATTTCACATGATTGAAAAGGGAATAATGTTGTAATCAAAAAGGCCTATAGTTCCTGAAATTTACAAAAAAGTTTTAAAAAAAAGGGTACTAGCTTTGTCATTACTCACCAGTCACCAGTACCTTTCAGTAATGCAAGGTGTTCTAACTAATTACATATGATGTGGCCTTCATTCTGCAGAAAAATCAGGCTCATCTGGCTTAAACAGCTTGGGCATTTTTAAGCTAGAAGAAGAATCAGCCATCTTCTGTTCTATTCCTCTTCTCGTATTAGTAGCAAATCGTTTGGCCAAAATTGTAGCTCCAAGTTGTTGGGAACCACGAGAACCACTGGCTACTAACGGTTGCTCAGGACCAGCGTCATCAAAACTTTGCTCATTGTAGTTACCCTCATCATTAGGATCTTGATTATAATAATAGCTCTCTTGTAGAGCCAACTCGTATTCCATCTTTTTCTTCTTATACCTTCTCCATGCAGCCTGTATAAAACAAGCACCCCATGTTCTCCACTGATGAGAATAGTACCTAAATGCATGCTGTAGCTTCATGCTGTGAAGACGTTTAAATTGAACTGCAAAAAATTTCAGGTCTTCAGCTCGAAGTGCAAATGCTTCAACTTCAGTAAGTGTTCTCACTGTTCGAGTTGAAGCTGGCAACTGCGTTGAGTTAGGCAGTAAGGCCCAAGTCAGCAATTCTTCACCACAAAAATCATTAGGTCCAAGGGTGATTGAATTGAAGAATCCAGATCTTCCCCCATTTGTCGTGGAGCTCTCTAGTTGTCCCCTGATGATAAAGAGCATCTCACTCACTGGATCATCTTCTAGAACAACATATGTGCCCATTATGCTCAGGGTCGACACTAGGCGTTCACATATTGCATCAAGCAACTGGTCATCCATTTGCTCAAAAAATGGAACCTGCGCAGTCAGGAGATTTTGGGGTCTCTAAAGCTTAGCAAACAAAAGTGGATGGGTTTAGGCATTTACAGAGTAAAAATACAACTCCAAACATGTGGCTGATGCAAATACAAAACGT</genome_strand>
        <mrna_strand>TGGAGACGAGAAAATTAAATAGAGATGGAGAAGAAGAGATAAGAATCGGAGCAACGTCAAGAATTCAGATACAGAGTAATTTTTGGACAGAGACAGATTTGCTGCTGCTAAAAATGCAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTCAGCTCGAAGTGCAAATGCTTCAACTTCAGTAAGTGTTCTCACTGTTCGAGTTGAAGCTGGCAACTGCGTTGAGTTAGGCAGTAAGGCCCAAGTCAGCAATTCTTCACCACAAAAATCATTAGGTCCAAGGGTGATTGAATTGAAGAATCCAGATCTTCCCCCATTTGTCGTGGAGCTCTCTAGTTGTCCCCTGATGATAAAGAGCATCTCACTCACTGGATCATCTTCTAGAACAACATATGTGCCCATTATGCTCAGGGTCGACACTAGGCGTTCACATATTGCATCAAGCAACTGGTCATCCATTTGCTCAAAAAATGGAACCTGCGCAGTCAGGAGATTTTGGGGTCTCTAAAGCTTAGCAAACAAAAGTGGATGGGTTTAGGCATTTACAGAGTAAAAATACAACTCCAAACATGTGGCTGATGCAAATACAAAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279612" ref_strand="+" ref_description="SGN-E279612 [cLER-5-C15]">
      <seq>acaagagagctattattataatcaagatcctaatgatgagggtaactacaatgagcaaagttttgatgacgctggtcctgagcaaccgttagtagccagtggttctcgtggttcccaacaacttggagctacaattttggccaaacgatttgctactaatacgagaagaggaatagaacagaagatggctgattcttcttctagcttaaaaatgcccaagctgtttaagccagatgagcctgatttttctgcagaatgaaggccacatcatatgtaattagttagaacaccttgcattactgaaaggtactggtgactggtgagtaatgacaaagctagtacccttttttttaaaacttttttgtaaatttcaggaactataggcctttttgattacaacattattcccttttcaatcatgtgaaatacaaccttcttttctagttgattgtgcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="9404" stop="8345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9104" g_stop="8645" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8644" i_stop="8531" i_length="114">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8530" g_stop="8525" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="466" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E279612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9104" e_stop="8645"/>
          <exon e_start="8530" e_stop="8525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAGAGCTATTATTATAATCAAGATCCTAATGATGAGGGTAACTACAATGAGCAAAGTTTTGATGACGCTGGTCCTGAGCAACCGTTAGTAGCCAGTGGTTCTCGTGGTTCCCAACAACTTGGAGCTACAATTTTGGCCAAACGATTTGCTACTAATACGAGAAGAGGAATAGAACAGAAGATGGCTGATTCTTCTTCTAGCTTAAAAATGCCCAAGCTGTTTAAGCCAGATGAGCCTGATTTTTCTGCAGAATGAAGGCCACATCATATGTAATTAGTTAGAACACCTTGCATTACTGAAAGGTACTGGTGACTGGTGAGTAATGACAAAGCTAGTACCCTTTTTTTTAAAACTTTTTTGTAAATTTCAGGAACTATAGGCCTTTTTGATTACAACATTATTCCCTTTTCAATCATGTGAAATACAACCTTCTTTTCTAGTTGATTGTGCCTAAAAGTTATCTAGTTCCAAAGGTAATATTGGAAAAAACTTACCCGTACCGGATGTTTACGCCAAACATATTGTGGGTAAGTTTTACCTGTACATATTAGATTGTTTTTGATTGGACAGAAAAAA</genome_strand>
        <mrna_strand>ACAAGAGAGCTATTATTATAATCAAGATCCTAATGATGAGGGTAACTACAATGAGCAAAGTTTTGATGACGCTGGTCCTGAGCAACCGTTAGTAGCCAGTGGTTCTCGTGGTTCCCAACAACTTGGAGCTACAATTTTGGCCAAACGATTTGCTACTAATACGAGAAGAGGAATAGAACAGAAGATGGCTGATTCTTCTTCTAGCTTAAAAATGCCCAAGCTGTTTAAGCCAGATGAGCCTGATTTTTCTGCAGAATGAAGGCCACATCATATGTAATTAGTTAGAACACCTTGCATTACTGAAAGGTACTGGTGACTGGTGAGTAATGACAAAGCTAGTACCCTTTTTTTTAAAACTTTTTTGTAAATTTCAGGAACTATAGGCCTTTTTGATTACAACATTATTCCCTTTTCAATCATGTGAAATACAACCTTCTTTTCTAGTTGATTGTGCCTAAAA..................................................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374138" ref_strand="+" ref_description="SGN-E374138 [TUS-33-L1](-)">
      <seq>attcaatcacccttggacctaatattttttgtgggaagaaatgctgacatgggccttactgcctaactcaacgcagttgccagcttcaactcgaacagtgagaacacttactgaagttgaagcatttgcacttcgagctgaagacctgaaattttttgcagttcaatttaaacgtcttcacagcatgaagctacagcatgcatttaggtactattctcatcagtggagaacatggggtgcttgttttatagaggctgcatggagaaggtataagaagaaaaagatggaacacgagttggctctacaagagagctattattataatcaagatcctaatgatgagggtaactacaatgagcaaagttttgatgacgctggtcctgagcaaccgttagtagccagtggttctcgtggttcccaacaacttggagctacaattttggccaaacgatttgctactaatacgagacgaggaatagaacagaagatggctgattcttcttctagcttaaaaatgcccaagctgtttaagccagatgagcctgatttttctgcagaatgaaggccacattatatgtaattagttagaacaccttgcattactgaaaggtactggtgactggtgagtaatgacaaagctagtacccttttttttaaaacttttttgtaaatttcaggaactataggcctttttgattacaacattattcccttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="9708" stop="8389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9408" g_stop="8685" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E374138" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9408" e_stop="8685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAATCACCCTTGGACCTAATGATTTTTGTGGTGAAGAATTGCTGACTTGGGCCTTACTGCCTAACTCAACGCAGTTGCCAGCTTCAACTCGAACAGTGAGAACACTTACTGAAGTTGAAGCATTTGCACTTCGAGCTGAAGACCTGAAATTTTTTGCAGTTCAATTTAAACGTCTTCACAGCATGAAGCTACAGCATGCATTTAGGTACTATTCTCATCAGTGGAGAACATGGGGTGCTTGTTTTATACAGGCTGCATGGAGAAGGTATAAGAAGAAAAAGATGGAATACGAGTTGGCTCTACAAGAGAGCTATTATTATAATCAAGATCCTAATGATGAGGGTAACTACAATGAGCAAAGTTTTGATGACGCTGGTCCTGAGCAACCGTTAGTAGCCAGTGGTTCTCGTGGTTCCCAACAACTTGGAGCTACAATTTTGGCCAAACGATTTGCTACTAATACGAGAAGAGGAATAGAACAGAAGATGGCTGATTCTTCTTCTAGCTTAAAAATGCCCAAGCTGTTTAAGCCAGATGAGCCTGATTTTTCTGCAGAATGAAGGCCACATCATATGTAATTAGTTAGAACACCTTGCATTACTGAAAGGTACTGGTGACTGGTGAGTAATGACAAAGCTAGTACCCTTTTTTTTAAAACTTTTTTGTAAATTTCAGGAACTATAGGCCTTTTTGATTACAACATTATTCCCTTTTCAATCAT</genome_strand>
        <mrna_strand>ATTCAATCACCCTTGGACCTAATATTTTTTGTGG-GAAGAAATGCTGACATGGGCCTTACTGCCTAACTCAACGCAGTTGCCAGCTTCAACTCGAACAGTGAGAACACTTACTGAAGTTGAAGCATTTGCACTTCGAGCTGAAGACCTGAAATTTTTTGCAGTTCAATTTAAACGTCTTCACAGCATGAAGCTACAGCATGCATTTAGGTACTATTCTCATCAGTGGAGAACATGGGGTGCTTGTTTTATAGAGGCTGCATGGAGAAGGTATAAGAAGAAAAAGATGGAACACGAGTTGGCTCTACAAGAGAGCTATTATTATAATCAAGATCCTAATGATGAGGGTAACTACAATGAGCAAAGTTTTGATGACGCTGGTCCTGAGCAACCGTTAGTAGCCAGTGGTTCTCGTGGTTCCCAACAACTTGGAGCTACAATTTTGGCCAAACGATTTGCTACTAATACGAGACGAGGAATAGAACAGAAGATGGCTGATTCTTCTTCTAGCTTAAAAATGCCCAAGCTGTTTAAGCCAGATGAGCCTGATTTTTCTGCAGAATGAAGGCCACATTATATGTAATTAGTTAGAACACCTTGCATTACTGAAAGGTACTGGTGACTGGTGAGTAATGACAAAGCTAGTACCCTTTTTTTTAAAACTTTTTTGTAAATTTCAGGAACTATAGGCCTTTTTGATTACAACATTATTCCCTTTTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E357653" ref_strand="+" ref_description="SGN-E357653 [cTOS-24-A18]">
      <seq>tccactgatgagaatagtacctaaatgcatgctgtagcttcatgctgtgaagacgtttaaattgaactgcaaaaaatttcaggtcttcagctcgaagtgcaaatgcttcaacttcagtaagtgttctcactgttcgagttgaagctggcaactgcgttgagttaggcagtaaggcccaagtcagcaattcttcaccacaaaaatcattaggtccaagggtgattgaattgaagaatccagatcttcccccatttgtcgtggagctctctagttgtcccctgatgataaagagcatctcactcactggatcatcttctagaacaacatatgtgcccattatgctcagggtcgacactaggcgttcacatattgcatcaagcaactggtcatccatttgctcaaaaaatggaacctgcgcagtcaggagattttggggtctctaaagcttagcaaacaaaagtggatgggtttaggcatttacagagtaaaaatacaactccaaacatgtggctgatgcaaatacaaaacgtaaggtacatcacaagacaagtcaaagcttaaattgatgactgaagagatggaactattttatttattcattcactaatacttattagtacttatttcttttgctcaaatctttaactactggcaaatatttctgcctgcagctcttttccttaatggttgcctccctgaagtatttcattnccagagaaagtgaatactgcnaacaccacatattacatcatctggctatgccatatatatatatatatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="8881" stop="10264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9181" g_stop="9964" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="783" r_length="783" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E357653" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9181" e_stop="9964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTGATGAGAATAGTACCTAAATGCATGCTGTAGCTTCATGCTGTGAAGACGTTTAAATTGAACTGCAAAAAATTTCAGGTCTTCAGCTCGAAGTGCAAATGCTTCAACTTCAGTAAGTGTTCTCACTGTTCGAGTTGAAGCTGGCAACTGCGTTGAGTTAGGCAGTAAGGCCCAAGTCAGCAATTCTTCACCACAAAAATCATTAGGTCCAAGGGTGATTGAATTGAAGAATCCAGATCTTCCCCCATTTGTCGTGGAGCTCTCTAGTTGTCCCCTGATGATAAAGAGCATCTCACTCACTGGATCATCTTCTAGAACAACATATGTGCCCATTATGCTCAGGGTCGACACTAGGCGTTCACATATTGCATCAAGCAACTGGTCATCCATTTGCTCAAAAAATGGAACCTGCGCAGTCAGGAGATTTTGGGGTCTCTAAAGCTTAGCAAACAAAAGTGGATGGGTTTAGGCATTTACAGAGTAAAAATACAACTCCAAACATGTGGCTGATGCAAATACAAAACGTAAGGTACATCACAAGACAAGTCAAAGCTTAAATTGATGACTGAAGAGATGGAACTATTTTATTTATTCATTCACTAATACTTATTAGTACTTATTTCTTTTGCTCAAATCTTTAACTACTGGCAAATATTTCTGCCTGCAGCTCTTTTCCTTAATGTTTGCCTCCTGAAAGTATTTCAATTCCAAGAGAAGTGAAATACTGCAAACACCACATATTACATCATCTGGCTATGCCATATATATATATATATCTAA</genome_strand>
        <mrna_strand>TCCACTGATGAGAATAGTACCTAAATGCATGCTGTAGCTTCATGCTGTGAAGACGTTTAAATTGAACTGCAAAAAATTTCAGGTCTTCAGCTCGAAGTGCAAATGCTTCAACTTCAGTAAGTGTTCTCACTGTTCGAGTTGAAGCTGGCAACTGCGTTGAGTTAGGCAGTAAGGCCCAAGTCAGCAATTCTTCACCACAAAAATCATTAGGTCCAAGGGTGATTGAATTGAAGAATCCAGATCTTCCCCCATTTGTCGTGGAGCTCTCTAGTTGTCCCCTGATGATAAAGAGCATCTCACTCACTGGATCATCTTCTAGAACAACATATGTGCCCATTATGCTCAGGGTCGACACTAGGCGTTCACATATTGCATCAAGCAACTGGTCATCCATTTGCTCAAAAAATGGAACCTGCGCAGTCAGGAGATTTTGGGGTCTCTAAAGCTTAGCAAACAAAAGTGGATGGGTTTAGGCATTTACAGAGTAAAAATACAACTCCAAACATGTGGCTGATGCAAATACAAAACGTAAGGTACATCACAAGACAAGTCAAAGCTTAAATTGATGACTGAAGAGATGGAACTATTTTATTTATTCATTCACTAATACTTATTAGTACTTATTTCTTTTGCTCAAATCTTTAACTACTGGCAAATATTTCTGCCTGCAGCTCTTTTCCTTAATGGTTGCCTCCCTGAAGTATTTC-ATTNCCAGAGAAAGTGAATACTGCNAACACCACATATTACATCATCTGGCTATGCCATATATATATATATATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318767" ref_strand="+" ref_description="SGN-E318767 [cTOB-11-K13]">
      <seq>tttttactaataagtattagtgaatgaataaataaaatagttccatctcttcagtcatcaatttaagctttgacttgtcttgtgatgtaccttacgttttgtatttgcatcagccacatgtttggagttgtatttttactctgtaaatgcctaaacccatccacttttgtttgctaagctttagagaccccaaaatctcctgactgcgcaggttccattttttgagcaaatggatgaccagttgcttgatgcaatatgtgaacgcctagtgtcgaccctgagcataatgggcacatatgttgttctagaagatgatccagtgagtgagatgctctttatcatcaggggacaactagagagctccacgacaaatgggggaagatctggattcttcaattcaatcacccttggacctaatgatttttgcggtgaagaattgctgacttgggccttactgcctaactcaacgcagttgccagcttcaactcgaacagtgagaacacttactgaagttgaagcatttgcacttcgagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="10099" stop="8968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9803" g_stop="9268" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E318767" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9803" e_stop="9268"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTACTAATAAGTATTAGTGAATGAATAAATAAAATAGTTCCATCTCTTCAGTCATCAATTTAAGCTTTGACTTGTCTTGTGATGTACCTTACGTTTTGTATTTGCATCAGCCACATGTTTGGAGTTGTATTTTTACTCTGTAAATGCCTAAACCCATCCACTTTTGTTTGCTAAGCTTTAGAGACCCCAAAATCTCCTGACTGCGCAGGTTCCATTTTTTGAGCAAATGGATGACCAGTTGCTTGATGCAATATGTGAACGCCTAGTGTCGACCCTGAGCATAATGGGCACATATGTTGTTCTAGAAGATGATCCAGTGAGTGAGATGCTCTTTATCATCAGGGGACAACTAGAGAGCTCCACGACAAATGGGGGAAGATCTGGATTCTTCAATTCAATCACCCTTGGACCTAATGATTTTTGTGGTGAAGAATTGCTGACTTGGGCCTTACTGCCTAACTCAACGCAGTTGCCAGCTTCAACTCGAACAGTGAGAACACTTACTGAAGTTGAAGCATTTGCACTTCGAGCTG</genome_strand>
        <mrna_strand>TTTTTACTAATAAGTATTAGTGAATGAATAAATAAAATAGTTCCATCTCTTCAGTCATCAATTTAAGCTTTGACTTGTCTTGTGATGTACCTTACGTTTTGTATTTGCATCAGCCACATGTTTGGAGTTGTATTTTTACTCTGTAAATGCCTAAACCCATCCACTTTTGTTTGCTAAGCTTTAGAGACCCCAAAATCTCCTGACTGCGCAGGTTCCATTTTTTGAGCAAATGGATGACCAGTTGCTTGATGCAATATGTGAACGCCTAGTGTCGACCCTGAGCATAATGGGCACATATGTTGTTCTAGAAGATGATCCAGTGAGTGAGATGCTCTTTATCATCAGGGGACAACTAGAGAGCTCCACGACAAATGGGGGAAGATCTGGATTCTTCAATTCAATCACCCTTGGACCTAATGATTTTTGCGGTGAAGAATTGCTGACTTGGGCCTTACTGCCTAACTCAACGCAGTTGCCAGCTTCAACTCGAACAGTGAGAACACTTACTGAAGTTGAAGCATTTGCACTTCGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374139" ref_strand="+" ref_description="SGN-E374139 [TUS-33-L1]">
      <seq>ttttcactcactgtttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagataatcttccggaatccgattttgatatcggactccgccatggaagatgagtagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctccgagctctagggttttcggccggggtgagcttgttatggacccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagcaaaaagaaatggttcgggtcattccaaaagtacacttgcacttatcgttctcatacaatatgtgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="13621" stop="12292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13321" g_stop="12761" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12760" i_stop="12689" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12688" g_stop="12592" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="658" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E374139" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13321" e_stop="12761"/>
          <exon e_start="12688" e_stop="12592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTGCCAA</genome_strand>
        <mrna_strand>TTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGATAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGAGTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCGAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGACCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCAAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363008" ref_strand="+" ref_description="SGN-E363008 [cLPP-2-D5]">
      <seq>ttttcactcactgtttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagataatcttccggaatccgattttgatatcggactccgccatggaagatgagtagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctccgagctctagggttttcggccggggtgagcttgttatggacccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagcaaaaagaaatggttcgggtcattccaaaagtacacttgcacttatcgttctcatacaatatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="13621" stop="12296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13321" g_stop="12761" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12760" i_stop="12689" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12688" g_stop="12596" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="654" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E363008" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13321" e_stop="12761"/>
          <exon e_start="12688" e_stop="12596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTG</genome_strand>
        <mrna_strand>TTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGATAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGAGTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCGAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGACCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCAAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330304" ref_strand="+" ref_description="SGN-E330304 [cTOD-4-N9]">
      <seq>ttgtgttttccagaagagagacaatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctcctagctctagggttttcggccggggtgagcttgttatggatccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagccaaaagaaatggttcgggtcattccaaaagtacacttgcacttatcgttctcatacaatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="13573" stop="12297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13273" g_stop="12761" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12760" i_stop="12689" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12688" g_stop="12597" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="605" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E330304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13273" e_stop="12761"/>
          <exon e_start="12688" e_stop="12597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGT</genome_strand>
        <mrna_strand>TTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334656" ref_strand="+" ref_description="SGN-E334656 [cTOD-23-F7]">
      <seq>tttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagacaatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctcctagctctagggttttcggccggggtgagcttgttatggatccccgtgaaattgctatacgatatctcaaaactgatttcatcgttgattttacagctgctcttcccctgcctcaaattgttattcgctatgtaatcccagcagccaaaagaaatgtntcgggtcattccaaaagtacacttgcacttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="13608" stop="12314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13308" g_stop="12761" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12760" i_stop="12689" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12688" g_stop="12614" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="623" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E334656" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13308" e_stop="12761"/>
          <exon e_start="12688" e_stop="12614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAAGTCAGTACATATCCATTTAGTTTAATACTCTACTTTTATTATTGTTATTTTTAATTAATAGTGCCATTGCAGATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATC</genome_strand>
        <mrna_strand>TTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA........................................................................ATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGTNTCGGGTCATTCCAAAAGTACACTTGCACTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363811" ref_strand="+" ref_description="SGN-E363811 [cLPP-3-B20]">
      <seq>ttattggaatctgttgtgttttccagaagagagataatcttccggaatccgattttgatatcggactccgccatggaagatgagtagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttccttcacattgccatgaagttccgcacagcttttgttgctccgagctctagggttttcggccggggtgagcttgttatggacccccgtgaaattgctatacgatatctcaaaactgatttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="13586" stop="12493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13286" g_stop="12793" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E363811" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13286" e_stop="12793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCG</genome_strand>
        <mrna_strand>TTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGATAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGAGTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCGAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGACCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330736" ref_strand="+" ref_description="SGN-E330736 [cTOD-8-F11]">
      <seq>aaaaaattattggaatctgttgtgttttccagaagagagacgatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctgacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttgctccttacctgtctcatgtctcttttcatcgatccactctacttctacgtacctttcgtcagcgatcgagcttgtatgtccactgatgacgaagccgcccgtgaaattaccatctatcgttctctcaccgacatcttttacttgcttcacattgccatgaagttccgcacagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="13592" stop="12584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13292" g_stop="12884" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E330736" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13292" e_stop="12884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTT</genome_strand>
        <mrna_strand>AAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACGATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTGACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTGCTCCTTACCTGTCTCATGTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATCGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTGCTTCACATTGCCATGAAGTTCCGCACAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294277" ref_strand="+" ref_description="SGN-E294277 [cLET-14-B22]">
      <seq>tttgatgaaaaaaggagcttcaatggaacactcttaattcattcttccttcttttctagcgctaattttcactcactgtttcattcataatacaaaaaaattattggaatctgttgtgttttccagaagagagacaatcttccggaatccgattttgatatcggactccgccatggaagatgactagaatatttgcaaagccggcgtctcacctccgtcatttacagcaatctttgaagaacaaatcattttcgaacgatgtgccatggtggcgccaaattctcgatccaaacagcgatatcgtcaatcgctggaactatgtcttcctccttacctgtctcatctctcttttcatcgatccactctacttctacgtacctttcgtcagcgatagagcttgtatgtccactgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="13686" stop="12672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13386" g_stop="12972" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E294277" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13386" e_stop="12972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGAAAAAAGGAGCTTCAATGGAACACTCTTAATTCATTCTTCCTTCTTTTCTAGCGCTAATTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGA</genome_strand>
        <mrna_strand>TTTGATGAAAAAAGGAGCTTCAATGGAACACTCTTAATTCATTCTTCCTTCTTTTCTAGCGCTAATTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294278" ref_strand="+" ref_description="SGN-E294278 [cLET-14-B22](-)">
      <seq>tcatcagtggacatacaagctctatcgctgacgaaaggtacgtagaagtagagtggatcgatgaaaagagagatgagacaggtaaggaggaagacatagttccagcgattgacgatatcgctgtttggatcgagaatttggcgccaccatggcacatcgttcgaaaatgatttgttcttcaaagattgctgtaaatgacggaggtgagacgccggctttgcaaatattctagtcatcttccatggcggagtccgatatcaaaatcggattccggaagattgtctctcttctggaaaacacaacagattccaataatttttttgtattatgaatgaaacagtgagtgaaaattagcgctagaaaagaaggaagaatgaattaagagtgttccattgaagctccttttttcatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="12672" stop="13686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12972" g_stop="13386" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E294278" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12972" e_stop="13386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAGTGGACATACAAGCTCTATCGCTGACGAAAGGTACGTAGAAGTAGAGTGGATCGATGAAAAGAGAGATGAGACAGGTAAGGAGGAAGACATAGTTCCAGCGATTGACGATATCGCTGTTTGGATCGAGAATTTGGCGCCACCATGGCACATCGTTCGAAAATGATTTGTTCTTCAAAGATTGCTGTAAATGACGGAGGTGAGACGCCGGCTTTGCAAATATTCTAGTCATCTTCCATGGCGGAGTCCGATATCAAAATCGGATTCCGGAAGATTGTCTCTCTTCTGGAAAACACAACAGATTCCAATAATTTTTTTGTATTATGAATGAAACAGTGAGTGAAAATTAGCGCTAGAAAAGAAGGAAGAATGAATTAAGAGTGTTCCATTGAAGCTCCTTTTTTCATCAAA</genome_strand>
        <mrna_strand>TCATCAGTGGACATACAAGCTCTATCGCTGACGAAAGGTACGTAGAAGTAGAGTGGATCGATGAAAAGAGAGATGAGACAGGTAAGGAGGAAGACATAGTTCCAGCGATTGACGATATCGCTGTTTGGATCGAGAATTTGGCGCCACCATGGCACATCGTTCGAAAATGATTTGTTCTTCAAAGATTGCTGTAAATGACGGAGGTGAGACGCCGGCTTTGCAAATATTCTAGTCATCTTCCATGGCGGAGTCCGATATCAAAATCGGATTCCGGAAGATTGTCTCTCTTCTGGAAAACACAACAGATTCCAATAATTTTTTTGTATTATGAATGAAACAGTGAGTGAAAATTAGCGCTAGAAAAGAAGGAAGAATGAATTAAGAGTGTTCCATTGAAGCTCCTTTTTTCATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317514" ref_strand="+" ref_description="SGN-E317514 [cTOB-17-M13]">
      <seq>agagatcagctactgacaaagacaaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatgcatccttgagtttgatggggcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15228" stop="27696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15528" g_stop="15619" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15620" i_stop="15855" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15856" g_stop="16006" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="243" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="402" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="462" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18653" g_stop="18751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="561" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18752" i_stop="19601" i_length="850">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19602" g_stop="19633" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="593" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E317514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15528" e_stop="15619"/>
          <exon e_start="15856" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18751"/>
          <exon e_start="19602" e_stop="19633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATCAGCTACTGACAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTC</genome_strand>
        <mrna_strand>AGAGATCAGCTACTGACAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATCCTTGAGTTTGATGGGGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703674" ref_strand="+" ref_description="SGN-E703674 [FA22AF04]">
      <seq>caaagacaaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaatacagaggcgtaatcttaggactaagatatgctcttgagaaaggtttcaaacacattanagtcaagggcgattcgaaacttgtctgcatgcagactcaaggaatctggaaatgcaagaatcagaacatggctgagctatccaagatttgttaagagcttaaagatcagtttatgtctttccagatcaaccacatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15244" stop="21702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15544" g_stop="15619" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15620" i_stop="15855" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15856" g_stop="16006" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="227" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="386" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="446" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18653" g_stop="18751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="545" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18752" i_stop="19586" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19587" g_stop="19694" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="653" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19695" i_stop="19774" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19775" g_stop="19918" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="797" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="19919" i_stop="21297" i_length="1379">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.518" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21298" g_stop="21402" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="902" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E703674" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15544" e_stop="15619"/>
          <exon e_start="15856" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18751"/>
          <exon e_start="19587" e_stop="19694"/>
          <exon e_start="19775" e_stop="19918"/>
          <exon e_start="21298" e_stop="21402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAACCACCATACACACACAAAGATAAATGAATGTGTGTGTATAATTCATTTAATCATAATTCATAGTCATAGCAAAATCAACCGAATGTAACATCAACAATACTTTCAGTTCTATAAAGGTCTCTCCGGCTGCTTTTTAATGCACAATGTTATCATTTTTTTTCTTGTTTTTTCAAGCACTAACCATGTCTTCACCTCAACTTTTTCCTCACGAATTGTAATTCTGCATATCATCTTTTTCCTTTTGATGAGTCAGTTGATTAGGCCAGCTACATAAAAACATGAAATACTATGATAAAAAAGAGAGAGAGATGATCAAAGAAGGCTTTTAAACAGAAATGACAAAACCTAAGCAATATCCACCAAGTTTTGAATTGTGCATCACTGGCCCTCGAGGATTTCTCGGTTATAATTAGAAAATGGCAAAGCTAAGAGCTGTTGTGGCATAAAAGAATGCAGCAGCTGGCTAGCAGTTTGGCAACCCGCATTGTGTTGTGAAAACTTGCTTCTCAATATCCCAATTTGAATCCCGGAGAACATATGGTGTAGGTTAATGATTAATTCAAGAAACTTATTTTACTTGGCTTTTATTTTGGCTTTATTACCAAATGCCTAAGATTTTACAGTGACAGGTTTAGGAGCGACTATAAAGACCCTATAGGATTTGAGACATATTCAGCCTATATGTAATTTGATAGGAATTATGGGATGGCATAGCTTGCCTTCTTGATGGTACCTCATCCTATCCATCCCAAGAGACACCTAAACCAGTTTAAAAGTGAAGCTATTCTTCCCTTGCAACCTATGTGATCTTACGCTGAGATCATATGTGCTTTTGCCGTGCTATTTATATTTTTTTCAGTTTTATGTTTTAGCTGGAACTGCTTCTGGGCCGGTCTCTTGTTTTTACAAATTTCTTCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGAC</genome_strand>
        <mrna_strand>CAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTANAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTTGTTAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342682" ref_strand="+" ref_description="SGN-E342682 [cTOF-7-F10]">
      <seq>aaagacaaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15245" stop="19053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15545" g_stop="15619" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15620" i_stop="15855" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15856" g_stop="16006" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="226" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="385" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="445" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18653" g_stop="18751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="544" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E342682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15545" e_stop="15619"/>
          <exon e_start="15856" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT</genome_strand>
        <mrna_strand>AAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344899" ref_strand="+" ref_description="SGN-E344899 [cTOF-21-P1]">
      <seq>caaaactccattaaaactccctattcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacaagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatgtgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttccagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcacgaaaagaggatgcagatggagttggtggcatctgcttcattcgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcaacatatccttctccctacatgcagagatcatgcatccttgagttggatggggcttcaaggggaatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15250" stop="19947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15550" g_stop="15619" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15620" i_stop="15855" i_length="236">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15856" g_stop="16006" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="222" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="381" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="441" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18653" g_stop="18751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="540" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18752" i_stop="19586" i_length="835">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19587" g_stop="19647" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="600" r_length="60" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E344899" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15550" e_stop="15619"/>
          <exon e_start="15856" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18751"/>
          <exon e_start="19587" e_stop="19647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTCCATTAAAACTCCCT-TTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTG</genome_strand>
        <mrna_strand>CAAAACTCCATTAAAACTCCCTATTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACAAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATGTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCCAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCACGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTGCTTCATTCGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCAACATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGAGATCATGCATCCTTGAGTTGGATGGGGCTTC-AAGGGGAATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710848" ref_strand="+" ref_description="SGN-E710848 [FA57AA06]">
      <seq>cgcacttattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15259" stop="20126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15551" g_stop="15619" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15620" i_stop="15855" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15856" g_stop="16006" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="219" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="378" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="438" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18653" g_stop="18751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="537" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18752" i_stop="19586" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19587" g_stop="19694" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="645" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19695" i_stop="19774" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19775" g_stop="19826" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="697" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E710848" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15551" e_stop="15619"/>
          <exon e_start="15856" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18751"/>
          <exon e_start="19587" e_stop="19694"/>
          <exon e_start="19775" e_stop="19826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAAT</genome_strand>
        <mrna_strand>CGCACT-TATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318015" ref_strand="+" ref_description="SGN-E318015 [cTOA-30-D24]">
      <seq>aaaactccattaaaactccctttcttcaccttccaaccaactacacccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcangaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctanctggtgctggggctgtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15251" stop="27736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15551" g_stop="15619" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15620" i_stop="15855" i_length="236">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15856" g_stop="16006" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="220" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="379" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="439" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18653" g_stop="18751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="538" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18752" i_stop="19601" i_length="850">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19602" g_stop="19673" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="610" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E318015" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15551" e_stop="15619"/>
          <exon e_start="15856" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18751"/>
          <exon e_start="19602" e_stop="19673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTG</genome_strand>
        <mrna_strand>AAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCANGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTANCTGGTGCTGGGGCTGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338844" ref_strand="+" ref_description="SGN-E338844 [cTOE-21-G21]">
      <seq>aactccattaaaactctttttcttcaccttccaaccaactacttccttcactctcctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15253" stop="16703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15553" g_stop="15619" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15620" i_stop="15855" i_length="236">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15856" g_stop="16006" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="218" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16300" g_stop="16403" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="322" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E338844" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15553" e_stop="15619"/>
          <exon e_start="15856" e_stop="16006"/>
          <exon e_start="16300" e_stop="16403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGA</genome_strand>
        <mrna_strand>AACTCCATTAAAACTCTTTTTCTTCACCTTCCAACCAACTACTTCCTTCACTCTCCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338334" ref_strand="+" ref_description="SGN-E338334 [cTOE-13-P23]">
      <seq>cctcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgccatgtattctatggatttcagtgatgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15549" stop="16718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15607" g_stop="15619" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15620" i_stop="15855" i_length="236">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15856" g_stop="16006" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="164" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16300" g_stop="16418" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="283" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E338334" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15607" e_stop="15619"/>
          <exon e_start="15856" e_stop="16006"/>
          <exon e_start="16300" e_stop="16418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCG</genome_strand>
        <mrna_strand>CCTCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCCATGTATTCTATGGATTTCAGTGATGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376663" ref_strand="+" ref_description="SGN-E376663 [TUS-18-M2]">
      <seq>tcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaatacagaggcgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15549" stop="20138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15609" g_stop="15619" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15620" i_stop="15855" i_length="236">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15856" g_stop="16006" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="162" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="321" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="381" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18653" g_stop="18751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="480" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18752" i_stop="19586" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19587" g_stop="19694" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="588" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19695" i_stop="19774" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="19775" g_stop="19838" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="652" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E376663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15609" e_stop="15619"/>
          <exon e_start="15856" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18751"/>
          <exon e_start="19587" e_stop="19694"/>
          <exon e_start="19775" e_stop="19838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAA</genome_strand>
        <mrna_strand>TCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231746" ref_strand="+" ref_description="SGN-E231746 [cLED-4-F8]">
      <seq>tcttccgctcgtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15549" stop="19993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15609" g_stop="15619" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15620" i_stop="15855" i_length="236">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15856" g_stop="16006" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="162" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="321" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="381" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18653" g_stop="18751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="480" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18752" i_stop="19586" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19587" g_stop="19689" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="583" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E231746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15609" e_stop="15619"/>
          <exon e_start="15856" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18751"/>
          <exon e_start="19587" e_stop="19689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCGCTCGGTAAGAAGTTTCCTTCTTTTCACTTTTCTCTGTTTTCGAATAAATCCTAATTCCATATATCTGTCGGAATTCGGGTCTATTTGAAAAAAAGTGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAA</genome_strand>
        <mrna_strand>TCTTCCGCTCG............................................................................................................................................................................................................................................TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745499" ref_strand="+" ref_description="SGN-E745499 [GI|47105289]">
      <seq>ggtgaagaaaatgccctaaatcatatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcgttgaggaaattgggcacttgtagttgttgtttcgtttcgtcttttgctaaaacttatgattgtgttgatacagtgctggagttacttgtaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatgggctcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaatacagaggcgtaatcttaggactaagatatgctcttgagaaaggtttcaaacacattaaagtcaagggcgattcgaaacttgtctgcatgcagactcaaggaatctggaaatgcaagaatcagaacatggctgagctatccaagattgttaaagagcttaaagatcagtttatgtctttccagatcaaccacatggacagagaatccaacactgaagccgatgcccaggcaaatttagccgtgtatctcaagaatggcgaaattcaagtggaatgtgacatgataacttaattaagtcaccaactactacctcaacttgttgggatttaggaaatgatgaatgaccgccaagacagaccaatttggatattcagttgtctgaaactacacttgtaacatgtagatatatgatctgaattatgtgcatgtaacctaattatgtatctggattgaaagtagcttctgctgtaacctaatttgcaatgaaaattggttgggacaagcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15412" stop="22497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15711" g_stop="16006" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="455" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="515" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18653" g_stop="18751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="614" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18752" i_stop="19586" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19587" g_stop="19694" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="722" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19695" i_stop="19774" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19775" g_stop="19918" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="866" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19919" i_stop="21297" i_length="1379">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.518" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21298" g_stop="21405" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="867" r_stop="974" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21406" i_stop="21822" i_length="417">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21823" g_stop="21874" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="975" r_stop="1026" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21875" i_stop="21943" i_length="69">
            <donor d_prob="0.273" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="21944" g_stop="22192" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1027" r_stop="1275" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1278" polyA_stop="1297"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E745499" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1275</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15711" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18751"/>
          <exon e_start="19587" e_stop="19694"/>
          <exon e_start="19775" e_stop="19918"/>
          <exon e_start="21298" e_stop="21405"/>
          <exon e_start="21823" e_stop="21874"/>
          <exon e_start="21944" e_stop="22192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAACCACCATACACACACAAAGATAAATGAATGTGTGTGTATAATTCATTTAATCATAATTCATAGTCATAGCAAAATCAACCGAATGTAACATCAACAATACTTTCAGTTCTATAAAGGTCTCTCCGGCTGCTTTTTAATGCACAATGTTATCATTTTTTTTCTTGTTTTTTCAAGCACTAACCATGTCTTCACCTCAACTTTTTCCTCACGAATTGTAATTCTGCATATCATCTTTTTCCTTTTGATGAGTCAGTTGATTAGGCCAGCTACATAAAAACATGAAATACTATGATAAAAAAGAGAGAGAGATGATCAAAGAAGGCTTTTAAACAGAAATGACAAAACCTAAGCAATATCCACCAAGTTTTGAATTGTGCATCACTGGCCCTCGAGGATTTCTCGGTTATAATTAGAAAATGGCAAAGCTAAGAGCTGTTGTGGCATAAAAGAATGCAGCAGCTGGCTAGCAGTTTGGCAACCCGCATTGTGTTGTGAAAACTTGCTTCTCAATATCCCAATTTGAATCCCGGAGAACATATGGTGTAGGTTAATGATTAATTCAAGAAACTTATTTTACTTGGCTTTTATTTTGGCTTTATTACCAAATGCCTAAGATTTTACAGTGACAGGTTTAGGAGCGACTATAAAGACCCTATAGGATTTGAGACATATTCAGCCTATATGTAATTTGATAGGAATTATGGGATGGCATAGCTTGCCTTCTTGATGGTACCTCATCCTATCCATCCCAAGAGACACCTAAACCAGTTTAAAAGTGAAGCTATTCTTCCCTTGCAACCTATGTGATCTTACGCTGAGATCATATGTGCTTTTGCCGTGCTATTTATATTTTTTTCAGTTTTATGTTTTAGCTGGAACTGCTTCTGGGCCGGTCTCTTGTTTTTACAAATTTCTTCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGAGTATGGCCAATTTTTCCTCTTTTGCTAATTTGAAGCTCACTGAGCTGGTCTATCAGAATTTTGATTTTCGAAGTCCTTATTATATCTTGCAACTGCATGTTGTTTTTGTGATAAATATGGAGTAGTGTGGTCTCCTGTGACCAAAAGAGGTGCAAGCGGTGGTACCTGGACGTCATGTTTAATTTATGCAATATATATAGTTTCTCTTTTCTTGCTAAGCTGTTCTTCGAAATTGATTTTATCACCTTGTTGCTAGAAGTGAATAATCATGCTTCCCTAGTCAATCAATTCACTCTGTTCTGGTTGCTCTGCATGAACAGTTCAGAATTTTTCTGCACATAATTGTTCCGTTCTTTTTAATCATTTAAAGCCTTTTTTCATCCAATTCCAAGGGTTTTTACTTGTTTAACATATCAGGAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGAGTAAGGGTCTTTTGTCTTGTGAGTTTCTCTTTTTCCGTGAGAAATCTAATAAGAAATATTTTGTTGCAGATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAA</genome_strand>
        <mrna_strand>GGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGTAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGGCTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA.....................................................................ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346458" ref_strand="+" ref_description="SGN-E346458 [cTOF-23-L1]">
      <seq>gaaaatgccctaaatatatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcgttgaggaaattgggcacttgtagttgttgtttcgtttcgtcttttgctaaaacttatgattgtgttgatacagtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctgggtgctgggctgtgctgcgtgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15417" stop="27744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15717" g_stop="16006" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="448" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="508" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18653" g_stop="18751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="607" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18752" i_stop="19601" i_length="850">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.677" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19602" g_stop="19681" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="687" r_length="80" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E346458" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15717" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18751"/>
          <exon e_start="19602" e_stop="19681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCT-GGTGCTGGGGCTGTGCTGCGTGCTGC</genome_strand>
        <mrna_strand>GAAAATGCCCTAAAT-ATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGGTGCT-GGGCTGTGCTGCGTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347187" ref_strand="+" ref_description="SGN-E347187 [cTOF-25-K2]">
      <seq>gaaaatgccctaaatcatatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcgttgaggaaattgggcacttgtagttgttgtttcgtttcgtcttttgctaaaacttatgattgtgttgatacagtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcanatggagttggtggcatctccttcatttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15417" stop="18982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15717" g_stop="16006" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="449" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="509" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18653" g_stop="18682" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="539" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E347187" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15717" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCA</genome_strand>
        <mrna_strand>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAN.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341598" ref_strand="+" ref_description="SGN-E341598 [cTOE-23-E21]">
      <seq>ctaaatcatatagtaataatacgtagaccgtacattgttctctgagtcttcaaatcgttgaggaaattgggcacttgtagttgttgtttcgtttcgtcttttgctaaaacttatgattgtgttgatacagtgctggagttacttgcaaagtcaagtcgaaacgttggagttggaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15426" stop="19928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15726" g_stop="16006" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="440" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="500" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18653" g_stop="18751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="599" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18752" i_stop="19586" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19587" g_stop="19628" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="641" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E341598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15726" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18751"/>
          <exon e_start="19587" e_stop="19628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGG</genome_strand>
        <mrna_strand>CTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338561" ref_strand="+" ref_description="SGN-E338561 [cTOE-15-K19]">
      <seq>gaaacataaaatgggggacgagaaggatgcgttctatgtcgtgcgcaaaggggatgtgatcggggtttataagaacttgagcgatttgcaagctttgctacgaacatctattggtgaaccagccataagcgtttttaaagggtatcgcttgactaaggaatctgaagagtatctggcctctcatggactcaagaatgcaatgtattctatggatttcagtgatgttcgagacgatctctttgggactctcatcccatgcccatttcggcaacccggctcttcaaaagataaaattgtggggaagaatgttcaggaaaagaggatgcagatggagttggtggcatctccttcatttgcagctgctggtcagcaaaaacttgctaaattggacaatttcctagaagctcccccaatttcgtcatatccttctccctacatgcagtgttcatgcatccttgagtttgatggggcttcaaaggggaatcctggtctagctggtgctggggctgtgctgcgtgctgcagatggaagtatggttttccggctgcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="15598" stop="20090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15898" g_stop="16006" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16300" g_stop="16458" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="268" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18244" g_stop="18303" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="328" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349">
            <donor d_prob="0.835" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18653" g_stop="18751" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="427" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18752" i_stop="19586" i_length="835">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19587" g_stop="19694" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="535" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19695" i_stop="19774" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19775" g_stop="19790" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="551" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E338561" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15898" e_stop="16006"/>
          <exon e_start="16300" e_stop="16458"/>
          <exon e_start="18244" e_stop="18303"/>
          <exon e_start="18653" e_stop="18751"/>
          <exon e_start="19587" e_stop="19694"/>
          <exon e_start="19775" e_stop="19790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCTGTATGTTTCTTTTACCTTTTAAGGTTTAAATACTTTTCTGCTTTTGGGCCAAAGACAGTTTCCTTTATAGTCATTGTATCTATTGTACTGCTACTTTTTTTTTTTTTGGTCTTTTATAGCTCTAGTATAGGAAGAGTTCAATTATTCCAGCTTTTGAACAATGATGAAGAAATAGTTGGATACATTATAGCCAATCCCATTAGTGTAGTGTTGATTGATTAATTAGACCAAAAGTAATAATACTATCAGATGTTTCTTTTTTTAAATGTATTATTTTAATTCTAATCTTTCAGATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGGGTTAGAAAGTTAATCATTCTGCTGTTTTTGAATTGGCATTAGATGCAGTTGTCTTATCTATTTGGTAGTAATGTCAATTTGATGATAGTTGGGTCAAATTTTGGCTATTTTCCGGCTTTGAAAGATATATATAAATCCTTCATGATTTGGACTATAGTACTGCGCCACTAGCTTGACTGACTGCGTGAATTTCTCGGTCAGGCTGATCTCCCCCCCTCCCCTCCCTTTTTTTTTTAGAATGTTAGGCCAGTGTTTTAGACGGCGATAGGCGATAAAAGGCGACAAGGGTCTGCCTCGCCACAAGGCGAGGCGAACGGCGAGGCGCTCGCCTTTTTGAAGTGCGGCACCTTTTAATACCAAAATATTTAAAATTTTAATTGCATATGTAAATAATCAAACAATAACATATTAGCAATTTTTTCAAATTAAAAACTAAAAATAGATAGTACGTACTAAAAGCCTAGAACATGAAAGAGAAAAAAAAGAACAAAAGTCAAAACAAAGGTAAAAGTGACCAACTCTGAAGAAGAAAACAAGAAATATGTATTGGTTAGACTTTGGAGTCGCCGGAAAAGCCTGGCAAGTTACCGGAGGAGTCTAGTCGAAAATCCTAAAATTACCTTTTAATTTTTAAAAAATCCTAAATTTGTCGCCTTTTTTTTTAAAAAAAAACACAAAAGGCGACACCTTCCTAGCCTTTCTCGCCTCTAGCCTTTTGTCGACATGACGTCGCCTTTTGAAGATTGCCTCGCCACAAAGCTAAAAGGCAATGAAGGGTCGCCTCGCCTCGCCTCGCCTCTTGCCATTGGCGACGAGGCAATCGCCTTTCACAATACTAATGTTAGCTTTTCTACTATATATCCACAGGTACTAGAAAATTGAAATAATAATAATATTTACTGGCGACGATTTTTTTCGGTGATTTTTGAACGGATGACACATTAAATAGATGTGATTGGATAAACTTTTACCAAAAGAGAACTTTGAGTTAAGATGCATGAGAGGGGAAGTGAAAGTTGAGCTAGATTTATATGTATATATGTACATGAAAAGTAAAATTGACTGGTGGAGAACTGGGAGGAAATCGTTTCTTTGCTGCACTGGATAAGAGAGCAAAGCGATTGAATACTGTTGAAAAGCTAGCAATTAAAAACAACTAAATACTATTGAAAAGCTTAATGTGAATAAGCTGAAGAATAATTTTTTGAAGTATTATCTGGTTATGTGATACGTAGTAGCATTTCAAAGAGAAAATGTGATACTTGCCTATTCTCGTGGCACACACCTTCCTGGTGATAATGCTACTGCCATAAGTTATACTGCTTCAAGACTAATTTTCATATTTGGGGGAGGGGGTCTGGATCTGTCTCAAATGCAGAACTGTACTACTATTTCCTCATGGTCACGAAAGCTTGCTAATAGCTGTTCAAATGTGATTATTGGGATCCAAATTTGATATTGATGATAGGTTTTGTCTCTTTGGATTTGTTAGCTTTTTCTTGCTTTGTCATTGCCATCATGTCGAACTACTTCCTCCAGTGTGTCTTGCAACCACTAACTGGTAACTAGAAAGTGAGCATAATACTGCTTTTACAATTTTCAGCTAGACCCAACTTGAAATGCTAAGATTTTTTTGGTATCCATTATTGAAATGTCTGTCTCCTGTTGCTCTATTGAATACATTTTGTTCCATGAAAAGAAACAACAGTAGCATGTTTATTTAGTTATAATTTACATCAAACACCATTCCATGCTGATGGATTTTAATGTTTCATGTTTTTGCAGCAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAGGTTATCTCTTAATGGCCAATCCATATATTCTTGCATTTATTAGACGGGGCATGTCTTTCTTGAAAATCATAACTGATATACTTCATTTAGGCCCCAGCTTAAGCCATCAAACTATATCATCAATTATTGCGAAGCATTAATATATTCTGAAGTAGGATAGGATGGAAATTTTGTACACGTTGTCAATTATTAGGCTTTTGCTTTTCCTGGAATAGGAAACTAATTGTCTGGCCTAGTGATGGTGGTTTCCTTAATAACTCTTTTAGTGTAATGAGAACTAACATCTAGTAGTAGAATAAATGTCGTGGATAAGTCTTTGATATTCACTTTGTTTTATTCCTTCGTTCAGATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCTGTAAGTTAAATTTTTGTTGTATCAAGATATGCAATTTTTTTCATTGTCTGCTTTACCTATATGTTGATATTCTGAGGGATAGGATCGTGTTAGCCTGTCACAACAGAAACCACTCAGTGTCCTTCATCGGGCAAACAAACAAAAAATAATTCTTCAATCACTTTGGCAATAAGAGGTAATAAGAATGTAGAACAGTGAATATAGCATAAATATAACAATATCTGATCAGCCTCAGGAACTCATGTCACAACTCACAAGTCATGATCACTAAGAATATGAGATACAATTCTGTATGAGACTAATGCATAATCAATCTGAAGTACAAATCAGAACAAAAAGACCCTAAGTTACCATGAACAAGCTGATAGCTCAACAGCTCACACTGGGATGTTGATAGATCTTGAGTGCTCACTCACGTACTCTGCTGAAGCTTGAATCTATATCTGCACACTCGGTGCAGAAGTGTAGGGGAGTAAGAGTACTCAGTAAGTATCTTTGACCTCTCCAAATAAGATAGTGGCAAGAGACAATATAGAAGGTTCTCACTTTTAAACCTGTGCAATTACTATCTACAATAATTACAGAAATAGTAATGTGCTTTGAACTTATATTTTGAGCCACTGTATTTATTTTGTGGTACTTCAGTTCCAAGTCAAAATATCATGTCTCTGCGACATATGTAAGATATTGTAGCTGAGTTGGTCTTATTTCGCCAAATAGGGTGGTGTGACTCGCTTGTAATATGATGAACACACTGTTTTCTTTAAGTACTAGTATCTTTATGTGATCTTTGCTTGAAGCTTGGAAGAACAATTTTGTAAATAGATGCCTTCAGTCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTATCCTTTTAGAAGATGTGGTTTGTCACCACAAATTTACAGGTTTTCGACTTTGTGATTCTTTTCTGTAGGTTTTCCGGCTGCGTG</genome_strand>
        <mrna_strand>GAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT.....................................................................................................................................................................................................................................................................................................ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG.............................................................................................................................................................................................................................................................................................................................................................ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG................................................................................GTTTTCCGGCTGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295169" ref_strand="+" ref_description="SGN-E295169 [cLET-20-H23]">
      <seq>ttttccggctgcgtgaaggtgtaggtgtggcaactaacaatgttgctgaatacagaggcgtaatcttaggactaagatatgctcttgagaaaggtttcaaacacattaaagtcaagggcgattcgaaacttgtctgcatgcagactcaaggaatctggaaatgcaagaatcagaacatggctgagctatccaagattgttaaagagcttaaagatcagtttatgtctttccagatcaaccacatggacagagaatccaacactgaagccgatgcccaggcaaatttagccgtgtatctcaagaatggcgaaattcaagtggaatgtgacatgataacttaattaagtcaccaactactacctcaacttgttgggatttaggaaatgatgaatgaccgccaagacagaccaatttggatattcagttgtctgaaactacacttgtaacatgtagatatatgatctgaattatgtgcatgtaacctaattatgtatctggattgaaagtagcttctgctgtaacctaatttgcaatgaaaattggttgggacaagtacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="19476" stop="22499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19776" g_stop="19918" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19919" i_stop="21297" i_length="1379">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.518" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21298" g_stop="21405" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="251" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21406" i_stop="21822" i_length="417">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21823" g_stop="21874" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="303" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21875" i_stop="21943" i_length="69">
            <donor d_prob="0.273" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21944" g_stop="22199" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="559" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E295169" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19776" e_stop="19918"/>
          <exon e_start="21298" e_stop="21405"/>
          <exon e_start="21823" e_stop="21874"/>
          <exon e_start="21944" e_stop="22199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAGGTCTTCTTTCTCTACTTCTTACAGCTGTTTTTTTTAGTTTTATTCATTTTTAATTTGCTTTTAGTAAATTAGTCAATTTTTCTGCTTTCTCACTTTAAATATCCTGTCAAATTTGTATATCTTCAGTAATTTATTGAAATCACTGATTTCTAAAACAATTGCTGAAGAGTCTTTTCAATTGAGTGTCAGAGACATATTCATTGAACTGGGCTACACCAACAGAAAGTGGACCGTTCAATATAAGGAGACACATGGTTTTTAACCAACTAGTTTTTGGACATGTACATCCCAAATTAACTAGAATATGATTTTGCATAATCACATAAAATTATTGAAAAATATTTTTGAGTAACAAAACACACATTAATTAAGATTCATGAATGTGATTCTTCATTTGGGACTTCATGGTTGAGCCCCCCTCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAACCACCATACACACACAAAGATAAATGAATGTGTGTGTATAATTCATTTAATCATAATTCATAGTCATAGCAAAATCAACCGAATGTAACATCAACAATACTTTCAGTTCTATAAAGGTCTCTCCGGCTGCTTTTTAATGCACAATGTTATCATTTTTTTTCTTGTTTTTTCAAGCACTAACCATGTCTTCACCTCAACTTTTTCCTCACGAATTGTAATTCTGCATATCATCTTTTTCCTTTTGATGAGTCAGTTGATTAGGCCAGCTACATAAAAACATGAAATACTATGATAAAAAAGAGAGAGAGATGATCAAAGAAGGCTTTTAAACAGAAATGACAAAACCTAAGCAATATCCACCAAGTTTTGAATTGTGCATCACTGGCCCTCGAGGATTTCTCGGTTATAATTAGAAAATGGCAAAGCTAAGAGCTGTTGTGGCATAAAAGAATGCAGCAGCTGGCTAGCAGTTTGGCAACCCGCATTGTGTTGTGAAAACTTGCTTCTCAATATCCCAATTTGAATCCCGGAGAACATATGGTGTAGGTTAATGATTAATTCAAGAAACTTATTTTACTTGGCTTTTATTTTGGCTTTATTACCAAATGCCTAAGATTTTACAGTGACAGGTTTAGGAGCGACTATAAAGACCCTATAGGATTTGAGACATATTCAGCCTATATGTAATTTGATAGGAATTATGGGATGGCATAGCTTGCCTTCTTGATGGTACCTCATCCTATCCATCCCAAGAGACACCTAAACCAGTTTAAAAGTGAAGCTATTCTTCCCTTGCAACCTATGTGATCTTACGCTGAGATCATATGTGCTTTTGCCGTGCTATTTATATTTTTTTCAGTTTTATGTTTTAGCTGGAACTGCTTCTGGGCCGGTCTCTTGTTTTTACAAATTTCTTCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGAGTATGGCCAATTTTTCCTCTTTTGCTAATTTGAAGCTCACTGAGCTGGTCTATCAGAATTTTGATTTTCGAAGTCCTTATTATATCTTGCAACTGCATGTTGTTTTTGTGATAAATATGGAGTAGTGTGGTCTCCTGTGACCAAAAGAGGTGCAAGCGGTGGTACCTGGACGTCATGTTTAATTTATGCAATATATATAGTTTCTCTTTTCTTGCTAAGCTGTTCTTCGAAATTGATTTTATCACCTTGTTGCTAGAAGTGAATAATCATGCTTCCCTAGTCAATCAATTCACTCTGTTCTGGTTGCTCTGCATGAACAGTTCAGAATTTTTCTGCACATAATTGTTCCGTTCTTTTTAATCATTTAAAGCCTTTTTTCATCCAATTCCAAGGGTTTTTACTTGTTTAACATATCAGGAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGAGTAAGGGTCTTTTGTCTTGTGAGTTTCTCTTTTTCCGTGAGAAATCTAATAAGAAATATTTTGTTGCAGATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACC</genome_strand>
        <mrna_strand>TTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA.....................................................................ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701012" ref_strand="+" ref_description="SGN-E701012 [FA14DB07]">
      <seq>ctcttcccaagtcccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagaatcaccatatttacagagaattcaacactgaagctgatgcccaggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="22312" stop="29725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22612" g_stop="22657" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22658" i_stop="22947" i_length="290">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22948" g_stop="23097" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="196" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23098" i_stop="23318" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23319" g_stop="23477" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="355" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23478" i_stop="25291" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25292" g_stop="25351" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="415" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25352" i_stop="25947" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25948" g_stop="26046" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="514" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26047" i_stop="27364" i_length="1318">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27365" g_stop="27457" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="607" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27458" i_stop="27536" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27537" g_stop="27680" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="751" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27681" i_stop="28858" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28859" g_stop="28966" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="859" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="28967" i_stop="29395" i_length="429">
            <donor d_prob="0.740" d_score="0.94"/>
            <acceptor a_prob="0.917" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29396" g_stop="29425" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="860" r_stop="889" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E701012" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22612" e_stop="22657"/>
          <exon e_start="22948" e_stop="23097"/>
          <exon e_start="23319" e_stop="23477"/>
          <exon e_start="25292" e_stop="25351"/>
          <exon e_start="25948" e_stop="26046"/>
          <exon e_start="27365" e_stop="27457"/>
          <exon e_start="27537" e_stop="27680"/>
          <exon e_start="28859" e_stop="28966"/>
          <exon e_start="29396" e_stop="29425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCA</genome_strand>
        <mrna_strand>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGAATCACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731784" ref_strand="+" ref_description="SGN-E731784 [LA28AG03]">
      <seq>caagtcccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttncaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatctttccaaatcacccatatttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="22319" stop="29265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22619" g_stop="22657" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22658" i_stop="22947" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22948" g_stop="23097" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="189" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23098" i_stop="23318" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23319" g_stop="23477" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="348" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23478" i_stop="25291" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25292" g_stop="25351" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="408" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25352" i_stop="25947" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25948" g_stop="26046" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="507" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26047" i_stop="27349" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27350" g_stop="27457" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="615" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27458" i_stop="27536" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27537" g_stop="27680" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="759" r_length="144" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27681" i_stop="28858" i_length="1178">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28859" g_stop="28965" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="866" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E731784" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22619" e_stop="22657"/>
          <exon e_start="22948" e_stop="23097"/>
          <exon e_start="23319" e_stop="23477"/>
          <exon e_start="25292" e_stop="25351"/>
          <exon e_start="25948" e_stop="26046"/>
          <exon e_start="27350" e_stop="27457"/>
          <exon e_start="27537" e_stop="27680"/>
          <exon e_start="28859" e_stop="28965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAG</genome_strand>
        <mrna_strand>CAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTNCAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCTTTCCAAATCACCCATATTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391743" ref_strand="+" ref_description="SGN-E391743 [TUS-24-E14]">
      <seq>cccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcaaatggaaatatggttttccggttgcgtgaaggtggtgggtgtggcaactaacaacgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="22324" stop="27883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22624" g_stop="22657" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22658" i_stop="22947" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22948" g_stop="23097" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="184" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23098" i_stop="23318" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23319" g_stop="23477" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="343" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23478" i_stop="25291" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25292" g_stop="25351" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="403" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25352" i_stop="25947" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25948" g_stop="26046" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="502" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26047" i_stop="27349" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27350" g_stop="27457" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="610" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27458" i_stop="27536" i_length="79">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27537" g_stop="27583" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="658" r_length="48" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E391743" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22624" e_stop="22657"/>
          <exon e_start="22948" e_stop="23097"/>
          <exon e_start="23319" e_stop="23477"/>
          <exon e_start="25292" e_stop="25351"/>
          <exon e_start="25948" e_stop="26046"/>
          <exon e_start="27350" e_stop="27457"/>
          <exon e_start="27537" e_stop="27583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGT-GTGGGTGTGGCAACTAACAACGTTGC</genome_strand>
        <mrna_strand>CCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAAATGGAAATATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGGTGGGTGTGGCAACTAACAACGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E247663" ref_strand="+" ref_description="SGN-E247663 [cLEF-42-E7]">
      <seq>ccaactactcccttcactctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgtcccccctacatacagtgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="22325" stop="27742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22625" g_stop="22657" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22658" i_stop="22947" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22948" g_stop="23097" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="183" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23098" i_stop="23318" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23319" g_stop="23477" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="342" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23478" i_stop="25291" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25292" g_stop="25351" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="402" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25352" i_stop="25947" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25948" g_stop="26046" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="501" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26047" i_stop="27349" i_length="1303">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.767" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27350" g_stop="27442" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="594" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E247663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22625" e_stop="22657"/>
          <exon e_start="22948" e_stop="23097"/>
          <exon e_start="23319" e_stop="23477"/>
          <exon e_start="25292" e_stop="25351"/>
          <exon e_start="25948" e_stop="26046"/>
          <exon e_start="27350" e_stop="27442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTACTCCCTTCACTCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCT</genome_strand>
        <mrna_strand>CCAACTACTCCCTTCACTCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322581" ref_strand="+" ref_description="SGN-E322581 [cTOB-26-N14]">
      <seq>tctcttcctctgctcgtggtggagtaacttgcaaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggnacacctggtgctggtgccgtgctgcgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="22640" stop="27742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22642" g_stop="22657" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22658" i_stop="22947" i_length="290">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22948" g_stop="23097" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="166" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23098" i_stop="23318" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23319" g_stop="23477" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="325" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23478" i_stop="25291" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25292" g_stop="25351" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="385" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25352" i_stop="25947" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25948" g_stop="26046" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="484" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26047" i_stop="27364" i_length="1318">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27365" g_stop="27442" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="562" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E322581" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22642" e_stop="22657"/>
          <exon e_start="22948" e_stop="23097"/>
          <exon e_start="23319" e_stop="23477"/>
          <exon e_start="25292" e_stop="25351"/>
          <exon e_start="25948" e_stop="26046"/>
          <exon e_start="27365" e_stop="27442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCTCTGCTCGGTAAGAATCTTCATTGTATTCTTTCACTTTTCTATGTTTTCAGAAATCCTAATTCGTTTATCTTTGTGTCTAAAGTACGATTTTTATTCAATACAAAAAAACCCTAATTGAGATGGTAATTGAGTATCATTGCTACTATATTAACTGCAACTGATCATACATGCAGGGTAATATGTATACTGAAAATTGTTCAGTGAGTTTAGAATGTAGTTTTTTTTTTTTCTGGAACTTGGACTTTAAGTATTTGTTTCTGTGTTTTCACTAAGTAATACTGTGTTGTGTTGATACAGTGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCT</genome_strand>
        <mrna_strand>TCTCTTCCTCTGCTCG..................................................................................................................................................................................................................................................................................................TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGNACACCTGGTGCTGGTGCCGTGCTGCGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262841" ref_strand="+" ref_description="SGN-E262841 [cLEG-59-K21]">
      <seq>caaagccaagtaaacgcgttggagttggacacataaatgggggacgaaaaggatgctttttatgtcgtgcataaaggggatgtgatcgctgtctataagaacctcagtgatttacaagctctgctacgatcttctgttggtgaaccagctataagtgtttataaagggtatcacctggctaagcaatcagaagagtatttggcatctcatggactcaaaaatgcaatgtattctatggatttcagtgatgttcgagatgatctctttgggatactcgtcccatgcccttttcggcaacctggctcttcgaaagataaaattatggggaagaatcttccggagaagaggatgcagatggaggtggttgcatctccttcgttttcagccgctggtcagcaaaaacatgccacattagacaattgcctagaaattcccccgatttcgtcatattgttgttcatgcattcttgagtttgatggggcttcaaaggggaatcctggaccagctggtgctggtgccgtgctgcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="22663" stop="29203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22963" g_stop="23097" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23098" i_stop="23318" i_length="221">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23319" g_stop="23477" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="294" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23478" i_stop="25291" i_length="1814">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25292" g_stop="25351" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="354" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25352" i_stop="25947" i_length="596">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25948" g_stop="26046" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="453" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26047" i_stop="27364" i_length="1318">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.556" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27365" g_stop="27457" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="546" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27458" i_stop="27536" i_length="79">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27537" g_stop="27680" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="690" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27681" i_stop="28858" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28859" g_stop="28903" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="735" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E262841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22963" e_stop="23097"/>
          <exon e_start="23319" e_stop="23477"/>
          <exon e_start="25292" e_stop="25351"/>
          <exon e_start="25948" e_stop="26046"/>
          <exon e_start="27365" e_stop="27457"/>
          <exon e_start="27537" e_stop="27680"/>
          <exon e_start="28859" e_stop="28903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCTGTACGTTTCCTTTAATGTTTTTTCTGCTTTTGGGCCTTAGACGGCCTTATCTGTTGGACTACTTTTTTTGGAGTCATGTAGAGCTCAAGTATAAGAAGAGTCTAATTATTACAGCTTTTTAACAATGATGAAGAAATAGAGCTTAGTTGATTTGAGCACAAGTAATAATATTATCAGATGCTCTTTTGATGTATTTTCTATTATTTTCTGTGATCTTTCAGGTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGGGTTAGAAAGTTTATCATTTTATTATTATTGAACTGGTGGTAGATGTAGTTGTTTAATCTATTTGACAATTTTGTCTTAACTGTTTAATAATAGCTGGGTCAAATTTTGGTTAATGTGGATGCTAAAATTTGTCCGGCATTTAAGTTTCATACCCATCCTTCTGTTATCATGATCTAGACCCAGTAGTGTGCTGCAACCTTGACTGACTGCATGATTGTTCGCGATCAGGCTGAACTAATCCTTCTCTTGATCTTCCAACTATGTTATCGGCAATTGAGTAGGATCAATTCTCCAATTAGTGACCTTTTACTGGAAACGGAGTGGTAGTGATTACCAGTCGTATCTACTCCATTTAGTGACTAGCAGTTGTATCTACTCCATTTAGTGAGTTTTTATGTCTTTAGGTGTATGTCTTTTGCGTAGCTTTGATATCTTCTTTTGCGTGGCGCTGGTGCTTCCGTGTAGCTCCTTTTTCTAAAGAAAATGGACAAATATTGAATGCAACTGTTATTTACCGCTTTGACATGATATCCATCTCATTTTTCCTCTTTGAAGCACTTTCATCTGATTGTTGAGATAAGAGATAGCTCTTCAGCGCTCTCTATTGTCTTTTCCTTCCAATTTGTCTCATGACACATCATTTTGGCGCTGCAGAAATGGTTTTGAGCTCATGAGATTAATTTTTCCTATGTAGCATAGGTTCTAAATAATAAAGTGCCCTTGTGTTTTGGAAGAGCAAAATATCGCTCCATCTTAGACCATCATAATAGGACAATCATTACTGGAAGAATTACTCTGGGATGATGTGTCTTTATATCTTTGCTTATACAGTTTTTATTGAATTCATAGCTGAGGCCCATATTTGGTAGAGATTCTGATTTTTTTTTTAACTAAAATATATTTAGGTATATAGAAAATAAAATTAATATTGTTTTGCTAGCATTGATTCTTTAATGGTGATTTTTGAATGGATGACACATAAAATTGATGTCATTGGATAATTTTGTACCACCAGCAGATGCATGAGAAAGGAAGTGAATATTTACTTAGATTTGTATGTATTGAAATATAGAAATTGAAAGATGTAGGACTGGAACTGGGAAGAAATCATTTATTTTTGCATTAGATGAATAAATACTGTTTCAAAGCTAAAAAAAACGATGAATACTATTGAAAAGCTTAATGTGAATAAACTGCTGTTTTTTTTAAAAAAATCTTAAGTGTTTTTCCGATTATGTGGTGCGTGGTAGCATTTCAAAGAGAAAATGTCATACATGCCTACTTTTTGTGGCGCATACTTCTTTTTGATAATGCTACTGCCATATGTTATATTGCTTCAAGGCTAATTTGGTTCATGGGTGGAAAGGGGTCATATATGTCTCTGACGCAGAACTGACTACTGTTACTTGTGGTCACACAAACTTGTCAAGTAGCCTTACATATGATATTCTTGGGATCCAATTTGATATCTTTGATAGGTTAATTCACTTGGTTGATTTGTTAGTTTTTCCTCGCTTTGTCATTGCCATGACACTACTTCCTCTATTGTGTCTTGCGACCACTGACTGGTAATTAAAGAGTGCACATAATACTGCTTGTACATTTTTCAGCTATACCTACTTGAAAAACTTAGATGTTTTAACATTCAATTATTGATATGTTTGTTCCCGTTTGCTCTGTCAAATTCAGCAGTCTATGGTTTATAATTGTGCCTTGAAGAAAACCAAACTTTCAGCATGTTTTCTAGTAACAATTTTACATTAAAGACGATATCATGCATGCTGATTTTTCATTTTTTTTTTCTGTTTTTGTAGCAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAGGTAATTTCTTAATGGTCAATCCAGATTATTCTTACATTGATAGGATGGGGTATGTCTTTCTTGAAAGGTTCATAACAGTTATACTTTCTTTATGCCCAACTTCAGTCATCAAAAAAACTATATCATCAGTTACTACAATGCCCTAACATGTTGTGAAGTAGGATGGCATGGAAATTTCGGATGGTGTTTATTATTAGGCTTGTGCTTTTCCTGGAATAAGAAACTAATTGTCTGGTCTAGGGATGGCGGTTTCCTCTATAGCTCTTGAAGTAAAATGAGGATACTCATCTAGTGGTGGTATAAATGTCAAGGATAAGCCTGTTTGCTGCATGTAGTTGCTCTAATAACGAAGTTGTGCTTCACATTTATAGTTTCTAGTATAAAACTGATTTATTGTCCTAAGAACTCAATTTTGTCGATGGTTCAACTCACAGGTTTTAGTTAATCTTGTCTCGCCTTATGATAATTTGTTCGGTCCTCTATTTTGTTTAATATACTTTTCTAATTTAATTGAGTCAGCATGTGAAAGTCTTCCTATTATGAAAAGGTGTGTGTAGTGTATTTGATATTCACATGATTATTTTTCTTACATTCAGATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGTGTAAGTATATTATTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTTAGAGTCCGAGCAACATAACTTGTATTAAGTTTATTTTAGAATGTAAGGGGTCGTTTGGTACAAAAATTAATGACACACTGATTAGTAATGCAAGGATTACTAATGCAGGGGTAAGTAGGGGTTAGTAGTGCAGGAATATGTAATGCAGGGTTTACTTTTACCAAATGTTTGGCTCATTGTTTCCTACCCCATCTTGTGTTTGGATTAAAACTCTATAAGAAGTTTTTTTCCAATTATACCCTTGAATTATTATGCAATTGGGTCAAGAAAGATAATTCCCTGCAGTCTTTTGTAACTTCTGGTTTTGGTACCTTTTTGGTACTTTAGGCAATAAACCTTTACCTTATAAACAAAAAAAAAATATTTTTCTATGGCTCCCTAACTTGCTAGGGGTTGAACAATTTTGTTGTCATGTTTGCTATTTTTTCTCTTGAATTATTTAAGGATAACTAGTTGTCATATTAATGAATTGATCACTCACAAAATGTCAATTTTCAATTTAAAAAAGATAAACCCCATCTACTTTTAAAACGAAAAGACGGTAAACAATAAGAAAATTAAATAAATCATCTACATTTATATATATATATATATATATATATATATATATACACACACACACACACATAGATGATTGAAGAAACAGCGTAAAAGAATCTATTTGGACTTTGTTCTTATGTGCTAAAAAAAGAAAAAAAGGTTCCCGTTAAACTTATCTTTTGAGACATTTTGTAGTGTATCGGCACTTCAGTTCCAAGTCGATATCATTCTACTATCTGTATGTGATCTTTGCTTCTAACTTGGAGGAACATTTTGTAACTTGATACCTTCAGCCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTA</genome_strand>
        <mrna_strand>CAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT.............................................................................................................................................................................................................................GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315770" ref_strand="+" ref_description="SGN-E315770 [cTOA-26-F13]">
      <seq>ttttacctaacaattctttgtatcaatacgtttaaattcttgtcattgtctgctttatctggatgttgacattcttggggtggggtgagggtggtgatttggtgggtggttagccttggaaagggcttgctcctatgttttgactttattctgctgctggccgaaactagtgaggatagtgatgcgtattggagctgatttggaaaataaaaggttgagaagtcctgattcggcaaccactgatccaagggggaccaagtgattcttaaatcaaactgtaagggcaaagtggaacattgttggttaacgttgcgcaaaagtccaaagttggaagatggtgacaaaatttatatgtaatctatgttgctgggattctccaagaaatagtgctgcacccatgctagatcctccaaaatgcactacttttgaaggattcgacatgctctcatcaacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="25759" stop="26816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26059" g_stop="26516" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E315770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26059" e_stop="26516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</genome_strand>
        <mrna_strand>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E391914" ref_strand="+" ref_description="SGN-E391914 [TUS-24-E14](-)">
      <seq>gcgtgctgcagatggaagtatggttttccggttgcgtgaaggtgtgggtgtggcaactaacaacgttgctgaatatagaggtgtaatcttagggctaaaatatgctcttgagaaaggtttcaaacatgtaaaagttaagggtgactcaaaactcgtctgcatgcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcaaccatatttacagagaattcaacactgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggatcttctctggtcttgttttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttctctaaagctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="27136" stop="60583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27436" g_stop="27457" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27458" i_stop="27536" i_length="79">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27537" g_stop="27680" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="166" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27681" i_stop="28858" i_length="1178">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28859" g_stop="28966" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="274" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28967" i_stop="29395" i_length="429">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29396" g_stop="29447" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="326" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29448" i_stop="29514" i_length="67">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29515" g_stop="29788" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="600" r_length="274" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E391914" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27436" e_stop="27457"/>
          <exon e_start="27537" e_stop="27680"/>
          <exon e_start="28859" e_stop="28966"/>
          <exon e_start="29396" e_stop="29447"/>
          <exon e_start="29515" e_stop="29788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGCTGCAGATGGAAGTATGGTATGCTCCCTTTCCATTTAGGAGATGTGGTTTGTCACCATAAATTTACAGGTTTTCGACTTGTAGTTCTTTTCTGTAGGTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAGGTCTTCTTTACTCTTCTTACTTCTGTTTTTGTTTTATCTTGATCTTCCCTTAAGCAAATTAGTCAATTATTTCTGCTTTTCCACTTTTAATATCCTGTCAGATTTATATATTCCAGTAACTTGTTGAAACAACTGAGTTCTAAAGCAATTGCTGAAGAACTTTTTCCGCTGATGTCCTAGCAATTAAGAGTGTCTGAGACATACTTATAAACCCCAGGCTACACAAAGATGCCCCAGAAAGTAGACCATTCCAAATAATGATAAAGTTGATCTCTGTTTATGGACTATGGTATTAAGTATTATCATCTTAAGTCATCCCTAGTTAGCCTGGGATGGAATAGCCGAAGTATTATCTTTAGTGTATACTCCACAGGTTGTATATGTATACTCCAAAATCACACAGTGGAATCCACACTGTGGATAACATGACTGGGTATGTTAGGGAGTACTAGATAGTTTAGAAGTGCACTCGAATAAGGTGAACTACAAAAACTAATTTGAGTTTATTATTATGTAATTCTGCATATAACTTTTTTCTTTTTATGAGGCAAAGTCGGTTCAGCTACATAAATCTAGAAATCAATTAATACTATATTACATTCAACACTTGACAGTGTTTTAAGAAAAGAAGAGAGAGAAATGATCCAAGGAAGCTTTTAAAAAGAAATGGGAAAAGCTAAGCATTATCCACCAAGTTTTGAATTGTGTCTCATTGATCCTCGGGGATTTCTGTTATATTAAAAAATGACAGAGCTAAGAGATGATGTGGCATAGAAGAATGAGCAGCAGTAGGCAAGCAGTTTGGATCCCCACATTGTCTTCGGAAAAATTGCTTCTGTTCATCCCAAAGTGAGCTGGAGAATAAAGGTATAGGTTAATTTGATTGTTTTGCAGAATGCCTAAGAGATTTTGCAGTGACAGATCTGGGAATGAGTATAAAAACCTTATATGATTCGGTATAAGCTTCCTTCTTGATGGCACCTTGCCCCTTCCATTCTAAGAGACACCCAAACCAGTTCAAAAGTGTAGCTATTCTTGCCCTTGTAACCTGTGTGACCTTATTCTGGGATCATGTGTTCTTGCGGTGCTATTTATATTGCATTAAGTATTAAGTTATTGCTGGAACTGCTTCAGGGATGATCTCTCATTCTTTAATTTTTTTTTTAATCATGGAACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCA</genome_strand>
        <mrna_strand>GCGTGCTGCAGATGGAAGTATG...............................................................................GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E578376" ref_strand="-" ref_description="SGN-E578376 [LE12DB02]">
      <seq>gcagactcaaggaatctggaaatgcaagaaccagaacatggctgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcacccatatttacagagaattcaaccctgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggaccttctctggtattagtttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttctctaaagctaactattctagccccctgaaaaaaaaaaaaaaaaaaaaacctgcagcccgggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="28556" stop="30096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28855" g_stop="28966" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28967" i_stop="29395" i_length="429">
            <donor d_prob="0.740" d_score="0.98"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29396" g_stop="29447" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="164" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29448" i_stop="29514" i_length="67">
            <donor d_prob="0.616" d_score="0.98"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29515" g_stop="29795" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="445" r_length="281" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="465"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E578376" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578376" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28855" e_stop="28966"/>
          <exon e_start="29396" e_stop="29447"/>
          <exon e_start="29515" e_stop="29795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACTTTGAA</genome_strand>
        <mrna_strand>GCAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCACCCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACCCTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGACCTTCTCTGGTATTAGTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCCCCCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E269900" ref_strand="-" ref_description="SGN-E269900 [cLEM-17-L16]">
      <seq>caagaaccagaacatggttgagctatccaagattgtgaaagagcttaaagatcattttgtatcattccagatcaaccatatttacagagaattcaacactgaagctgatgcccaggcaaatttagccgtgtatcttaagagtggtgaatttcaagtggaatgtgacaagaaaacaacttaatattgtgaagtcaccaactaccccaacttgcttgggggattttgtgaaggatgaatgacactcaagaccgatgcataatggatcttctctggtcttgttttttttttttgtagatatataatctgaatcatctggattagagaaacttctgtttaggggcctgctcgaatccattattctcttctcacttgcaatggaaattaattagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="28579" stop="30066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28879" g_stop="28966" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28967" i_stop="29395" i_length="429">
            <donor d_prob="0.740" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29396" g_stop="29447" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="140" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29448" i_stop="29514" i_length="67">
            <donor d_prob="0.616" d_score="1.00"/>
            <acceptor a_prob="0.849" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29515" g_stop="29766" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="392" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E269900" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269900" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28879" e_stop="28966"/>
          <exon e_start="29396" e_stop="29447"/>
          <exon e_start="29515" e_stop="29766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGAGTATGGCCAACTTTCTCCTCTTTTGCTAATTCAGAGCTTACTGAGCCTGTCTATCAGAATTTTGATCTTTGAAGTCCTTATTATATCTTGCATCTGCATCTTATTTCTGTGGTGAAAATGCTATAGTGTGTGTTATGTGTGGTCTCCTGTGACCAGAAAAGGTGCAAGTGGTGGGTGCTTGAATGTCATGTTTAATTTATGCAACAATGAGTTTCATCCATCTTGCTTATGAGCTCTATGAAATTGGTTTCATCACCTTGTTGCTAGAAGTGAATAGTCATGTTTGTCCGGTCTATTAATTCACTTAGTTTCGCATTTCTCTTCGTGAAACGTTTAAACTAAACTTGTACATATGTACTAAACTCATGATTGTTTAAAAAGCCATCTTCTCATCTCATTCTGAGGGGTTTTACTTGTTTGACATATCAGGAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGAGTAAGGGTCTTTCTTTTGGTAGTTACATACATCTCTCTTTCCCGGTGATAAGAAAAATTTCTTGCAGGTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTC</genome_strand>
        <mrna_strand>CAAGAACCAGAACATGGTTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA...................................................................GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E551826" ref_strand="+" ref_description="SGN-E551826 [cTSB-1-P19]">
      <seq>gttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaaaaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtgttatgcagttctttgatctttttcttccttagcatatgttcctttccgcaacttataaaaatacttgtgaattactaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="29925" stop="33573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30225" g_stop="30622" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31321" g_stop="31374" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="452" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31375" i_stop="31930" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31931" g_stop="31990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="512" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31991" i_stop="32947" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32948" g_stop="33273" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="838" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E551826" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30225" e_stop="30622"/>
          <exon e_start="31321" e_stop="31374"/>
          <exon e_start="31931" e_stop="31990"/>
          <exon e_start="32948" e_stop="33273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATG</genome_strand>
        <mrna_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAAAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716572" ref_strand="+" ref_description="SGN-E716572 [FB17BG09]">
      <seq>gttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcgggggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgaaaactaccaggatatgttctgcaactgaggaaaatggtgctactgctgttgccgaaaaaaaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttaaaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaaacatttttgtgttatgccagttctttgatctttttcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="29925" stop="33521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30225" g_stop="30622" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31321" g_stop="31374" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="452" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31375" i_stop="31930" i_length="556">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31931" g_stop="31990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="512" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31991" i_stop="32947" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32948" g_stop="33221" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="788" r_length="276" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E716572" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30225" e_stop="30622"/>
          <exon e_start="31321" e_stop="31374"/>
          <exon e_start="31931" e_stop="31990"/>
          <exon e_start="32948" e_stop="33221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGT-AACATTTTTGTGTTATG-CAGTTCTTTGATCTTTTTCTTCC</genome_strand>
        <mrna_strand>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGGGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAAAACTACCAGGATATGTTCTGCAACTGAGGAAAATGGTGCTACTGCTGTTGCCGAAAAAAAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAAACATTTTTGTGTTATGCCAGTTCTTTGATCTTTTTCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347594" ref_strand="+" ref_description="SGN-E347594 [cTOF-26-O22]">
      <seq>ttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="29926" stop="33472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30226" g_stop="30622" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31321" g_stop="31374" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="451" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31375" i_stop="31930" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31931" g_stop="31990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="511" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31991" i_stop="32947" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32948" g_stop="33172" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="736" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E347594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30226" e_stop="30622"/>
          <exon e_start="31321" e_stop="31374"/>
          <exon e_start="31931" e_stop="31990"/>
          <exon e_start="32948" e_stop="33172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCC</genome_strand>
        <mrna_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347824" ref_strand="+" ref_description="SGN-E347824 [cTOF-26-H4]">
      <seq>ttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcangcttcaagttgcaaacattgaatctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="29926" stop="33345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30226" g_stop="30622" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31321" g_stop="31374" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="451" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31375" i_stop="31930" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31931" g_stop="31990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="511" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31991" i_stop="32947" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32948" g_stop="33045" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="609" r_length="98" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E347824" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30226" e_stop="30622"/>
          <exon e_start="31321" e_stop="31374"/>
          <exon e_start="31931" e_stop="31990"/>
          <exon e_start="32948" e_stop="33045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAG</genome_strand>
        <mrna_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCANGCTTCAAGTTGCAAACATTGAATCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312533" ref_strand="+" ref_description="SGN-E312533 [cLEZ-20-F14]">
      <seq>ttccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="29926" stop="32286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30226" g_stop="30622" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31321" g_stop="31374" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="451" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31375" i_stop="31930" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31931" g_stop="31986" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="507" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E312533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30226" e_stop="30622"/>
          <exon e_start="31321" e_stop="31374"/>
          <exon e_start="31931" e_stop="31986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGT</genome_strand>
        <mrna_strand>TTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283660" ref_strand="+" ref_description="SGN-E283660 [cLES-1-J5]">
      <seq>tccttccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="29927" stop="31665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30227" g_stop="30622" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31321" g_stop="31365" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="441" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E283660" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30227" e_stop="30622"/>
          <exon e_start="31321" e_stop="31365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAAC</genome_strand>
        <mrna_strand>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317367" ref_strand="+" ref_description="SGN-E317367 [cTOA-28-C22]">
      <seq>ccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaaatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtggtatgcagttctttgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="29932" stop="33512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30232" g_stop="30622" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31321" g_stop="31374" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="446" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31375" i_stop="31930" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31931" g_stop="31990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="506" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31991" i_stop="32947" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32948" g_stop="33212" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="770" r_length="264" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E317367" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30232" e_stop="30622"/>
          <exon e_start="31321" e_stop="31374"/>
          <exon e_start="31931" e_stop="31990"/>
          <exon e_start="32948" e_stop="33212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAA-ATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCT</genome_strand>
        <mrna_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAA-ATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGGTATGCAGTTCTTTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294558" ref_strand="+" ref_description="SGN-E294558 [cLET-22-M24]">
      <seq>ccatttgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaagtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="29932" stop="31670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30232" g_stop="30622" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31321" g_stop="31370" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="441" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E294558" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30232" e_stop="30622"/>
          <exon e_start="31321" e_stop="31370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTT</genome_strand>
        <mrna_strand>CCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAAGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294767" ref_strand="+" ref_description="SGN-E294767 [cLET-17-B21]">
      <seq>gttgtaatctgttttctggataagagggaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggcggttattcttgctcttcaacttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgcctaagaagaatctgttgctcccactacatatgatcaaactgtttctgtttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="29936" stop="30887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30235" g_stop="30587" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E294767" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30235" e_stop="30587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCG</genome_strand>
        <mrna_strand>GTTGTAATCTGTTTTCTGGATAAGAGGGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGCGGTTATTCTTGCTCTTCAACTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCTAAGAAGAATCTGTTGCTCCCACTACATATGATCAAACTGTTTCTGTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284924" ref_strand="+" ref_description="SGN-E284924 [cLER-19-F14]">
      <seq>tgtaatctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="29937" stop="33294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30237" g_stop="30622" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31321" g_stop="31374" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="440" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31375" i_stop="31930" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31931" g_stop="31990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="500" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31991" i_stop="32947" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32948" g_stop="32994" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="547" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E284924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30237" e_stop="30622"/>
          <exon e_start="31321" e_stop="31374"/>
          <exon e_start="31931" e_stop="31990"/>
          <exon e_start="32948" e_stop="32994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTT</genome_strand>
        <mrna_strand>TGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317398" ref_strand="+" ref_description="SGN-E317398 [cTOA-28-O4]">
      <seq>tctggcttctggataagagtgaaaaatcactctgaggaatttgcgtcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="29942" stop="33280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30242" g_stop="30622" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31321" g_stop="31374" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="435" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31375" i_stop="31930" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31931" g_stop="31990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="495" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31991" i_stop="32947" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32948" g_stop="32980" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="528" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E317398" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30242" e_stop="30622"/>
          <exon e_start="31321" e_stop="31374"/>
          <exon e_start="31931" e_stop="31990"/>
          <exon e_start="32948" e_stop="32980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGG</genome_strand>
        <mrna_strand>TCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347255" ref_strand="+" ref_description="SGN-E347255 [cTOF-25-P9]">
      <seq>tcggaaaaaaaaaatatggcgaccgtctcagcattttccgtttgtagagccaaatctcattctcgaattccccattcttcatctaatgcaattccccagcttttcccaatgcaatttcttcggtgtcaaagcaacaggagcattggcggtggttattcttgctcttcaagttcggtgaaagcgaaggtacctttgagaactaccaggatatgttctgcaactgaggaagatggtgctactgctgttgccgaagaagaatctgctgctcccactacatctgatcaaactgtttctgtttccgtccccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacatttgaatctgagctttcaggatgaagaagatattagctaaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="29987" stop="33437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30287" g_stop="30622" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31321" g_stop="31374" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="390" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31375" i_stop="31930" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31931" g_stop="31990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="450" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31991" i_stop="32947" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32948" g_stop="33137" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="642" r_length="192" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E347255" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30287" e_stop="30622"/>
          <exon e_start="31321" e_stop="31374"/>
          <exon e_start="31931" e_stop="31990"/>
          <exon e_start="32948" e_stop="33137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACA-TTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCT-AAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATC</genome_strand>
        <mrna_strand>TCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCCCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299062" ref_strand="+" ref_description="SGN-E299062 [cLET-42-G1]">
      <seq>aatctgctgctcccactacatctgatcaaactgtttctgtttccgtctccccttccgacgttctaactatgttctttcaggcagaaggaacaatgaatgaagctgctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtgttatgcagttctttgatctttttcttccttagcatatgttcctttccgcaacttataaaaatacttgtgaattactaatgatcagcagaatcattttgtttaaaaaaaacttataaaaatacttgtgaattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="30243" stop="33595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30543" g_stop="30622" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31321" g_stop="31374" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="134" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31375" i_stop="31930" i_length="556">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31931" g_stop="31990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="194" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31991" i_stop="32947" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32948" g_stop="33295" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="542" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E299062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30543" e_stop="30622"/>
          <exon e_start="31321" e_stop="31374"/>
          <exon e_start="31931" e_stop="31990"/>
          <exon e_start="32948" e_stop="33295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAGGTTAACCCCTTCTTTTCTATTTTGGTAAAGTTTCTAGTTTTTTCATTAAAGAACTCAACCAATGTGAACCCGAAAGGGTTGCTGTAGGTTAATAACTAGTGTAGGAATAGTTAATTGTGGTTGTAATGAATTTCAGTGGTTTGAACTTGGTTCTTGTGAAGTTTCTAATATTGTCAAAAAAATCAACCAGTGTGAATTTCTGATTAAAGTGAAGAGGGTTGCAGTAGGTTAATGCCTAGTGTGTACGAATAGTTTATCTGGTAGTAATGAATTTCAGTCTGTGCTCATATTGGTATGAAATGGGTTCTTGTGAGGTGAATTTTATCCAAAAATTCTAAGTAAGTGAATTCGCTAAGTTAGGATAATGGAGGAGGAGGAGGTTAATTCTCAGTGTAAGGCTGTAAGCATAGTAAATTTATTAAGAATTCTGATAGTACTGGTATTTGATAGTGCTTGCTCATATTGGACTATTGGAGTGAAATGGGTCGGATAAGAACGCATATACAGGATTGGTATAGCCCAACTCCAACTAGTTTGGCAGTGAGGTTTAGTTAATTTATTGATTGATTGTCTGATTAGTGCTCAATGTGCTAGTTTTGCTTTATTTTTCTTTCAAATTGTTAGTTGTCTGTAACCCTTAAACTTCTTGTGGATTCTTCTGTGAATGGTAAACTGAACTTATACCTTTCTTATCACAGGCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTA</genome_strand>
        <mrna_strand>AATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E318370" ref_strand="+" ref_description="SGN-E318370 [cTOA-29-J19]">
      <seq>gaacaatgaatgaagctgctattccttccgtgactaactctttagaggtaaattgagtgtgtaaaattcaaagcttcttctggtacatgctaatttgttgacacttcacaaaacacattacttgtctgctgcatttgagatacaatgtagtagcagttgcagggactctgagtttttatttttctgtgtaatattaatgctacttgtgaatcaccagaagactcgctattacattgaagagtgaaataaacaacacaggttgtttacactttaaaggacaaattaaagaaaggaaaacgttctgatctttctgagggatttaaactctttttttcttggaactaggcatatctgagatcttataatctagaatcaaagaatcagatacagatattcatctgattctagtttttcagaagctgcaagagagaactattgattttgtgaatgtttgatggagagctatatctctttctccacctctatcaaaacatcagattttagctaataattggaattgaagaataattgcaggttgccctaattaaaaaagaaaacaagtagttgtagtttgacctttatcgtctgtccatatgtatacaggatattgaaggcattacaggtctcaaaattcaagttgtcgaaggcattgcaagtgtcgaggtgattcacatatataatgcttctcttacattgacttattagcctattctgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="31028" stop="32343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31328" g_stop="32043" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E318370" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31328" e_stop="32043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTT</genome_strand>
        <mrna_strand>GAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAAGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266644" ref_strand="+" ref_description="SGN-E266644 [cLEI-5-E18]">
      <seq>gaactattgattttgtgaatgttggatggagagctatatctctttctccacctctatcaaaacatcagattttagctaataattggaattgaagaataattgcaggttgccctaattaaaaaagaaaacaagtagttgtagtttgacctttatcgtctgtccatatgtatacaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgaggtgattcacatatataatgcttctcttacattgacttattagcctattctgttacaggaaatttctttgtagaaagtttacagctcaatcagcataatgcaccttagagatatattaaagtactaaattctgaagcatgctttaggttccttgtagtttcctacattcaatatgcaatatagtggacaacttccaggtggactatcttgtgctgcctttttgtgtttggagtttctctataaatgataggaacagtctatctaaatgaacgatatcctttaacttttgatggtgagggaaaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="31457" stop="32597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31757" g_stop="32297" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E266644" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31757" e_stop="32297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAA</genome_strand>
        <mrna_strand>GAACTATTGATTTTGTGAATGTTGGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTGATGGTGAGGGAAAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266510" ref_strand="+" ref_description="SGN-E266510 [cLEI-5-E22]">
      <seq>gaactattgattttgtgaatgtttgatggagagctatatctctttctccacctctatcaaaacatcagattttagctaataattggaattgaagaataattgcaggttgccctaattaaaaaagaaaacaagtagttgtagtttgacctttatcgtctgtccatatgtatacaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgaggtgattcacatatataatgcttctcttacattgacttattagcctattctgttacaggaaatttctttgtagaaagtttacagctcaatcagcataatgcaccttagagatatattaaagtactaaattctgaagcatgctttaggttccttgtaggttcctacattcaatatgcaatatagtggacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="31457" stop="32480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31757" g_stop="32180" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E266510" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31757" e_stop="32180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAAC</genome_strand>
        <mrna_strand>GAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGGTTCCTACATTCAATATGCAATATAGTGGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293058" ref_strand="+" ref_description="SGN-E293058 [cLET-12-A22]">
      <seq>gctattccttccgtgactaactctttagaggatattgaaggcattacaggtctcaaaattcaagttgtcgagggcattgcaagtgtcgagttaacaaagcaaacgacaatacaagctacaggggtggcttcaagtttggttgaaacaatacaaggttcaggcttcaagttgcaaacattgaatctgagctttcaggatgaagaagatattagctaagtggtggcttgtagaattcagagacatgataggctgatatctttcacgggcatcctgagagatctctgtttatttgtatgccagtagtttcagtaagcctatatctgtaacatttttgtgttatgcagttctttgatctttttcttccttagcatatgttcctttccgcaacttataaaaatacttgtgaattactaatgatcagcagaatcattttgtttacttgttgaaacaagtggtatacgattggaaaaagtacttcttatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="31604" stop="33641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31931" g_stop="31990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="90" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31991" i_stop="32947" i_length="957">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32948" g_stop="33341" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="484" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="494"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E293058" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31931" e_stop="31990"/>
          <exon e_start="32948" e_stop="33341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAACTTTTAGTTCTTCAAAAGTAACCTAAAAAATTATTATTTGTGAAAAGAAGGCTGTTTAAGTACTTATTACATTTTAATCTTTAAAATATTCTGTAGAAAATCTAACAGTGTCAAAGCGCTATCCTTTGAAGTTTCTATTTCCCCTAGCATACAAATAACCTCAAATCCCAAAAAGTGTAAGAATTTCATTTACATAGATCAAGCATATAAAATTGGAAAGTAAAGTTGCCATCTATTTCCATCAGGATTCAATTCTGAGTTCCTTATTTCAGCTTATTGCCTGATCTGCATATTAGTATCCTTGGTGGCATGTAAGTGTCTAGGATCTTGATCATCTAATTGTGCATCCAATATAAGACCTTAGGAAATTGATGAGATTAGGGCTAAAGGTAAGAAAGAACTCCCAGTGTTGTCCTAAATTAGGAGAAATCACCTTCCCTTCTTATGAATAGAGAACGAGAGAGAACCATTATTGTGGTGAAAATTTTCCTCTAAACTTACTGTTACCTAAGAATATAAGAAGCATTTAAGGACATATCAGATGTCTCTATTTTCTTCATTCAGAACTTCAATAAGGCATTTGAAGAACCAAGAAATGAAACATGGTATGTCCTTGGTTCAGTGTTAACCTCTCTTTTTATTTGATGTAGTTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAGGTACTTCTTATGA</genome_strand>
        <mrna_strand>GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAAGTACTTCTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365769" ref_strand="+" ref_description="SGN-E365769 [cLPT-8-N20]">
      <seq>tcaagctgacatagcaccactgatgtccactcttcttggtctgccatgtcctgtcaactcggttggcaatctgcctcttcagtacatgaatctgaacaaggcagaagaagttgaagctgtgctggccaatacgaagcaaatcctcaatcagttccttcgaaagtcacagttaaagcaatcgacctcattatacatcaagcctttcaagcccttggctagttattcatcactattgcgtgaaattgagcaactgatttctctcaaagagtatgaaactgcaatgaaattatctgaacagcttaggagcttggcacttcaaggacttcactatttccagacatatgattggctgatgctgatgactgtaatcactcttggctatgttggttggatgatctatgtgatactccatgtcttgcaatcttatacatccctacctgcaaatatttttagcaaggagcaagtgcctagtccaagaagtacagctaagatacatcttttaggagggttgttgatgggagtagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="36379" stop="39448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36679" g_stop="36703" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36704" i_stop="36807" i_length="104">
            <donor d_prob="0.881" d_score="0.00"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36808" g_stop="36882" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="100" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36883" i_stop="37033" i_length="151">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37034" g_stop="37100" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="167" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37101" i_stop="37481" i_length="381">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37482" g_stop="37804" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="490" r_length="323" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="37805" i_stop="39112" i_length="1308">
            <donor d_prob="0.985" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39113" g_stop="39148" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="526" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E365769" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36679" e_stop="36703"/>
          <exon e_start="36808" e_stop="36882"/>
          <exon e_start="37034" e_stop="37100"/>
          <exon e_start="37482" e_stop="37804"/>
          <exon e_start="39113" e_stop="39148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCTGACATAGCACCACTGATGGTCGATTACCTTGTCCTCTTCTGACAGTCCTATCTTTGAAGTGTCTTTCTATCATATCAACTTCGTCTAAAGTCTGACTCTGATATGATCTCTAAAAATTGCAGTCCACTCTTCTTGGTCTGCCATGTCCTATCAACTCAGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAGGTAGCTGCATTACTATAAGTTCTCTGTCTATTTTGCACTGTACGACTGTGTGATGGATTGGGAGAGATATACTGGTTTGCTGGTTCTTTGGGGCTATTTTGTTCTTTGTATTGAGATAGAATGCAGGTCTTAAAATCACTTTTATGTCCAGGCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCACGTATCCTTCCCTATAACTTAGATTGTTTTTCACTTCTAATTTCATTCTGCCTCACTCATCTTACATGTTATTTCCTAATTTTCTTTTTGTTGCAATTCACAACTTTCAGAGTTTTAAATGTCAGTTAAGATAGAACCTTATTAAAAGAAAATGTCAGTCAAAATAGAAGTAACTGGTAGAACGATTTAAGTATAGCATATACCAGAATTAGGACAAGTTACCAATTATTAGACCAATAGAGGGGCAAAGTGATAAAATTAATTCCTGTGCTGTCATTCCAAACTGCTTCATCAATGTAACTGGGTTCTGGGGCTTGTCCTGTTTTCACATTCTAAATTGATTTTTGGTTTCATCTTTTGAGCATCCTTGACAAATATGTAGAGTTAAAGCAGTCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAGTGAAATTATCTGAACATCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTTCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTCATACTCCATATCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGACCAAGTGCCTAATCCAAGAAGTACAGTTAAGGTACCTGTTTTGCTCTATATGCACGTGCTGTTGTGTATTTCTTTGTCTGTGTTGGTTAGAAGAGGGTTGTAAAGGGAAGGTTCAAAATAAATTATATGTCTGTTTGGTGTTGAAAGTGTGATAGATTAGTAGGAAAAAGGGAGGAGGAAATTGACATATAAAAGCATTTATGTATGAAAAGTACTCGTGTTGTGCAAGTTCAAGTAATTTTCTCTATTTATACTAAAACCAACAAAAATATCTTGACTGTTGATATATGATTTTAATTCGAGGCGGAGATATACAAAGGGTTGTCCCGTTGTTTTGCTACCTCTTTGAGATAGAGTACATCTAGTGACAAATATTGATATGCCAAAATTACACATGTTCCTAAATCATATAATCTATTTCATAGCTCCAGAAAGTTCAAAGGTGAGACCATAATCAGTTTATCTATGCATTGTAAGTGGGAGGAGCAGGTTTTCCACCAAAACTATAGAAAGTAAAGACTTACTAAGGAAAGAAATTGAAATGTAAGAGCAAAGTGGGAGTAATGACACCTGATGTTCATTTGGACATTAATTCTCTAGGTTTTTTTTCTTTCAACCCCCAAAGGTTTCTCCTTTCTTCTTTTTCTAAAATGTCCCATGAAAGTCATACCCATCTTGGAGACCATATTTGGTTATATTTTGTCTCTATTATGCCTGATCTCCAAAGCTATTGTATCTAGTGTTGTCAAAGGCACGCTAAAGCCTGATATGAGGCTCTAAACGTGTTGAGTGCTTCGCGTCACTTAGTATGTGCTTCACTGTCGTCATCAAGGTTTTAAGACATACAAACCTTGCCAATGAGTGGTTCTTGAAGAGACGGCACTAAAAAATTAATCTTTCAGTGTCTTTGTATGTTATATATGTTATTTGTGCTTATAATATTAGTCTTGGACTAAACATATGTAATTTTGTATCCATTTGCGTCTTTTTCATAAAAGCCACACTTTATTTGCGCTTTGCGCTTAAAGACCCAACAGACGTTAGAGTTATTTTTGTGTTTTTTGCTTTTCATAACACTGATGAATCAAGTGTTCATCTGGGACTTCTCATCAGGGAAATTCTTAAAAACTTATATTATCACGGTCCTCTATTGGCGTATTCATGCCTCTTCTTATTATACTATTTTGGCATTTAGAAATTGATGTTATTAGCACAAGTGTCTTCCTCCCATAAAAATAGATGGATATTCTTGACCGTCATTCGTAAGGTGATACTAGAAAGAATTGCTATCTGACCAATTGATTCCCATGTTCTTGCTTATATTCTTTTTCTATGGCAGATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</genome_strand>
        <mrna_strand>TCAAGCTGACATAGCACCACTGATG........................................................................................................TCCACTCTTCTTGGTCTGCCATGTCCTGTCAACTCGGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAG.......................................................................................................................................................GCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCAC.............................................................................................................................................................................................................................................................................................................................................................................................AGTTAAAGCAATCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAATGAAATTATCTGAACAGCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTCCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTGATACTCCATGTCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGAGCAAGTGCCTAGTCCAAGAAGTACAGCTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342211" ref_strand="+" ref_description="SGN-E342211 [cTOF-10-N2]">
      <seq>tttggctttcaactattcatagaacagagaagcaggaattattagtcctccaccaactgttgaattggtccatagctggcttctcgatgatacctcccacctcttttcagctactggtctcttatccaggctgacttccacttttccttggcgttgcacctcccttcctgcttctatcaatcggttatgaagcagtcttctatggtgctctcagtcttgcacttatagcatggatactggcggaaaatgcttatctccatataagcaagttcagatcatcagctccagtcaaatccatggaggatgataataggtgtctggagttatccgatatgaggatcccattaacttttatggtctttttcaatattgcattctttggaactggtaattttgcaagtattgcaagttttgagatctcctccgtgtatcgattcattacaattttcagtccttttctgatggcggcattacttattttcaagctgttgataccattcatacttgtcatatgtgcgttcagtgcaatcacaaaattggtgcaagttccattgttgggatgctattttctggntgatcttgtgctctgatgtaatgacaatccatttcttcttcctggtccgaaataaaggaagctggatggaaattggcaacagcattagccatttcggaattatgagtgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="39686" stop="43495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39986" g_stop="40063" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40064" i_stop="41073" i_length="1010">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41074" g_stop="41176" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="184" r_length="106" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41177" i_stop="41267" i_length="91">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41268" g_stop="41436" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="353" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41437" i_stop="41617" i_length="181">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.419" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41618" g_stop="41716" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="452" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41717" i_stop="41814" i_length="98">
            <donor d_prob="0.894" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41815" g_stop="41873" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="511" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41874" i_stop="42782" i_length="909">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42783" g_stop="42888" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="618" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42889" i_stop="43128" i_length="240">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43129" g_stop="43195" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="685" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E342211" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39986" e_stop="40063"/>
          <exon e_start="41074" e_stop="41176"/>
          <exon e_start="41268" e_stop="41436"/>
          <exon e_start="41618" e_stop="41716"/>
          <exon e_start="41815" e_stop="41873"/>
          <exon e_start="42783" e_stop="42888"/>
          <exon e_start="43129" e_stop="43195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTGGTATTCTTTTTTTCTTTTCTCCGTATGCTAGTGTAGCTCAGTCTTAGAATTGTTCTCGGATGTCCTATGAACAGAATTGATGTAGCCTTTACACCCATTTATTCCTTCAATTTTTTGTTTTGTTAATGCAATGGGATGTTAAACAGTGAATTCGAAAATGGTGAGATTTTACATTTTCTTAATAATTGTTCTAGTAAAAGGCATGCTATCCAGACTTACTTTTCAAAATTTCTCTTCTCCTACTGGGTGTCTTACAGTTGCCCTCCTCACACAGCTGCTTGTCTTCATCAGCATTGGTGTCCCATGTCAAATGTGTAAGACATGAATATGGCATTAACTCAAACAAGAGTCTGTGTCATGTAGGTTGCATCCAGTCATACAACAGCTACACCTCAGTCCCAATCAAAATGGGATCGACTATATGAATGCTCACCGATTATGTTCCTCATTCATGTTCATCTCAGGCCAACATTTTACAAAATTTCAAATAACTAACTAAAAGTTTTCTATATTTCCTACTGGCATAAGAATCTCTAATAGGGCTTAAAAAACTCTGAGAAAGCACAAGACCTAAAAACTTGATAACATTACTAGAATAAATACTCAACTAATTGGTATCACCTATATAGATCATTTTCTTCTATTGTGCCCATCCACAAATTACAAAGAGATTGTAAAACTTCATTGACTCCTTCCATGTGATTTTATGAATAATTAGTAGGCTGTATCCCTTCATAAAGAAATAATATCTTTGGTAGACGTCAACTAGTTTATGGTAATGTATCGCGTTGTTGCATATCAGACTGTCCTTTGTTACTCTTGCCCTCATTTTCGGGCTCTTTTGGTTCATTTTAGTGATAAACTTTTATGAAGCTTTTCCTGACTAATTTTGTTTCTTTATAACTATTTGTTTCACTATTTTCTGTTCTTCAGCCTGAAATTTCACATATTTTGTTTTCTTTGTGAACATTTTAACAACCCTGTATTCATCATTTGACTTGTTTCTTTAGGCTTCTCGATGATA-CTCCCA-CTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCA-TTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGGGTATCTCCATCATTTTGTTGCTTAGGCTAGGAGTAAATTCAATTTTATAACTTTATGAGTCAGAATCTATAAGCTTTTGAATCTCCTGCAGTTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTTGTAAGTTTTACGTTCTGTTTAGCTTAATGATGTTCTACTTATGGAAAAAAGAAAGACAGTGACATTGTCTTTAGCCTTGTTAATTTAACACTTTTGGGGTGTAAGCATCTAGCTCTGTTGTCTTTCTATATATCCAAATAGTGAAGTGTCTTAAATTGCTGATGAAATTTCTTCTTTTTAGATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGTGTAAGTGGAACTGAACATCCTTGTTTATGAATCCTTTGTTTCTTATTTTGCCTTTCATTTGCATATGGTGACAGATGCGATTGTTCCTTTTTTTGCAGCCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCATGTAAGTACAACTTGCAAATTTTCCTTCTTAACAGTTCGAATGGAAAACTACTGTAATTCAATGATTGTGGTGGAAATCTTTTCTTGGAGTTTCTAGGGCTTGGAGGTTGTTTTTCTCCCTCAAATTCATCCAAATTAGATGTGACAATTACCGACCACTCTTACATATCTAAAATATTGGTTTGAGGGATTGCCTGTTGCAGCGCTCAACTTTCACCTGTTGAGACACTCCTCGCTGCCTGGAGCAACTAGAAGATATTGTTAAAGCGTTGCAGCGCCCAAATTTCGACCGGTGCTACGGTGGCTGCTGTTTTCCACGAATATATCTAAATTATTTCCAACTCCAAATTGTTCTCCACTTGCTTCAATCCACTCCTCCTCATTTCCAAACATCCATATTACTTTCCAAATACAACTTTTGAGTGCTGAACACTCTTGTGGCAACTTAACCGCGTTATTAGTTGTGTTAGCCATAACTAGAGTGTAGAAATCTTCAGGGTATTTTACCATCTTTCTGTGTTGGGTGGTTGGGTTCTTCTTGGTATTACCTTGCAGCCTTTACATGTAGGCTGTAGCCCTGCAATTTCTTCTAGTGTGGGTGAAGTTCATTTGGTCATGATTACTCCTCTCTTAAAAGTTATTCAGTGCATTCCCTGTTTTAAAGTAATTGTTGGCTAATTCAAACTTTTAAGATAACAAAGTGCAGAGCACAAGAACTACCTGATCTTCACTGAGAACAAACTGCAGTATAGGAACCTATATTTATACGTCAAGAAGCCTTTAGAATTTTTGGAGACCAAGAAAATTTGTATTTGATATGCAAGTAGAAATATTTTGGAATTCTTGGTCTTGCTGAGATCAGTTGTGTACCATGGATGACTTTTATTTTTTTGTTGTGCATTAACTGCAGATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGG-TGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTGGTAAGACACTATTATTCCTCCTATGGTGCAATTCTCATATGTTTCTCCACCTACTTTCCATCCAATGTGTCTTGTTTGAAAAACTTAGGATTCCAGTATCAATATGCTCTTCTCTGTCATAATCTTCAACAGCTTTGAATTTTTCTGTTTCATGCTTCCGACTGTTTTATCTCCAGAAACATGATTCAGGGGGTTCATCATGGTTAGGATTCATCTTACTTGTTTTCTGATTGGTAATAGGTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</genome_strand>
        <mrna_strand>TTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTCGATGATACCTCCCACCTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCACTTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGG...........................................................................................TTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTT.....................................................................................................................................................................................ATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGT..................................................................................................CCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGGNTGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTG................................................................................................................................................................................................................................................GTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306002" ref_strand="+" ref_description="SGN-E306002 [cLEY-17-P9]">
      <seq>ttaaataaaaaataaaaacatatatcattgaatgaagagaagtgagaaatatgaagaccccattgaagccctccagctatttcccatcccccatttacctatttccctctcctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51113" stop="52056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51413" g_stop="51756" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E306002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51413" e_stop="51756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACC</genome_strand>
        <mrna_strand>TTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731244" ref_strand="+" ref_description="SGN-E731244 [LA26CC07]">
      <seq>attgaagccctccagctatttcccatcccccatttacctatttccctctcctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacnatcccagatttgctcaagctttgagaaatgcttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51174" stop="52588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51474" g_stop="52288" g_length="815"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="815" r_length="815" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E731244" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51474" e_stop="52288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTA</genome_strand>
        <mrna_strand>ATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACNATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729517" ref_strand="+" ref_description="SGN-E729517 [LA21BC02]">
      <seq>cgatgacctccagctatttcccatcccccgtttacctatttccctctcctttttttaggcatttgttttctattaactttcccttctcaaacacgtgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51177" stop="52648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51476" g_stop="52348" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E729517" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51476" e_stop="52348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTT-TTTTCTATTAACTTTCCCTTCTCAAACAC-TGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGT</genome_strand>
        <mrna_strand>CGATGACCTCCAGCTATTTCCCATCCCCCGTTTACCTATTTCCCTCTCCTTTTTTTAGGCATTTGTTTTCTATTAACTTTCCCTTCTCAAACACGTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689773" ref_strand="+" ref_description="SGN-E689773 [LH_Ea01M11]">
      <seq>tcctcgtgccgaattcggcacgaggtgaagccctccagctatttcccatccccacttctcccatttacctatttccctctcctttttttagccatttttttctaatactttccctttctctaacactcagctgaaaaacagagcaaatggggttaactcttcttctttttctttgcttcgctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcgtattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcaccaactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatactcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaagttgggccgtaaagattcttttacttcaaaagcttcgttggttgaagggaatctgccccgacccacaatgtcgatggatcaaatcattaaaattttcgggtcaagagggttttcggtaccggaaatggtagcattatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatcccttctacaatcccagatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51189" stop="52564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51502" g_stop="52264" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="822" r_length="763" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E689773" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51502" e_stop="52264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTT-CTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTG</genome_strand>
        <mrna_strand>CCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTAAT-ACTTTCCCTTTCTCTAACACTCAGCTGAAAAACAGAGCAAATGGGGTTAACTCTTCTTCTTTTTCTTTGCTTCGCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCGTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCAACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATACTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAAGTTGGGCCGTAAAGATTCTTTTACTTCAAAAGCTTCGTTGGTTGAAGGGAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATTAAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCATTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCCTTCTACAATCCCAGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339637" ref_strand="+" ref_description="SGN-E339637 [cTOE-16-N16]">
      <seq>ctatttccctctcctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51211" stop="52287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51511" g_stop="51987" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E339637" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51511" e_stop="51987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTC</genome_strand>
        <mrna_strand>CTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266228" ref_strand="+" ref_description="SGN-E266228 [cLEI-3-I22]">
      <seq>ctttttttagccatttttttctattaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51224" stop="52347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51524" g_stop="52047" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E266228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51524" e_stop="52047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACT</genome_strand>
        <mrna_strand>CTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728514" ref_strand="+" ref_description="SGN-E728514 [LA18AC10]">
      <seq>ttaactttcccttctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51247" stop="52485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51547" g_stop="52185" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E728514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51547" e_stop="52185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCC</genome_strand>
        <mrna_strand>TTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704534" ref_strand="+" ref_description="SGN-E704534 [FA24CC04]">
      <seq>gaggctcaaacactgagctgaaaaacagagcaaatgggtttaactcttctgctttttctttgcttctctgttatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51260" stop="52655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51556" g_stop="52355" g_length="800"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="800" r_length="800" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E704534" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51556" e_stop="52355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAA</genome_strand>
        <mrna_strand>GAGGCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249582" ref_strand="+" ref_description="SGN-E249582 [cLEF-56-P2]">
      <seq>aaaacagagcaaatgggtttaactcttctgctttttctttgcttctctggtatcttaactccttctttatcacagcaccattcgccgctaaatactgcttattaccggagatcatgtccaagatttgaacaaattatgcaagaaaccactacaaacaaacagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51277" stop="52557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51577" g_stop="52257" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E249582" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51577" e_stop="52257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCC</genome_strand>
        <mrna_strand>AAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGGTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709140" ref_strand="+" ref_description="SGN-E709140 [FA42DC03]">
      <seq>cgattcagatcacttcacctactaccgccgccgctaccctccgtctcttcttccacgactgcttcgtcggcggctgcgacgcgtccatcctcgtctcctccactcctttcaacaaagctgaacgtgacgcagaaatcaacctatcactccccggcgatgggttcgatgtagtcgtacgcgccaaaacggcgcttgaacttgcttgccccggcgttgtctcttgctccgacattctcgccgtcgctgcccggaatctcgttgttcaaaccggaggcccgttttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacctcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51436" stop="52637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51731" g_stop="52337" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E709140" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51731" e_stop="52337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGAC</genome_strand>
        <mrna_strand>CGATTCAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACCTCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304777" ref_strand="+" ref_description="SGN-E304777 [cLEX-10-A9]">
      <seq>aacctatcactccccggcgatgggttcgatgttctaccccaaaacgggcttgaacttgcttgccccggcgttgctcttgctccgacattctcgccgcctgccggaatctcgtgtcaaaccggaggcccgttatccagttaatttgggccgtaaagattcttttacttctaaagcttcgttggttgaaggaaatctgccccgacccacaatgtcgatggatcaaatcatacaaattttcgggtcaagagggttttcggtaccggaaatggtagcgttatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51568" stop="52637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51868" g_stop="52337" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E304777" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51868" e_stop="52337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGAC</genome_strand>
        <mrna_strand>AACCTATCACTCCCCGGCGATGGGTTCGATGT--TC-TAC-C-CCAAAACGG-GCTTGAACTTGCTTGCCCCGGCGTTG-CTCTTGCTCCGACATTCTCGCCG-C-CTG-CCGGAATCTCG-TG-TCAAACCGGAGGCCCG--TTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E690734" ref_strand="+" ref_description="SGN-E690734 [LH_Ea04E12]">
      <seq>tgttgaagggaatctgccccgacccacaatgtcgatggatcaaatcattaaaattttcgggtcaagagggttttcggtaccggaaatggtagcattatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaacaatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaacatgtattaccagaacttacctaagggtttgggtctgttgtcttcggaccggggtctgttttcagatccgaggacaagagctcatgttgaagagtatattagagatcaaaatgcattctttaaggcgtttgcttcagcaatgcagaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactacttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcacttacaagacgaaagtaaaacttataatatgtatacaatgttttttatttagattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51763" stop="53000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52062" g_stop="52702" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="641" r_length="641" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E690734" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52062" e_stop="52702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATT</genome_strand>
        <mrna_strand>TGTTGAAGGGAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATTAAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCATTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAACAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCTAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGCTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTACTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTTACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTATTTAGATTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E694574" ref_strand="+" ref_description="SGN-E694574 [LH_Ea04E12](-)">
      <seq>gttgaagggaatctgccccgacccacaatgtcgatggatcaaatcattaaaattttcgggtcaagagggttttcggtaccggaaatggtagcattatccggtgctcacacaattgggttttcccattgtaaagagttcagctcaaatctttacaattacaacaaaacttcccaatatgatccttcttacaatcccagatttgctcaagctttgagaaatgcttgtaacaatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaacatgtattaccagaacttacctaagggtttgggtctgttgtcttcggaccggggtctgttttcagatccgaggacaagagctcatgttgaagagtatattagagatcaaaatgcattctttaaggcgtttgcttcagcaatgcagaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactacttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcacttacaagacgaaagtaaaacataataatatgtatacaatgttttttattagattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51763" stop="52985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52063" g_stop="52707" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E694574" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52063" e_stop="52707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAAC-TTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAG</genome_strand>
        <mrna_strand>GTTGAAGGGAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATTAAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCATTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAACAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCTAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGCTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTACTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTTACAAGACGAAAGTAAAACATAATAATATGTATACAATGTTTTTTATTA-GATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220883" ref_strand="+" ref_description="SGN-E220883 [cLEL-22-N13](-)">
      <seq>cccagatttgctcaagctttgagaaatgcttgtaataatttccagaaagatccaacattgtccgttttcaacgacatcatgactccgaataagtttgacaacatgtattaccagaacttacccaagggtttgggtctgttgtcttcggaccggggtctgttttcagatccgaggacaagagttcatgttgaagagtatattagagatcaaaatgcattctttaaggcgtttgcttcagcaatgcagaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactatttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcactcacaagacgaaagtaaaacttataataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="51955" stop="52964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52255" g_stop="52663" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="427"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E220883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52255" e_stop="52663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAAT</genome_strand>
        <mrna_strand>CCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349598" ref_strand="+" ref_description="SGN-E349598 [cTOS-1-B24]">
      <seq>agaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactatttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcactcacaagacgaaagtaaaacttataatatgtatacaatgttttttactatcatttttattaagattacaaggctctgcttcagttctgcttttagaacaactactactactactacttgtgattagtgtgtgttgagatgcaggtaagaggctgtttgttcgtcgaatttgattcaataagaaatgaaaccgtaaataaagtttgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="52199" stop="53144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52499" g_stop="52836" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="356"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E349598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52499" e_stop="52836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</genome_strand>
        <mrna_strand>AGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E351915" ref_strand="+" ref_description="SGN-E351915 [cTOS-8-N21]">
      <seq>agaagctaagtgatcatggtgttaaaattgggagaagtggtgagatcagacacagatgtgatgctttcaacaattaaactatttgaggggtattgattatgttactgtacgttcgaattttttgttgaatttaatcactcacaagacgaaagtaaaacttataatatgtatacaatgttttttactatcatttttattaagattacaaggctctgcttcagttctgcttttagaacaactactactactactacttgtgattagtgtgtgttgagatgcaggtaagaggctgtttgttcgtcgaatttgattcaataagaaatgaaaccgtaaataaagtttgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="52199" stop="53144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52499" g_stop="52836" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="356"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E351915" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52499" e_stop="52836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</genome_strand>
        <mrna_strand>AGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241773" ref_strand="+" ref_description="SGN-E241773 [cLEE-10-G7]">
      <seq>agattgtgtcaatggtacactctcttcattcttgctttcactgtttgagcatcaagatgctcaaaaatgaaaaacaactctggagttcattgcatttgctctgcagcaatgtttattgcaatgcagaccttaaagaaacatgagaataacaattctctaacaacttccgcagttgcagcaatcaatcaactccagcataaataccaaattactagacagcggcttgtggaagccacgaacagtgcatagaataagcctcaggcacacaagaaagtgaaaatcgcattgcttgaagagtattaggagacaatgagttcatgttaaagacagcctcttttctccaaaaactaaaacacactgttcagaatctttctttacacctccaacattatttaccatgtcaactgtcacatgacctcagaagacacgacgagcaaaaccaaaaccaaaatcatgctatccgaagctatgcaaagagaaaaccgtgcctaattacaagccatttctcagaaaaaggaatgaaatagcatacagtgaagaaacagaaacaaacaagagctatgaagaacttatccgtgcttgactgatatcatcatccgaattaagcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="53489" stop="54698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53789" g_stop="54398" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E241773" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53789" e_stop="54398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTGTCAATGGTACACTCTCTTCATTCTTGCTTTCACTGTTTGAGCATCAAGATGCTCAAAAATGAAAAACAACTCTGGAGTTCATTGCATTTGCTCTGCAGCAATGTTTATTGCAATGCAGACCTTAAAGAAACATGAGAATAACAATTCTCTAACAACTTCCGCAGTTGCAGCAATCAATCAACTCCAGCATAAATACCAAATTACTAGACAGCGGCTTGTGGAAGCCACGAACAGTGCATAGAATAAGCCTCAGGCACACAAGAAAGTGAAAATAGCATTGCTTGAAGAGTATTAGGAGACAATGAGTTCATGTTAAAGACAGCCTCTTTTCTCCAAAAACTAAAACACACTGTTCAGAATCTTTCTTTACACCTCCAACATTATTTACCATGTCAACTGTCACATGACCTCAGAAGACACGACGAGCAAAACCAAAACCAAAATCATGCTATCCGAAGCTATGCAAAGAGAAAACCGTGCCTAATTACAAGCCATTTCTCAGAAAAAGGAATGAAATAGCATACAGTGAAGAAACAGAAACAAACAAGAGCTATGAAGAACTTATCCGTGCTTGACTGATATCATCATCCGAATTAAGCAAC</genome_strand>
        <mrna_strand>AGATTGTGTCAATGGTACACTCTCTTCATTCTTGCTTTCACTGTTTGAGCATCAAGATGCTCAAAAATGAAAAACAACTCTGGAGTTCATTGCATTTGCTCTGCAGCAATGTTTATTGCAATGCAGACCTTAAAGAAACATGAGAATAACAATTCTCTAACAACTTCCGCAGTTGCAGCAATCAATCAACTCCAGCATAAATACCAAATTACTAGACAGCGGCTTGTGGAAGCCACGAACAGTGCATAGAATAAGCCTCAGGCACACAAGAAAGTGAAAATCGCATTGCTTGAAGAGTATTAGGAGACAATGAGTTCATGTTAAAGACAGCCTCTTTTCTCCAAAAACTAAAACACACTGTTCAGAATCTTTCTTTACACCTCCAACATTATTTACCATGTCAACTGTCACATGACCTCAGAAGACACGACGAGCAAAACCAAAACCAAAATCATGCTATCCGAAGCTATGCAAAGAGAAAACCGTGCCTAATTACAAGCCATTTCTCAGAAAAAGGAATGAAATAGCATACAGTGAAGAAACAGAAACAAACAAGAGCTATGAAGAACTTATCCGTGCTTGACTGATATCATCATCCGAATTAAGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552625" ref_strand="+" ref_description="SGN-E552625 [cTSB-4-I15]">
      <seq>gctctgcctccacttcttcatgcccttcgatctgaatcggaacgaactaggcatgattcggctctggctctatatcacctcactttagttcagagtaacagggctaaattggtgaaactcggggcggttcaggcattactaggcatggttaaaacgggtcatatgatgggtcggattctgttgatactttgtaacctggctgcgagctctgaagggagagcagcaatgcttgatgggggtgcagtggagtgttttgtatgtatgttgagaaagggagagtttgaatcggagtcgactcgtgagaattgtcttgctgcattatatggacttagtcatggtggccttaggtttaaagggttggcaaaagaggctgctgcggaagagctgttgatacaagttgaggaaatgggaagtgaaagggccaaggataaagttagaaagatattggaggttttgaggcagaaggatgaagaggaggaagttgattgggagaagttgcttaattcggatgatgatatcagtcaagcacggataagttcttcatagctcttgtttgtttctgtttcttcactgtatgctatttcattcctttttctgagaaatggcttgtaattaggcacggttttctctttgcatagcttcggatagcatgattttggttttggttttgctcgtcgtgtcttctgaggtcatgtgacagttgacatggtaaataatgttggaggtgtaaagaaagattctgaacagtgtgttttagtttttggagaaaagaggctgtctttaacatgaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="55192" stop="53803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54892" g_stop="54096" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="797" r_length="797" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E552625" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54892" e_stop="54096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATGATTTTGGTTTTGGTTTTGCTCGTCGTGTCTTCTGAGGTCATGTGACAGTTGACATGGTAAATAATGTTGGAGGTGTAAAGAAAGATTCTGAACAGTGTGTTTTAGTTTTTGGAGAAAAGAGGCTGTCTTTAACATGAACTCATTG</genome_strand>
        <mrna_strand>GCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAAGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATGATTTTGGTTTTGGTTTTGCTCGTCGTGTCTTCTGAGGTCATGTGACAGTTGACATGGTAAATAATGTTGGAGGTGTAAAGAAAGATTCTGAACAGTGTGTTTTAGTTTTTGGAGAAAAGAGGCTGTCTTTAACATGAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372038" ref_strand="+" ref_description="SGN-E372038 [TUS-30-D8](-)">
      <seq>cttttcagtttagcgttagatgatcagaacaaaactgcaattggggtattaggagctctgcctccacttcttcatgcccttcgatctgaatcggaacgaactaggcatgattcggctctggctctatatcacctcactttagttcagagtaacagggctaaattggtgaaactcggggcggttcaggcattactaggcatggttaaaacgggtcatatgatgggtcggattctgttgatactttgtaacctggctgcgagctctgaagggagagcagcaatgcttgatgggggtgcagtggagtgttttgtatgtatgttgagaaagggagagtttgaatcggagtcgactcgtgagaattgtcttgctgcattatatggacttagtcatggtggccttaggtttaaagggttggcaaaagaggctgctgcggaggagctgttgatacaagttgaggaaatgggaagtgaaagggccaaggataaagttagaaagatattggaggttttgaggcagaaggatgaagaggaggaagttgattgggagaagttgcttaattcggatgatgatatcagtcaagcacggataagttcttcatagctcttgtttgtttctgtttcttcactgtatgctatttcattcctttttctgagaaatggcttgtaattaggcacggttttctctttgcatagcttcggatagcatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="55246" stop="53940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54946" g_stop="54241" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="707" polyA_stop="716"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E372038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54946" e_stop="54241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCAGTTTAGCGTTAGATGATCAGAACAAAACTGCAATTGGGGTATTAGGAGCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATG</genome_strand>
        <mrna_strand>CTTTTCAGTTTAGCGTTAGATGATCAGAACAAAACTGCAATTGGGGTATTAGGAGCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372039" ref_strand="+" ref_description="SGN-E372039 [TUS-30-D8]">
      <seq>ctcatggctgaccctgtaatcgtttcttcaggccatacttttgagcgtcattgtgttcatgcctgcaaatcactttcttttacccctgttcttcctgatggctctgttcctgatttctctactgtgatccctaacttagctctcaagtctacaatcctcaatttttgccgttcttcttttcttgacccaccaaaacccatcaattttctcacagctgaaaatctcgttttcacattgaaggccacccgaaaaccccaagatgctacaagatttaatggcgtccgggttatgcagacggaaactgaactgaaccgggtaccgagtcacatatcaatgagttcagaggaatctgtgactcctagaagtggacccacttattactcttcgtcgtcagcctctgactttgaaaccctaaacccaaattcctttgaagaagatgaactacttgtgaaattgaagagttcccaaatatctgaacaagaagaagctgtcatctcgtttcgaaaattgacccgaacccgtgaagaaacccggttccagttatgcactccgcgtatactttcagctctacgtgtactcatcacttcaaggtatgtttctgtacaagtaaattcagtagcggcattggtaaatttgtcgttagagaatcgaaacaaggtgaaaatttttacggtctggaattgttccgtcctttattgacgtgttgaaaagtggattccaagaatcacaggaacatgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="55993" stop="54653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55693" g_stop="54953" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E372039" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55693" e_stop="54953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAA-TTTTACGGTCTGGAATTGTTCCGTCTTTGATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</genome_strand>
        <mrna_strand>CTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAATTTTTACGGTCTGGAATTGTTCCGTCCTTTATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282921" ref_strand="+" ref_description="SGN-E282921 [cLER-17-A11]">
      <seq>ctcatggctgaccctgtaatcgtttcttcaggccatactttggagcgtcattgtgttcatgcctgcaaatcactttcttttacccctgttcttcctgatggctctgttcctgatttctctactgtgatccctaacttagctctcaagtctacaatcctcaatttttgccgttcttcttttcttgacccaccaaaacccatcaattttctcacagctgaaaatctcgttttcacattgaaggccacccgaaaaccccaagatgctacaagatttaatggcgtccgggttatgcagacggaaactgaactgaaccgggtaccgagtcacatatcaatgagttcagaggaatctgtgactcctagaagtggacccacttattactcttcgtcgtcagcctctgactttgaaaccctaaacccaaattcctttgaagaagatgaactacttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="55993" stop="54944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55693" g_stop="55244" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E282921" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55693" e_stop="55244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTG</genome_strand>
        <mrna_strand>CTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTGGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313783" ref_strand="+" ref_description="SGN-E313783 [cTOA-17-F20]">
      <seq>gaagatgtacacttttgctcatctcctcaacaggctcaaagttgaatttttgaaaccttttgttttcattcatatttgaacctcaaagattgaatcttgaaacttctttttttttttcttcattgaaatgggtactagcaagcaaagatggagaatttcatttcacaagtctccatcaaaacaacctcctattcctatagaatttgtctgtcctatttctggttctctcatggctgaccctgtaatcgtttcttcaggccatacttttgagcgtcattgtgttcatgcctgcaaatcactttcttttacccctgttcttcctgatggctctgttcctgatttctctactgtgatccctaacttagctctcaagtctacaatcctcaatttttgccgttcttcttttcttgacccaccaaaacccatcaattttctcacagctgaaaatctcgttttcacattgaaggccacccgaaaaccccaagatgctacaagatttaatggcgtccgggttatgcagacggaaactgaactgaaccgggtaccgagtcacatatcaatgagttcagaggaatctgtgactcctagaagtggacccacttattactctttgtcgtcagcctctgactttgaaaccctaaacccaaattcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="56219" stop="54966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55919" g_stop="55266" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E313783" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55919" e_stop="55266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTT</genome_strand>
        <mrna_strand>GAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTTGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E376924" ref_strand="+" ref_description="SGN-E376924 [TUS-20-A17]">
      <seq>aagaacaaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttattgaaaacaatgttgttctatttttcaatttctccctcccttctatgataaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="60849" stop="62254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61149" g_stop="61280" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61281" i_stop="61386" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61387" g_stop="61954" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="701" r_length="569" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E376924" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61149" e_stop="61280"/>
          <exon e_start="61387" e_stop="61954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTA-TTTTCAATTTCTCCCTCCCTTCTATGATAAAACA</genome_strand>
        <mrna_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATTGAAAACAATGTTGTTCTATTTTTCAATTTCTCCCTCCCTTCTATGATAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243682" ref_strand="+" ref_description="SGN-E243682 [cLED-34-N12]">
      <seq>aagaacaaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="60849" stop="62128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61149" g_stop="61280" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61281" i_stop="61386" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61387" g_stop="61828" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="574" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E243682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61149" e_stop="61280"/>
          <exon e_start="61387" e_stop="61828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACC</genome_strand>
        <mrna_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233035" ref_strand="+" ref_description="SGN-E233035 [cLED-6-E7]">
      <seq>aagaacaaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="60849" stop="62091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61149" g_stop="61280" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61281" i_stop="61386" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61387" g_stop="61791" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="537" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E233035" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61149" e_stop="61280"/>
          <exon e_start="61387" e_stop="61791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGG</genome_strand>
        <mrna_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E235987" ref_strand="+" ref_description="SGN-E235987 [cLED-16-E6]">
      <seq>aagaacaaatttacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="60849" stop="62022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61149" g_stop="61280" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61281" i_stop="61386" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61387" g_stop="61722" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="468" r_length="336" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E235987" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61149" e_stop="61280"/>
          <exon e_start="61387" e_stop="61722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAG</genome_strand>
        <mrna_strand>AAGAACAAATTTACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350594" ref_strand="+" ref_description="SGN-E350594 [cTOS-5-B24]">
      <seq>aaaaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="60855" stop="62220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61155" g_stop="61280" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61281" i_stop="61386" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61387" g_stop="61929" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="669" r_length="543" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E350594" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61155" e_stop="61280"/>
          <exon e_start="61387" e_stop="61929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATT</genome_strand>
        <mrna_strand>AAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E236208" ref_strand="+" ref_description="SGN-E236208 [cLED-20-D9]">
      <seq>aaatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgttaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgggacccctagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggatattgaccttctcaaacactagcacttgcaagatatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="60857" stop="61951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61157" g_stop="61280" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61281" i_stop="61386" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61387" g_stop="61651" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="389" r_length="265" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E236208" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61157" e_stop="61280"/>
          <exon e_start="61387" e_stop="61651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCC</genome_strand>
        <mrna_strand>AAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTTAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGGGACCCCTAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATATTGACCTTCTCAAACACTAGCACTTGCAAGATATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E280975" ref_strand="+" ref_description="SGN-E280975 [cLER-7-A18]">
      <seq>aatacacgaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="60858" stop="62020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61158" g_stop="61280" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61281" i_stop="61386" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61387" g_stop="61720" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="457" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E280975" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61158" e_stop="61280"/>
          <exon e_start="61387" e_stop="61720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCAC</genome_strand>
        <mrna_strand>AATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244571" ref_strand="+" ref_description="SGN-E244571 [cLED-38-H11]">
      <seq>gaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="60865" stop="62023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61165" g_stop="61280" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61281" i_stop="61386" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61387" g_stop="61723" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="453" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E244571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61165" e_stop="61280"/>
          <exon e_start="61387" e_stop="61723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGC</genome_strand>
        <mrna_strand>GAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241273" ref_strand="+" ref_description="SGN-E241273 [cLED-26-F17]">
      <seq>gaaagaagaaaatggaaggaggaacagaagcctatccagatttaggtagacattgccaactatctgattgccatcaactcgattttctcccttttacctgccatgcctgtttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="60865" stop="61960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61165" g_stop="61280" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61281" i_stop="61386" i_length="106">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61387" g_stop="61660" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="390" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E241273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61165" e_stop="61280"/>
          <exon e_start="61387" e_stop="61660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAG</genome_strand>
        <mrna_strand>GAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E228358" ref_strand="+" ref_description="SGN-E228358 [cLED-3-B15]">
      <seq>ttaaaggtattttgtgtggaacatagatcatgcaagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctattctcaattgctccctcccttctatgataaaacaacgaatttaagaatgacatatcaattcggaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="61085" stop="62293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61275" g_stop="61280" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61281" i_stop="61386" i_length="106">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61387" g_stop="61997" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="617" r_length="611" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E228358" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61275" e_stop="61280"/>
          <exon e_start="61387" e_stop="61997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGGTTTGCCACTTTTATCCGTCCACCTTCACTTTGCGATTTTGCTTTTGGACATACACTACTGTATAAAATATTCAAAGGTTTTGATAATCATTGTTGCGATGTGCAGGTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATTTCTCCCTCCCTTCTATGATAAAACAACGAATTTAAGAATGACATAACAATTCGGAATCATATAATCTT</genome_strand>
        <mrna_strand>TTAAAG..........................................................................................................GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTCTCAATTGCTCCCTCCCTTCTATGATAAAACAACGAATTTAAGAATGACATATCAATTCGGAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283504" ref_strand="+" ref_description="SGN-E283504 [cLER-12-I7]">
      <seq>tttttttgaaaatagaacaacattgttttccataaaataatgtaattacaaaagacaaatgaatagtaatgtgctgtgaaacgatcaacaagctttcacagaagggttcgcagggcttggagatgaggcacgacttttattcccacaatctttcccattccttgcaagcaaagcagtcaaaaacttgttattgggttcctttagcaacagctgtgatgatgaagaagtggggttacaggcgtgatcagcagggaacctgtgtctgaggcaaacttgaatccggcatatcttgcaagtgctagtgtttgagaaggtcaaaatccccttgcatcttttgacaggacaggtaggtttcttcttcttcttcttagggtcacaatccccagattcctcgtgtttttgtaatattgctttgtggtcttcaactttacagccggtagtttccatggacatagaacaaatttcgcaaaccaaaacgattcggctgttaaagtcagattttgggcattcatgagacttgcatgatctatgttccacacaaaatacctttaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="62227" stop="61080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61932" g_stop="61378" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E283504" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61932" e_stop="61378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTGAAAATAGAACAACATTGTTTTCCATAAAATAATGTAATTACAAAAGACAAATGAATAGTAATGTGCTGTGAAACGATCAACAAGCTTTCACAGAAGGGTTCGCAGGGCTTGGAGATGAGGCACGACTTTTATTCCCACAATCTTTCCCATTCCTTGCAAGCAAAGCAGTCAAAAACTTGTTATTGGGTTCCTTTAGCAACAGCTGTGATGATGAAGAAGTGGGGTTACAGGCGTGATCAGCAGGGAACCTGTGTCTGAGGCAAACTTGAATCCGGCATATCTTGCAAGTGCTAGTGTTTGAGAAGGTCAAAATCCCCTTGCATCTTTTGACAGGACAGGTAGGTTTCTTCTTCTTCTTCTTAGGGTCACAATCCCCAGATTCCTCGTGTTTTTGTAATATTGCTTTGTGGTCTTCAACTTTACAGCCGGTAGTTTCCATGGACATAGAACAAATTTCGCAAACCAAAACGATTCGGCTGTTAAAGTCAGATTTTGGGCATTCATGAGACTTGCATGATCTATGTTCCACACAAAATACCTGCACATC</genome_strand>
        <mrna_strand>TTTTTTTGAAAATAGAACAACATTGTTTTCCATAAAATAATGTAATTACAAAAGACAAATGAATAGTAATGTGCTGTGAAACGATCAACAAGCTTTCACAGAAGGGTTCGCAGGGCTTGGAGATGAGGCACGACTTTTATTCCCACAATCTTTCCCATTCCTTGCAAGCAAAGCAGTCAAAAACTTGTTATTGGGTTCCTTTAGCAACAGCTGTGATGATGAAGAAGTGGGGTTACAGGCGTGATCAGCAGGGAACCTGTGTCTGAGGCAAACTTGAATCCGGCATATCTTGCAAGTGCTAGTGTTTGAGAAGGTCAAAATCCCCTTGCATCTTTTGACAGGACAGGTAGGTTTCTTCTTCTTCTTCTTAGGGTCACAATCCCCAGATTCCTCGTGTTTTTGTAATATTGCTTTGTGGTCTTCAACTTTACAGCCGGTAGTTTCCATGGACATAGAACAAATTTCGCAAACCAAAACGATTCGGCTGTTAAAGTCAGATTTTGGGCATTCATGAGACTTGCATGATCTATGTTCCACACAAAATACCTTTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E355434" ref_strand="+" ref_description="SGN-E355434 [cTOS-25-K8]">
      <seq>caagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="61113" stop="62220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61413" g_stop="61929" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E355434" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61413" e_stop="61929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATT</genome_strand>
        <mrna_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349062" ref_strand="+" ref_description="SGN-E349062 [cTOS-2-C18]">
      <seq>caagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="61113" stop="62220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61413" g_stop="61919" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="519"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E349062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61413" e_stop="61919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCT</genome_strand>
        <mrna_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352231" ref_strand="+" ref_description="SGN-E352231 [cTOS-13-N1]">
      <seq>caagtctcatgaatgcccaaaatctgactttaacagccgaatcgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctccaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="61113" stop="62220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61413" g_stop="61919" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="508" polyA_stop="519"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E352231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61413" e_stop="61919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCT</genome_strand>
        <mrna_strand>CAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298779" ref_strand="+" ref_description="SGN-E298779 [cLET-44-K9]">
      <seq>cgttttggtttgcgaaatttgttctatgtccatggaaactaccggctgtaaagttgaagaccacaaagcaatattacaaaaacacgaggaatctggggattgtgaccctaagaagaagaagaagaaacctacctgtcctgtcaaaagatgcaaggggattttgaccttctcaaacactagcacttgcaagatatgccggattcaagtttgcctcagacacaggttccctgctgatcacgcctgtaaccccacttcttcatcatcacagctgttgctaaaggaacccaataacaagtttttgactgctttgcttgcaaggaatgggaaagattgtgggaataaaagtcgtgcctcatctgcaagccctgcgaacccttctgtgaaagcttgttgatcgtttcacagcacattactattcatttgtcttttgtaattacattattttatggaaaacaatgttgatctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="61155" stop="62220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61455" g_stop="61929" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E298779" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61455" e_stop="61929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATT</genome_strand>
        <mrna_strand>CGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTGCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGATCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E544442" ref_strand="+" ref_description="SGN-E544442 [TUS-66-M11](-)">
      <seq>aaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctgatcaacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaaggaattggggataccaatgggacccaggaagaagattctcttggctatgctttcccaaacttagaagacctgtgtagtatggtagttatatttattcaattcaatgctcctgtttctaagctgaagttatcaagctggctgttcttgggaaatgtatataaagggtagcggtataatgctggagtatttggctgatatttgttgtataatagacagtatataacagtgaaattatctctttcgtttttgggagaggctgatctttttgtgaatttattttagagaactgttcaacatgagatgcggtttgaagttattcatatagagaagattatatgattccgaattgttatgtcattctaaaaaaaaaaaaaaaaaaaaaaactcgagggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="65153" stop="61660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64853" g_stop="64649" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64648" i_stop="63826" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63825" g_stop="63745" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="286" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63744" i_stop="62609" i_length="1136">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62608" g_stop="62546" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="349" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62545" i_stop="62306" i_length="240">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62305" g_stop="61961" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="694" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="715"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E544442" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64853" e_stop="64649"/>
          <exon e_start="63825" e_stop="63745"/>
          <exon e_start="62608" e_stop="62546"/>
          <exon e_start="62305" e_stop="61961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</genome_strand>
        <mrna_strand>AAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG................................................................................................................................................................................................................................................GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374382" ref_strand="+" ref_description="SGN-E374382 [TUS-33-J22](-)">
      <seq>ttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctgatcaacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaaggaattggggataccaatgggacccaggaagaagattctcttggctatgctttcccaaacttagaagacctgtgtagtatggtagttatatttattcaattcaatgctcctgtttctaagctgaagttatcaagctggctgttcttgggaaatgtatataaagggtagcggtataatgctggagtatttggctgatatttgttgtataatagacagtatataacagtgaaattatctctttcgtttttgggagaggctgatctttttgtgaatttattttagagaactgttcaacatgagatgcggtttgaagttattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="65208" stop="61696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64908" g_stop="64649" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64648" i_stop="63826" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63825" g_stop="63745" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="341" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63744" i_stop="62609" i_length="1136">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62608" g_stop="62546" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="404" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62545" i_stop="62306" i_length="240">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62305" g_stop="61996" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="714" r_length="310" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E374382" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64908" e_stop="64649"/>
          <exon e_start="63825" e_stop="63745"/>
          <exon e_start="62608" e_stop="62546"/>
          <exon e_start="62305" e_stop="61996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAA</genome_strand>
        <mrna_strand>TTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG................................................................................................................................................................................................................................................GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374383" ref_strand="+" ref_description="SGN-E374383 [TUS-33-J22]">
      <seq>taaaggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctagtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctgatcaacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttcaagccgaggaggtagacatggctgcactgaagcaaatgggggaccgtgacctgaangaattggggataccaatgggaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="65456" stop="62242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65156" g_stop="64649" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64648" i_stop="63826" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63825" g_stop="63745" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="589" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63744" i_stop="62609" i_length="1136">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62608" g_stop="62546" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="652" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62545" i_stop="62306" i_length="240">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62305" g_stop="62300" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="658" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E374383" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65156" e_stop="64649"/>
          <exon e_start="63825" e_stop="63745"/>
          <exon e_start="62608" e_stop="62546"/>
          <exon e_start="62305" e_stop="62300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAGGATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATGGTACGTGTTGTTTCAGTCACCTTATTTGGAGGATCACACTGTTCACAAATTCTACTGCAAGTTCATATATGCTAATTTTGCTATGCATGGTGACACCTATTCACTTCCCTGAAAATAATGGGATATTATCTCGTTGGGGTGGGAAGAAGGCTAAGCTTCTCTTGATTATACTGAACTGTTGGATAGTTGCTACGCTTGTCCCATTTTAGCCTCTAATTGTTGCATTCTGGGGATTTGCAGGGACCC</genome_strand>
        <mrna_strand>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTAGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAANGAATTGGGGATACCAATG................................................................................................................................................................................................................................................GGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726390" ref_strand="+" ref_description="SGN-E726390 [LA11CG02]">
      <seq>ccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggtgccaggaatccattgacaggtcttccctctgcaaatggaggcatgctacacagaccatatcctngatcacctcctttgaccgttgccagtctattaaattcgctcggtttggggaaatacactatccactttncagccgaggagtagacatggctgcactgaaagcaatgggggaccgtgacctgaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="66086" stop="62261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65882" g_stop="65879" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65878" i_stop="65784" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65783" g_stop="65707" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="81" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65706" i_stop="65609" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65608" g_stop="65478" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="212" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65477" i_stop="65322" i_length="156">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65321" g_stop="65272" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="262" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65271" i_stop="65152" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65151" g_stop="64649" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="765" r_length="503" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64648" i_stop="63826" i_length="823">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63825" g_stop="63745" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="845" r_length="80" r_score="0.926"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63744" i_stop="62609" i_length="1136">
            <donor d_prob="0.971" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="62608" g_stop="62561" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="846" r_stop="893" r_length="48" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E726390" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65882" e_stop="65879"/>
          <exon e_start="65783" e_stop="65707"/>
          <exon e_start="65608" e_stop="65478"/>
          <exon e_start="65321" e_stop="65272"/>
          <exon e_start="65151" e_stop="64649"/>
          <exon e_start="63825" e_stop="63745"/>
          <exon e_start="62608" e_stop="62561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCTGTACGAACCTACTTATTGTTCATCTTACTGAATTTCTATCTTGAATCATTGCTGGTAGAATTCTTGTCTTATCTTGAACTGGATAACTGAAGTAGGTATTTTATGTGACATTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTATTTTATGTGACACTCAAGATCATGAGCTCGGCTGTAACCTCTTTAGTTGTTCTCCTTCTGGGGAACAACACAGACAGTGTTACTTAAACTAGCAGATCAGTTTTTACTCGAGATAGTTTTTCTGGCTCTACTCCACCCTGACATGCTTCCTGCTATTTTTTGTCAAGCCAAATTGTTGCCTATATTTTCTCTGTATGCTGGACTTTAGCACTGCTTATATTTAAAATGACAGATTGCTGATGGAAGTTAAATTACTATGGCATTGTTTGACCATGTTCAAGAATTGCCTTGGTTGCTAATGCTCATTGGAAATTTCTTTTGTCTGCGTTGTTTTACTATTATCTGTGTGATTTTCCTACAATTTTTTCTATTTCTCCTTCCTGCAACATAGCATTCTTTGCATTCCTTTGAATGATATTGAAATTTCAGGGAGTTATATTGAAAACTTTTATGTTTATTCATATGTCAATATTTCTGCATTGCTTGTCAACAAAGTCCAAATTAGTTGTTAGTTCTCACAATTAATGTCTTTCTCATAACACCATCTTTTCTTAGCTACTATGGATTTTTGTCTCATTTCCCTTTATGCCTGGTATGAAGGAGAAGGGAAGAAATATTTGTAAATGGACAGAATTTATATGAATATCTTAAACATTGTTCTATCTGGTGTTGTACAG-GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAGGTGAATAGTACTATTGTTAAATGATGAAGCACATGTTTTAGTTTTTATATCGTTTCTTTGTTATTACATTATCTCAGCATTATGAGCATTTTAAATATCAATTCTGGTACTGTGGCTGAAAAAGTCTCAAGGCTGAACTAGATTTCACTGCAAAAAGTAACAAGGTCATGGCATGTAGTTTCATGTTGAATAGAGAACCTTCTCGTCTTCACAATAAAAGGATTATTTTTTATGAGGAGCAAGATAAAATGGTACTTAATATTCTGCATTAAATCTTTTCTCCTGGTGTACTTGATTCCTATTGCACACATATATACAGTTAGCAGGCTGCTCATTATTTAGAGAAGTACCTTCTGTTATGTGGTGCGGTGGCGGAGGAGCCAGGAATTCAAAGAAAGTTCTTTTGCCATAGAGATTCAACAGCTCAAATATATACAAAAAAATGGTTCTTCCCTATCTACAGTGTAGTTTTTCAATGGAGGGGGTTCAATTGATTCCCCTTGCACCCTGGTGTGATGAATATGTTATGTGACAAATCTTCTAATAGTTGGTTAGATTTACGTGTTCGAACCCAAATCAATCTTTGAAGTTTCTTCGTTTGTCTGCATCACAAATTAATTATGTCACATGTTACTTATCCCATGACATTTCCTATTTAGTCCATTTGATCTACCTCTTTGTCTGTCCTCCCAACTAATCAACTTGTTAATAGATACATTACGGGCCTTTCAAATTCTTTACATAAATGTCTTTTGTTGTTTATAATGCCTCCTGAGGTATTATTTGTCACCTCGAAGCCCTTCATCTCTTCTGTTGTCCTCCTGTCTGATCATGTGCTCATCTTGGACTTCTAATATGAGATTATTACTTGTGTAAAGGATAGTAGCCTCACTGCTGTTCACAAATTGAAAGTTGCACCATTGGCCCATAACATTCTCAATCATCCTGTATTTTCCCCATCCATGTCCTTAGTGACACGGTTCAACTGAATAATCAGCCCATCTCTTTTATCTGTTTGTTCACGTGCCTCGCTTAATGTTTTTGATTAAGTGATTTAGTTAACTTTGCCAAGAACCTGAGATATCCTAGTTCAACTCCTTTCTTTAGTGATGTGATGCCTGTTTTACCCATTTCAGGTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAA</genome_strand>
        <mrna_strand>CCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NGATC-ACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTNCAGCCGAGGA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGACATGGCTGCACTGAAAGCAATGGGGGACCGTGACCTGAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305694" ref_strand="+" ref_description="SGN-E305694 [cLEX-14-P8]">
      <seq>taaaggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctagtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatgaggtcagcactgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="65456" stop="64412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65156" g_stop="64712" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E305694" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65156" e_stop="64712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGT</genome_strand>
        <mrna_strand>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTAGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729014" ref_strand="+" ref_description="SGN-E729014 [LA19CG09]">
      <seq>cttgctcgctgagttttggagtatagacatatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatgggtcatatggcaggatatgacctcatcgactcttctcagctaaaagtccttacccctgtgaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="66223" stop="64427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65923" g_stop="65879" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65878" i_stop="65784" i_length="95">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65783" g_stop="65707" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="122" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65706" i_stop="65609" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65608" g_stop="65478" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="253" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65477" i_stop="65322" i_length="156">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65321" g_stop="65272" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="303" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65271" i_stop="65152" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65151" g_stop="64727" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="728" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E729014" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65923" e_stop="65879"/>
          <exon e_start="65783" e_stop="65707"/>
          <exon e_start="65608" e_stop="65478"/>
          <exon e_start="65321" e_stop="65272"/>
          <exon e_start="65151" e_stop="64727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATG</genome_strand>
        <mrna_strand>CTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGGTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549043" ref_strand="+" ref_description="SGN-E549043 [TUS-66-M11]">
      <seq>catatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacggtaaaatcttttgtttgttgttctggttgagctaatgtaggttgtatctaatttattgttttcagaataatggaaggaatataaaaaaactatcaaagttagagtggtagttttgattttatttgatagtggaagttttgctattgtttttgcaagtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagtaaggccagccgaagcttcaagaatggttcatatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="66196" stop="64482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65896" g_stop="65879" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65878" i_stop="65784" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65783" g_stop="65707" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="95" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65706" i_stop="65609" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65608" g_stop="65272" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="432" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65271" i_stop="65152" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65151" g_stop="64782" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="802" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E549043" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65896" e_stop="65879"/>
          <exon e_start="65783" e_stop="65707"/>
          <exon e_start="65608" e_stop="65272"/>
          <exon e_start="65151" e_stop="64782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGC</genome_strand>
        <mrna_strand>CATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E211794" ref_strand="+" ref_description="SGN-E211794 [cLEC-66-D15]">
      <seq>ataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaagaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctgcagaacaatctcacaagaggcttgtcaccagcagccaaccgtcgtcaggagctagcgaattgcttcagatagaggcaattagatcctcctatacatcacaaactgctgctggtgttagatcaagatccccttatagacttgcaaacgattctaaagaagtctcttcttcaaggaatatcactgcagctcagcatgtaccgtcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="66086" stop="64518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65886" g_stop="65879" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65878" i_stop="65784" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65783" g_stop="65707" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="85" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65706" i_stop="65609" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65608" g_stop="65478" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="216" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65477" i_stop="65322" i_length="156">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.874" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65321" g_stop="65272" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="266" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65271" i_stop="65152" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65151" g_stop="64818" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="600" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E211794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65886" e_stop="65879"/>
          <exon e_start="65783" e_stop="65707"/>
          <exon e_start="65608" e_stop="65478"/>
          <exon e_start="65321" e_stop="65272"/>
          <exon e_start="65151" e_stop="64818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGT</genome_strand>
        <mrna_strand>ATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG............................................................................................................................................................TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E308087" ref_strand="+" ref_description="SGN-E308087 [cLEY-14-N14]">
      <seq>atatggagtataaccagatttagctgtgcataagttttgaccatctcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacggtaaaatcttttgtttgttgttctggttgagctaatgtaggttgtatctaatttattgttttcagaataatggaaggaatataaaaaaactatcaaagttagagtggtagttttgattttatttgatagtggaagttttgctattgtttttgcaagtgtgcgaggggataaagatgcaggaggttccagatatggcagacagaatggtgcacgcattgggaaaaatgacctccgactgaaactaatgcacagaagaaggcaaagggaaattcatctgcagattgaaaaaagaaaaaaggagcagcataagaggatgacaagaagtgttcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="66086" stop="64723"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65895" g_stop="65879" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65878" i_stop="65784" i_length="95">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65783" g_stop="65707" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="94" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65706" i_stop="65609" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65608" g_stop="65272" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="431" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65271" i_stop="65152" i_length="120">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65151" g_stop="65023" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="560" r_length="129" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E308087" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65895" e_stop="65879"/>
          <exon e_start="65783" e_stop="65707"/>
          <exon e_start="65608" e_stop="65272"/>
          <exon e_start="65151" e_stop="65023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGAGTATAACCAGGTAGGTATCTCATTCTCTTTCACCTCCCATTTTTTAGGGTTCCTTCATTTCTATTGACTATCGATTGTTGCATCTTGTTGCTGCAATCCTTTCAGATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATGGTATTATCTGAAATATTTGTCATTACATGTTGTTTTGTTTTTTGGATGATTCCAGTTTCCTGTGTCATTCTTTGGTCTAGCATATTAGCTCATGTTTGGTACTGTTACTGTGATGTAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTG</genome_strand>
        <mrna_strand>ATATGGAGTATAACCAG...............................................................................................ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG........................................................................................................................GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAAAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310348" ref_strand="+" ref_description="SGN-E310348 [cTOA-1-C12]">
      <seq>tcaaatgtcaaggccacaggtcaccatcactttgggacgctcgggtcaaaaagtggttaagcgatcatcagcttctcagggtaatggttttagtcaacagacattgtcaagaggcaaaaggtcattaggagagacctataggactgactctgaggatcctacaaaatcccttcgtaaacgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="66055" stop="65178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65755" g_stop="65707" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65706" i_stop="65609" i_length="98">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65608" g_stop="65478" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="180" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E310348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65755" e_stop="65707"/>
          <exon e_start="65608" e_stop="65478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAAGTAAGCTTTCTCCACTGTTTTTCGCTTTATGGATCTGTTTGGAGGTTTCTTAATTGTGGGTTCAATTTTTTCTTAATTTGTTACTGTTAAACTTGCAGAAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG</genome_strand>
        <mrna_strand>TCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA..................................................................................................AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728281" ref_strand="+" ref_description="SGN-E728281 [LA17BB12]">
      <seq>gttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaagctgctttgtgaagttcatcccagtcgtctgacgtgttataatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73429" stop="67517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73129" g_stop="72930" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="313" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="363" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="435" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="496" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="67818" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="891" r_length="395" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="892" polyA_stop="904"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E728281" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>894</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73129" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="67818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</genome_strand>
        <mrna_strand>GTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCC-AAAGCTGCTTTGTGAAGTTC-ATCCCAGTCGTCTGACGTGTT-ATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227523" ref_strand="+" ref_description="SGN-E227523 [cLEL-30-B21](-)">
      <seq>ttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttgtgaagttcaatcccagtcgtctgacgtgttaataatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="68519" stop="67517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68442" g_stop="68426" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68215" g_stop="67818" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="415" r_length="398" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="430"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E227523" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68442" e_stop="68426"/>
          <exon e_start="68215" e_stop="67818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</genome_strand>
        <mrna_strand>TTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E227310" ref_strand="+" ref_description="SGN-E227310 [cLEL-30-B21](-)">
      <seq>gaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttgtgaagttcaatcccagtcgtctgacgtgttaataatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="68445" stop="67517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68145" g_stop="67818" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="343"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E227310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68145" e_stop="67818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</genome_strand>
        <mrna_strand>GAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726468" ref_strand="+" ref_description="SGN-E726468 [LA11DF03]">
      <seq>cgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattangggattttgggtggcttcagcttcagctaatgcaaatctgattttgtataaaactggaatcaatttccaaagctgctttgtgaagttcaatcccagtcgtctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73454" stop="67533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73154" g_stop="72930" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="338" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="388" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="460" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="521" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="67833" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="902" r_length="381" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E726468" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>904</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73154" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="67833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGA</genome_strand>
        <mrna_strand>CGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTANGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAAT-CTGATTTTGTATAAAACTGGAATCAATTTCC-AAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733461" ref_strand="+" ref_description="SGN-E733461 [LB10AC11]">
      <seq>ggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaaatcatttccaaagctgctttgtgaagntcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73421" stop="67547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73121" g_stop="72930" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="305" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="355" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="427" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="488" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="67848" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="855" r_length="367" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="856" polyA_stop="872"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E733461" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73121" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="67848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCA</genome_strand>
        <mrna_strand>GGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAAATCATTTCC-AAAGCTGCTTTGTGAAGNTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555128" ref_strand="+" ref_description="SGN-E555128 [cTSC-6-I10]">
      <seq>ttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttgtgaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73291" stop="67549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72991" g_stop="72930" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="175" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="225" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="297" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="358" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="67849" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="725" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E555128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72991" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="67849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTC</genome_strand>
        <mrna_strand>TTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370216" ref_strand="+" ref_description="SGN-E370216 [TUS-28-C10](-)">
      <seq>cttcttctactcatcgctgcctcaccgtagccaaaatggagccatcaaagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaactggaatcaatttccaaaagctgctttaaaaattcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73265" stop="67558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72965" g_stop="72930" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="149" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="199" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="271" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="332" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="67858" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="690" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="711"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E370216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72965" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="67858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTT</genome_strand>
        <mrna_strand>CTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAAAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350998" ref_strand="+" ref_description="SGN-E350998 [cTOS-6-G3]">
      <seq>ttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactggtgtgtgatgcatctagattgtatgagtcataactcatattangggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73285" stop="67585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72985" g_stop="72930" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="169" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="219" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="291" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="352" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="67877" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="691" r_length="339" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E350998" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72985" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="67877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATC</genome_strand>
        <mrna_strand>TTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGGTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTANGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348512" ref_strand="+" ref_description="SGN-E348512 [cTOF-30-F15]">
      <seq>aagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattaggggattttgggtggcttcagcttcagctaatgcaaatcctgattttgtataaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="68519" stop="67585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68433" g_stop="68426" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68215" g_stop="67885" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="339" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="360"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E348512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68433" e_stop="68426"/>
          <exon e_start="68215" e_stop="67885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAA</genome_strand>
        <mrna_strand>AAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288600" ref_strand="+" ref_description="SGN-E288600 [cLES-8-L16]">
      <seq>tttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgattctgatctcgtctagtgagattgggtgggtgaataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataactcatattangggattttgggtggcttcagcttcagctaatgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="69685" stop="67603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69385" g_stop="69338" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="120" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="181" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68215" g_stop="67903" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="494" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E288600" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69385" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="67903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAA</genome_strand>
        <mrna_strand>TTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTANGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327442" ref_strand="+" ref_description="SGN-E327442 [cTOC-19-F7]">
      <seq>tcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaacccatccattacattgttgtgattctgatctcgtctagtgagattgggtggggtgataacagtgcaattatgctaactgttgtgtgatgcatctagattgtatgagtcataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73410" stop="67647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73110" g_stop="72930" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="294" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="344" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="416" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="477" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="67947" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="745" r_length="268" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E327442" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73110" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="67947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACT</genome_strand>
        <mrna_strand>TCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAA-CCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGGTGATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347108" ref_strand="+" ref_description="SGN-E347108 [cTOF-25-N2]">
      <seq>aacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaacccatccattacattgttgtgattctgatcttcgctagtgagattgggtgggtgaataacagtgcaattatgcttaactggtggtgatgcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73417" stop="67667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73117" g_stop="72930" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="301" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="351" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="423" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="484" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="67967" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="733" r_length="249" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E347108" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73117" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="67967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGC-TAACTGTTGTGTGATGCATCT</genome_strand>
        <mrna_strand>AACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAAACCCATCCATTACATTGTTGTGATTCTGATCTTCGCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTTAACTGGTG-GTGATGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290759" ref_strand="+" ref_description="SGN-E290759 [cLET-10-N11]">
      <seq>ttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgggattctgatctcgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73419" stop="67725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73119" g_stop="72930" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="303" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="353" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="425" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="486" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="68025" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="677" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E290759" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73119" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCT</genome_strand>
        <mrna_strand>TTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGGGATTCTGATCTCGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370217" ref_strand="+" ref_description="SGN-E370217 [TUS-28-C10]">
      <seq>acagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatccattacattgttgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73416" stop="67738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73116" g_stop="72930" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="300" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="350" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="422" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="483" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="68038" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="661" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E370217" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73116" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGAT</genome_strand>
        <mrna_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697126" ref_strand="+" ref_description="SGN-E697126 [LH_Ea10O20](-)">
      <seq>gcagtatgttcgcaggtcagaaacatatttttgcatggacaaaggtgttacttttgtggtcatcaagggtttggcagagcacaaggatacattgggtggtccactttgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttttggaattgtccgtgtgtaccaatgagagagaggaaggagtgtccctgcatgctttttttgacccctgataatgattttgctggagaagaacagccgattcctatggaggagattaaggaaacaacagccaacatgggatgttcggacattttatacatgttatgaacattacgtttttgttgtacatgtatatttgagtagtagatgaagagcaacaatccagttttgatgtgacatgttgctgaaacgccatcctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="72613" stop="67748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72313" g_stop="72247" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.718" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="117" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="189" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="250" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68215" g_stop="68054" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="412" r_length="162" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="447"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E697126" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72313" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCC</genome_strand>
        <mrna_strand>GCAGTATGTTCGCAGGTCAGAAACATATTTTTGCATGGACAAAGGTGTTACTTTTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGGTCCACTTTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTTTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCCCTGCATGCTTTTTTTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................CCGATTCCTATGGAGGAGATTAAGGAAACAACAGCCAACATGGGATGTTCGGACATTTTATACATGTTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTAGTAGATGAAGAGCAACAATCCAGTTTTGATGTGACATGTTGCTGAAACGCCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E693286" ref_strand="+" ref_description="SGN-E693286 [LH_Ea10O20]">
      <seq>gcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgttatgaacattacgtttttgttgtacatgtatatttgagtagtagatgaagagcaacaatccagttctgatgtgacatgttgctgaaaccccatcctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="72613" stop="67748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72313" g_stop="72247" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="117" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="189" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="250" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68215" g_stop="68054" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="412" r_length="162" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="445"/>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E693286" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72313" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCC</genome_strand>
        <mrna_strand>GCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGTTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTAGTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327034" ref_strand="+" ref_description="SGN-E327034 [cTOC-18-B19]">
      <seq>agaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagaagcacaatccagttctgatgtgacatgttgctgaaaccccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73414" stop="67755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73114" g_stop="72930" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="420" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="481" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="68055" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="642" r_length="161" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E327034" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73114" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATC</genome_strand>
        <mrna_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAAGCACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E722067" ref_strand="+" ref_description="SGN-E722067 [FC16AD09]">
      <seq>ggccgaattgcttttccgaagttgccttggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcaaagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcaaaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73422" stop="67773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73149" g_stop="72930" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="333" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="383" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="455" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="516" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="68070" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="662" r_length="146" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E722067" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73149" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGT</genome_strand>
        <mrna_strand>GGCCGAATTGCTTTTCCGAAGTTGCCTTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAAAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAAAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300501" ref_strand="+" ref_description="SGN-E300501 [cLET-45-J2]">
      <seq>agaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcgacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattctgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgttgttgttgcacatgtatatttgagtattagatgaagagcaacaatccagttctgatgtgacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73414" stop="67772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73114" g_stop="72930" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="420" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="481" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="68072" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="625" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E300501" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73114" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACAT</genome_strand>
        <mrna_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCGACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTCTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTGTTGTTGCACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E292908" ref_strand="+" ref_description="SGN-E292908 [cLET-11-B6]">
      <seq>agaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatttgagtattagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73378" stop="67803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73078" g_stop="72930" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="262" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="312" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="384" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="445" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="68103" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="558" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E292908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73078" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGAT</genome_strand>
        <mrna_strand>AGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270741" ref_strand="+" ref_description="SGN-E270741 [cLEM-6-D6]">
      <seq>acagaatcacatttttgactcaatcggaaagtcggagcagaagacgagacaacggagcaactactaccggaatccgccatgagaactcttcaagcttccacctactacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttgtactcatcgctgcctcaccggatccaaaatggagccatgatagaaatctgttgaaatcatgatgaaattgtaggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcatcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaacattacgtttttgttgtacatgtatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73416" stop="67815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73116" g_stop="72930" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.959" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="300" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="350" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="422" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="483" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="68115" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="584" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E270741" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73116" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATT</genome_strand>
        <mrna_strand>ACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAGACGAGACAACGGAGCAACTACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTACTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTGTACTCATCGCTGCCTCACCGGATCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATGATAGAAATCTGTTGAAATCATGATGAAATTGTAGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCATCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283989" ref_strand="+" ref_description="SGN-E283989 [cLER-13-J10]">
      <seq>agaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgctatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73414" stop="67841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73114" g_stop="72930" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="420" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="481" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="68141" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="556" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E283989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73114" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACA</genome_strand>
        <mrna_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305564" ref_strand="+" ref_description="SGN-E305564 [cLEX-14-M7]">
      <seq>tggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggaaaaaaacagactattactaggggggagattaaggaaacccccgccgacttgtgaggctcggacatcttatacatgctatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73422" stop="67843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73122" g_stop="72930" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="306" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="356" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="428" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="489" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.960" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="68143" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="562" r_length="73" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E305564" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73122" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAA</genome_strand>
        <mrna_strand>TGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAAAAAAACAG..................................................................................................................................................................................................................ACTATTACTAGGGGGGAGATTAAGGAAACCCCCGCCGACTTGTGAGGCTCGGACATCTTATACATGCTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725832" ref_strand="+" ref_description="SGN-E725832 [LA05DF10]">
      <seq>gttaacagaatcacatttttgactaaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgnatactatggaggagattaaaggaacacagccacatgtgatgctcggacatctatacatgctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73420" stop="67844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73120" g_stop="72930" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="304" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="354" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="426" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="487" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="68144" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="556" r_length="69" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E725832" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73120" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGA</genome_strand>
        <mrna_strand>GTTAACAGAATCACATTTTTGACTAAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGNATACTATGGAGGAGATTAAAGGAAC-ACAGCC-ACATGTGATGCTCGGACATC-TATACATGCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E358679" ref_strand="+" ref_description="SGN-E358679 [cLHT-22-L21]">
      <seq>gaatcacatttttgactcaatcggaaagtaggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctgacccctgataatgattttgctggagaagaacagacgattactatggaggagattaaggaaacaacagccaacatgtgatgctcggacatcttatacatgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73413" stop="67845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73113" g_stop="72930" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="297" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="347" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="419" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68426" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="480" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68215" g_stop="68145" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="551" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E358679" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73113" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68426"/>
          <exon e_start="68215" e_stop="68145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAGGTAAACCAAATGCAAATATGCGAAGCTTGATTTATAGTTACCTTCTTAGATTTGAGTATTTGGTCTATAGCCCTTTTCCTCTTTTGGCTATCTGACTCCCTAAGGGTATTGTAAAAAACAAAGGATTACTATTATATGCTGTCATTGCCTAGCGTGTGTCTTGCACTTATATCTGCTACTAAGGCGACTCTTCTGTCTTTTGTTTCACAGACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATG</genome_strand>
        <mrna_strand>GAATCACATTTTTGACTCAATCGGAAAGTAGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG..................................................................................................................................................................................................................ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288876" ref_strand="+" ref_description="SGN-E288876 [cLES-17-J20]">
      <seq>tcacatttttgactcaatcgaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaagagtgtcactgcatgctttttctgacccctgataatgattttgctggagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73410" stop="68130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73110" g_stop="72930" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="293" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="343" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="415" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68430" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="472" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E288876" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73110" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGA</genome_strand>
        <mrna_strand>TCACATTTTTGACTCAATC-GAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E337540" ref_strand="+" ref_description="SGN-E337540 [cTOE-11-P6]">
      <seq>ccgtttattaatttattttaattataatttttcttcagatattaggtgaaaagaaaaggagagaacggatagtaatatataaatatcaacgctgtacgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagaggaaggagtgtcactgcatgctttttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73550" stop="68159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73250" g_stop="72930" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="434" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="484" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="556" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68486" g_stop="68459" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="584" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E337540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73250" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
          <exon e_start="68486" e_stop="68459"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAGGTAAGCTGTTTTTGCTTGTGTTCAGAACTGGTTGTATTTTGGGCATGTCATGTCATGTTTTTTTTTTTTTGTCTTGCTGAGAGTAAAAACAGTACCAGAAATAGGGGATTCAATAAATCGAAATCAATATAAATTCTTTGTATTCTGTGATGGCATTTTTCCTCCTTTCTGTTGGAGATACTTTCTTTTAGGTTTGCCGCTAGCTTTTTGGTAAGATAAGGCTTCATTAAGTGTTTTACTTTGAGCTTTTAGGCCTTGAATATCTGAATAATAAATCTTTGTAATGCATGAGAGACAGTGGTCAGCAACTACAGTTATGGGTGCATGAATTTAAAGATAACTTGTCAGTTGCCCTTGTGTCCTTTGGTTGTTCAACATGCTAAGGTCTGAATTGTACAGAAGGGTTTGATATATTGTGGTTTCTGTTTGGATTCTGCAAAGAAAATTGTCTGCTTGACCAGAAATGGAAACCTTGACCGGAGAAGCCATTTAGTGTTTCTAGCTCAATTATGTGTGCCATCATGTATATCTGGTATCACCCTTTTAGTCTGCATTCTCTGAATCCAAGTAATCATGGATAGTAATATTTTATCATTTATAAAATCTCCAAAATAAGGCTCCGTATCTTTCTTATAAACTTGCATTACAGGAAGGAGTGTCACTGCATGCTTTTTCTG</genome_strand>
        <mrna_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGTGTCACTGCATGCTTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296618" ref_strand="+" ref_description="SGN-E296618 [cLET-39-J10]">
      <seq>attttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagcagggcttctggaattgtccgtgtgtaccaatgagagagagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73446" stop="68835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73146" g_stop="72930" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="330" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="380" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69136" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="452" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E296618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73146" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG</genome_strand>
        <mrna_strand>ATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246889" ref_strand="+" ref_description="SGN-E246889 [cLEF-41-H15]">
      <seq>agaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaagcgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73414" stop="68876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73114" g_stop="72930" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="298" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="348" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69176" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="380" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E246889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73114" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAGCGCAGC</genome_strand>
        <mrna_strand>AGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAGCGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284249" ref_strand="+" ref_description="SGN-E284249 [cLER-16-O24]">
      <seq>tttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaaaggtgttacttctgtggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatgacaaagctgcagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73403" stop="68882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73103" g_stop="72930" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="287" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="337" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69182" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="363" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E284249" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73103" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGACAAAGCTGCAGAAG</genome_strand>
        <mrna_strand>TTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGACAAAGCTGCAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336569" ref_strand="+" ref_description="SGN-E336569 [cTOE-4-O13]">
      <seq>ccgtttattaatttattttaattataatttgtcttcagatattaggtgaaaagaaaaggagagaacggatagtaatatataaatatcaacgctgtacgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcaaaaacatatttctgcatggacaaaggtgttacttcttgggtcatcaagggtttggcagagcacaaggatacattgggtgctccactctgcccctgcaggcattatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73550" stop="69035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73250" g_stop="72930" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72247" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="434" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.718" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69387" g_stop="69338" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="484" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69207" g_stop="69196" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="496" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E336569" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73250" e_stop="72930"/>
          <exon e_start="72359" e_stop="72247"/>
          <exon e_start="69387" e_stop="69338"/>
          <exon e_start="69207" e_stop="69196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAGGTACTTTCTTTTCCCTTTCTCATCTAATGATATATTGTGCATTTACTATCCACACTCATATGTTTACGTCTTTAGTATGTGTTTCAAATCATATTTTCCATTTAATCTCAAGGTTTGACACTTGATTGTTCTTTTCTATTTTACTTAATGAGAATATGTTTTAGGGATTGAATTGGGACTGGGGCCTTTCGTCTCCATGAAAGCTGTCTTCGGTAGCTTCTTAATTTTGTTTTGTATTGCCGCTATAATTTTGTGACTGCTGCATTAGCACTAAACAGAGTGGGTTATTAACTCACTATTTCAGCTCGTGGTTTCTGTGTTAGCTGGTAAGTAAGTTACTGTAAAAGTAATAACTTTAATGTTGAAAATTTACCATTTCATGCAGATATTGTTTTTATGCTGTTAAATTGACCAAAAGTCATCAGTAAGCACAGTGCAGTCAGAGTACGACAACTTATACAAATGTTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTTGAGATGGAACAGGACAGAATTCAATCCTTTCTTTGTGAAGAGGCACTGGAAGCATCAATACCAATGGGCGCACCCACATAAGGGAAAGTCTTGTGATAATGTGGAAGGTGCTCTTCTAGACTGTGTTAGGTAGTTGAGGATCCTCTTGGTGTTCTTGGTTTTGTTGGGTTACATTCCGCAATTACTTATTGATAATAGCTATTAGCTACCCACCAATAAACAACTATAATGATAACGATATGATACCAAAAACATTAGAAATAACAACCGAGGTGAATGGGAAGTTGATGCCAAAAGAACATAGGTTTTTTCCCTCAGTTTCTGCACTCCTTGCTTTAACTTTAGAACTACAGCCAGCTCAATCCATTTTTCCATCCGATGATCTTCACCCTAGGACTGACTCTGTTCAACTTCCATGAAAATGATTTTAAAGCCTTATCCACATCAAAAGTACCCTATAGAAAGAAGTGAATCTTATATGCTACTATGATAAGTATCCTATTGGGTTTTGATAGAGAATCAAACATAAGGATGTATCCAAGGGTGTGACAGAACGTGGCTTATTAGTATCTTTTATTGGTTTGATGCATAGTGATTGTAAATGGTCATTATGACTTTTCCCTTTTGATGTTGGATGCTTAGTGTCTTATGAGGTTCTCCAAATTATATTGCTGTACAAAGAATAGAGCTATCACATTTTAGAAATTTGAATCGAGAACATACTAATGGAGTTTGTGGGCTGGACATGAATGTATGTATGTTATACAAAGACTCTATCAACAACAACAACATACTTGGTGTAATCCCACAAGTGAGGTCAGGTGAGGTCAGGGGAGGGTAGTGTGTATGCAAACCTTACAAGCATTCTTAAAAGAAAAGGAACAATAGCTATAACAAATAATACTACAGTCGAAGTACAAGAAATAGCATATAGTAGTATAAATCGCCGAAGAAGAAACTACAAGTCACATGCATGCAAAGTACCAAAAGTATCCTTGTAAATGAGTAATGGTTAGAGTTACCACATATCTTTTCGTTTTAAATTAATGGCGGCGAGGGTTCCAACATGACAGAGTAAAGCGAGGATACATGGACTAAATAGTTTCTAAAAAGAGAAATGTGTCATTCTTTTTTAACAAACTAAAAAGGAAAGTGTGTTACATAATATGGGACGGAGGTAAATATGGTTTGAGTACAACCTATCTACTGTTTTAGTCAAATATACACAAATGTTACCTTCTCAAAATAAAAATATGGGACGGAGGGATTAGTCAAGTATAGGACCAAAGTTTAAGTCTAGATTCAAAGAATACTCTATGACTAATTGGCATATCCTTATCCTTGAAAAGCAGTTTTGCTACAGCAATCCGTTCAATTTTATGGGTAACTGTTTTTTTAGGTTAGGGAACTCCTTTACTTTCACAACTTATTAAGATGTTTTACTAGAAATCCATATCAGAAGCATATCACGTTTGACTGATTTATGTGCATAAGAAAGACATTCACTTTGGTGGAGCTTAGTTGATTTCTAGTTTTGTACTGCTCTTGTTATGATGTCTTAATCCCTACTCACAGTGGTTTCTATATTCCTTATTATTGAAACATCTATTCCTACAGCGAGGGCGGAATTTAATTAATGGTATTCGTTGACCTATGCTTAGGGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAGGTAAATATTCGTTCCTGACACATATGTTTTGATGGTTTTCATGCTTTGCTCCTTCCCAGTTACCGCAGTACCTTTGTAATTTCATCATTACCATGAAACTATACCATATTGTTGTCATTTTAATTTTCAGGCATTATGATGA</genome_strand>
        <mrna_strand>CCGTTTATTAATTTATTTTAATTATAATTTGTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAAAAACATATTTCTGCATGGACAAAGGTGTTACTTCTTGGGTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG..................................................................................................................................GCATTATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332128" ref_strand="+" ref_description="SGN-E332128 [cTOD-16-O24]">
      <seq>ttttgaacgttaggatactccctcctaggctataaagtgagaatttatcgtatctgcttggaaactgtattgtcgttttactaactccaagataatggcattctgtatacttgaagtttaggacaagctgcaagtgtgtgatgtcatttcagttccaaaaagttgcttctatactatagctgcttgattattgttgaatagtattttgttgctcagaagttctactttggtcttattacctcataaaaaaaaaagtgatacctttggtttagagcttgaatagccaatcactttttcccaggtatccttcactttatatttcaggtttaggtgtgtgttcgtgtatcttctagaagcatatttctatgtaagttcgtgaaagtatgaatttaaaattgtggagctgtggaaactcttgaactgaggggatatcaattatcaaagacttataatgagagataaacaatagcacaaagctaattatataataaaggacagttatacaaggaatttttaacacaaagaagggaataagaattgagaaacttttaataatgtgagtacaagatttaccatctcataaacaagatagaagaatagattttatcatctcataaacaagatagaagaatagatttatctcaagtttcagagaatgtgactgtgacggagttaatagattgctaaatacaagccaatcacaaagatcaatccnacatgctgtccttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="72081" stop="70749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71781" g_stop="71049" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="733" r_length="733" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E332128" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71781" e_stop="71049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTT</genome_strand>
        <mrna_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCNACATGCTGTCCTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332165" ref_strand="+" ref_description="SGN-E332165 [cTOD-16-L23]">
      <seq>ttttgaacgttaggatactccctcctaggctataaagtgattatttatcgtatctgcttggaaactgtattgtcgttttactaactccaagataatggcattctgtatacttgaagtttaggacaagctgcaagtgtgtgatgtcatttcagttccaaaaagttgcttctatactatagctgcttgattattgttgaatagtattttgttgctcagaagttctactttggtcttattacctcataaaaaaaaaagtgatacctttggtttagagcttgaatagccaatcactttttcccaggtatccttcactttatatttcaggtttaggtgtgtgttcgtgtatcttctagaagcatatttctatgtaagttcgtgaaagtatgaatttaaaattgtggagctgtggaaactcttgaactgaggggatatcaattatcaaagacttataatgagagataaacaatagcacaaagctaattatataataaaggacagttatacaaggaatttttaacacaaagaagggaataagaattgagaaacttttaataatgtgagtacaagatttaccatctcataaacaagatagaagaatagattttatcatctcataaacaagatagaagaatagatttatctcaagtttcagagaatgtgactgtgacggagttaatagattgctaaatacaagccaatcacaaagatcaatccaacatgctgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="72081" stop="70755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71781" g_stop="71055" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E332165" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71781" e_stop="71055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCT</genome_strand>
        <mrna_strand>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGATTATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297608" ref_strand="+" ref_description="SGN-E297608 [cLET-28-N4]">
      <seq>tgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatggacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73401" stop="71972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73101" g_stop="72930" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72272" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="260" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E297608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73101" e_stop="72930"/>
          <exon e_start="72359" e_stop="72272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAA</genome_strand>
        <mrna_strand>TGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306413" ref_strand="+" ref_description="SGN-E306413 [cLEX-13-H16]">
      <seq>atcaacgctgtacgaaagagattttttcctttccgaagttgtggtggttaacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcatcgctgcctcaccgtagccaaaatggagccatcagagaaatctgttgaaatcatgaggaaattctcggagcagtatgctcgcaggtcagaaacatatttctgcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73466" stop="71975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73166" g_stop="72930" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72359" g_stop="72275" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="322" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E306413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73166" e_stop="72930"/>
          <exon e_start="72359" e_stop="72275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAAGTAATCATTGATCAACTTCCTACAGTTTATAGATTCTTCTTCTGATTTCCTCTCAGTTGCCATATTTTTGGAAATAAAATGCTTTGAACTAGTTTGTGTTTATTGAGTTCGTGCAACTGTGAATTCTGTTTTTGTATTCAATGTTATTTCGATTTCAGTGTTTTCTCTTTTCGATTTTGAGTTGTTAGTTTGCGTATGGCGATAAGATCCTGAAATTCGATCCATGGAGACTAATTGGATGTTAAAAGCGTTTCGAGCTTTAATTTCTTCACATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGCTATAGCTCTTGAAGGCTCATTATAGTTATTTAGTCTTGAGTTTAGAGTGTATATACTGCTGTTATAGATCTTGAAGGCTCATTATAGTTACCAGGGATAAGCATCTATAGATTTATTTGTGATTTCTTCCGAGAAATGATAATAGTATTTATTCAGCTAGATCAAATATAATTGGGAAGATCAAATCAACGAAATCAGTAGAAGTTGATCTATTGATTTTACTGAAATGGCTAATTTCATGGGTGTGTTGTTTGCATATGTAGTGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGA</genome_strand>
        <mrna_strand>ATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295179" ref_strand="+" ref_description="SGN-E295179 [cLET-20-L7]">
      <seq>taacagaatcacatttttgactcaatcggaaagtcggagcagaaaacgagacaacgaagcaacaactaccggaatccgccatgagaactcttcaagcttccacctcctacagcgttggctttggaatttcatcttttgctactcgtcctaagccttcttctactcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="-" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="73418" stop="72652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73118" g_stop="72952" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="-" ref_id="SGN-E295179" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>167</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73118" e_stop="72952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCAT</genome_strand>
        <mrna_strand>TAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555478" ref_strand="+" ref_description="SGN-E555478 [cTSC-4-B17]">
      <seq>tttttcttatttttatgagaaagagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="76596" stop="79069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76896" g_stop="76998" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78086" g_stop="78769" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="789" r_length="686" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E555478" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76896" e_stop="76998"/>
          <exon e_start="78086" e_stop="78769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGG--AAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGT</genome_strand>
        <mrna_strand>TTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739436" ref_strand="+" ref_description="SGN-E739436 [LC17BG12]">
      <seq>gagggcagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="76614" stop="79181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76912" g_stop="76998" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78086" g_stop="78881" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="882" r_length="796" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E739436" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76912" e_stop="76998"/>
          <exon e_start="78086" e_stop="78881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAA</genome_strand>
        <mrna_strand>GAG-GGCAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736642" ref_strand="+" ref_description="SGN-E736642 [LC06CD03]">
      <seq>gagggagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaacccagattgaagcctccatttccagctaatgcaggactatatggatgtccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="76614" stop="79170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76914" g_stop="76998" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78086" g_stop="78870" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="869" r_length="784" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E736642" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76914" e_stop="76998"/>
          <exon e_start="78086" e_stop="78870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAAC</genome_strand>
        <mrna_strand>GAGGGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGC-AACCCAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737554" ref_strand="+" ref_description="SGN-E737554 [LC10BC05]">
      <seq>gagggagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactccataagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagaagcttgagggcaaacaaggcaaaacaagattgaagcctccatttccagctaatgcaggactatatggatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="76614" stop="79165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76914" g_stop="76998" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78086" g_stop="78866" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="866" r_length="781" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E737554" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76914" e_stop="76998"/>
          <exon e_start="78086" e_stop="78866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTC</genome_strand>
        <mrna_strand>GAGGGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTCCATAAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAAGCTTGAGGGCAAACAAGGCAAAACAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736236" ref_strand="+" ref_description="SGN-E736236 [LC04DE07]">
      <seq>gagggagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="76614" stop="79137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76914" g_stop="76998" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78086" g_stop="78837" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="837" r_length="752" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E736236" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736236" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76914" e_stop="76998"/>
          <exon e_start="78086" e_stop="78837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATT</genome_strand>
        <mrna_strand>GAGGGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736700" ref_strand="+" ref_description="SGN-E736700 [LC06DD02]">
      <seq>gaggcagagcttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="76616" stop="79107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76914" g_stop="76998" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78086" g_stop="78807" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="807" r_length="722" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E736700" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76914" e_stop="76998"/>
          <exon e_start="78086" e_stop="78807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAA</genome_strand>
        <mrna_strand>GAGGCAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339468" ref_strand="+" ref_description="SGN-E339468 [cTOF-4-H14]">
      <seq>ttcaatctcaccctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="76624" stop="78989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76924" g_stop="76998" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78086" g_stop="78689" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="679" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E339468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76924" e_stop="76998"/>
          <exon e_start="78086" e_stop="78689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTG</genome_strand>
        <mrna_strand>TTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335923" ref_strand="+" ref_description="SGN-E335923 [cTOE-6-G19]">
      <seq>tcaccctaatctgctggagaatcagctggatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgacgatcggatcttcacaaatctctacggattgcatgacccttacctcaaaagtgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="76631" stop="78622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76931" g_stop="76998" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78086" g_stop="78322" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="305" r_length="237" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E335923" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76931" e_stop="76998"/>
          <exon e_start="78086" e_stop="78322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATG</genome_strand>
        <mrna_strand>TCACCCTAATCTGCTGGAGAATCAGCTGGATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGACGATCGGATCTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAAGTGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323796" ref_strand="+" ref_description="SGN-E323796 [cTOC-5-H20]">
      <seq>cctaatctgctggagaatcagctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacacaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgnccttcatatcttgtcgtcaatgctgatgaaagtgaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="76635" stop="78818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76935" g_stop="76998" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78086" g_stop="78518" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="497" r_length="433" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E323796" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76935" e_stop="76998"/>
          <exon e_start="78086" e_stop="78518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTG</genome_strand>
        <mrna_strand>CCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACACAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGNCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332681" ref_strand="+" ref_description="SGN-E332681 [cTOD-18-N24]">
      <seq>agctgaatttcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaagctgtctgattgcangagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaaggtgagccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="76654" stop="78959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76954" g_stop="76998" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78086" g_stop="78659" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="619" r_length="574" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E332681" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76954" e_stop="76998"/>
          <exon e_start="78086" e_stop="78659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTC</genome_strand>
        <mrna_strand>AGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAAGCTGTCTGATTGCANGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAAGGTGAGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284092" ref_strand="+" ref_description="SGN-E284092 [cLER-13-B11]">
      <seq>tcgtcgattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggttcagaacaaaagatcttgtcatcaagggttctgactggatcgggaatgaaatgaagaaatctggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="76663" stop="78705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76963" g_stop="76998" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78086" g_stop="78405" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="356" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E284092" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76963" e_stop="76998"/>
          <exon e_start="78086" e_stop="78405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCGATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCT</genome_strand>
        <mrna_strand>TCGTCGATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTTCAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGGGAATGAAATGAAGAAATCTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702317" ref_strand="+" ref_description="SGN-E702317 [FA18BE11]">
      <seq>gattaatcacatttctgcttcaatattcatggcacctataaagggccttctttctctacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="76668" stop="79192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76968" g_stop="76998" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78086" g_stop="78892" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="838" r_length="807" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E702317" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76968" e_stop="76998"/>
          <exon e_start="78086" e_stop="78892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAATCACATTTCTGCTTCAATATTCATGGTAAGTCCCTATCTTCGATCTGTAATTTTTTTGCGCCACCAAAATACAAATGAAAATTTGTTGTGAGAATACGCCTTACGTGCATTTTGATGCGTCCTCGGTTTGTTCGTTGATTACTCTTTTGGTACTCTTCATAGGATATTTATTGCAAATTTATATTTTCAGAGATGTGGCTTAATTTTAACTGATTCGAATGGCCATGGTATTCCTAGAAAGATGAATGATGAGGAACCCTAAATTTTATTTGGCTAGCACATGTGGGTATTGCTTTTGATCTTTTTTGATTCCTGGATAAGTTATTCAGGAGAGGTGTTGCTTCATTGATCTGCTTTCGTTGAAAAAAAATGGGTTATTTTTTTAGATTGGAGTATGTTATAAGTTATGCAAGTTCATATTTTGAACCTAACCTCCTTATCAGAACTCTTTAATTCATAGACTCCGTAGCTTCTTTTCTTTGTTTGTGTGTGTTTTCAACTTTGTAATTTAGAATGAGTTATATGTATATAGATTAATAAGGAGTTAGTGTAGTCTTCCGCTGTACTTTGAATTAAGCTCTTTCAAGGTAAGCTTCTTTTTTCAGGGAAAGAAAACCTTCATACTCTATTACTTCGGAAGGCTTATGTATTTATTTTAGAGAGGTAGATGTAAATTAAATTAGTACCTAAACTTTGAAAACAGTTAGTTAGAGATGTTTTGCGTAAGTGTTTCCTCCCCTCCCCCACCCAGACATCAAAAGGAGGGTATTCTTTTTGTTTCTTCCCCTCTTGTGCAATTCCCTTAGCATCAGGTATTAACAATCTATTTTGGGAATAATTTTTTTGGAAATGTTACTGTTACTCTCTCGATCTTATGTTTCTATTCAATCAACTCTGCTTCGGTGAGTTTAGCAAAGTGTACCCCATCTAAAGCCTGGAAAAGAGTTGTGTTGTGGTTGGTCTCCTAGAAAAAGAGAGTATTTTGCAATCATGATGCATAGACCCATCGCTTAGTGCAGTATAATACAATCTTTTACCTTTGTAATTATGCTTGCTCAGTCTCGCCTCTTATGAGGCTAAAATTACTGATGTGTGGCATGTTCTTCTAACAGGCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACA</genome_strand>
        <mrna_strand>GATTAATCACATTTCTGCTTCAATATTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697911" ref_strand="+" ref_description="SGN-E697911 [FA04CG02]">
      <seq>caatattcatggcacctataaagggccttccctctaaacaacgaactgcattagctcagcgttctagtgaaagatggggccaatatggtaggttatttagcactcaggctgcatcaactgctagcactccccaacctacacccccacccccacctcccgagaggactcactttggtggccttaaagatgaggatcgtattttcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagatcggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaagaaatctggtcttcgaggacgtggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatccatgcggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="77783" stop="78849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78086" g_stop="78549" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="476" r_length="465" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E697911" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78086" e_stop="78549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAAT-CATGCGGCA</genome_strand>
        <mrna_strand>GCACCTATAAAGGGCCTTCCCTCTAAACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATCGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCCATGCGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335056" ref_strand="+" ref_description="SGN-E335056 [cTOE-9-J17]">
      <seq>tcagcgttctagtgaaagcaggggccactatggtaggttatttagcactcaggctgcatcaacctgctagcactccccaacctacaccccccacccccacctcccgagaggacctcacttttggtggccttaaagcagaggatcgtattttcaccaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtaccagaacaaaagatcttgtcatcaagggttctgacttggatcgtgaatgaaatgaagaaatctggtcttcgaggacctggtggtgctggttttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcangagtggggatgagagctagagctgcttatatttatatcanggggagagtatgtgaatgaaaggttgagccttcagaaggctagacangaagcctatgaagctgggattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="77830" stop="78995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78130" g_stop="78695" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E335056" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78130" e_stop="78695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAA-CTGCTAGCACTCCCCAACCTACA-CCCCCACCCCCACCTCCCGAGAGGA-CTCAC-TTTGGTGGCCTTAAAGATGAGGATCGTATTTTCA-CAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTA-CAGAACAAAAGATCTTGTCATCAAGGGTTCTGAC-TGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCA-GGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCT-GGATTGT</genome_strand>
        <mrna_strand>TCAGCGTTCTAGTGAAAGCAGGGGCCACTATGGTAGGTTATTTAGCACTCAGGCTGCATCAACCTGCTAGCACTCCCCAACCTACACCCCCCACCCCCACCTCCCGAGAGGACCTCACTTTTGGTGGCCTTAAAGCAGAGGATCGTATTTTCACCAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACCAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACCTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCANGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCANGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACANGAAGCCTATGAAGCTGGGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314111" ref_strand="+" ref_description="SGN-E314111 [cTOA-19-H18]">
      <seq>gatcgtattctcacaaatctctacggattgcatgacccttacctcaaaggtgccatgaagcgaggagattggtacagaacaaaagatcttgtcatcaagggttctgactggatcgtgaatgaaatgaataaatctggtcttccatgacgtggtggtgctggagttccatctggcctcaaatggtccttcatgccaaagacaacaaatggccggccttcatatcttgatgtcaatgctgatgaaagtgaacctggaacctgttaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgctagagtggggatgacagctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="77966" stop="78906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78266" g_stop="78606" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E314111" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78266" e_stop="78606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAG</genome_strand>
        <mrna_strand>GATCGTATTCTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAATAAATCTGGTCTTCCATGACGTGGTGGTGCTGGAGTTCCATCTGGCCTCAAATGGTCCTTCATGCCAAAGACAACAAATGGCCGGCCTTCATATCTTGATGTCAATGCTGATGAAAGTGAACCTGGAACCTGTTAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCTAGAGTGGGGATGACAGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700651" ref_strand="+" ref_description="SGN-E700651 [FA13DA06]">
      <seq>ttccatctggtctcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcaggagtggggatgagagctagagctgcttatatttatatcaggggagagtatgtgaatgaaaggttgagccttcagaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattttgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataatgccgggacaaagctgttttgcatctcaggccatgttaacaagccctgtacagttgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="78129" stop="79320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78429" g_stop="79020" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E700651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78429" e_stop="79020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGA</genome_strand>
        <mrna_strand>TTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202362" ref_strand="+" ref_description="SGN-E202362 [cLEC-6-B22]">
      <seq>tcaaatggtccttcatgccaaagacaacagatggccgtccttcatatcttgtcgtcaatgctgatgaaagtgaacctggaacctgtaaagacagggaaatcatgcggcatgacccacacaagttgttggaaggctgtctgattgcatgagtggggatgagagctagagctgcttatatttatatcacgggagagtatgtgaatgaaaggttgagccttcaaaaggctagacaagaagcctatgaagctggattgttggggaaaaatgcttgtggatctggttatgattctgacgtatatattcattttggtgctggtgcctatatttgtggtgaagagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="78141" stop="79224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78441" g_stop="78924" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E202362" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78441" e_stop="78924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGG</genome_strand>
        <mrna_strand>TCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCATGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCACGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAAAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTCTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698922" ref_strand="+" ref_description="SGN-E698922 [FA08AB02]">
      <seq>gagacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataatgccgggacaaagctgttttgcatctcaggccatgttaacaagccctgtacagttgaagaggaaatgagtatttcattgaaggagctgctagagaggcactgtggtggtgtgcgtggaggatgggacaatttgcttgctgttataccaggaggttcatctgttccactgcttcccaagaacatatgtgaggatgtacttatggattttgatgcactcaaagctgtgcagtcagggttgggaactgctgctgtaattgtcatggacaagtcaactgatgttgtagatgcaattgcaaggctctcgtacttctacaagcacgagagttgtggtcaatgtacacccatgtagggaaggcacaggatggctttggatgatcatggaaagaatgaaggttggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="78476" stop="79497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78776" g_stop="79451" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="677" r_length="677" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E698922" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78776" e_stop="79451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACA-CCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGC</genome_strand>
        <mrna_strand>GAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262570" ref_strand="+" ref_description="SGN-E262570 [cLEG-63-I24]">
      <seq>agacagctcttctggagagccttgagggcaaacaaggcaaaccaagattgaagcctccatttccagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacagtagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="78477" stop="79261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78777" g_stop="78961" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E262570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78777" e_stop="78961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAAT</genome_strand>
        <mrna_strand>AGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699213" ref_strand="+" ref_description="SGN-E699213 [FA09AD09]">
      <seq>caaacaaggnaaaccaagattgaagcctccatctctagctaatgcaggactatatggatgtccaacaactgttacaaatgttgaaacactagctgtttcaccaaccatcttaaggcgtggtccagagtggtttgctagttttggccggaagaataatgccgggacaaagctgctttgcatctcaggccatgttaacaagccctgtacagttgaagaggaaatgactatttccttgaacgagctgctacagaggcactgtggtggtgtgcgtggaggatgggacaatttgcttgctgttatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="78505" stop="79407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78805" g_stop="79107" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E699213" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78805" e_stop="79107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACC</genome_strand>
        <mrna_strand>CAAACAAGGNAAACCAAGATTGAAGCCTCCATCTCTAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACACTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGCTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGACTATTTCCTTGAACGAGCTGCTACAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268225" ref_strand="+" ref_description="SGN-E268225 [cLEM-3-A4]">
      <seq>atgagtctttcattgaaggagctgctacagaggcactgaggtggtgtgcgtggaggatgggacaatttgcttgctgttataccaggaggttcatctgtttcactgcttcccaagaacatatgtgaggatgtacttatggattttgatgcactcaaagctgtgcagtcagggttgggaactgatgctgtaattgtcatggacaagttaactgatgttgtctatgcaattgcaaggctctcgtacttctacaagcacgagagttgtggtcaatgtacaccatgtagggaatgcacacgatggctttggatgatcatggttagaatgaacggtggcaatgcaaagttggaagagattgacatgctccaagaggtgacaaaacagattgaagggcacactatttgtgccttgggtgacgctgctgcttggccagtacagggtcttattaggcactttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0014P22-osNUq/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0014P22.2" temp_strand="+" temp_description="C02SLm0014P22.2  AC215471.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0014P22 sequenced_by:kribb upload_account_name:korea">
        <position start="78725" stop="79497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79025" g_stop="79479" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0014P22.2" gen_strand="+" ref_id="SGN-E268225" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0014P22.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79025" e_stop="79479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAG</genome_strand>
        <mrna_strand>ATGAGTCTTTCATTGAAGGAGCTGCTACAGAGGCACTGAGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTTCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGATGCTGTAATTGTCATGGACAAGTTAACTGATGTTGTCTATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAATGCACACGATGGCTTTGGATGATCATGGTTAGAATGAACGGTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>198</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4755" PGL_stop="1"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4749" e_stop="4660"/>
            <exon e_start="2977" e_stop="2837"/>
            <exon e_start="2757" e_stop="1644"/>
            <exon e_start="1424" e_stop="1338"/>
            <exon e_start="694" e_stop="521"/>
            <exon e_start="441" e_stop="333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="0.987"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4749" e_stop="4660" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2977" e_stop="2837" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="2757" e_stop="1644" e_length="1114"/>
          </exon>
          <intron i_serial="3" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1424" e_stop="1338" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1337" i_stop="695" i_length="643"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="694" e_stop="521" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="520" i_stop="442" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="441" e_stop="333" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4749" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4748" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4747" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4747" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2710" stop="2306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2640" stop="2165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2562" stop="1888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2558" stop="1932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2406" stop="1915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2323" stop="2047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2183" stop="1644"/>
              <exon start="1424" stop="1387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2149" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2149" stop="1644"/>
              <exon start="1424" stop="1375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2111" stop="1644"/>
              <exon start="1424" stop="1398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2099" stop="1644"/>
              <exon start="1424" stop="1389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2099" stop="1698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1998" stop="1708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1801" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="521"/>
              <exon start="441" stop="333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1757" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="521"/>
              <exon start="441" stop="346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTT</gDNA_template>
            <first_frame> N  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  V  Q  *  P  N  F  L  I  F  P  Y  P  L  P  C  P  N  S  E  R  R  I  *  N  L  N  L  T  C  S  T  F  K  V  L  I  A  E  H  I  D  L  S  D  I  R  V  *  I  L  I  F  S  H  F  S  T  F  T  Y  I  F  I  S  C  I  I  W  S  L  Y  R  S  *  F  L  S  W  S  F  N  *  *  *  L  F  E  *  Y  K  S  L  S  L  L  K  K  I  G  I  K  L  K  N  D  F  L  R  *  *  L  F  S  K  V  T  I  *  E  I  N  P  P  L  Q  T  T  T  A  C  L  N  S  Q  S  Y  L  S  M  Y  N  N  V  L  T  *  P  N  I  S  R  K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  V  K  K  I  R  K  M  A  L  C  F  L  L  T  V  *  *  P  L  I  V  Y  Q  L  T  F  *  C  L  L  N  H  P  K  C  F  S  K  Y  F  C  L  H  F  L  F  R  L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P   </first_frame>
            <second_frame>  I  L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L  C  S  N  R  T  F  L  S  F  H  I  L  F  L  V  P  T  V  R  G  G  F  R  I  *  T  *  H  V  Q  P  L  R  F  L  S  L  N  T  L  I  Y  R  T  Y  V  F  R  F  *  Y  S  L  I  L  V  L  S  H  I  Y  L  F  P  V  L  Y  G  P  S  T  E  V  N  F  S  V  G  R  S  T  N  S  N  Y  L  S  N  I  S  H  F  L  C  *  R  K  L  E  S  S  *  K  M  T  S  *  D  N  N  Y  L  A  K  *  P  Y  E  K  S  I  R  L  C  R  Q  L  Q  L  V  *  T  P  S  L  T  *  A  C  T  I  M  Y  L  L  N  Q  I  F  P  G  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W  L  R  K  *  E  K  W  R  Y  V  S  F  *  Q  F  N  N  H  L  L  Y  I  N  *  R  S  N  V  C  *  I  T  L  N  A  F  L  S  I  S  A  Y  I  S  Y  S  G  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  </second_frame>
            <third_frame>   F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T  C  A  V  T  E  L  S  Y  L  S  I  S  S  S  L  S  Q  Q  *  E  A  D  L  E  F  E  L  N  M  F  N  L  *  G  S  Y  R  *  T  H  *  S  I  G  H  T  C  L  D  F  N  I  L  S  F  *  Y  F  H  I  Y  I  Y  F  L  Y  Y  M  V  P  L  P  K  L  I  S  Q  L  V  V  Q  L  I  V  I  I  *  V  I  *  V  T  F  F  V  E  E  N  W  N  Q  V  E  K  *  L  L  E  I  I  T  I  *  Q  S  D  H  M  R  N  Q  S  A  S  A  D  N  Y  S  L  F  K  L  P  V  L  L  K  H  V  Q  *  C  T  Y  L  T  K  Y  F  Q  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A  G  *  E  N  K  K  N  G  V  M  F  P  F  D  S  L  I  T  T  Y  C  I  S  I  D  V  L  M  F  A  E  S  P  *  M  L  F  *  V  F  L  L  T  F  L  I  Q  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1922" stop="1644"/>
                    <exon start="1424" stop="1338"/>
                    <exon start="694" stop="521"/>
                    <exon start="441" stop="334"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITLNAFLSISAYISYSGWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4699" stop="4660"/>
                    <exon start="2977" stop="2837"/>
                    <exon start="2757" stop="2564"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMTCAVTELSYLSISSSLSQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4749" e_stop="4660"/>
            <exon e_start="2977" e_stop="2837"/>
            <exon e_start="2757" e_stop="1991"/>
            <exon e_start="1873" e_stop="1644"/>
            <exon e_start="1424" e_stop="1338"/>
            <exon e_start="694" e_stop="521"/>
            <exon e_start="441" e_stop="333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="0.981"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4749" e_stop="4660" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2977" e_stop="2837" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="2757" e_stop="1991" e_length="767"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1990" i_stop="1874" i_length="117"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1873" e_stop="1644" e_length="230"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1424" e_stop="1338" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1337" i_stop="695" i_length="643"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="694" e_stop="521" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="520" i_stop="442" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="441" e_stop="333" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4749" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4748" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4747" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4747" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2710" stop="2306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2640" stop="2165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2323" stop="2047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2166" stop="1991"/>
              <exon start="1873" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2166" stop="1991"/>
              <exon start="1873" stop="1644"/>
              <exon start="1424" stop="1385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1801" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="521"/>
              <exon start="441" stop="333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1757" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="521"/>
              <exon start="441" stop="346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAGGTTCTTATCGCTGAACACATTGATCTATCGGACATACGTGTTTAGATTTTAATATTCTCTCATTTTAGTACTTTCACATATATATTTATTTCCTGTATTATATGGTCCCTCTACCGAAGTTAATTTCTCAGTTGGTCGTTCAACTAATAGTAATTATTTGAGTAATATAAGTCACTTTCTTTGTTGAAGAAAATTGGAATCAAGTTGAAAAATGACTTCTTGAGATAATAACTATTTAGCAAAGTGACCATATGAGAAATCAATCCGCCTCTGCAGACAACTACAGCTTGTTTAAACTCCCAGTCTTACTTAAGCATGTACAATAATGTACTTACTTAACCAAATATTTCCAGGAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGC : GTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTT</gDNA_template>
            <first_frame> N  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  V  Q  *  P  N  F  L  I  F  P  Y  P  L  P  C  P  N  S  E  R  R  I  *  N  L  N  L  T  C  S  T  F  K  V  L  I  A  E  H  I  D  L  S  D  I  R  V  *  I  L  I  F  S  H  F  S  T  F  T  Y  I  F  I  S  C  I  I  W  S  L  Y  R  S  *  F  L  S  W  S  F  N  *  *  *  L  F  E  *  Y  K  S  L  S  L  L  K  K  I  G  I  K  L  K  N  D  F  L  R  *  *  L  F  S  K  V  T  I  *  E  I  N  P  P  L  Q  T  T  T  A  C  L  N  S  Q  S  Y  L  S  M  Y  N  N  V  L  T  *  P  N  I  S  R  K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  V  K  K  I  R  K  M  A :   L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P   </first_frame>
            <second_frame>  I  L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L  C  S  N  R  T  F  L  S  F  H  I  L  F  L  V  P  T  V  R  G  G  F  R  I  *  T  *  H  V  Q  P  L  R  F  L  S  L  N  T  L  I  Y  R  T  Y  V  F  R  F  *  Y  S  L  I  L  V  L  S  H  I  Y  L  F  P  V  L  Y  G  P  S  T  E  V  N  F  S  V  G  R  S  T  N  S  N  Y  L  S  N  I  S  H  F  L  C  *  R  K  L  E  S  S  *  K  M  T  S  *  D  N  N  Y  L  A  K  *  P  Y  E  K  S  I  R  L  C  R  Q  L  Q  L  V  *  T  P  S  L  T  *  A  C  T  I  M  Y  L  L  N  Q  I  F  P  G  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W  L  R  K  *  E  K  W   : R  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  </second_frame>
            <third_frame>   F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T  C  A  V  T  E  L  S  Y  L  S  I  S  S  S  L  S  Q  Q  *  E  A  D  L  E  F  E  L  N  M  F  N  L  *  G  S  Y  R  *  T  H  *  S  I  G  H  T  C  L  D  F  N  I  L  S  F  *  Y  F  H  I  Y  I  Y  F  L  Y  Y  M  V  P  L  P  K  L  I  S  Q  L  V  V  Q  L  I  V  I  I  *  V  I  *  V  T  F  F  V  E  E  N  W  N  Q  V  E  K  *  L  L  E  I  I  T  I  *  Q  S  D  H  M  R  N  Q  S  A  S  A  D  N  Y  S  L  F  K  L  P  V  L  L  K  H  V  Q  *  C  T  Y  L  T  K  Y  F  Q  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A  G  *  E  N  K  K  N  G  :  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2000" stop="1991"/>
                    <exon start="1873" stop="1644"/>
                    <exon start="1424" stop="1338"/>
                    <exon start="694" stop="521"/>
                    <exon start="441" stop="334"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKWRWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4699" stop="4660"/>
                    <exon start="2977" stop="2837"/>
                    <exon start="2757" stop="2564"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMTCAVTELSYLSISSSLSQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4747" e_stop="4660"/>
            <exon e_start="2977" e_stop="2837"/>
            <exon e_start="2757" e_stop="2521"/>
            <exon e_start="2167" e_stop="1644"/>
            <exon e_start="1424" e_stop="1338"/>
            <exon e_start="694" e_stop="521"/>
            <exon e_start="441" e_stop="333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="0.986"/>
          <exon-intron don_prob="0.177" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4747" e_stop="4660" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="2977" e_stop="2837" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2757" e_stop="2521" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.177" acc_prob="0.922">
            <gDNA_intron_boundary i_start="2520" i_stop="2168" i_length="353"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2167" e_stop="1644" e_length="524"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1424" e_stop="1338" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1337" i_stop="695" i_length="643"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="694" e_stop="521" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="520" i_stop="442" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="441" e_stop="333" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4747" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4747" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2886" stop="2837"/>
              <exon start="2757" stop="2521"/>
              <exon start="2167" stop="1908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2149" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2149" stop="1644"/>
              <exon start="1424" stop="1375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2111" stop="1644"/>
              <exon start="1424" stop="1398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2099" stop="1644"/>
              <exon start="1424" stop="1389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2099" stop="1698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1998" stop="1708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1801" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="521"/>
              <exon start="441" stop="333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1757" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="521"/>
              <exon start="441" stop="346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCAGTAACCGAACTTTCTTATCTTTCCATATCCTCTTCCTTGTCCCAACAGTGAGAGGCGGATTTAGAATTTGAACTTAACATGTTCAACCTTTAAG : GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTT</gDNA_template>
            <first_frame> F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T  C  A  V  T  E  L  S  Y  L  S  I  S  S  S  L  S  Q  Q  *  E  A  D  L  E  F  E  L  N  M  F  N  L  *   : G  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W  L  R  K  *  E  K  W  R  Y  V  S  F  *  Q  F  N  N  H  L  L  Y  I  N  *  R  S  N  V  C  *  I  T  L  N  A  F  L  S  I  S  A  Y  I  S  Y  S  G  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  </first_frame>
            <second_frame>  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  V  Q  *  P  N  F  L  I  F  P  Y  P  L  P  C  P  N  S  E  R  R  I  *  N  L  N  L  T  C  S  T  F  K  :  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A  G  *  E  N  K  K  N  G  V  M  F  P  F  D  S  L  I  T  T  Y  C  I  S  I  D  V  L  M  F  A  E  S  P  *  M  L  F  *  V  F  L  L  T  F  L  I  Q  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L </second_frame>
            <third_frame>   L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L  C  S  N  R  T  F  L  S  F  H  I  L  F  L  V  P  T  V  R  G  G  F  R  I  *  T  *  H  V  Q  P  L  R :   K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  V  K  K  I  R  K  M  A  L  C  F  L  L  T  V  *  *  P  L  I  V  Y  Q  L  T  F  *  C  L  L  N  H  P  K  C  F  S  K  Y  F  C  L  H  F  L  F  R  L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1922" stop="1644"/>
                    <exon start="1424" stop="1338"/>
                    <exon start="694" stop="521"/>
                    <exon start="441" stop="334"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITLNAFLSISAYISYSGWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4699" stop="4660"/>
                    <exon start="2977" stop="2837"/>
                    <exon start="2757" stop="2564"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMTCAVTELSYLSISSSLSQQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="4747" e_stop="4660"/>
            <exon e_start="2977" e_stop="2837"/>
            <exon e_start="2757" e_stop="2615"/>
            <exon e_start="2167" e_stop="1644"/>
            <exon e_start="1424" e_stop="1338"/>
            <exon e_start="694" e_stop="521"/>
            <exon e_start="441" e_stop="333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="0.977"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.793" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="4747" e_stop="4660" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2977" e_stop="2837" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2757" e_stop="2615" e_length="143"/>
          </exon>
          <intron i_serial="3" don_prob="0.793" acc_prob="0.922">
            <gDNA_intron_boundary i_start="2614" i_stop="2168" i_length="447"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2167" e_stop="1644" e_length="524"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1424" e_stop="1338" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1337" i_stop="695" i_length="643"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="694" e_stop="521" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="520" i_stop="442" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="441" e_stop="333" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4747" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4701" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2615"/>
              <exon start="2167" stop="1804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4699" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2615"/>
              <exon start="2167" stop="2015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2149" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2149" stop="1644"/>
              <exon start="1424" stop="1375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2111" stop="1644"/>
              <exon start="1424" stop="1398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2099" stop="1644"/>
              <exon start="1424" stop="1389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2099" stop="1698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1998" stop="1708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1801" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="521"/>
              <exon start="441" stop="333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1757" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="521"/>
              <exon start="441" stop="346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCA : GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTT</gDNA_template>
            <first_frame> F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T  C  A  :  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A  G  *  E  N  K  K  N  G  V  M  F  P  F  D  S  L  I  T  T  Y  C  I  S  I  D  V  L  M  F  A  E  S  P  *  M  L  F  *  V  F  L  L  T  F  L  I  Q  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L </first_frame>
            <second_frame>  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  V  Q :   K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  V  K  K  I  R  K  M  A  L  C  F  L  L  T  V  *  *  P  L  I  V  Y  Q  L  T  F  *  C  L  L  N  H  P  K  C  F  S  K  Y  F  C  L  H  F  L  F  R  L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P   </second_frame>
            <third_frame>   L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L  C   : R  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W  L  R  K  *  E  K  W  R  Y  V  S  F  *  Q  F  N  N  H  L  L  Y  I  N  *  R  S  N  V  C  *  I  T  L  N  A  F  L  S  I  S  A  Y  I  S  Y  S  G  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1922" stop="1644"/>
                    <exon start="1424" stop="1338"/>
                    <exon start="694" stop="521"/>
                    <exon start="441" stop="334"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITLNAFLSISAYISYSGWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4699" stop="4660"/>
                    <exon start="2977" stop="2837"/>
                    <exon start="2757" stop="2615"/>
                    <exon start="2167" stop="2009"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMTCAERSCIMLQFADLLERHSDELAALETWDKGKPYEQAANEEIPMLIRLFRYYAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="4755" e_stop="4660"/>
            <exon e_start="2977" e_stop="2837"/>
            <exon e_start="2757" e_stop="2620"/>
            <exon e_start="2167" e_stop="1644"/>
            <exon e_start="1424" e_stop="1338"/>
            <exon e_start="694" e_stop="521"/>
            <exon e_start="441" e_stop="333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4755" e_stop="4660" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2977" e_stop="2837" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2757" e_stop="2620" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.922">
            <gDNA_intron_boundary i_start="2619" i_stop="2168" i_length="452"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2167" e_stop="1644" e_length="524"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1424" e_stop="1338" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1337" i_stop="695" i_length="643"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="694" e_stop="521" e_length="174"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="520" i_stop="442" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="441" e_stop="333" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4755" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2620"/>
              <exon start="2167" stop="1698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4753" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2620"/>
              <exon start="2167" stop="2018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4747" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2149" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2149" stop="1644"/>
              <exon start="1424" stop="1375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2111" stop="1644"/>
              <exon start="1424" stop="1398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2099" stop="1644"/>
              <exon start="1424" stop="1389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2099" stop="1698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1998" stop="1708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1801" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="521"/>
              <exon start="441" stop="333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1757" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="521"/>
              <exon start="441" stop="346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAACAATTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTT : GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTGGTTAAGAAAATAAGAAAAATGGCGTTATGTTTCCTTTTGACAGTTTAATAACCACTTATTGTATATCAATTGACGTTCTAATGTTTGCTGAATCACCCTAAATGCTTTTCTAAGTATTTCTGCTTACATTTCTTATTCAGGTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTT</gDNA_template>
            <first_frame> Q  N  N  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  :  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A  G  *  E  N  K  K  N  G  V  M  F  P  F  D  S  L  I  T  T  Y  C  I  S  I  D  V  L  M  F  A  E  S  P  *  M  L  F  *  V  F  L  L  T  F  L  I  Q  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L </first_frame>
            <second_frame>  R  T  I  L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L :   K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  V  K  K  I  R  K  M  A  L  C  F  L  L  T  V  *  *  P  L  I  V  Y  Q  L  T  F  *  C  L  L  N  H  P  K  C  F  S  K  Y  F  C  L  H  F  L  F  R  L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P   </second_frame>
            <third_frame>   E  Q  F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T   : *  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W  L  R  K  *  E  K  W  R  Y  V  S  F  *  Q  F  N  N  H  L  L  Y  I  N  *  R  S  N  V  C  *  I  T  L  N  A  F  L  S  I  S  A  Y  I  S  Y  S  G  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1922" stop="1644"/>
                    <exon start="1424" stop="1338"/>
                    <exon start="694" stop="521"/>
                    <exon start="441" stop="334"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITLNAFLSISAYISYSGWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4699" stop="4660"/>
                    <exon start="2977" stop="2837"/>
                    <exon start="2757" stop="2620"/>
                    <exon start="2167" stop="2166"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="4747" e_stop="4660"/>
            <exon e_start="2977" e_stop="2837"/>
            <exon e_start="2757" e_stop="2615"/>
            <exon e_start="2167" e_stop="2014"/>
            <exon e_start="1873" e_stop="1644"/>
            <exon e_start="1424" e_stop="1338"/>
            <exon e_start="694" e_stop="521"/>
            <exon e_start="441" e_stop="333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.901" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.793" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4747" e_stop="4660" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.901">
            <gDNA_intron_boundary i_start="4659" i_stop="2978" i_length="1682"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2977" e_stop="2837" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.750">
            <gDNA_intron_boundary i_start="2836" i_stop="2758" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2757" e_stop="2615" e_length="143"/>
          </exon>
          <intron i_serial="3" don_prob="0.793" acc_prob="0.922">
            <gDNA_intron_boundary i_start="2614" i_stop="2168" i_length="447"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2167" e_stop="2014" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="2013" i_stop="1874" i_length="140"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1873" e_stop="1644" e_length="230"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.980">
            <gDNA_intron_boundary i_start="1643" i_stop="1425" i_length="219"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="1424" e_stop="1338" e_length="87"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="1337" i_stop="695" i_length="643"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="694" e_stop="521" e_length="174"/>
          </exon>
          <intron i_serial="7" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="520" i_stop="442" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="441" e_stop="333" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4747" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4722" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2615"/>
              <exon start="2167" stop="2014"/>
              <exon start="1873" stop="1644"/>
              <exon start="1424" stop="1343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4721" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2615"/>
              <exon start="2167" stop="2014"/>
              <exon start="1873" stop="1805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4699" stop="4660"/>
              <exon start="2977" stop="2837"/>
              <exon start="2757" stop="2615"/>
              <exon start="2167" stop="2015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1801" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="521"/>
              <exon start="441" stop="333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1757" stop="1644"/>
              <exon start="1424" stop="1338"/>
              <exon start="694" stop="521"/>
              <exon start="441" stop="346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275091" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAATGCTCTCTCTTTATGTAAACATTATGCTTTGTATGAAATAAAGGTCCTCTAAGATTTCTGTAAGCAACTTTGAAAATTTCT : TTAGGTACTCCAACTACTGGAGAAAGGGTATCAGAAGGTTTTGTAGCAGTGCCGTGGTGCATGAAGAGCCAATCACTCCACCTGTTGAGGTTAAATATAATCAGCTTCTCATTAATGGACAGTTTGTTGATGCAGCCTCAG : GGAAGACATTTCCTACATTTGACCCTCGAACAGGCGAAGCTATTACTACGGTTGCGGAGGCCGACACTGAAGATGTCAACCGTGCAGTCTTTGCTGCCCGTAAAGCATTTGATGAAGGACCATGGCCTAAAATGACTTGTGCA : GAAAGGTCATGTATAATGTTGCAGTTTGCTGATTTGCTTGAGAGGCACAGTGATGAACTTGCAGCACTTGAGACTTGGGATAAGGGAAAGCCTTACGAACAAGCTGCAAATGAAGAAATACCAATGCTCATTCGTCTTTTCAGATACTATGCTG : GTTGGGCTGATAAAATTCATGGTCTTACAGCTCCTGCTGACAGTTTGCACCATGTTCAGACCCTGCATGAGCCAATTGGTGTTGCAGGACAGATAATACCCTGGAATTTTCCGTTATTAATGTTCGCCTGGAAAGTTGGCCCTGCACTTGCTTGTGGTAACACTGTCGTACTAAAACCAGCAGAACAAACACCACTCTCTGCCCTGTATGTGTCAAAGTTATTCCATGAG : GTTGGACTTCCCCCTGGAGTCTTAAATGTCATTCCTGGATCCGGTAGTGCAGGTGCAGATCTTGCCAGTCATATGGATGTCGATAAG : ATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTT</gDNA_template>
            <first_frame> F  *  M  L  S  L  Y  V  N  I  M  L  C  M  K  *  R  S  S  K  I  S  V  S  N  F  E  N  F   : F  R  Y  S  N  Y  W  R  K  G  I  R  R  F  C  S  S  A  V  V  H  E  E  P  I  T  P  P  V  E  V  K  Y  N  Q  L  L  I  N  G  Q  F  V  D  A  A  S   : G  K  T  F  P  T  F  D  P  R  T  G  E  A  I  T  T  V  A  E  A  D  T  E  D  V  N  R  A  V  F  A  A  R  K  A  F  D  E  G  P  W  P  K  M  T  C  A  :  E  R  S  C  I  M  L  Q  F  A  D  L  L  E  R  H  S  D  E  L  A  A  L  E  T  W  D  K  G  K  P  Y  E  Q  A  A  N  E  E  I  P  M  L  I  R  L  F  R  Y  Y  A   : G  W  A  D  K  I  H  G  L  T  A  P  A  D  S  L  H  H  V  Q  T  L  H  E  P  I  G  V  A  G  Q  I  I  P  W  N  F  P  L  L  M  F  A  W  K  V  G  P  A  L  A  C  G  N  T  V  V  L  K  P  A  E  Q  T  P  L  S  A  L  Y  V  S  K  L  F  H  E  :  V  G  L  P  P  G  V  L  N  V  I  P  G  S  G  S  A  G  A  D  L  A  S  H  M  D  V  D  K  :  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  </first_frame>
            <second_frame>  F  E  C  S  L  F  M  *  T  L  C  F  V  *  N  K  G  P  L  R  F  L  *  A  T  L  K  I  S  :  L  G  T  P  T  T  G  E  R  V  S  E  G  F  V  A  V  P  W  C  M  K  S  Q  S  L  H  L  L  R  L  N  I  I  S  F  S  L  M  D  S  L  L  M  Q  P  Q  :  G  R  H  F  L  H  L  T  L  E  Q  A  K  L  L  L  R  L  R  R  P  T  L  K  M  S  T  V  Q  S  L  L  P  V  K  H  L  M  K  D  H  G  L  K  *  L  V  Q :   K  G  H  V  *  C  C  S  L  L  I  C  L  R  G  T  V  M  N  L  Q  H  L  R  L  G  I  R  E  S  L  T  N  K  L  Q  M  K  K  Y  Q  C  S  F  V  F  S  D  T  M  L  :  V  G  L  I  K  F  M  V  L  Q  L  L  L  T  V  C  T  M  F  R  P  C  M  S  Q  L  V  L  Q  D  R  *  Y  P  G  I  F  R  Y  *  C  S  P  G  K  L  A  L  H  L  L  V  V  T  L  S  Y  *  N  Q  Q  N  K  H  H  S  L  P  C  M  C  Q  S  Y  S  M  R :   L  D  F  P  L  E  S  *  M  S  F  L  D  P  V  V  Q  V  Q  I  L  P  V  I  W  M  S  I  R :   L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L </second_frame>
            <third_frame>   L  N  A  L  S  L  C  K  H  Y  A  L  Y  E  I  K  V  L  *  D  F  C  K  Q  L  *  K  F  L :   *  V  L  Q  L  L  E  K  G  Y  Q  K  V  L  *  Q  C  R  G  A  *  R  A  N  H  S  T  C  *  G  *  I  *  S  A  S  H  *  W  T  V  C  *  C  S  L  R :   E  D  I  S  Y  I  *  P  S  N  R  R  S  Y  Y  Y  G  C  G  G  R  H  *  R  C  Q  P  C  S  L  C  C  P  *  S  I  *  *  R  T  M  A  *  N  D  L  C   : R  K  V  M  Y  N  V  A  V  C  *  F  A  *  E  A  Q  *  *  T  C  S  T  *  D  L  G  *  G  K  A  L  R  T  S  C  K  *  R  N  T  N  A  H  S  S  F  Q  I  L  C  W :   L  G  *  *  N  S  W  S  Y  S  S  C  *  Q  F  A  P  C  S  D  P  A  *  A  N  W  C  C  R  T  D  N  T  L  E  F  S  V  I  N  V  R  L  E  S  W  P  C  T  C  L  W  *  H  C  R  T  K  T  S  R  T  N  T  T  L  C  P  V  C  V  K  V  I  P  *   : G  W  T  S  P  W  S  L  K  C  H  S  W  I  R  *  C  R  C  R  S  C  Q  S  Y  G  C  R  *   : D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4699" stop="4660"/>
                    <exon start="2977" stop="2837"/>
                    <exon start="2757" stop="2615"/>
                    <exon start="2167" stop="2014"/>
                    <exon start="1873" stop="1644"/>
                    <exon start="1424" stop="1338"/>
                    <exon start="694" stop="521"/>
                    <exon start="441" stop="334"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSKISVSNFENFFRYSNYWRKGIRRFCSSAVVHEEPITPPVEVKYNQLLINGQFVDAASGKTFPTFDPRTGEAITTVAEADTEDVNRAVFAARKAFDEGPWPKMTCAERSCIMLQFADLLERHSDELAALETWDKGKPYEQAANEEIPMLIRLFRYYAGWADKIHGLTAPADSLHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKPAEQTPLSALYVSKLFHEVGLPPGVLNVIPGSGSAGADLASHMDVDKIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="1248" e_stop="521"/>
            <exon e_start="441" e_stop="304"/>
            <exon e_start="23" e_stop="1"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.933" acc_prob="0.857" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1248" e_stop="521" e_length="728"/>
          </exon>
          <intron i_serial="1" don_prob="0.933" acc_prob="0.857">
            <gDNA_intron_boundary i_start="520" i_stop="442" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="441" e_stop="304" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="303" i_stop="24" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23" e_stop="1" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1248" stop="583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1231" stop="657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1231" stop="657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="806" stop="521"/>
              <exon start="441" stop="304"/>
              <exon start="23" stop="1"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="701" stop="521"/>
              <exon start="441" stop="328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338365" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAGGCAGTTTCAGTATCAAATTTGAAATGTTGGATTGTATAAAGGAGTGTCAGAACACGGTATTTCAGTTTCAACATATCTCTAGGTAGCAATGAAGCTATCCGTCGCTAATTCTACCCCCTCTTCCATCCCAAAGAAGATTAAAAGAAGTAAATAGCCTAATTATAGTGTCTCATTAGATAGTATAATCCACATGTAGAAAATGAAGAAAATCATATCTTTTTCTTCCAGCTTCCCCATTAAAAGTCAATAAACAACATAAAGAGGTTATGCATCCTGATGTCCTTTCAGCTTTTGTATTTCATGCTTGCTTTTATTGATGCAGCTGTGATGTGTAAAGTTTTCTGAGTGAATACTCTGGAATAGATGAGGGAGACTGAAGGAGCACTGACATCTTCTACTACTTGTTTTCGTATAGATTTAAACAGCTTGGTCCTCGACATTACTTGCATCTTTTCCCCCTGTAAAATGTTTTTTTTTGGTGATTTTTTAATTTTTCTGTGATGTCTAAATTGCGATGTGTCTCTACATCACTCCTTTTGGTGTCTACAGATTGCTTTTACAGGGTCCACAGAAACTGGTAAAGCTGTCGTAGGTGCAGCTGCAAAGAGCAACCTAAAACCTGTGACATTGGAGCTCGGAGGAAAATCTCCTTTCATCATTTGTGAAGATGCAGACGTTGATAAAGCTGTTGAGTTGGCTCATTCTGCTGTTTTCTTTAACCAG : GGACAATGCTGCTGTGCTGGATCTCGGACATTCGTACATGAAAGAGTATATGATGAATTTGTGGAGAAAGCCAAAGCTCGTGCTTTAAAACGCATTGTTGGAGACCCTTTCAAGAAGGGAGTTGAACAAGGTCCGCAG : ATTGATACAGAGCAATTTGAGAA</gDNA_template>
            <first_frame> P  R  Q  F  Q  Y  Q  I  *  N  V  G  L  Y  K  G  V  S  E  H  G  I  S  V  S  T  Y  L  *  V  A  M  K  L  S  V  A  N  S  T  P  S  S  I  P  K  K  I  K  R  S  K  *  P  N  Y  S  V  S  L  D  S  I  I  H  M  *  K  M  K  K  I  I  S  F  S  S  S  F  P  I  K  S  Q  *  T  T  *  R  G  Y  A  S  *  C  P  F  S  F  C  I  S  C  L  L  L  L  M  Q  L  *  C  V  K  F  S  E  *  I  L  W  N  R  *  G  R  L  K  E  H  *  H  L  L  L  L  V  F  V  *  I  *  T  A  W  S  S  T  L  L  A  S  F  P  P  V  K  C  F  F  L  V  I  F  *  F  F  C  D  V  *  I  A  M  C  L  Y  I  T  P  F  G  V  Y  R  L  L  L  Q  G  P  Q  K  L  V  K  L  S  *  V  Q  L  Q  R  A  T  *  N  L  *  H  W  S  S  E  E  N  L  L  S  S  F  V  K  M  Q  T  L  I  K  L  L  S  W  L  I  L  L  F  S  L  T  R :   D  N  A  A  V  L  D  L  G  H  S  Y  M  K  E  Y  M  M  N  L  W  R  K  P  K  L  V  L  *  N  A  L  L  E  T  L  S  R  R  E  L  N  K  V  R  R :   L  I  Q  S  N  L  R  </first_frame>
            <second_frame>  Q  G  S  F  S  I  K  F  E  M  L  D  C  I  K  E  C  Q  N  T  V  F  Q  F  Q  H  I  S  R  *  Q  *  S  Y  P  S  L  I  L  P  P  L  P  S  Q  R  R  L  K  E  V  N  S  L  I  I  V  S  H  *  I  V  *  S  T  C  R  K  *  R  K  S  Y  L  F  L  P  A  S  P  L  K  V  N  K  Q  H  K  E  V  M  H  P  D  V  L  S  A  F  V  F  H  A  C  F  Y  *  C  S  C  D  V  *  S  F  L  S  E  Y  S  G  I  D  E  G  D  *  R  S  T  D  I  F  Y  Y  L  F  S  Y  R  F  K  Q  L  G  P  R  H  Y  L  H  L  F  P  L  *  N  V  F  F  W  *  F  F  N  F  S  V  M  S  K  L  R  C  V  S  T  S  L  L  L  V  S  T  D  C  F  Y  R  V  H  R  N  W  *  S  C  R  R  C  S  C  K  E  Q  P  K  T  C  D  I  G  A  R  R  K  I  S  F  H  H  L  *  R  C  R  R  *  *  S  C  *  V  G  S  F  C  C  F  L  *  P   : G  T  M  L  L  C  W  I  S  D  I  R  T  *  K  S  I  *  *  I  C  G  E  S  Q  S  S  C  F  K  T  H  C  W  R  P  F  Q  E  G  S  *  T  R  S  A   : D  *  Y  R  A  I  *  E </second_frame>
            <third_frame>   K  A  V  S  V  S  N  L  K  C  W  I  V  *  R  S  V  R  T  R  Y  F  S  F  N  I  S  L  G  S  N  E  A  I  R  R  *  F  Y  P  L  F  H  P  K  E  D  *  K  K  *  I  A  *  L  *  C  L  I  R  *  Y  N  P  H  V  E  N  E  E  N  H  I  F  F  F  Q  L  P  H  *  K  S  I  N  N  I  K  R  L  C  I  L  M  S  F  Q  L  L  Y  F  M  L  A  F  I  D  A  A  V  M  C  K  V  F  *  V  N  T  L  E  *  M  R  E  T  E  G  A  L  T  S  S  T  T  C  F  R  I  D  L  N  S  L  V  L  D  I  T  C  I  F  S  P  C  K  M  F  F  F  G  D  F  L  I  F  L  *  C  L  N  C  D  V  S  L  H  H  S  F  W  C  L  Q  I  A  F  T  G  S  T  E  T  G  K  A  V  V  G  A  A  A  K  S  N  L  K  P  V  T  L  E  L  G  G  K  S  P  F  I  I  C  E  D  A  D  V  D  K  A  V  E  L  A  H  S  A  V  F  F  N  Q  :  G  Q  C  C  C  A  G  S  R  T  F  V  H  E  R  V  Y  D  E  F  V  E  K  A  K  A  R  A  L  K  R  I  V  G  D  P  F  K  K  G  V  E  Q  G  P  Q  :  I  D  T  E  Q  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="742" stop="521"/>
                    <exon start="441" stop="304"/>
                    <exon start="23" stop="3"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLNCDVSLHHSFWCLQIAFTGSTETGKAVVGAAAKSNLKPVTLELGGKSPFIICEDADVDKAVELAHSAVFFNQGQCCCAGSRTFVHERVYDEFVEKAKARALKRIVGDPFKKGVEQGPQIDTEQFE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="4167" e_stop="3441"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="4167" e_stop="3441" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4167" stop="3441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333396" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTTTTTCCATGAGTTGATTTCCAAGAAAATGGAAATAACTTTGCCCGCATTGGATCTAACTAACAACTTATTGTTCTACCCAAGTCCAAGAAATCAAAAACAAACCCATATAATGGTAGCGTGGCGGCGGCGCGTCTTCTTCAATGGTTTCCAGGAGAAGGGGAAATAACTTTACCCACATCCGACCCAACTAACAAGTAAACCATCTTTCCCGTTATAGTTCTACCCAGGTCCAAGAAGGCAAATACAAACCCCTCTGGGCGTGGCAGCGGCGCATCTTCTTCCATGTCTTCCAAGAAAAGGGAAAATAACTTTGCCTTTTCCCATCTTCTACAGTTCCCTTAATTTTGCATTTTTTTAGAATCTAACTCAACAGTCCCTTTATGGACTTCATCACTTCTAACCAAACACAAATCCAACTAAGAAGAGATAAAACTCAATAAAATGAATAGCGTCCCAGAGGAAAATCTCAACACCTGAGTAGACATAAAAAAGAATCAACTTAGCAGTTAAATAAAATATCACATCATCAACAGCAGAAGTTGCCGCCTGAATCGCCACGAACCCAACCACAAAAGCAGAGACAAATTTCCCTTGCTGAAAGAATCAGCCCAAATCCACTACATTCTTGTACTGCAATTCCAATTACACTTGCCTCGAAATTGCCGCAAATACAGTAACTTGGTGACTTTTGAGGAAGATGGAAAAATTGATTCTTTTCTAT</gDNA_template>
            <first_frame> N  F  F  P  *  V  D  F  Q  E  N  G  N  N  F  A  R  I  G  S  N  *  Q  L  I  V  L  P  K  S  K  K  S  K  T  N  P  Y  N  G  S  V  A  A  A  R  L  L  Q  W  F  P  G  E  G  E  I  T  L  P  T  S  D  P  T  N  K  *  T  I  F  P  V  I  V  L  P  R  S  K  K  A  N  T  N  P  S  G  R  G  S  G  A  S  S  S  M  S  S  K  K  R  E  N  N  F  A  F  S  H  L  L  Q  F  P  *  F  C  I  F  L  E  S  N  S  T  V  P  L  W  T  S  S  L  L  T  K  H  K  S  N  *  E  E  I  K  L  N  K  M  N  S  V  P  E  E  N  L  N  T  *  V  D  I  K  K  N  Q  L  S  S  *  I  K  Y  H  I  I  N  S  R  S  C  R  L  N  R  H  E  P  N  H  K  S  R  D  K  F  P  L  L  K  E  S  A  Q  I  H  Y  I  L  V  L  Q  F  Q  L  H  L  P  R  N  C  R  K  Y  S  N  L  V  T  F  E  E  D  G  K  I  D  S  F  L  </first_frame>
            <second_frame>  T  F  F  H  E  L  I  S  K  K  M  E  I  T  L  P  A  L  D  L  T  N  N  L  L  F  Y  P  S  P  R  N  Q  K  Q  T  H  I  M  V  A  W  R  R  R  V  F  F  N  G  F  Q  E  K  G  K  *  L  Y  P  H  P  T  Q  L  T  S  K  P  S  F  P  L  *  F  Y  P  G  P  R  R  Q  I  Q  T  P  L  G  V  A  A  A  H  L  L  P  C  L  P  R  K  G  K  I  T  L  P  F  P  I  F  Y  S  S  L  N  F  A  F  F  *  N  L  T  Q  Q  S  L  Y  G  L  H  H  F  *  P  N  T  N  P  T  K  K  R  *  N  S  I  K  *  I  A  S  Q  R  K  I  S  T  P  E  *  T  *  K  R  I  N  L  A  V  K  *  N  I  T  S  S  T  A  E  V  A  A  *  I  A  T  N  P  T  T  K  A  E  T  N  F  P  C  *  K  N  Q  P  K  S  T  T  F  L  Y  C  N  S  N  Y  T  C  L  E  I  A  A  N  T  V  T  W  *  L  L  R  K  M  E  K  L  I  L  F  Y </second_frame>
            <third_frame>   L  F  S  M  S  *  F  P  R  K  W  K  *  L  C  P  H  W  I  *  L  T  T  Y  C  S  T  Q  V  Q  E  I  K  N  K  P  I  *  W  *  R  G  G  G  A  S  S  S  M  V  S  R  R  R  G  N  N  F  T  H  I  R  P  N  *  Q  V  N  H  L  S  R  Y  S  S  T  Q  V  Q  E  G  K  Y  K  P  L  W  A  W  Q  R  R  I  F  F  H  V  F  Q  E  K  G  K  *  L  C  L  F  P  S  S  T  V  P  L  I  L  H  F  F  R  I  *  L  N  S  P  F  M  D  F  I  T  S  N  Q  T  Q  I  Q  L  R  R  D  K  T  Q  *  N  E  *  R  P  R  G  K  S  Q  H  L  S  R  H  K  K  E  S  T  *  Q  L  N  K  I  S  H  H  Q  Q  Q  K  L  P  P  E  S  P  R  T  Q  P  Q  K  Q  R  Q  I  S  L  A  E  R  I  S  P  N  P  L  H  S  C  T  A  I  P  I  T  L  A  S  K  L  P  Q  I  Q  *  L  G  D  F  *  G  R  W  K  N  *  F  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3651" stop="3442"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKYHIINSRSCRLNRHEPNHKSRDKFPLLKESAQIHYILVLQFQLHLPRNCRKYSNLVTFEEDGKIDSFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="1674" PGL_stop="2006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1674" e_stop="2006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="1674" e_stop="2006" e_length="333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1674" stop="2006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAGTGGTGTTTGTTCTGCTGGTTTTAGTACGACAGTGTTACCACAAGCAAGTGCAGGGCCAACTTTCCAGGCGAACATTAATAACGGAAAATTCCAGGGTATTATCTGTCCTGCAACACCAATTGGCTCATGCAGGGTCTGAACATGGTGCAAACTGTCAGCAGGAGCTGTAAGACCATGAATTTTATCAGCCCAACCTGAATAAGAAATGTAAGCAGAAATACTTAGAAAAGCATTTAGGGTGATTCAGCAAACATTAGAACGTCAATTGATATACAATAAGTGGTTATTAAACTGTCAAAAGGAAACATAACGCCATTTTTCTTATTT</gDNA_template>
            <first_frame> R  E  W  C  L  F  C  W  F  *  Y  D  S  V  T  T  S  K  C  R  A  N  F  P  G  E  H  *  *  R  K  I  P  G  Y  Y  L  S  C  N  T  N  W  L  M  Q  G  L  N  M  V  Q  T  V  S  R  S  C  K  T  M  N  F  I  S  P  T  *  I  R  N  V  S  R  N  T  *  K  S  I  *  G  D  S  A  N  I  R  T  S  I  D  I  Q  *  V  V  I  K  L  S  K  G  N  I  T  P  F  F  L  F </first_frame>
            <second_frame>  E  S  G  V  C  S  A  G  F  S  T  T  V  L  P  Q  A  S  A  G  P  T  F  Q  A  N  I  N  N  G  K  F  Q  G  I  I  C  P  A  T  P  I  G  S  C  R  V  *  T  W  C  K  L  S  A  G  A  V  R  P  *  I  L  S  A  Q  P  E  *  E  M  *  A  E  I  L  R  K  A  F  R  V  I  Q  Q  T  L  E  R  Q  L  I  Y  N  K  W  L  L  N  C  Q  K  E  T  *  R  H  F  S  Y   </second_frame>
            <third_frame>   R  V  V  F  V  L  L  V  L  V  R  Q  C  Y  H  K  Q  V  Q  G  Q  L  S  R  R  T  L  I  T  E  N  S  R  V  L  S  V  L  Q  H  Q  L  A  H  A  G  S  E  H  G  A  N  C  Q  Q  E  L  *  D  H  E  F  Y  Q  P  N  L  N  K  K  C  K  Q  K  Y  L  E  K  H  L  G  *  F  S  K  H  *  N  V  N  *  Y  T  I  S  G  Y  *  T  V  K  R  K  H  N  A  I  F  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0014P22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="8079" PGL_stop="9964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8079" e_stop="8400"/>
            <exon e_start="8857" e_stop="9102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.985" e_score="0.944"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="8079" e_stop="8400" e_length="322"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.985">
            <gDNA_intron_boundary i_start="8401" i_stop="8856" i_length="456"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8857" e_stop="9102" e_length="246"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8079" stop="8400"/>
              <exon start="8857" stop="9102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTATCATTTTTTTGAAAAATTAACTTTAATGAAAGTGAAATCCAAACAGGTGAGAGATATAAAAAAAAAAAAAGGAAAAGAGAGAGTACTAAATTAAGATGCAGTCCATTCTTTTGCACATAAACAGTAGTAAAGACGTAGTATAAATACTTGAAGTGCGAAGCTGAGAAATGATCCGTCGTGTATGAGTATTCATTGCTGGAGACGAGAAAATTAAATAGAGATGGAGAAGAAGAGATAAGAATCGGAGCAACGTCAAGAATTCAGATACAGAGTAATTTTTGGACAGAGACAGATTTGCTGCTGCTAAAAATGCAGAG : AAAAATCAGGCTCATCTGGCTTAAACAGCTTGGGCATTTTTAAGCTAGAAGAAGAATCAGCCATCTTCTGTTCTATTCCTCTTCTCGTATTAGTAGCAAATCGTTTGGCCAAAATTGTAGCTCCAAGTTGTTGGGAACCACGAGAACCACTGGCTACTAACGGTTGCTCAGGACCAGCGTCATCAAAACTTTGCTCATTGTAGTTACCCTCATCATTAGGATCTTGATTATAATAATAGCTCTCTT</gDNA_template>
            <first_frame> T  Y  H  F  F  E  K  L  T  L  M  K  V  K  S  K  Q  V  R  D  I  K  K  K  K  G  K  E  R  V  L  N  *  D  A  V  H  S  F  A  H  K  Q  *  *  R  R  S  I  N  T  *  S  A  K  L  R  N  D  P  S  C  M  S  I  H  C  W  R  R  E  N  *  I  E  M  E  K  K  R  *  E  S  E  Q  R  Q  E  F  R  Y  R  V  I  F  G  Q  R  Q  I  C  C  C  *  K  C  R   : E  K  S  G  S  S  G  L  N  S  L  G  I  F  K  L  E  E  E  S  A  I  F  C  S  I  P  L  L  V  L  V  A  N  R  L  A  K  I  V  A  P  S  C  W  E  P  R  E  P  L  A  T  N  G  C  S  G  P  A  S  S  K  L  C  S  L  *  L  P  S  S  L  G  S  *  L  *  *  *  L  S  </first_frame>
            <second_frame>  P  I  I  F  L  K  N  *  L  *  *  K  *  N  P  N  R  *  E  I  *  K  K  K  K  E  K  R  E  Y  *  I  K  M  Q  S  I  L  L  H  I  N  S  S  K  D  V  V  *  I  L  E  V  R  S  *  E  M  I  R  R  V  *  V  F  I  A  G  D  E  K  I  K  *  R  W  R  R  R  D  K  N  R  S  N  V  K  N  S  D  T  E  *  F  L  D  R  D  R  F  A  A  A  K  N  A  E  :  K  N  Q  A  H  L  A  *  T  A  W  A  F  L  S  *  K  K  N  Q  P  S  S  V  L  F  L  F  S  Y  *  *  Q  I  V  W  P  K  L  *  L  Q  V  V  G  N  H  E  N  H  W  L  L  T  V  A  Q  D  Q  R  H  Q  N  F  A  H  C  S  Y  P  H  H  *  D  L  D  Y  N  N  S  S  L </second_frame>
            <third_frame>   L  S  F  F  *  K  I  N  F  N  E  S  E  I  Q  T  G  E  R  Y  K  K  K  K  R  K  R  E  S  T  K  L  R  C  S  P  F  F  C  T  *  T  V  V  K  T  *  Y  K  Y  L  K  C  E  A  E  K  *  S  V  V  Y  E  Y  S  L  L  E  T  R  K  L  N  R  D  G  E  E  E  I  R  I  G  A  T  S  R  I  Q  I  Q  S  N  F  W  T  E  T  D  L  L  L  L  K  M  Q  R :   K  I  R  L  I  W  L  K  Q  L  G  H  F  *  A  R  R  R  I  S  H  L  L  F  Y  S  S  S  R  I  S  S  K  S  F  G  Q  N  C  S  S  K  L  L  G  T  T  R  T  T  G  Y  *  R  L  L  R  T  S  V  I  K  T  L  L  I  V  V  T  L  I  I  R  I  L  I  I  I  I  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8391" stop="8400"/>
                    <exon start="8857" stop="9059"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCREKSGSSGLNSLGIFKLEEESAIFCSIPLLVLVANRLAKIVAPSCWEPREPLATNGCSGPASSKLCSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9181" e_stop="9964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="9181" e_stop="9964" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9181" stop="9964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCACTGATGAGAATAGTACCTAAATGCATGCTGTAGCTTCATGCTGTGAAGACGTTTAAATTGAACTGCAAAAAATTTCAGGTCTTCAGCTCGAAGTGCAAATGCTTCAACTTCAGTAAGTGTTCTCACTGTTCGAGTTGAAGCTGGCAACTGCGTTGAGTTAGGCAGTAAGGCCCAAGTCAGCAATTCTTCACCACAAAAATCATTAGGTCCAAGGGTGATTGAATTGAAGAATCCAGATCTTCCCCCATTTGTCGTGGAGCTCTCTAGTTGTCCCCTGATGATAAAGAGCATCTCACTCACTGGATCATCTTCTAGAACAACATATGTGCCCATTATGCTCAGGGTCGACACTAGGCGTTCACATATTGCATCAAGCAACTGGTCATCCATTTGCTCAAAAAATGGAACCTGCGCAGTCAGGAGATTTTGGGGTCTCTAAAGCTTAGCAAACAAAAGTGGATGGGTTTAGGCATTTACAGAGTAAAAATACAACTCCAAACATGTGGCTGATGCAAATACAAAACGTAAGGTACATCACAAGACAAGTCAAAGCTTAAATTGATGACTGAAGAGATGGAACTATTTTATTTATTCATTCACTAATACTTATTAGTACTTATTTCTTTTGCTCAAATCTTTAACTACTGGCAAATATTTCTGCCTGCAGCTCTTTTCCTTAATGTTTGCCTCCTGAAAGTATTTCAATTCCAAGAGAAGTGAAATACTGCAAACACCACATATTACATCATCTGGCTATGCCATATATATATATATATCTAA</gDNA_template>
            <first_frame> S  T  D  E  N  S  T  *  M  H  A  V  A  S  C  C  E  D  V  *  I  E  L  Q  K  I  S  G  L  Q  L  E  V  Q  M  L  Q  L  Q  *  V  F  S  L  F  E  L  K  L  A  T  A  L  S  *  A  V  R  P  K  S  A  I  L  H  H  K  N  H  *  V  Q  G  *  L  N  *  R  I  Q  I  F  P  H  L  S  W  S  S  L  V  V  P  *  *  *  R  A  S  H  S  L  D  H  L  L  E  Q  H  M  C  P  L  C  S  G  S  T  L  G  V  H  I  L  H  Q  A  T  G  H  P  F  A  Q  K  M  E  P  A  Q  S  G  D  F  G  V  S  K  A  *  Q  T  K  V  D  G  F  R  H  L  Q  S  K  N  T  T  P  N  M  W  L  M  Q  I  Q  N  V  R  Y  I  T  R  Q  V  K  A  *  I  D  D  *  R  D  G  T  I  L  F  I  H  S  L  I  L  I  S  T  Y  F  F  C  S  N  L  *  L  L  A  N  I  S  A  C  S  S  F  P  *  C  L  P  P  E  S  I  S  I  P  R  E  V  K  Y  C  K  H  H  I  L  H  H  L  A  M  P  Y  I  Y  I  Y  L  </first_frame>
            <second_frame>  P  L  M  R  I  V  P  K  C  M  L  *  L  H  A  V  K  T  F  K  L  N  C  K  K  F  Q  V  F  S  S  K  C  K  C  F  N  F  S  K  C  S  H  C  S  S  *  S  W  Q  L  R  *  V  R  Q  *  G  P  S  Q  Q  F  F  T  T  K  I  I  R  S  K  G  D  *  I  E  E  S  R  S  S  P  I  C  R  G  A  L  *  L  S  P  D  D  K  E  H  L  T  H  W  I  I  F  *  N  N  I  C  A  H  Y  A  Q  G  R  H  *  A  F  T  Y  C  I  K  Q  L  V  I  H  L  L  K  K  W  N  L  R  S  Q  E  I  L  G  S  L  K  L  S  K  Q  K  W  M  G  L  G  I  Y  R  V  K  I  Q  L  Q  T  C  G  *  C  K  Y  K  T  *  G  T  S  Q  D  K  S  K  L  K  L  M  T  E  E  M  E  L  F  Y  L  F  I  H  *  Y  L  L  V  L  I  S  F  A  Q  I  F  N  Y  W  Q  I  F  L  P  A  A  L  F  L  N  V  C  L  L  K  V  F  Q  F  Q  E  K  *  N  T  A  N  T  T  Y  Y  I  I  W  L  C  H  I  Y  I  Y  I  * </second_frame>
            <third_frame>   H  *  *  E  *  Y  L  N  A  C  C  S  F  M  L  *  R  R  L  N  *  T  A  K  N  F  R  S  S  A  R  S  A  N  A  S  T  S  V  S  V  L  T  V  R  V  E  A  G  N  C  V  E  L  G  S  K  A  Q  V  S  N  S  S  P  Q  K  S  L  G  P  R  V  I  E  L  K  N  P  D  L  P  P  F  V  V  E  L  S  S  C  P  L  M  I  K  S  I  S  L  T  G  S  S  S  R  T  T  Y  V  P  I  M  L  R  V  D  T  R  R  S  H  I  A  S  S  N  W  S  S  I  C  S  K  N  G  T  C  A  V  R  R  F  W  G  L  *  S  L  A  N  K  S  G  W  V  *  A  F  T  E  *  K  Y  N  S  K  H  V  A  D  A  N  T  K  R  K  V  H  H  K  T  S  Q  S  L  N  *  *  L  K  R  W  N  Y  F  I  Y  S  F  T  N  T  Y  *  Y  L  F  L  L  L  K  S  L  T  T  G  K  Y  F  C  L  Q  L  F  S  L  M  F  A  S  *  K  Y  F  N  S  K  R  S  E  I  L  Q  T  P  H  I  T  S  S  G  Y  A  I  Y  I  Y  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9246" stop="9623"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAKNFRSSARSANASTSVSVLTVRVEAGNCVELGSKAQVSNSSPQKSLGPRVIELKNPDLPPFVVELSSCPLMIKSISLTGSSSRTTYVPIMLRVDTRRSHIASSNWSSICSKNGTCAVRRFWGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="8280" e_stop="8400"/>
            <exon e_start="9263" e_stop="9710"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.821" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8280" e_stop="8400" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.821">
            <gDNA_intron_boundary i_start="8401" i_stop="9262" i_length="862"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9263" e_stop="9710" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8280" stop="8400"/>
              <exon start="9263" stop="9710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGACGAGAAAATTAAATAGAGATGGAGAAGAAGAGATAAGAATCGGAGCAACGTCAAGAATTCAGATACAGAGTAATTTTTGGACAGAGACAGATTTGCTGCTGCTAAAAATGCAGAG : GTCTTCAGCTCGAAGTGCAAATGCTTCAACTTCAGTAAGTGTTCTCACTGTTCGAGTTGAAGCTGGCAACTGCGTTGAGTTAGGCAGTAAGGCCCAAGTCAGCAATTCTTCACCACAAAAATCATTAGGTCCAAGGGTGATTGAATTGAAGAATCCAGATCTTCCCCCATTTGTCGTGGAGCTCTCTAGTTGTCCCCTGATGATAAAGAGCATCTCACTCACTGGATCATCTTCTAGAACAACATATGTGCCCATTATGCTCAGGGTCGACACTAGGCGTTCACATATTGCATCAAGCAACTGGTCATCCATTTGCTCAAAAAATGGAACCTGCGCAGTCAGGAGATTTTGGGGTCTCTAAAGCTTAGCAAACAAAAGTGGATGGGTTTAGGCATTTACAGAGTAAAAATACAACTCCAAACATGTGGCTGATGCAAATACAAAACGT</gDNA_template>
            <first_frame> W  R  R  E  N  *  I  E  M  E  K  K  R  *  E  S  E  Q  R  Q  E  F  R  Y  R  V  I  F  G  Q  R  Q  I  C  C  C  *  K  C  R   : G  L  Q  L  E  V  Q  M  L  Q  L  Q  *  V  F  S  L  F  E  L  K  L  A  T  A  L  S  *  A  V  R  P  K  S  A  I  L  H  H  K  N  H  *  V  Q  G  *  L  N  *  R  I  Q  I  F  P  H  L  S  W  S  S  L  V  V  P  *  *  *  R  A  S  H  S  L  D  H  L  L  E  Q  H  M  C  P  L  C  S  G  S  T  L  G  V  H  I  L  H  Q  A  T  G  H  P  F  A  Q  K  M  E  P  A  Q  S  G  D  F  G  V  S  K  A  *  Q  T  K  V  D  G  F  R  H  L  Q  S  K  N  T  T  P  N  M  W  L  M  Q  I  Q  N   </first_frame>
            <second_frame>  G  D  E  K  I  K  *  R  W  R  R  R  D  K  N  R  S  N  V  K  N  S  D  T  E  *  F  L  D  R  D  R  F  A  A  A  K  N  A  E  :  V  F  S  S  K  C  K  C  F  N  F  S  K  C  S  H  C  S  S  *  S  W  Q  L  R  *  V  R  Q  *  G  P  S  Q  Q  F  F  T  T  K  I  I  R  S  K  G  D  *  I  E  E  S  R  S  S  P  I  C  R  G  A  L  *  L  S  P  D  D  K  E  H  L  T  H  W  I  I  F  *  N  N  I  C  A  H  Y  A  Q  G  R  H  *  A  F  T  Y  C  I  K  Q  L  V  I  H  L  L  K  K  W  N  L  R  S  Q  E  I  L  G  S  L  K  L  S  K  Q  K  W  M  G  L  G  I  Y  R  V  K  I  Q  L  Q  T  C  G  *  C  K  Y  K  T  </second_frame>
            <third_frame>   E  T  R  K  L  N  R  D  G  E  E  E  I  R  I  G  A  T  S  R  I  Q  I  Q  S  N  F  W  T  E  T  D  L  L  L  L  K  M  Q  R :   S  S  A  R  S  A  N  A  S  T  S  V  S  V  L  T  V  R  V  E  A  G  N  C  V  E  L  G  S  K  A  Q  V  S  N  S  S  P  Q  K  S  L  G  P  R  V  I  E  L  K  N  P  D  L  P  P  F  V  V  E  L  S  S  C  P  L  M  I  K  S  I  S  L  T  G  S  S  S  R  T  T  Y  V  P  I  M  L  R  V  D  T  R  R  S  H  I  A  S  S  N  W  S  S  I  C  S  K  N  G  T  C  A  V  R  R  F  W  G  L  *  S  L  A  N  K  S  G  W  V  *  A  F  T  E  *  K  Y  N  S  K  H  V  A  D  A  N  T  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8282" stop="8400"/>
                    <exon start="9263" stop="9623"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETRKLNRDGEEEIRIGATSRIQIQSNFWTETDLLLLKMQRSSARSANASTSVSVLTVRVEAGNCVELGSKAQVSNSSPQKSLGPRVIELKNPDLPPFVVELSSCPLMIKSISLTGSSSRTTYVPIMLRVDTRRSHIASSNWSSICSKNGTCAVRRFWGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="9803" PGL_stop="8525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9803" e_stop="8645"/>
            <exon e_start="8530" e_stop="8525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.898" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="9803" e_stop="8645" e_length="1159"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.898">
            <gDNA_intron_boundary i_start="8644" i_stop="8531" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8530" e_stop="8525" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9803" stop="9268"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9408" stop="8685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9104" stop="8645"/>
              <exon start="8530" stop="8525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGTACTAATAAGTATTAGTGAATGAATAAATAAAATAGTTCCATCTCTTCAGTCATCAATTTAAGCTTTGACTTGTCTTGTGATGTACCTTACGTTTTGTATTTGCATCAGCCACATGTTTGGAGTTGTATTTTTACTCTGTAAATGCCTAAACCCATCCACTTTTGTTTGCTAAGCTTTAGAGACCCCAAAATCTCCTGACTGCGCAGGTTCCATTTTTTGAGCAAATGGATGACCAGTTGCTTGATGCAATATGTGAACGCCTAGTGTCGACCCTGAGCATAATGGGCACATATGTTGTTCTAGAAGATGATCCAGTGAGTGAGATGCTCTTTATCATCAGGGGACAACTAGAGAGCTCCACGACAAATGGGGGAAGATCTGGATTCTTCAATTCAATCACCCTTGGACCTAATGATTTTTGTGGTGAAGAATTGCTGACTTGGGCCTTACTGCCTAACTCAACGCAGTTGCCAGCTTCAACTCGAACAGTGAGAACACTTACTGAAGTTGAAGCATTTGCACTTCGAGCTGAAGACCTGAAATTTTTTGCAGTTCAATTTAAACGTCTTCACAGCATGAAGCTACAGCATGCATTTAGGTACTATTCTCATCAGTGGAGAACATGGGGTGCTTGTTTTATACAGGCTGCATGGAGAAGGTATAAGAAGAAAAAGATGGAATACGAGTTGGCTCTACAAGAGAGCTATTATTATAATCAAGATCCTAATGATGAGGGTAACTACAATGAGCAAAGTTTTGATGACGCTGGTCCTGAGCAACCGTTAGTAGCCAGTGGTTCTCGTGGTTCCCAACAACTTGGAGCTACAATTTTGGCCAAACGATTTGCTACTAATACGAGAAGAGGAATAGAACAGAAGATGGCTGATTCTTCTTCTAGCTTAAAAATGCCCAAGCTGTTTAAGCCAGATGAGCCTGATTTTTCTGCAGAATGAAGGCCACATCATATGTAATTAGTTAGAACACCTTGCATTACTGAAAGGTACTGGTGACTGGTGAGTAATGACAAAGCTAGTACCCTTTTTTTTAAAACTTTTTTGTAAATTTCAGGAACTATAGGCCTTTTTGATTACAACATTATTCCCTTTTCAATCATGTGAAATACAACCTTCTTTTCTAGTTGATTGTGCCTAAAA : AAAAAA</gDNA_template>
            <first_frame> *  V  L  I  S  I  S  E  *  I  N  K  I  V  P  S  L  Q  S  S  I  *  A  L  T  C  L  V  M  Y  L  T  F  C  I  C  I  S  H  M  F  G  V  V  F  L  L  C  K  C  L  N  P  S  T  F  V  C  *  A  L  E  T  P  K  S  P  D  C  A  G  S  I  F  *  A  N  G  *  P  V  A  *  C  N  M  *  T  P  S  V  D  P  E  H  N  G  H  I  C  C  S  R  R  *  S  S  E  *  D  A  L  Y  H  Q  G  T  T  R  E  L  H  D  K  W  G  K  I  W  I  L  Q  F  N  H  P  W  T  *  *  F  L  W  *  R  I  A  D  L  G  L  T  A  *  L  N  A  V  A  S  F  N  S  N  S  E  N  T  Y  *  S  *  S  I  C  T  S  S  *  R  P  E  I  F  C  S  S  I  *  T  S  S  Q  H  E  A  T  A  C  I  *  V  L  F  S  S  V  E  N  M  G  C  L  F  Y  T  G  C  M  E  K  V  *  E  E  K  D  G  I  R  V  G  S  T  R  E  L  L  L  *  S  R  S  *  *  *  G  *  L  Q  *  A  K  F  *  *  R  W  S  *  A  T  V  S  S  Q  W  F  S  W  F  P  T  T  W  S  Y  N  F  G  Q  T  I  C  Y  *  Y  E  K  R  N  R  T  E  D  G  *  F  F  F  *  L  K  N  A  Q  A  V  *  A  R  *  A  *  F  F  C  R  M  K  A  T  S  Y  V  I  S  *  N  T  L  H  Y  *  K  V  L  V  T  G  E  *  *  Q  S  *  Y  P  F  F  *  N  F  F  V  N  F  R  N  Y  R  P  F  *  L  Q  H  Y  S  L  F  N  H  V  K  Y  N  L  L  F  *  L  I  V  P  K   : K  K  </first_frame>
            <second_frame>  K  Y  *  *  V  L  V  N  E  *  I  K  *  F  H  L  F  S  H  Q  F  K  L  *  L  V  L  *  C  T  L  R  F  V  F  A  S  A  T  C  L  E  L  Y  F  Y  S  V  N  A  *  T  H  P  L  L  F  A  K  L  *  R  P  Q  N  L  L  T  A  Q  V  P  F  F  E  Q  M  D  D  Q  L  L  D  A  I  C  E  R  L  V  S  T  L  S  I  M  G  T  Y  V  V  L  E  D  D  P  V  S  E  M  L  F  I  I  R  G  Q  L  E  S  S  T  T  N  G  G  R  S  G  F  F  N  S  I  T  L  G  P  N  D  F  C  G  E  E  L  L  T  W  A  L  L  P  N  S  T  Q  L  P  A  S  T  R  T  V  R  T  L  T  E  V  E  A  F  A  L  R  A  E  D  L  K  F  F  A  V  Q  F  K  R  L  H  S  M  K  L  Q  H  A  F  R  Y  Y  S  H  Q  W  R  T  W  G  A  C  F  I  Q  A  A  W  R  R  Y  K  K  K  K  M  E  Y  E  L  A  L  Q  E  S  Y  Y  Y  N  Q  D  P  N  D  E  G  N  Y  N  E  Q  S  F  D  D  A  G  P  E  Q  P  L  V  A  S  G  S  R  G  S  Q  Q  L  G  A  T  I  L  A  K  R  F  A  T  N  T  R  R  G  I  E  Q  K  M  A  D  S  S  S  S  L  K  M  P  K  L  F  K  P  D  E  P  D  F  S  A  E  *  R  P  H  H  M  *  L  V  R  T  P  C  I  T  E  R  Y  W  *  L  V  S  N  D  K  A  S  T  L  F  F  K  T  F  L  *  I  S  G  T  I  G  L  F  D  Y  N  I  I  P  F  S  I  M  *  N  T  T  F  F  S  S  *  L  C  L  K  :  K  K </second_frame>
            <third_frame>   S  T  N  K  Y  *  *  M  N  K  *  N  S  S  I  S  S  V  I  N  L  S  F  D  L  S  C  D  V  P  Y  V  L  Y  L  H  Q  P  H  V  W  S  C  I  F  T  L  *  M  P  K  P  I  H  F  C  L  L  S  F  R  D  P  K  I  S  *  L  R  R  F  H  F  L  S  K  W  M  T  S  C  L  M  Q  Y  V  N  A  *  C  R  P  *  A  *  W  A  H  M  L  F  *  K  M  I  Q  *  V  R  C  S  L  S  S  G  D  N  *  R  A  P  R  Q  M  G  E  D  L  D  S  S  I  Q  S  P  L  D  L  M  I  F  V  V  K  N  C  *  L  G  P  Y  C  L  T  Q  R  S  C  Q  L  Q  L  E  Q  *  E  H  L  L  K  L  K  H  L  H  F  E  L  K  T  *  N  F  L  Q  F  N  L  N  V  F  T  A  *  S  Y  S  M  H  L  G  T  I  L  I  S  G  E  H  G  V  L  V  L  Y  R  L  H  G  E  G  I  R  R  K  R  W  N  T  S  W  L  Y  K  R  A  I  I  I  I  K  I  L  M  M  R  V  T  T  M  S  K  V  L  M  T  L  V  L  S  N  R  *  *  P  V  V  L  V  V  P  N  N  L  E  L  Q  F  W  P  N  D  L  L  L  I  R  E  E  E  *  N  R  R  W  L  I  L  L  L  A  *  K  C  P  S  C  L  S  Q  M  S  L  I  F  L  Q  N  E  G  H  I  I  C  N  *  L  E  H  L  A  L  L  K  G  T  G  D  W  *  V  M  T  K  L  V  P  F  F  L  K  L  F  C  K  F  Q  E  L  *  A  F  L  I  T  T  L  F  P  F  Q  S  C  E  I  Q  P  S  F  L  V  D  C  A  *  K :   K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9619" stop="8846"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPQNLLTAQVPFFEQMDDQLLDAICERLVSTLSIMGTYVVLEDDPVSEMLFIIRGQLESSTTNGGRSGFFNSITLGPNDFCGEELLTWALLPNSTQLPASTRTVRTLTEVEAFALRAEDLKFFAVQFKRLHSMKLQHAFRYYSHQWRTWGACFIQAAWRRYKKKKMEYELALQESYYYNQDPNDEGNYNEQSFDDAGPEQPLVASGSRGSQQLGATILAKRFATNTRRGIEQKMADSSSSLKMPKLFKPDEPDFSAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="13386" PGL_stop="12592"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13386" e_stop="12761"/>
            <exon e_start="12688" e_stop="12592"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13386" e_stop="12761" e_length="626"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12760" i_stop="12689" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12688" e_stop="12592" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13386" stop="12972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13321" stop="12761"/>
              <exon start="12688" stop="12592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13321" stop="12761"/>
              <exon start="12688" stop="12596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13308" stop="12761"/>
              <exon start="12688" stop="12614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13292" stop="12884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13286" stop="12793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13273" stop="12761"/>
              <exon start="12688" stop="12597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330304" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATGAAAAAAGGAGCTTCAATGGAACACTCTTAATTCATTCTTCCTTCTTTTCTAGCGCTAATTTTCACTCACTGTTTCATTCATAATACAAAAAAATTATTGGAATCTGTTGTGTTTTCCAGAAGAGAGACAATCTTCCGGAATCCGATTTTGATATCGGACTCCGCCATGGAAGATGACTAGAATATTTGCAAAGCCGGCGTCTCACCTCCGTCATTTACAGCAATCTTTGAAGAACAAATCATTTTCGAACGATGTGCCATGGTGGCGCCAAATTCTCGATCCAAACAGCGATATCGTCAATCGCTGGAACTATGTCTTCCTCCTTACCTGTCTCATCTCTCTTTTCATCGATCCACTCTACTTCTACGTACCTTTCGTCAGCGATAGAGCTTGTATGTCCACTGATGACGAAGCCGCCCGTGAAATTACCATCTATCGTTCTCTCACCGACATCTTTTACTTCCTTCACATTGCCATGAAGTTCCGCACAGCTTTTGTTGCTCCTAGCTCTAGGGTTTTCGGCCGGGGTGAGCTTGTTATGGATCCCCGTGAAATTGCTATACGATATCTCAAAACTGATTTCATCGTTGATTTTACAGCTGCTCTTCCCCTGCCTCAA : ATTGTTATTCGCTATGTAATCCCAGCAGCCAAAAGAAATGGTTCGGGTCATTCCAAAAGTACACTTGCACTTATCGTTCTCATACAATATGTGCCAA</gDNA_template>
            <first_frame> F  D  E  K  R  S  F  N  G  T  L  L  I  H  S  S  F  F  S  S  A  N  F  H  S  L  F  H  S  *  Y  K  K  I  I  G  I  C  C  V  F  Q  K  R  D  N  L  P  E  S  D  F  D  I  G  L  R  H  G  R  *  L  E  Y  L  Q  S  R  R  L  T  S  V  I  Y  S  N  L  *  R  T  N  H  F  R  T  M  C  H  G  G  A  K  F  S  I  Q  T  A  I  S  S  I  A  G  T  M  S  S  S  L  P  V  S  S  L  F  S  S  I  H  S  T  S  T  Y  L  S  S  A  I  E  L  V  C  P  L  M  T  K  P  P  V  K  L  P  S  I  V  L  S  P  T  S  F  T  S  F  T  L  P  *  S  S  A  Q  L  L  L  L  L  A  L  G  F  S  A  G  V  S  L  L  W  I  P  V  K  L  L  Y  D  I  S  K  L  I  S  S  L  I  L  Q  L  L  F  P  C  L  K :   L  L  F  A  M  *  S  Q  Q  P  K  E  M  V  R  V  I  P  K  V  H  L  H  L  S  F  S  Y  N  M  C  Q </first_frame>
            <second_frame>  L  M  K  K  G  A  S  M  E  H  S  *  F  I  L  P  S  F  L  A  L  I  F  T  H  C  F  I  H  N  T  K  K  L  L  E  S  V  V  F  S  R  R  E  T  I  F  R  N  P  I  L  I  S  D  S  A  M  E  D  D  *  N  I  C  K  A  G  V  S  P  P  S  F  T  A  I  F  E  E  Q  I  I  F  E  R  C  A  M  V  A  P  N  S  R  S  K  Q  R  Y  R  Q  S  L  E  L  C  L  P  P  Y  L  S  H  L  S  F  H  R  S  T  L  L  L  R  T  F  R  Q  R  *  S  L  Y  V  H  *  *  R  S  R  P  *  N  Y  H  L  S  F  S  H  R  H  L  L  L  P  S  H  C  H  E  V  P  H  S  F  C  C  S  *  L  *  G  F  R  P  G  *  A  C  Y  G  S  P  *  N  C  Y  T  I  S  Q  N  *  F  H  R  *  F  Y  S  C  S  S  P  A  S   : N  C  Y  S  L  C  N  P  S  S  Q  K  K  W  F  G  S  F  Q  K  Y  T  C  T  Y  R  S  H  T  I  C  A   </second_frame>
            <third_frame>   *  *  K  K  E  L  Q  W  N  T  L  N  S  F  F  L  L  F  *  R  *  F  S  L  T  V  S  F  I  I  Q  K  N  Y  W  N  L  L  C  F  P  E  E  R  Q  S  S  G  I  R  F  *  Y  R  T  P  P  W  K  M  T  R  I  F  A  K  P  A  S  H  L  R  H  L  Q  Q  S  L  K  N  K  S  F  S  N  D  V  P  W  W  R  Q  I  L  D  P  N  S  D  I  V  N  R  W  N  Y  V  F  L  L  T  C  L  I  S  L  F  I  D  P  L  Y  F  Y  V  P  F  V  S  D  R  A  C  M  S  T  D  D  E  A  A  R  E  I  T  I  Y  R  S  L  T  D  I  F  Y  F  L  H  I  A  M  K  F  R  T  A  F  V  A  P  S  S  R  V  F  G  R  G  E  L  V  M  D  P  R  E  I  A  I  R  Y  L  K  T  D  F  I  V  D  F  T  A  A  L  P  L  P  Q  :  I  V  I  R  Y  V  I  P  A  A  K  R  N  G  S  G  H  S  K  S  T  L  A  L  I  V  L  I  Q  Y  V  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13228" stop="12761"/>
                    <exon start="12688" stop="12593"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTPPWKMTRIFAKPASHLRHLQQSLKNKSFSNDVPWWRQILDPNSDIVNRWNYVFLLTCLISLFIDPLYFYVPFVSDRACMSTDDEAAREITIYRSLTDIFYFLHIAMKFRTAFVAPSSRVFGRGELVMDPREIAIRYLKTDFIVDFTAALPLPQIVIRYVIPAAKRNGSGHSKSTLALIVLIQYVP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="12972" PGL_stop="13386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12972" e_stop="13386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12972" e_stop="13386" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12972" stop="13386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCAGTGGACATACAAGCTCTATCGCTGACGAAAGGTACGTAGAAGTAGAGTGGATCGATGAAAAGAGAGATGAGACAGGTAAGGAGGAAGACATAGTTCCAGCGATTGACGATATCGCTGTTTGGATCGAGAATTTGGCGCCACCATGGCACATCGTTCGAAAATGATTTGTTCTTCAAAGATTGCTGTAAATGACGGAGGTGAGACGCCGGCTTTGCAAATATTCTAGTCATCTTCCATGGCGGAGTCCGATATCAAAATCGGATTCCGGAAGATTGTCTCTCTTCTGGAAAACACAACAGATTCCAATAATTTTTTTGTATTATGAATGAAACAGTGAGTGAAAATTAGCGCTAGAAAAGAAGGAAGAATGAATTAAGAGTGTTCCATTGAAGCTCCTTTTTTCATCAAA</gDNA_template>
            <first_frame> S  S  V  D  I  Q  A  L  S  L  T  K  G  T  *  K  *  S  G  S  M  K  R  E  M  R  Q  V  R  R  K  T  *  F  Q  R  L  T  I  S  L  F  G  S  R  I  W  R  H  H  G  T  S  F  E  N  D  L  F  F  K  D  C  C  K  *  R  R  *  D  A  G  F  A  N  I  L  V  I  F  H  G  G  V  R  Y  Q  N  R  I  P  E  D  C  L  S  S  G  K  H  N  R  F  Q  *  F  F  C  I  M  N  E  T  V  S  E  N  *  R  *  K  R  R  K  N  E  L  R  V  F  H  *  S  S  F  F  H  Q  </first_frame>
            <second_frame>  H  Q  W  T  Y  K  L  Y  R  *  R  K  V  R  R  S  R  V  D  R  *  K  E  R  *  D  R  *  G  G  R  H  S  S  S  D  *  R  Y  R  C  L  D  R  E  F  G  A  T  M  A  H  R  S  K  M  I  C  S  S  K  I  A  V  N  D  G  G  E  T  P  A  L  Q  I  F  *  S  S  S  M  A  E  S  D  I  K  I  G  F  R  K  I  V  S  L  L  E  N  T  T  D  S  N  N  F  F  V  L  *  M  K  Q  *  V  K  I  S  A  R  K  E  G  R  M  N  *  E  C  S  I  E  A  P  F  F  I  K </second_frame>
            <third_frame>   I  S  G  H  T  S  S  I  A  D  E  R  Y  V  E  V  E  W  I  D  E  K  R  D  E  T  G  K  E  E  D  I  V  P  A  I  D  D  I  A  V  W  I  E  N  L  A  P  P  W  H  I  V  R  K  *  F  V  L  Q  R  L  L  *  M  T  E  V  R  R  R  L  C  K  Y  S  S  H  L  P  W  R  S  P  I  S  K  S  D  S  G  R  L  S  L  F  W  K  T  Q  Q  I  P  I  I  F  L  Y  Y  E  *  N  S  E  *  K  L  A  L  E  K  K  E  E  *  I  K  S  V  P  L  K  L  L  F  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0014P22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="15528" PGL_stop="22199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15544" e_stop="15619"/>
            <exon e_start="15856" e_stop="16006"/>
            <exon e_start="16300" e_stop="16458"/>
            <exon e_start="18244" e_stop="18303"/>
            <exon e_start="18653" e_stop="18751"/>
            <exon e_start="19587" e_stop="19694"/>
            <exon e_start="19775" e_stop="19918"/>
            <exon e_start="21298" e_stop="21405"/>
            <exon e_start="21823" e_stop="21874"/>
            <exon e_start="21944" e_stop="22199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.518" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.273" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15544" e_stop="15619" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15620" i_stop="15855" i_length="236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15856" e_stop="16006" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16300" e_stop="16458" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18244" e_stop="18303" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18653" e_stop="18751" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18752" i_stop="19586" i_length="835"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19587" e_stop="19694" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19695" i_stop="19774" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="19775" e_stop="19918" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.518">
            <gDNA_intron_boundary i_start="19919" i_stop="21297" i_length="1379"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21298" e_stop="21405" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.842" acc_prob="0.981">
            <gDNA_intron_boundary i_start="21406" i_stop="21822" i_length="417"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21823" e_stop="21874" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.273" acc_prob="0.969">
            <gDNA_intron_boundary i_start="21875" i_stop="21943" i_length="69"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="21944" e_stop="22199" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15544" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
              <exon start="19587" stop="19694"/>
              <exon start="19775" stop="19918"/>
              <exon start="21298" stop="21402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15545" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15550" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
              <exon start="19587" stop="19647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15551" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
              <exon start="19587" stop="19694"/>
              <exon start="19775" stop="19826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15553" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15607" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15609" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
              <exon start="19587" stop="19694"/>
              <exon start="19775" stop="19838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15609" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
              <exon start="19587" stop="19689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15898" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
              <exon start="19587" stop="19694"/>
              <exon start="19775" stop="19790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19776" stop="19918"/>
              <exon start="21298" stop="21405"/>
              <exon start="21823" stop="21874"/>
              <exon start="21944" stop="22199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG : TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA : GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA : ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACC</gDNA_template>
            <first_frame> Q  R  Q  N  S  I  K  T  P  F  L  H  L  P  T  N  Y  T  L  H  S  P  L  P  L   : V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   L  P  T  C  S  V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  *  V  W  Q  L  T  M  L  L  N  T  E  A  *  S  *  D  *  D  M  L  L  R  K  V  S  N  T  L  K  S  R  A  I  R  N  L  S  A  C  R :   L  K  E  S  G  N  A  R  I  R  T  W  L  S  Y  P  R  L  L  K  S  L  K  I  S  L  C  L  S  R  S  T  T  W  T  E :   N  P  T  L  K  P  M  P  R  Q  I  *  P  C  I  S  R  :  M  A  K  F  K  W  N  V  T  *  *  L  N  *  V  T  N  Y  Y  L  N  L  L  G  F  R  K  *  *  M  T  A  K  T  D  Q  F  G  Y  S  V  V  *  N  Y  T  C  N  M  *  I  Y  D  L  N  Y  V  H  V  T  *  L  C  I  W  I  E  S  S  F  C  C  N  L  I  C  N  E  N  W  L  G  Q  V  H  </first_frame>
            <second_frame>  K  D  K  T  P  L  K  L  P  F  F  T  F  Q  P  T  T  P  F  T  L  L  F  R  S  :  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : F  S  L  H  A  V  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  A  C  C  R  W  K  Y   : G  F  P  A  A  *  R  C  R  C  G  N  *  Q  C  C  *  I  Q  R  R  N  L  R  T  K  I  C  S  *  E  R  F  Q  T  H  *  S  Q  G  R  F  E  T  C  L  H  A   : D  S  R  N  L  E  M  Q  E  S  E  H  G  *  A  I  Q  D  C  *  R  A  *  R  S  V  Y  V  F  P  D  Q  P  H  G  Q   : R  I  Q  H  *  S  R  C  P  G  K  F  S  R  V  S  Q  E :   W  R  N  S  S  G  M  *  H  D  N  L  I  K  S  P  T  T  T  S  T  C  W  D  L  G  N  D  E  *  P  P  R  Q  T  N  L  D  I  Q  L  S  E  T  T  L  V  T  C  R  Y  M  I  *  I  M  C  M  *  P  N  Y  V  S  G  L  K  V  A  S  A  V  T  *  F  A  M  K  I  G  W  D  K  Y  T </second_frame>
            <third_frame>   K  T  K  L  H  *  N  S  L  S  S  P  S  N  Q  L  H  P  S  L  S  S  S  A  R :   A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  S  P  Y  M  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  R  Y  A  L  E  K  G  F  K  H  I  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  Q  F  M  S  F  Q  I  N  H  M  D  R  :  E  S  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : N  G  E  I  Q  V  E  C  D  M  I  T  *  L  S  H  Q  L  L  P  Q  L  V  G  I  *  E  M  M  N  D  R  Q  D  R  P  I  W  I  F  S  C  L  K  L  H  L  *  H  V  D  I  *  S  E  L  C  A  C  N  L  I  M  Y  L  D  *  K  *  L  L  L  *  P  N  L  Q  *  K  L  V  G  T  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15564" stop="15619"/>
                    <exon start="15856" stop="16006"/>
                    <exon start="16300" stop="16458"/>
                    <exon start="18244" stop="18303"/>
                    <exon start="18653" stop="18751"/>
                    <exon start="19587" stop="19694"/>
                    <exon start="19775" stop="19918"/>
                    <exon start="21298" stop="21405"/>
                    <exon start="21823" stop="21874"/>
                    <exon start="21944" stop="21981"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>972</number_coding_nucleotides>
                  <number_encoded_amino_acids>324</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLSSPSNQLHPSLSSSARAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPSPYMQCSCILEFDGASKGNPGLAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLRYALEKGFKHIKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDQFMSFQINHMDRESNTEADAQANLAVYLKNGEIQVECDMIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15711" e_stop="16006"/>
            <exon e_start="16300" e_stop="16458"/>
            <exon e_start="18244" e_stop="18303"/>
            <exon e_start="18653" e_stop="18751"/>
            <exon e_start="19587" e_stop="19694"/>
            <exon e_start="19775" e_stop="19918"/>
            <exon e_start="21298" e_stop="21405"/>
            <exon e_start="21823" e_stop="21874"/>
            <exon e_start="21944" e_stop="22199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.518" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.273" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15711" e_stop="16006" e_length="296"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16300" e_stop="16458" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18244" e_stop="18303" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18653" e_stop="18751" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18752" i_stop="19586" i_length="835"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19587" e_stop="19694" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19695" i_stop="19774" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19775" e_stop="19918" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.518">
            <gDNA_intron_boundary i_start="19919" i_stop="21297" i_length="1379"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21298" e_stop="21405" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.842" acc_prob="0.981">
            <gDNA_intron_boundary i_start="21406" i_stop="21822" i_length="417"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21823" e_stop="21874" e_length="52"/>
          </exon>
          <intron i_serial="8" don_prob="0.273" acc_prob="0.969">
            <gDNA_intron_boundary i_start="21875" i_stop="21943" i_length="69"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="21944" e_stop="22199" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15711" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
              <exon start="19587" stop="19694"/>
              <exon start="19775" stop="19918"/>
              <exon start="21298" stop="21405"/>
              <exon start="21823" stop="21874"/>
              <exon start="21944" stop="22192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15717" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15726" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
              <exon start="19587" stop="19628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15898" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
              <exon start="19587" stop="19694"/>
              <exon start="19775" stop="19790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19776" stop="19918"/>
              <exon start="21298" stop="21405"/>
              <exon start="21823" stop="21874"/>
              <exon start="21944" stop="22199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGAAGAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TCTCCCTACATGCAGTGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGCTGCGTGAAGGTGTAGGTGTGGCAACTAACAATGTTGCTGAATACAGAGGCGTAATCTTAGGACTAAGATATGCTCTTGAGAAAGGTTTCAAACACATTAAAGTCAAGGGCGATTCGAAACTTGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAATCAGAACATGGCTGAGCTATCCAAGATTGTTAAAGAGCTTAAAGATCAGTTTATGTCTTTCCAGATCAACCACATGGACAGA : GAATCCAACACTGAAGCCGATGCCCAGGCAAATTTAGCCGTGTATCTCAAGA : ATGGCGAAATTCAAGTGGAATGTGACATGATAACTTAATTAAGTCACCAACTACTACCTCAACTTGTTGGGATTTAGGAAATGATGAATGACCGCCAAGACAGACCAATTTGGATATTCAGTTGTCTGAAACTACACTTGTAACATGTAGATATATGATCTGAATTATGTGCATGTAACCTAATTATGTATCTGGATTGAAAGTAGCTTCTGCTGTAACCTAATTTGCAATGAAAATTGGTTGGGACAAGTACACC</gDNA_template>
            <first_frame> C  E  E  N  A  L  N  H  I  V  I  I  R  R  P  Y  I  V  L  *  V  F  K  S  L  R  K  L  G  T  C  S  C  C  F  V  S  S  F  A  K  T  Y  D  C  V  D  T  V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   L  P  T  C  S  V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  *  V  W  Q  L  T  M  L  L  N  T  E  A  *  S  *  D  *  D  M  L  L  R  K  V  S  N  T  L  K  S  R  A  I  R  N  L  S  A  C  R :   L  K  E  S  G  N  A  R  I  R  T  W  L  S  Y  P  R  L  L  K  S  L  K  I  S  L  C  L  S  R  S  T  T  W  T  E :   N  P  T  L  K  P  M  P  R  Q  I  *  P  C  I  S  R  :  M  A  K  F  K  W  N  V  T  *  *  L  N  *  V  T  N  Y  Y  L  N  L  L  G  F  R  K  *  *  M  T  A  K  T  D  Q  F  G  Y  S  V  V  *  N  Y  T  C  N  M  *  I  Y  D  L  N  Y  V  H  V  T  *  L  C  I  W  I  E  S  S  F  C  C  N  L  I  C  N  E  N  W  L  G  Q  V  H  </first_frame>
            <second_frame>  V  K  K  M  P  *  I  I  *  *  *  Y  V  D  R  T  L  F  S  E  S  S  N  R  *  G  N  W  A  L  V  V  V  V  S  F  R  L  L  L  K  L  M  I  V  L  I  Q  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : F  S  L  H  A  V  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  A  C  C  R  W  K  Y   : G  F  P  A  A  *  R  C  R  C  G  N  *  Q  C  C  *  I  Q  R  R  N  L  R  T  K  I  C  S  *  E  R  F  Q  T  H  *  S  Q  G  R  F  E  T  C  L  H  A   : D  S  R  N  L  E  M  Q  E  S  E  H  G  *  A  I  Q  D  C  *  R  A  *  R  S  V  Y  V  F  P  D  Q  P  H  G  Q   : R  I  Q  H  *  S  R  C  P  G  K  F  S  R  V  S  Q  E :   W  R  N  S  S  G  M  *  H  D  N  L  I  K  S  P  T  T  T  S  T  C  W  D  L  G  N  D  E  *  P  P  R  Q  T  N  L  D  I  Q  L  S  E  T  T  L  V  T  C  R  Y  M  I  *  I  M  C  M  *  P  N  Y  V  S  G  L  K  V  A  S  A  V  T  *  F  A  M  K  I  G  W  D  K  Y  T </second_frame>
            <third_frame>   *  R  K  C  P  K  S  Y  S  N  N  T  *  T  V  H  C  S  L  S  L  Q  I  V  E  E  I  G  H  L  *  L  L  F  R  F  V  F  C  *  N  L  *  L  C  *  Y  S  A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  S  P  Y  M  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  R  Y  A  L  E  K  G  F  K  H  I  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  Q  F  M  S  F  Q  I  N  H  M  D  R  :  E  S  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : N  G  E  I  Q  V  E  C  D  M  I  T  *  L  S  H  Q  L  L  P  Q  L  V  G  I  *  E  M  M  N  D  R  Q  D  R  P  I  W  I  F  S  C  L  K  L  H  L  *  H  V  D  I  *  S  E  L  C  A  C  N  L  I  M  Y  L  D  *  K  *  L  L  L  *  P  N  L  Q  *  K  L  V  G  T  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15851" stop="16006"/>
                    <exon start="16300" stop="16458"/>
                    <exon start="18244" stop="18303"/>
                    <exon start="18653" stop="18751"/>
                    <exon start="19587" stop="19694"/>
                    <exon start="19775" stop="19918"/>
                    <exon start="21298" stop="21405"/>
                    <exon start="21823" stop="21874"/>
                    <exon start="21944" stop="21981"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>921</number_coding_nucleotides>
                  <number_encoded_amino_acids>307</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPSPYMQCSCILEFDGASKGNPGLAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLRYALEKGFKHIKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDQFMSFQINHMDRESNTEADAQANLAVYLKNGEIQVECDMIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15528" e_stop="15619"/>
            <exon e_start="15856" e_stop="16006"/>
            <exon e_start="16300" e_stop="16458"/>
            <exon e_start="18244" e_stop="18303"/>
            <exon e_start="18653" e_stop="18751"/>
            <exon e_start="19602" e_stop="19673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.677" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15528" e_stop="15619" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15620" i_stop="15855" i_length="236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15856" e_stop="16006" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16300" e_stop="16458" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18244" e_stop="18303" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18653" e_stop="18751" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.677">
            <gDNA_intron_boundary i_start="18752" i_stop="19601" i_length="850"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="19602" e_stop="19673" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15528" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
              <exon start="19602" stop="19633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15545" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15551" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
              <exon start="19602" stop="19673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15553" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15607" stop="15619"/>
              <exon start="15856" stop="16006"/>
              <exon start="16300" stop="16418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGATCAGCTACTGACAAAGACAAAACTCCATTAAAACTCCCTTTCTTCACCTTCCAACCAACTACACCCTTCACTCTCCTCTTCCGCTCG : TGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTG</gDNA_template>
            <first_frame> R  D  Q  L  L  T  K  T  K  L  H  *  N  S  L  S  S  P  S  N  Q  L  H  P  S  L  S  S  S  A  R :   A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L </first_frame>
            <second_frame>  E  I  S  Y  *  Q  R  Q  N  S  I  K  T  P  F  L  H  L  P  T  N  Y  T  L  H  S  P  L  P  L   : V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C   </second_frame>
            <third_frame>   R  S  A  T  D  K  D  K  T  P  L  K  L  P  F  F  T  F  Q  P  T  T  P  F  T  L  L  F  R  S  :  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : L  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15564" stop="15619"/>
                    <exon start="15856" stop="16006"/>
                    <exon start="16300" stop="16458"/>
                    <exon start="18244" stop="18303"/>
                    <exon start="18653" stop="18751"/>
                    <exon start="19602" stop="19673"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLSSPSNQLHPSLSSSARAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPCSCILEFDGASKGNPGLAGAGAVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="15717" e_stop="16006"/>
            <exon e_start="16300" e_stop="16458"/>
            <exon e_start="18244" e_stop="18303"/>
            <exon e_start="18653" e_stop="18751"/>
            <exon e_start="19602" e_stop="19681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.835" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.677" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15717" e_stop="16006" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16007" i_stop="16299" i_length="293"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16300" e_stop="16458" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16459" i_stop="18243" i_length="1785"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18244" e_stop="18303" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.835" acc_prob="0.993">
            <gDNA_intron_boundary i_start="18304" i_stop="18652" i_length="349"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18653" e_stop="18751" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.677">
            <gDNA_intron_boundary i_start="18752" i_stop="19601" i_length="850"/>
          </intron>
          <exon e_serial="5" e_score="0.962">
            <gDNA_exon_boundary e_start="19602" e_stop="19681" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15717" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18751"/>
              <exon start="19602" stop="19681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15717" stop="16006"/>
              <exon start="16300" stop="16458"/>
              <exon start="18244" stop="18303"/>
              <exon start="18653" stop="18682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATGCCCTAAATCATATAGTAATAATACGTAGACCGTACATTGTTCTCTGAGTCTTCAAATCGTTGAGGAAATTGGGCACTTGTAGTTGTTGTTTCGTTTCGTCTTTTGCTAAAACTTATGATTGTGTTGATACAGTGCTGGAGTTACTTGCAAAGTCAAGTCGAAACGTTGGAGTTGGAAACATAAAATGGGGGACGAGAAGGATGCGTTCTATGTCGTGCGCAAAGGGGATGTGATCGGGGTTTATAAGAACTTGAGCGATTTGCAAGCTTTGCTACGAACATCT : ATTGGTGAACCAGCCATAAGCGTTTTTAAAGGGTATCGCTTGACTAAGGAATCTGAAGAGTATCTGGCCTCTCATGGACTCAAGAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGACGATCTCTTTGGGACTCTCATCCCATGCCCATTTCGG : CAACCCGGCTCTTCAAAAGATAAAATTGTGGGGAAGAATGTTCAGGAAAAGAGGATGCAG : ATGGAGTTGGTGGCATCTCCTTCATTTGCAGCTGCTGGTCAGCAAAAACTTGCTAAATTGGACAATTTCCTAGAAGCTCCCCCAATTTCGTCATATCCT : TGTTCATGCATCCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGTCTAGCTGGTGCTGGGGCTGTGCTGCGTGCTGC</gDNA_template>
            <first_frame> E  N  A  L  N  H  I  V  I  I  R  R  P  Y  I  V  L  *  V  F  K  S  L  R  K  L  G  T  C  S  C  C  F  V  S  S  F  A  K  T  Y  D  C  V  D  T  V  L  E  L  L  A  K  S  S  R  N  V  G  V  G  N  I  K  W  G  T  R  R  M  R  S  M  S  C  A  K  G  M  *  S  G  F  I  R  T  *  A  I  C  K  L  C  Y  E  H  L :   L  V  N  Q  P  *  A  F  L  K  G  I  A  *  L  R  N  L  K  S  I  W  P  L  M  D  S  R  M  Q  C  I  L  W  I  S  V  M  F  E  T  I  S  L  G  L  S  S  H  A  H  F  G :   N  P  A  L  Q  K  I  K  L  W  G  R  M  F  R  K  R  G  C  R :   W  S  W  W  H  L  L  H  L  Q  L  L  V  S  K  N  L  L  N  W  T  I  S  *  K  L  P  Q  F  R  H  I  L :   V  H  A  S  L  S  L  M  G  L  Q  R  G  I  L  V  *  L  V  L  G  L  C  C  V  L  </first_frame>
            <second_frame>  K  M  P  *  I  I  *  *  *  Y  V  D  R  T  L  F  S  E  S  S  N  R  *  G  N  W  A  L  V  V  V  V  S  F  R  L  L  L  K  L  M  I  V  L  I  Q  C  W  S  Y  L  Q  S  Q  V  E  T  L  E  L  E  T  *  N  G  G  R  E  G  C  V  L  C  R  A  Q  R  G  C  D  R  G  L  *  E  L  E  R  F  A  S  F  A  T  N  I   : Y  W  *  T  S  H  K  R  F  *  R  V  S  L  D  *  G  I  *  R  V  S  G  L  S  W  T  Q  E  C  N  V  F  Y  G  F  Q  *  C  S  R  R  S  L  W  D  S  H  P  M  P  I  S   : A  T  R  L  F  K  R  *  N  C  G  E  E  C  S  G  K  E  D  A   : D  G  V  G  G  I  S  F  I  C  S  C  W  S  A  K  T  C  *  I  G  Q  F  P  R  S  S  P  N  F  V  I  S   : L  F  M  H  P  *  V  *  W  G  F  K  G  E  S  W  S  S  W  C  W  G  C  A  A  C  C </second_frame>
            <third_frame>   K  C  P  K  S  Y  S  N  N  T  *  T  V  H  C  S  L  S  L  Q  I  V  E  E  I  G  H  L  *  L  L  F  R  F  V  F  C  *  N  L  *  L  C  *  Y  S  A  G  V  T  C  K  V  K  S  K  R  W  S  W  K  H  K  M  G  D  E  K  D  A  F  Y  V  V  R  K  G  D  V  I  G  V  Y  K  N  L  S  D  L  Q  A  L  L  R  T  S  :  I  G  E  P  A  I  S  V  F  K  G  Y  R  L  T  K  E  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  T  L  I  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  V  G  K  N  V  Q  E  K  R  M  Q  :  M  E  L  V  A  S  P  S  F  A  A  A  G  Q  Q  K  L  A  K  L  D  N  F  L  E  A  P  P  I  S  S  Y  P  :  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  L  A  G  A  G  A  V  L  R  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15851" stop="16006"/>
                    <exon start="16300" stop="16458"/>
                    <exon start="18244" stop="18303"/>
                    <exon start="18653" stop="18751"/>
                    <exon start="19602" stop="19679"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSAGVTCKVKSKRWSWKHKMGDEKDAFYVVRKGDVIGVYKNLSDLQALLRTSIGEPAISVFKGYRLTKESEEYLASHGLKNAMYSMDFSDVRDDLFGTLIPCPFRQPGSSKDKIVGKNVQEKRMQMELVASPSFAAAGQQKLAKLDNFLEAPPISSYPCSCILEFDGASKGNPGLAGAGAVLRA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="22612" PGL_stop="29795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22619" e_stop="22657"/>
            <exon e_start="22948" e_stop="23097"/>
            <exon e_start="23319" e_stop="23477"/>
            <exon e_start="25292" e_stop="25351"/>
            <exon e_start="25948" e_stop="26046"/>
            <exon e_start="27350" e_stop="27457"/>
            <exon e_start="27537" e_stop="27680"/>
            <exon e_start="28859" e_stop="28966"/>
            <exon e_start="29396" e_stop="29447"/>
            <exon e_start="29515" e_stop="29788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.767" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22619" e_stop="22657" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22658" i_stop="22947" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22948" e_stop="23097" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23098" i_stop="23318" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23319" e_stop="23477" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23478" i_stop="25291" i_length="1814"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25292" e_stop="25351" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="25352" i_stop="25947" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25948" e_stop="26046" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.767">
            <gDNA_intron_boundary i_start="26047" i_stop="27349" i_length="1303"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27350" e_stop="27457" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27458" i_stop="27536" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27537" e_stop="27680" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="27681" i_stop="28858" i_length="1178"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28859" e_stop="28966" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="28967" i_stop="29395" i_length="429"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29396" e_stop="29447" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="29448" i_stop="29514" i_length="67"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="29515" e_stop="29788" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22619" stop="22657"/>
              <exon start="22948" stop="23097"/>
              <exon start="23319" stop="23477"/>
              <exon start="25292" stop="25351"/>
              <exon start="25948" stop="26046"/>
              <exon start="27350" stop="27457"/>
              <exon start="27537" stop="27680"/>
              <exon start="28859" stop="28965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22624" stop="22657"/>
              <exon start="22948" stop="23097"/>
              <exon start="23319" stop="23477"/>
              <exon start="25292" stop="25351"/>
              <exon start="25948" stop="26046"/>
              <exon start="27350" stop="27457"/>
              <exon start="27537" stop="27583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22625" stop="22657"/>
              <exon start="22948" stop="23097"/>
              <exon start="23319" stop="23477"/>
              <exon start="25292" stop="25351"/>
              <exon start="25948" stop="26046"/>
              <exon start="27350" stop="27442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27436" stop="27457"/>
              <exon start="27537" stop="27680"/>
              <exon start="28859" stop="28966"/>
              <exon start="29396" stop="29447"/>
              <exon start="29515" stop="29788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28879" stop="28966"/>
              <exon start="29396" stop="29447"/>
              <exon start="29515" stop="29766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269900" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : CCCCCCTACATACAGTGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCA</gDNA_template>
            <first_frame> Q  V  P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  P  P  Y  I  Q  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L  E  K  G  F  K  H  V  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *   </first_frame>
            <second_frame>  K  S  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   P  P  T  Y  S  V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  R  K  V  S  N  M  *  K  L  R  V  T  Q  N  S  S  A  C  R :   L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  </second_frame>
            <third_frame>   S  P  N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : S  P  L  H  T  V  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y   : G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  *  E  R  F  Q  T  C  K  S  *  G  *  L  K  T  R  L  H  A   : D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22999" stop="23097"/>
                    <exon start="23319" stop="23477"/>
                    <exon start="25292" stop="25351"/>
                    <exon start="25948" stop="26046"/>
                    <exon start="27350" stop="27457"/>
                    <exon start="27537" stop="27680"/>
                    <exon start="28859" stop="28966"/>
                    <exon start="29396" stop="29447"/>
                    <exon start="29515" stop="29555"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCPPYIQCSCILEFDGASKGNPGPAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLKYALEKGFKHVKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22612" e_stop="22657"/>
            <exon e_start="22948" e_stop="23097"/>
            <exon e_start="23319" e_stop="23477"/>
            <exon e_start="25292" e_stop="25351"/>
            <exon e_start="25948" e_stop="26046"/>
            <exon e_start="27365" e_stop="27457"/>
            <exon e_start="27537" e_stop="27680"/>
            <exon e_start="28859" e_stop="28966"/>
            <exon e_start="29396" e_stop="29447"/>
            <exon e_start="29515" e_stop="29788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.893" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.556" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22612" e_stop="22657" e_length="46"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22658" i_stop="22947" i_length="290"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22948" e_stop="23097" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.893" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23098" i_stop="23318" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="23319" e_stop="23477" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="23478" i_stop="25291" i_length="1814"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25292" e_stop="25351" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.961" acc_prob="0.998">
            <gDNA_intron_boundary i_start="25352" i_stop="25947" i_length="596"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25948" e_stop="26046" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.556">
            <gDNA_intron_boundary i_start="26047" i_stop="27364" i_length="1318"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27365" e_stop="27457" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27458" i_stop="27536" i_length="79"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27537" e_stop="27680" e_length="144"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="27681" i_stop="28858" i_length="1178"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28859" e_stop="28966" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="28967" i_stop="29395" i_length="429"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29396" e_stop="29447" e_length="52"/>
          </exon>
          <intron i_serial="9" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="29448" i_stop="29514" i_length="67"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="29515" e_stop="29788" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22612" stop="22657"/>
              <exon start="22948" stop="23097"/>
              <exon start="23319" stop="23477"/>
              <exon start="25292" stop="25351"/>
              <exon start="25948" stop="26046"/>
              <exon start="27365" stop="27457"/>
              <exon start="27537" stop="27680"/>
              <exon start="28859" stop="28966"/>
              <exon start="29396" stop="29425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701012" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22642" stop="22657"/>
              <exon start="22948" stop="23097"/>
              <exon start="23319" stop="23477"/>
              <exon start="25292" stop="25351"/>
              <exon start="25948" stop="26046"/>
              <exon start="27365" stop="27442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22963" stop="23097"/>
              <exon start="23319" stop="23477"/>
              <exon start="25292" stop="25351"/>
              <exon start="25948" stop="26046"/>
              <exon start="27365" stop="27457"/>
              <exon start="27537" stop="27680"/>
              <exon start="28859" stop="28903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27436" stop="27457"/>
              <exon start="27537" stop="27680"/>
              <exon start="28859" stop="28966"/>
              <exon start="29396" stop="29447"/>
              <exon start="29515" stop="29788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28879" stop="28966"/>
              <exon start="29396" stop="29447"/>
              <exon start="29515" stop="29766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269900" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTCCCAAGTCCCAACTACTCCCTTCACTCTCTTCCTCTGCTCG : TGGTGGAGTAACTTGCAAAGCCAAGTAAACGCGTTGGAGTTGGACACATAAATGGGGGACGAAAAGGATGCTTTTTATGTCGTGCATAAAGGGGATGTGATCGCTGTCTATAAGAACCTCAGTGATTTACAAGCTCTGCTACGATCTTCT : GTTGGTGAACCAGCTATAAGTGTTTATAAAGGGTATCACCTGGCTAAGCAATCAGAAGAGTATTTGGCATCTCATGGACTCAAAAATGCAATGTATTCTATGGATTTCAGTGATGTTCGAGATGATCTCTTTGGGATACTCGTCCCATGCCCTTTTCGG : CAACCTGGCTCTTCGAAAGATAAAATTATGGGGAAGAATCTTCCGGAGAAGAGGATGCAG : ATGGAGGTGGTTGCATCTCCTTCGTTTTCAGCCGCTGGTCAGCAAAAACATGCCACATTAGACAATTGCCTAGAAATTCCCCCGATTTCGTCATATTGT : TGTTCATGCATTCTTGAGTTTGATGGGGCTTCAAAGGGGAATCCTGGACCAGCTGGTGCTGGTGCCGTGCTGCGTGCTGCAGATGGAAGTATG : GTTTTCCGGTTGCGTGAAGGTGTGGGTGTGGCAACTAACAACGTTGCTGAATATAGAGGTGTAATCTTAGGGCTAAAATATGCTCTTGAGAAAGGTTTCAAACATGTAAAAGTTAAGGGTGACTCAAAACTCGTCTGCATGCAG : ACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCA</gDNA_template>
            <first_frame> L  F  P  S  P  N  Y  S  L  H  S  L  P  L  L   : V  V  E  *  L  A  K  P  S  K  R  V  G  V  G  H  I  N  G  G  R  K  G  C  F  L  C  R  A  *  R  G  C  D  R  C  L  *  E  P  Q  *  F  T  S  S  A  T  I  F   : C  W  *  T  S  Y  K  C  L  *  R  V  S  P  G  *  A  I  R  R  V  F  G  I  S  W  T  Q  K  C  N  V  F  Y  G  F  Q  *  C  S  R  *  S  L  W  D  T  R  P  M  P  F  S   : A  T  W  L  F  E  R  *  N  Y  G  E  E  S  S  G  E  E  D  A   : D  G  G  G  C  I  S  F  V  F  S  R  W  S  A  K  T  C  H  I  R  Q  L  P  R  N  S  P  D  F  V  I  L   : L  F  M  H  S  *  V  *  W  G  F  K  G  E  S  W  T  S  W  C  W  C  R  A  A  C  C  R  W  K  Y   : G  F  P  V  A  *  R  C  G  C  G  N  *  Q  R  C  *  I  *  R  C  N  L  R  A  K  I  C  S  *  E  R  F  Q  T  C  K  S  *  G  *  L  K  T  R  L  H  A   : D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A </first_frame>
            <second_frame>  S  S  Q  V  P  T  T  P  F  T  L  F  L  C  S  :  W  W  S  N  L  Q  S  Q  V  N  A  L  E  L  D  T  *  M  G  D  E  K  D  A  F  Y  V  V  H  K  G  D  V  I  A  V  Y  K  N  L  S  D  L  Q  A  L  L  R  S  S  :  V  G  E  P  A  I  S  V  Y  K  G  Y  H  L  A  K  Q  S  E  E  Y  L  A  S  H  G  L  K  N  A  M  Y  S  M  D  F  S  D  V  R  D  D  L  F  G  I  L  V  P  C  P  F  R  :  Q  P  G  S  S  K  D  K  I  M  G  K  N  L  P  E  K  R  M  Q  :  M  E  V  V  A  S  P  S  F  S  A  A  G  Q  Q  K  H  A  T  L  D  N  C  L  E  I  P  P  I  S  S  Y  C  :  C  S  C  I  L  E  F  D  G  A  S  K  G  N  P  G  P  A  G  A  G  A  V  L  R  A  A  D  G  S  M  :  V  F  R  L  R  E  G  V  G  V  A  T  N  N  V  A  E  Y  R  G  V  I  L  G  L  K  Y  A  L  E  K  G  F  K  H  V  K  V  K  G  D  S  K  L  V  C  M  Q  :  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *   </second_frame>
            <third_frame>   L  P  K  S  Q  L  L  P  S  L  S  S  S  A  R :   G  G  V  T  C  K  A  K  *  T  R  W  S  W  T  H  K  W  G  T  K  R  M  L  F  M  S  C  I  K  G  M  *  S  L  S  I  R  T  S  V  I  Y  K  L  C  Y  D  L  L :   L  V  N  Q  L  *  V  F  I  K  G  I  T  W  L  S  N  Q  K  S  I  W  H  L  M  D  S  K  M  Q  C  I  L  W  I  S  V  M  F  E  M  I  S  L  G  Y  S  S  H  A  L  F  G :   N  L  A  L  R  K  I  K  L  W  G  R  I  F  R  R  R  G  C  R :   W  R  W  L  H  L  L  R  F  Q  P  L  V  S  K  N  M  P  H  *  T  I  A  *  K  F  P  R  F  R  H  I  V :   V  H  A  F  L  S  L  M  G  L  Q  R  G  I  L  D  Q  L  V  L  V  P  C  C  V  L  Q  M  E  V  W :   F  S  G  C  V  K  V  W  V  W  Q  L  T  T  L  L  N  I  E  V  *  S  *  G  *  N  M  L  L  R  K  V  S  N  M  *  K  L  R  V  T  Q  N  S  S  A  C  R :   L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22999" stop="23097"/>
                    <exon start="23319" stop="23477"/>
                    <exon start="25292" stop="25351"/>
                    <exon start="25948" stop="26046"/>
                    <exon start="27365" stop="27457"/>
                    <exon start="27537" stop="27680"/>
                    <exon start="28859" stop="28966"/>
                    <exon start="29396" stop="29447"/>
                    <exon start="29515" stop="29555"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGDEKDAFYVVHKGDVIAVYKNLSDLQALLRSSVGEPAISVYKGYHLAKQSEEYLASHGLKNAMYSMDFSDVRDDLFGILVPCPFRQPGSSKDKIMGKNLPEKRMQMEVVASPSFSAAGQQKHATLDNCLEIPPISSYCCSCILEFDGASKGNPGPAGAGAVLRAADGSMVFRLREGVGVATNNVAEYRGVILGLKYALEKGFKHVKVKGDSKLVCMQTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28855" e_stop="28966"/>
            <exon e_start="29396" e_stop="29447"/>
            <exon e_start="29515" e_stop="29795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.740" acc_prob="0.917" e_score="0.989"/>
          <exon-intron don_prob="0.616" acc_prob="0.849" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="28855" e_stop="28966" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.740" acc_prob="0.917">
            <gDNA_intron_boundary i_start="28967" i_stop="29395" i_length="429"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29396" e_stop="29447" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.616" acc_prob="0.849">
            <gDNA_intron_boundary i_start="29448" i_stop="29514" i_length="67"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29515" e_stop="29795" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28855" stop="28966"/>
              <exon start="29396" stop="29447"/>
              <exon start="29515" stop="29795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578376" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28879" stop="28966"/>
              <exon start="29396" stop="29447"/>
              <exon start="29515" stop="29766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269900" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGACTCAAGGAATCTGGAAATGCAAGAACCAGAACATGGCTGAGCTATCCAAGATTGTGAAAGAGCTTAAAGATCATTTTGTATCATTCCAGATCAACCATATTTACAGA : GAATTCAACACTGAAGCTGATGCCCAGGCAAATTTAGCCGTGTATCTTAAGA : GTGGTGAATTTCAAGTGGAATGTGACAAGAAAACAACTTAATATTGTGAAGTCACCAACTACCCCAACTTGCTTGGGGGATTTTGTGAAGGATGAATGACACTCAAGACCGATGCATAATGGATCTTCTCTGGTCTTGTTTTTTTTTTTTGTAGATATATAATCTGAATCATCTGGATTAGAGAAACTTCTGTTTAGGGGCCTGCTCGAATCCATTATTCTCTTCTCACTTGCAATGGAAATTAATTAGTTCTCTAAAGCTAACTATTCTAGCACTTTGAA</gDNA_template>
            <first_frame> T  D  S  R  N  L  E  M  Q  E  P  E  H  G  *  A  I  Q  D  C  E  R  A  *  R  S  F  C  I  I  P  D  Q  P  Y  L  Q   : R  I  Q  H  *  S  *  C  P  G  K  F  S  R  V  S  *  E :   W  *  I  S  S  G  M  *  Q  E  N  N  L  I  L  *  S  H  Q  L  P  Q  L  A  W  G  I  L  *  R  M  N  D  T  Q  D  R  C  I  M  D  L  L  W  S  C  F  F  F  L  *  I  Y  N  L  N  H  L  D  *  R  N  F  C  L  G  A  C  S  N  P  L  F  S  S  H  L  Q  W  K  L  I  S  S  L  K  L  T  I  L  A  L  *  </first_frame>
            <second_frame>  Q  T  Q  G  I  W  K  C  K  N  Q  N  M  A  E  L  S  K  I  V  K  E  L  K  D  H  F  V  S  F  Q  I  N  H  I  Y  R  :  E  F  N  T  E  A  D  A  Q  A  N  L  A  V  Y  L  K   : S  G  E  F  Q  V  E  C  D  K  K  T  T  *  Y  C  E  V  T  N  Y  P  N  L  L  G  G  F  C  E  G  *  M  T  L  K  T  D  A  *  W  I  F  S  G  L  V  F  F  F  C  R  Y  I  I  *  I  I  W  I  R  E  T  S  V  *  G  P  A  R  I  H  Y  S  L  L  T  C  N  G  N  *  L  V  L  *  S  *  L  F  *  H  F  E </second_frame>
            <third_frame>   R  L  K  E  S  G  N  A  R  T  R  T  W  L  S  Y  P  R  L  *  K  S  L  K  I  I  L  Y  H  S  R  S  T  I  F  T  E :   N  S  T  L  K  L  M  P  R  Q  I  *  P  C  I  L  R  :  V  V  N  F  K  W  N  V  T  R  K  Q  L  N  I  V  K  S  P  T  T  P  T  C  L  G  D  F  V  K  D  E  *  H  S  R  P  M  H  N  G  S  S  L  V  L  F  F  F  F  V  D  I  *  S  E  S  S  G  L  E  K  L  L  F  R  G  L  L  E  S  I  I  L  F  S  L  A  M  E  I  N  *  F  S  K  A  N  Y  S  S  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28856" stop="28966"/>
                    <exon start="29396" stop="29447"/>
                    <exon start="29515" stop="29555"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTQGIWKCKNQNMAELSKIVKELKDHFVSFQINHIYREFNTEADAQANLAVYLKSGEFQVECDKKTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="26059" e_stop="26516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26059" e_stop="26516" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26059" stop="26516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315770" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTACCTAACAATTCTTTGTATCAATACGTTTAAATTCTTGTCATTGTCTGCTTTATCTGGATGTTGACATTCTTGGGGTGGGGTGAGGGTGGTGATTTGGTGGGTGGTTAGCCTTGGAAAGGGCTTGCTCCTATGTTTTGACTTTATTCTGCTGCTGGCCGAAACTAGTGAGGATAGTGATGCGTATTGGAGCTGATTTGGAAAATAAAAGGTTGAGAAGTCCTGATTCGGCAACCACTGATCCAAGGGGGACCAAGTGATTCTTAAATCAAACTGTAAGGGCAAAGTGGAACATTGTTGGTTAACGTTGCGCAAAAGTCCAAAGTTGGAAGATGGTGACAAAATTTATATGTAATCTATGTTGCTGGGATTCTCCAAGAAATAGTGCTGCACCCATGCTAGATCCTCCAAAATGCACTACTTTTGAAGGATTCGACATGCTCTCATCAACATTTT</gDNA_template>
            <first_frame> F  Y  L  T  I  L  C  I  N  T  F  K  F  L  S  L  S  A  L  S  G  C  *  H  S  W  G  G  V  R  V  V  I  W  W  V  V  S  L  G  K  G  L  L  L  C  F  D  F  I  L  L  L  A  E  T  S  E  D  S  D  A  Y  W  S  *  F  G  K  *  K  V  E  K  S  *  F  G  N  H  *  S  K  G  D  Q  V  I  L  K  S  N  C  K  G  K  V  E  H  C  W  L  T  L  R  K  S  P  K  L  E  D  G  D  K  I  Y  M  *  S  M  L  L  G  F  S  K  K  *  C  C  T  H  A  R  S  S  K  M  H  Y  F  *  R  I  R  H  A  L  I  N  I   </first_frame>
            <second_frame>  F  T  *  Q  F  F  V  S  I  R  L  N  S  C  H  C  L  L  Y  L  D  V  D  I  L  G  V  G  *  G  W  *  F  G  G  W  L  A  L  E  R  A  C  S  Y  V  L  T  L  F  C  C  W  P  K  L  V  R  I  V  M  R  I  G  A  D  L  E  N  K  R  L  R  S  P  D  S  A  T  T  D  P  R  G  T  K  *  F  L  N  Q  T  V  R  A  K  W  N  I  V  G  *  R  C  A  K  V  Q  S  W  K  M  V  T  K  F  I  C  N  L  C  C  W  D  S  P  R  N  S  A  A  P  M  L  D  P  P  K  C  T  T  F  E  G  F  D  M  L  S  S  T  F  </second_frame>
            <third_frame>   L  P  N  N  S  L  Y  Q  Y  V  *  I  L  V  I  V  C  F  I  W  M  L  T  F  L  G  W  G  E  G  G  D  L  V  G  G  *  P  W  K  G  L  A  P  M  F  *  L  Y  S  A  A  G  R  N  *  *  G  *  *  C  V  L  E  L  I  W  K  I  K  G  *  E  V  L  I  R  Q  P  L  I  Q  G  G  P  S  D  S  *  I  K  L  *  G  Q  S  G  T  L  L  V  N  V  A  Q  K  S  K  V  G  R  W  *  Q  N  L  Y  V  I  Y  V  A  G  I  L  Q  E  I  V  L  H  P  C  *  I  L  Q  N  A  L  L  L  K  D  S  T  C  S  H  Q  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0014P22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="30225" PGL_stop="33341"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30225" e_stop="30622"/>
            <exon e_start="31321" e_stop="31374"/>
            <exon e_start="31931" e_stop="31990"/>
            <exon e_start="32948" e_stop="33341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30225" e_stop="30622" e_length="398"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31321" e_stop="31374" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="31375" i_stop="31930" i_length="556"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31931" e_stop="31990" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="31991" i_stop="32947" i_length="957"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="32948" e_stop="33341" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30225" stop="30622"/>
              <exon start="31321" stop="31374"/>
              <exon start="31931" stop="31990"/>
              <exon start="32948" stop="33273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30225" stop="30622"/>
              <exon start="31321" stop="31374"/>
              <exon start="31931" stop="31990"/>
              <exon start="32948" stop="33221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30226" stop="30622"/>
              <exon start="31321" stop="31374"/>
              <exon start="31931" stop="31990"/>
              <exon start="32948" stop="33172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30226" stop="30622"/>
              <exon start="31321" stop="31374"/>
              <exon start="31931" stop="31990"/>
              <exon start="32948" stop="33045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30226" stop="30622"/>
              <exon start="31321" stop="31374"/>
              <exon start="31931" stop="31986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30227" stop="30622"/>
              <exon start="31321" stop="31365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30232" stop="30622"/>
              <exon start="31321" stop="31374"/>
              <exon start="31931" stop="31990"/>
              <exon start="32948" stop="33212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30232" stop="30622"/>
              <exon start="31321" stop="31370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30235" stop="30587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30237" stop="30622"/>
              <exon start="31321" stop="31374"/>
              <exon start="31931" stop="31990"/>
              <exon start="32948" stop="32994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30242" stop="30622"/>
              <exon start="31321" stop="31374"/>
              <exon start="31931" stop="31990"/>
              <exon start="32948" stop="32980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30287" stop="30622"/>
              <exon start="31321" stop="31374"/>
              <exon start="31931" stop="31990"/>
              <exon start="32948" stop="33137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30543" stop="30622"/>
              <exon start="31321" stop="31374"/>
              <exon start="31931" stop="31990"/>
              <exon start="32948" stop="33295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31931" stop="31990"/>
              <exon start="32948" stop="33341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAG : GATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAG : TTAACAAAGCAAACGACAATACAAGCTACAGGGGTGGCTTCAAGTTTGGTTGAAACAATACAAGGTTCAGGCTTCAAGTTGCAAACATTGAATCTGAGCTTTCAGGATGAAGAAGATATTAGCTAAGTGGTGGCTTGTAGAATTCAGAGACATGATAGGCTGATATCTTTCACGGGCATCCTGAGAGATCTCTGTTTATTTGTATGCCAGTAGTTTCAGTAAGCCTATATCTGTAACATTTTTGTGTTATGCAGTTCTTTGATCTTTTTCTTCCTTAGCATATGTTCCTTTCCGCAACTTATAAAAATACTTGTGAATTACTAATGATCAGCAGAATCATTTTGTTTACTTGTTGAAACAAGTGGTATACGATTGGAAAAGGTACTTCTTATGA</gDNA_template>
            <first_frame> V  P  S  I  C  N  L  A  S  G  *  E  *  K  I  T  L  R  N  L  R  R  K  K  K  I  W  R  P  S  Q  H  F  P  F  V  E  P  N  L  I  L  E  F  P  I  L  H  L  M  Q  F  P  S  F  S  Q  C  N  F  F  G  V  K  A  T  G  A  L  A  V  V  I  L  A  L  Q  V  R  *  K  R  R  Y  L  *  E  L  P  G  Y  V  L  Q  L  R  K  M  V  L  L  L  L  P  K  K  N  L  L  L  P  L  H  L  I  K  L  F  L  F  P  S  P  L  P  T  F  *  L  C  S  F  R :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  R :   I  L  K  A  L  Q  V  S  K  F  K  L  S  R  A  L  Q  V  S  S :   *  Q  S  K  R  Q  Y  K  L  Q  G  W  L  Q  V  W  L  K  Q  Y  K  V  Q  A  S  S  C  K  H  *  I  *  A  F  R  M  K  K  I  L  A  K  W  W  L  V  E  F  R  D  M  I  G  *  Y  L  S  R  A  S  *  E  I  S  V  Y  L  Y  A  S  S  F  S  K  P  I  S  V  T  F  L  C  Y  A  V  L  *  S  F  S  S  L  A  Y  V  P  F  R  N  L  *  K  Y  L  *  I  T  N  D  Q  Q  N  H  F  V  Y  L  L  K  Q  V  V  Y  D  W  K  R  Y  F  L  * </first_frame>
            <second_frame>  F  L  P  F  V  I  W  L  L  D  K  S  E  K  S  L  *  G  I  C  V  G  K  K  K  Y  G  D  R  L  S  I  F  R  L  *  S  Q  I  S  F  S  N  S  P  F  F  I  *  C  N  S  P  A  F  P  N  A  I  S  S  V  S  K  Q  Q  E  H  W  R  W  L  F  L  L  F  K  F  G  E  S  E  G  T  F  E  N  Y  Q  D  M  F  C  N  *  G  R  W  C  Y  C  C  C  R  R  R  I  C  C  S  H  Y  I  *  S  N  C  F  C  F  R  L  P  F  R  R  S  N  Y  V  L  S   : G  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R   : G  Y  *  R  H  Y  R  S  Q  N  S  S  C  R  G  H  C  K  C  R   : V  N  K  A  N  D  N  T  S  Y  R  G  G  F  K  F  G  *  N  N  T  R  F  R  L  Q  V  A  N  I  E  S  E  L  S  G  *  R  R  Y  *  L  S  G  G  L  *  N  S  E  T  *  *  A  D  I  F  H  G  H  P  E  R  S  L  F  I  C  M  P  V  V  S  V  S  L  Y  L  *  H  F  C  V  M  Q  F  F  D  L  F  L  P  *  H  M  F  L  S  A  T  Y  K  N  T  C  E  L  L  M  I  S  R  I  I  L  F  T  C  *  N  K  W  Y  T  I  G  K  G  T  S  Y   </second_frame>
            <third_frame>   S  F  H  L  *  S  G  F  W  I  R  V  K  N  H  S  E  E  F  A  S  E  K  K  N  M  A  T  V  S  A  F  S  V  C  R  A  K  S  H  S  R  I  P  H  S  S  S  N  A  I  P  Q  L  F  P  M  Q  F  L  R  C  Q  S  N  R  S  I  G  G  G  Y  S  C  S  S  S  S  V  K  A  K  V  P  L  R  T  T  R  I  C  S  A  T  E  E  D  G  A  T  A  V  A  E  E  E  S  A  A  P  T  T  S  D  Q  T  V  S  V  S  V  S  P  S  D  V  L  T  M  F  F  Q  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  :  D  I  E  G  I  T  G  L  K  I  Q  V  V  E  G  I  A  S  V  E  :  L  T  K  Q  T  T  I  Q  A  T  G  V  A  S  S  L  V  E  T  I  Q  G  S  G  F  K  L  Q  T  L  N  L  S  F  Q  D  E  E  D  I  S  *  V  V  A  C  R  I  Q  R  H  D  R  L  I  S  F  T  G  I  L  R  D  L  C  L  F  V  C  Q  *  F  Q  *  A  Y  I  C  N  I  F  V  L  C  S  S  L  I  F  F  F  L  S  I  C  S  F  P  Q  L  I  K  I  L  V  N  Y  *  *  S  A  E  S  F  C  L  L  V  E  T  S  G  I  R  L  E  K  V  L  L  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30242" stop="30622"/>
                    <exon start="31321" stop="31374"/>
                    <exon start="31931" stop="31990"/>
                    <exon start="32948" stop="33073"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGFWIRVKNHSEEFASEKKNMATVSAFSVCRAKSHSRIPHSSSNAIPQLFPMQFLRCQSNRSIGGGYSCSSSSVKAKVPLRTTRICSATEEDGATAVAEEESAAPTTSDQTVSVSVSPSDVLTMFFQAEGTMNEAAIPSVTNSLEDIEGITGLKIQVVEGIASVELTKQTTIQATGVASSLVETIQGSGFKLQTLNLSFQDEEDIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30227" e_stop="30622"/>
            <exon e_start="31321" e_stop="32297"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30227" e_stop="30622" e_length="396"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30623" i_stop="31320" i_length="698"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="31321" e_stop="32297" e_length="977"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30227" stop="30622"/>
              <exon start="31321" stop="31365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30232" stop="30622"/>
              <exon start="31321" stop="31370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30235" stop="30587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31328" stop="32043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31757" stop="32297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31757" stop="32180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266510" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTTCCATTTGTAATCTGGCTTCTGGATAAGAGTGAAAAATCACTCTGAGGAATTTGCGTCGGAAAAAAAAAATATGGCGACCGTCTCAGCATTTTCCGTTTGTAGAGCCAAATCTCATTCTCGAATTCCCCATTCTTCATCTAATGCAATTCCCCAGCTTTTCCCAATGCAATTTCTTCGGTGTCAAAGCAACAGGAGCATTGGCGGTGGTTATTCTTGCTCTTCAAGTTCGGTGAAAGCGAAGGTACCTTTGAGAACTACCAGGATATGTTCTGCAACTGAGGAAGATGGTGCTACTGCTGTTGCCGAAGAAGAATCTGCTGCTCCCACTACATCTGATCAAACTGTTTCTGTTTCCGTCTCCCCTTCCGACGTTCTAACTATGTTCTTTCAG : GCAGAAGGAACAATGAATGAAGCTGCTATTCCTTCCGTGACTAACTCTTTAGAGGTAAATTGAGTGTGTAAAATTCAAAGCTTCTTCTGGTACATGCTAATTTGTTGACACTTCACAAAACACATTACTTGTCTGCTGCATTTGAGATACAATGTAGTAGCAGTTGCAGGGACTCTGAGTTTTTATTTTTCTGTGTAATATTAATGCTACTTGTGAATCACCAGAAGACTCGCTATTACATTGAAGAGTGAAATAAACAACACAGGTTGTTTACACTTTAAAGGACAAATTAAAGAAAGGAAAACGTTCTGATCTTTCTGAGGGATTTAAACTCTTTTTTTCTTGGAACTAGGCATATCTGAGATCTTATAATCTAGAATCAAAGAATCAGATACAGATATTCATCTGATTCTAGTTTTTCAGAAGCTGCAAGAGAGAACTATTGATTTTGTGAATGTTTGATGGAGAGCTATATCTCTTTCTCCACCTCTATCAAAACATCAGATTTTAGCTAATAATTGGAATTGAAGAATAATTGCAGGTTGCCCTAATTAAAAAAGAAAACAAGTAGTTGTAGTTTGACCTTTATCGTCTGTCCATATGTATACAGGATATTGAAGGCATTACAGGTCTCAAAATTCAAGTTGTCGAGGGCATTGCAAGTGTCGAGGTGATTCACATATATAATGCTTCTCTTACATTGACTTATTAGCCTATTCTGTTACAGGAAATTTCTTTGTAGAAAGTTTACAGCTCAATCAGCATAATGCACCTTAGAGATATATTAAAGTACTAAATTCTGAAGCATGCTTTAGGTTCCTTGTAGTTTCCTACATTCAATATGCAATATAGTGGACAACTTCCAGGTGGACTATCTTGTGCTGCCTTTTTGTGTTTGGAGTTTCTCTATAAATGATAGGAACAGTCTATCTAAATGAACGATATCCTTTAACTTTTCATGGTGAGGGAAAAATAAA</gDNA_template>
            <first_frame> S  F  H  L  *  S  G  F  W  I  R  V  K  N  H  S  E  E  F  A  S  E  K  K  N  M  A  T  V  S  A  F  S  V  C  R  A  K  S  H  S  R  I  P  H  S  S  S  N  A  I  P  Q  L  F  P  M  Q  F  L  R  C  Q  S  N  R  S  I  G  G  G  Y  S  C  S  S  S  S  V  K  A  K  V  P  L  R  T  T  R  I  C  S  A  T  E  E  D  G  A  T  A  V  A  E  E  E  S  A  A  P  T  T  S  D  Q  T  V  S  V  S  V  S  P  S  D  V  L  T  M  F  F  Q  :  A  E  G  T  M  N  E  A  A  I  P  S  V  T  N  S  L  E  V  N  *  V  C  K  I  Q  S  F  F  W  Y  M  L  I  C  *  H  F  T  K  H  I  T  C  L  L  H  L  R  Y  N  V  V  A  V  A  G  T  L  S  F  Y  F  S  V  *  Y  *  C  Y  L  *  I  T  R  R  L  A  I  T  L  K  S  E  I  N  N  T  G  C  L  H  F  K  G  Q  I  K  E  R  K  T  F  *  S  F  *  G  I  *  T  L  F  F  L  E  L  G  I  S  E  I  L  *  S  R  I  K  E  S  D  T  D  I  H  L  I  L  V  F  Q  K  L  Q  E  R  T  I  D  F  V  N  V  *  W  R  A  I  S  L  S  P  P  L  S  K  H  Q  I  L  A  N  N  W  N  *  R  I  I  A  G  C  P  N  *  K  R  K  Q  V  V  V  V  *  P  L  S  S  V  H  M  Y  T  G  Y  *  R  H  Y  R  S  Q  N  S  S  C  R  G  H  C  K  C  R  G  D  S  H  I  *  C  F  S  Y  I  D  L  L  A  Y  S  V  T  G  N  F  F  V  E  S  L  Q  L  N  Q  H  N  A  P  *  R  Y  I  K  V  L  N  S  E  A  C  F  R  F  L  V  V  S  Y  I  Q  Y  A  I  *  W  T  T  S  R  W  T  I  L  C  C  L  F  V  F  G  V  S  L  *  M  I  G  T  V  Y  L  N  E  R  Y  P  L  T  F  H  G  E  G  K  I   </first_frame>
            <second_frame>  P  S  I  C  N  L  A  S  G  *  E  *  K  I  T  L  R  N  L  R  R  K  K  K  I  W  R  P  S  Q  H  F  P  F  V  E  P  N  L  I  L  E  F  P  I  L  H  L  M  Q  F  P  S  F  S  Q  C  N  F  F  G  V  K  A  T  G  A  L  A  V  V  I  L  A  L  Q  V  R  *  K  R  R  Y  L  *  E  L  P  G  Y  V  L  Q  L  R  K  M  V  L  L  L  L  P  K  K  N  L  L  L  P  L  H  L  I  K  L  F  L  F  P  S  P  L  P  T  F  *  L  C  S  F  R :   Q  K  E  Q  *  M  K  L  L  F  L  P  *  L  T  L  *  R  *  I  E  C  V  K  F  K  A  S  S  G  T  C  *  F  V  D  T  S  Q  N  T  L  L  V  C  C  I  *  D  T  M  *  *  Q  L  Q  G  L  *  V  F  I  F  L  C  N  I  N  A  T  C  E  S  P  E  D  S  L  L  H  *  R  V  K  *  T  T  Q  V  V  Y  T  L  K  D  K  L  K  K  G  K  R  S  D  L  S  E  G  F  K  L  F  F  S  W  N  *  A  Y  L  R  S  Y  N  L  E  S  K  N  Q  I  Q  I  F  I  *  F  *  F  F  R  S  C  K  R  E  L  L  I  L  *  M  F  D  G  E  L  Y  L  F  L  H  L  Y  Q  N  I  R  F  *  L  I  I  G  I  E  E  *  L  Q  V  A  L  I  K  K  E  N  K  *  L  *  F  D  L  Y  R  L  S  I  C  I  Q  D  I  E  G  I  T  G  L  K  I  Q  V  V  E  G  I  A  S  V  E  V  I  H  I  Y  N  A  S  L  T  L  T  Y  *  P  I  L  L  Q  E  I  S  L  *  K  V  Y  S  S  I  S  I  M  H  L  R  D  I  L  K  Y  *  I  L  K  H  A  L  G  S  L  *  F  P  T  F  N  M  Q  Y  S  G  Q  L  P  G  G  L  S  C  A  A  F  L  C  L  E  F  L  Y  K  *  *  E  Q  S  I  *  M  N  D  I  L  *  L  F  M  V  R  E  K  *  </second_frame>
            <third_frame>   L  P  F  V  I  W  L  L  D  K  S  E  K  S  L  *  G  I  C  V  G  K  K  K  Y  G  D  R  L  S  I  F  R  L  *  S  Q  I  S  F  S  N  S  P  F  F  I  *  C  N  S  P  A  F  P  N  A  I  S  S  V  S  K  Q  Q  E  H  W  R  W  L  F  L  L  F  K  F  G  E  S  E  G  T  F  E  N  Y  Q  D  M  F  C  N  *  G  R  W  C  Y  C  C  C  R  R  R  I  C  C  S  H  Y  I  *  S  N  C  F  C  F  R  L  P  F  R  R  S  N  Y  V  L  S   : G  R  R  N  N  E  *  S  C  Y  S  F  R  D  *  L  F  R  G  K  L  S  V  *  N  S  K  L  L  L  V  H  A  N  L  L  T  L  H  K  T  H  Y  L  S  A  A  F  E  I  Q  C  S  S  S  C  R  D  S  E  F  L  F  F  C  V  I  L  M  L  L  V  N  H  Q  K  T  R  Y  Y  I  E  E  *  N  K  Q  H  R  L  F  T  L  *  R  T  N  *  R  K  E  N  V  L  I  F  L  R  D  L  N  S  F  F  L  G  T  R  H  I  *  D  L  I  I  *  N  Q  R  I  R  Y  R  Y  S  S  D  S  S  F  S  E  A  A  R  E  N  Y  *  F  C  E  C  L  M  E  S  Y  I  S  F  S  T  S  I  K  T  S  D  F  S  *  *  L  E  L  K  N  N  C  R  L  P  *  L  K  K  K  T  S  S  C  S  L  T  F  I  V  C  P  Y  V  Y  R  I  L  K  A  L  Q  V  S  K  F  K  L  S  R  A  L  Q  V  S  R  *  F  T  Y  I  M  L  L  L  H  *  L  I  S  L  F  C  Y  R  K  F  L  C  R  K  F  T  A  Q  S  A  *  C  T  L  E  I  Y  *  S  T  K  F  *  S  M  L  *  V  P  C  S  F  L  H  S  I  C  N  I  V  D  N  F  Q  V  D  Y  L  V  L  P  F  C  V  W  S  F  S  I  N  D  R  N  S  L  S  K  *  T  I  S  F  N  F  S  W  *  G  K  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30242" stop="30622"/>
                    <exon start="31321" stop="31383"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGFWIRVKNHSEEFASEKKNMATVSAFSVCRAKSHSRIPHSSSNAIPQLFPMQFLRCQSNRSIGGGYSCSSSSVKAKVPLRTTRICSATEEDGATAVAEEESAAPTTSDQTVSVSVSPSDVLTMFFQAEGTMNEAAIPSVTNSLEVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="36679" PGL_stop="39148"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36679" e_stop="36703"/>
            <exon e_start="36808" e_stop="36882"/>
            <exon e_start="37034" e_stop="37100"/>
            <exon e_start="37482" e_stop="37804"/>
            <exon e_start="39113" e_stop="39148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.881" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.983" e_score="0.973"/>
          <exon-intron don_prob="0.990" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="0.972"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36679" e_stop="36703" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.881" acc_prob="0.966">
            <gDNA_intron_boundary i_start="36704" i_stop="36807" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="36808" e_stop="36882" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.983">
            <gDNA_intron_boundary i_start="36883" i_stop="37033" i_length="151"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37034" e_stop="37100" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.854">
            <gDNA_intron_boundary i_start="37101" i_stop="37481" i_length="381"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="37482" e_stop="37804" e_length="323"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="37805" i_stop="39112" i_length="1308"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39113" e_stop="39148" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36679" stop="36703"/>
              <exon start="36808" stop="36882"/>
              <exon start="37034" stop="37100"/>
              <exon start="37482" stop="37804"/>
              <exon start="39113" stop="39148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAAGCTGACATAGCACCACTGATG : TCCACTCTTCTTGGTCTGCCATGTCCTATCAACTCAGTTGGCAATCTGCCTCTTCAGTACATGAATCTGAACAAG : GCAGAAGAAGTTGAAGCTGTGCTGGCCAATACGAAGCAAATCCTCAATCAGTTCCTTCGAAAGTCAC : AGTTAAAGCAGTCGACCTCATTATACATCAAGCCTTTCAAGCCCTTGGCTAGTTATTCATCACTATTGCGTGAAATTGAGCAACTGATTTCTCTCAAAGAGTATGAAACTGCAGTGAAATTATCTGAACATCTTAGGAGCTTGGCACTTCAAGGACTTCACTATTTTCAGACATATGATTGGCTGATGCTGATGACTGTAATCACTCTTGGCTATGTTGGTTGGATGATCTATGTCATACTCCATATCTTGCAATCTTATACATCCCTACCTGCAAATATTTTTAGCAAGGACCAAGTGCCTAATCCAAGAAGTACAGTTAAG : ATACATCTTTTAGGAGGGTTGTTGATGGGAGTAGCG</gDNA_template>
            <first_frame> S  S  *  H  S  T  T  D   : V  H  S  S  W  S  A  M  S  Y  Q  L  S  W  Q  S  A  S  S  V  H  E  S  E  Q   : G  R  R  S  *  S  C  A  G  Q  Y  E  A  N  P  Q  S  V  P  S  K  V  T :   V  K  A  V  D  L  I  I  H  Q  A  F  Q  A  L  G  *  L  F  I  T  I  A  *  N  *  A  T  D  F  S  Q  R  V  *  N  C  S  E  I  I  *  T  S  *  E  L  G  T  S  R  T  S  L  F  S  D  I  *  L  A  D  A  D  D  C  N  H  S  W  L  C  W  L  D  D  L  C  H  T  P  Y  L  A  I  L  Y  I  P  T  C  K  Y  F  *  Q  G  P  S  A  *  S  K  K  Y  S  *   : D  T  S  F  R  R  V  V  D  G  S  S  </first_frame>
            <second_frame>  Q  A  D  I  A  P  L  M  :  S  T  L  L  G  L  P  C  P  I  N  S  V  G  N  L  P  L  Q  Y  M  N  L  N  K  :  A  E  E  V  E  A  V  L  A  N  T  K  Q  I  L  N  Q  F  L  R  K  S   : Q  L  K  Q  S  T  S  L  Y  I  K  P  F  K  P  L  A  S  Y  S  S  L  L  R  E  I  E  Q  L  I  S  L  K  E  Y  E  T  A  V  K  L  S  E  H  L  R  S  L  A  L  Q  G  L  H  Y  F  Q  T  Y  D  W  L  M  L  M  T  V  I  T  L  G  Y  V  G  W  M  I  Y  V  I  L  H  I  L  Q  S  Y  T  S  L  P  A  N  I  F  S  K  D  Q  V  P  N  P  R  S  T  V  K  :  I  H  L  L  G  G  L  L  M  G  V  A </second_frame>
            <third_frame>   K  L  T  *  H  H  *  C :   P  L  F  L  V  C  H  V  L  S  T  Q  L  A  I  C  L  F  S  T  *  I  *  T  R :   Q  K  K  L  K  L  C  W  P  I  R  S  K  S  S  I  S  S  F  E  S  H  :  S  *  S  S  R  P  H  Y  T  S  S  L  S  S  P  W  L  V  I  H  H  Y  C  V  K  L  S  N  *  F  L  S  K  S  M  K  L  Q  *  N  Y  L  N  I  L  G  A  W  H  F  K  D  F  T  I  F  R  H  M  I  G  *  C  *  *  L  *  S  L  L  A  M  L  V  G  *  S  M  S  Y  S  I  S  C  N  L  I  H  P  Y  L  Q  I  F  L  A  R  T  K  C  L  I  Q  E  V  Q  L  R :   Y  I  F  *  E  G  C  *  W  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36680" stop="36703"/>
                    <exon start="36808" stop="36882"/>
                    <exon start="37034" stop="37100"/>
                    <exon start="37482" stop="37804"/>
                    <exon start="39113" stop="39148"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QADIAPLMSTLLGLPCPINSVGNLPLQYMNLNKAEEVEAVLANTKQILNQFLRKSQLKQSTSLYIKPFKPLASYSSLLREIEQLISLKEYETAVKLSEHLRSLALQGLHYFQTYDWLMLMTVITLGYVGWMIYVILHILQSYTSLPANIFSKDQVPNPRSTVKIHLLGGLLMGVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="39986" PGL_stop="43195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39986" e_stop="40063"/>
            <exon e_start="41074" e_stop="41176"/>
            <exon e_start="41268" e_stop="41436"/>
            <exon e_start="41618" e_stop="41716"/>
            <exon e_start="41815" e_stop="41873"/>
            <exon e_start="42783" e_stop="42888"/>
            <exon e_start="43129" e_stop="43195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.969" e_score="0.942"/>
          <exon-intron don_prob="0.465" acc_prob="0.419" e_score="1.000"/>
          <exon-intron don_prob="0.894" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.920" e_score="0.981"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39986" e_stop="40063" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.963">
            <gDNA_intron_boundary i_start="40064" i_stop="41073" i_length="1010"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="41074" e_stop="41176" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="0.969">
            <gDNA_intron_boundary i_start="41177" i_stop="41267" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41268" e_stop="41436" e_length="169"/>
          </exon>
          <intron i_serial="3" don_prob="0.465" acc_prob="0.419">
            <gDNA_intron_boundary i_start="41437" i_stop="41617" i_length="181"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41618" e_stop="41716" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.894" acc_prob="0.913">
            <gDNA_intron_boundary i_start="41717" i_stop="41814" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41815" e_stop="41873" e_length="59"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="41874" i_stop="42782" i_length="909"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="42783" e_stop="42888" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.920">
            <gDNA_intron_boundary i_start="42889" i_stop="43128" i_length="240"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43129" e_stop="43195" e_length="67"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39986" stop="40063"/>
              <exon start="41074" stop="41176"/>
              <exon start="41268" stop="41436"/>
              <exon start="41618" stop="41716"/>
              <exon start="41815" stop="41873"/>
              <exon start="42783" stop="42888"/>
              <exon start="43129" stop="43195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342211" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGCTTTCAACTATTCATAGAACAGAGAAGCAGGAATTATTAGTCCTCCACCAACTGTTGAATTGGTCCATAGCTG : GCTTCTCGATGATACTCCCACTCTTTTCAGCTACTGGTCTCTTATCCAGGCTGACTTCCATTTTCCTTGGCGTTGCACCTCCCTTCCTGCTTCTATCAATCGG : TTATGAAGCAGTCTTCTATGGTGCTCTCAGTCTTGCACTTATAGCATGGATACTGGCGGAAAATGCTTATCTCCATATAAGCAAGTTCAGATCATCAGCTCCAGTCAAATCCATGGAGGATGATAATAGGTGTCTGGAGTTATCCGATATGAGGATCCCATTAACTTTT : ATGGTCTTTTTCAATATTGCATTCTTTGGAACTGGTAATTTTGCAAGTATTGCAAGTTTTGAGATCTCCTCCGTGTATCGATTCATTACAATTTTCAGT : CCTTTTCTGATGGCGGCATTACTTATTTTCAAGCTGTTGATACCATTCATACTTGTCAT : ATGTGCGTTCAGTGCAATCACAAAATTGGTGCAAGTTCCATTGTTGGGATGCTATTTTCTGGTGATCTTGTGCTCTGATGTAATGACAATCCATTTCTTCTTCCTG : GTCCGAAATAAAGGAAGCTGGATGGAAATTGGCAACAGCATTAGCCATTTCGGAATTATGAGTGCTC</gDNA_template>
            <first_frame> F  G  F  Q  L  F  I  E  Q  R  S  R  N  Y  *  S  S  T  N  C  *  I  G  P  *  L  :  A  S  R  *  Y  S  H  S  F  Q  L  L  V  S  Y  P  G  *  L  P  F  S  L  A  L  H  L  P  S  C  F  Y  Q  S   : V  M  K  Q  S  S  M  V  L  S  V  L  H  L  *  H  G  Y  W  R  K  M  L  I  S  I  *  A  S  S  D  H  Q  L  Q  S  N  P  W  R  M  I  I  G  V  W  S  Y  P  I  *  G  S  H  *  L  L :   W  S  F  S  I  L  H  S  L  E  L  V  I  L  Q  V  L  Q  V  L  R  S  P  P  C  I  D  S  L  Q  F  S  V :   L  F  *  W  R  H  Y  L  F  S  S  C  *  Y  H  S  Y  L  S   : Y  V  R  S  V  Q  S  Q  N  W  C  K  F  H  C  W  D  A  I  F  W  *  S  C  A  L  M  *  *  Q  S  I  S  S  S  W :   S  E  I  K  E  A  G  W  K  L  A  T  A  L  A  I  S  E  L  *  V  L </first_frame>
            <second_frame>  L  A  F  N  Y  S  *  N  R  E  A  G  I  I  S  P  P  P  T  V  E  L  V  H  S  W :   L  L  D  D  T  P  T  L  F  S  Y  W  S  L  I  Q  A  D  F  H  F  P  W  R  C  T  S  L  P  A  S  I  N  R  :  L  *  S  S  L  L  W  C  S  Q  S  C  T  Y  S  M  D  T  G  G  K  C  L  S  P  Y  K  Q  V  Q  I  I  S  S  S  Q  I  H  G  G  *  *  *  V  S  G  V  I  R  Y  E  D  P  I  N  F   : Y  G  L  F  Q  Y  C  I  L  W  N  W  *  F  C  K  Y  C  K  F  *  D  L  L  R  V  S  I  H  Y  N  F  Q   : S  F  S  D  G  G  I  T  Y  F  Q  A  V  D  T  I  H  T  C  H  :  M  C  V  Q  C  N  H  K  I  G  A  S  S  I  V  G  M  L  F  S  G  D  L  V  L  *  C  N  D  N  P  F  L  L  P   : G  P  K  *  R  K  L  D  G  N  W  Q  Q  H  *  P  F  R  N  Y  E  C   </second_frame>
            <third_frame>   W  L  S  T  I  H  R  T  E  K  Q  E  L  L  V  L  H  Q  L  L  N  W  S  I  A   : G  F  S  M  I  L  P  L  F  S  A  T  G  L  L  S  R  L  T  S  I  F  L  G  V  A  P  P  F  L  L  L  S  I  G :   Y  E  A  V  F  Y  G  A  L  S  L  A  L  I  A  W  I  L  A  E  N  A  Y  L  H  I  S  K  F  R  S  S  A  P  V  K  S  M  E  D  D  N  R  C  L  E  L  S  D  M  R  I  P  L  T  F  :  M  V  F  F  N  I  A  F  F  G  T  G  N  F  A  S  I  A  S  F  E  I  S  S  V  Y  R  F  I  T  I  F  S  :  P  F  L  M  A  A  L  L  I  F  K  L  L  I  P  F  I  L  V  I :   C  A  F  S  A  I  T  K  L  V  Q  V  P  L  L  G  C  Y  F  L  V  I  L  C  S  D  V  M  T  I  H  F  F  F  L  :  V  R  N  K  G  S  W  M  E  I  G  N  S  I  S  H  F  G  I  M  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39988" stop="40063"/>
                    <exon start="41074" stop="41176"/>
                    <exon start="41268" stop="41436"/>
                    <exon start="41618" stop="41716"/>
                    <exon start="41815" stop="41873"/>
                    <exon start="42783" stop="42888"/>
                    <exon start="43129" stop="43194"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLSTIHRTEKQELLVLHQLLNWSIAGFSMILPLFSATGLLSRLTSIFLGVAPPFLLLSIGYEAVFYGALSLALIAWILAENAYLHISKFRSSAPVKSMEDDNRCLELSDMRIPLTFMVFFNIAFFGTGNFASIASFEISSVYRFITIFSPFLMAALLIFKLLIPFILVICAFSAITKLVQVPLLGCYFLVILCSDVMTIHFFFLVRNKGSWMEIGNSISHFGIMSA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="51413" PGL_stop="52836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51413" e_stop="52836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="51413" e_stop="52836" e_length="1424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51413" stop="51756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51474" stop="52288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51476" stop="52348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51502" stop="52264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51511" stop="51987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51524" stop="52047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51547" stop="52185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51556" stop="52355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51577" stop="52257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51731" stop="52337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51868" stop="52337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52062" stop="52702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52063" stop="52707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52255" stop="52663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52499" stop="52836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52499" stop="52836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAATAAAAAATAAAAACATATATCATTGAATGAAGAGAAGTGAGAAATATGAAGACCCCATTGAAGCCCTCCAGCTATTTCCCATCCCCCATTTACCTATTTCCCTCTCCTTTTTTTAGCCATTTTTTTCTATTAACTTTCCCTTCTCAAACACTGAGCTGAAAAACAGAGCAAATGGGTTTAACTCTTCTGCTTTTTCTTTGCTTCTCTGTTATCTTAACTCCTTCTTTATCACAGCACCATTCGCCGCTAAATACTGCTTATTACCGGAGATCATGTCCAAGATTTGAACAAATTATGCAAGAAACCACTACAAACAAACAGATCACTTCACCTACTACCGCCGCCGCTACCCTCCGTCTCTTCTTCCACGACTGCTTCGTCGGCGGCTGCGACGCGTCCATCCTCGTCTCCTCCACTCCTTTCAACAAAGCTGAACGTGACGCAGAAATCAACCTATCACTCCCCGGCGATGGGTTCGATGTAGTCGTACGCGCCAAAACGGCGCTTGAACTTGCTTGCCCCGGCGTTGTCTCTTGCTCCGACATTCTCGCCGTCGCTGCCCGGAATCTCGTTGTTCAAACCGGAGGCCCGTTTTATCCAGTTAATTTGGGCCGTAAAGATTCTTTTACTTCTAAAGCTTCGTTGGTTGAAGGAAATCTGCCCCGACCCACAATGTCGATGGATCAAATCATACAAATTTTCGGGTCAAGAGGGTTTTCGGTACCGGAAATGGTAGCGTTATCCGGTGCTCACACAATTGGGTTTTCCCATTGTAAAGAGTTCAGCTCAAATCTTTACAATTACAACAAAACTTCCCAATATGATCCTTCTTACAATCCCAGATTTGCTCAAGCTTTGAGAAATGCTTGTAATAATTTCCAGAAAGATCCAACATTGTCCGTTTTCAACGACATCATGACTCCGAATAAGTTTGACAACATGTATTACCAGAACTTACCCAAGGGTTTGGGTCTGTTGTCTTCGGACCGGGGTCTGTTTTCAGATCCGAGGACAAGAGTTCATGTTGAAGAGTATATTAGAGATCAAAATGCATTCTTTAAGGCGTTTGCTTCAGCAATGCAGAAGCTAAGTGATCATGGTGTTAAAATTGGGAGAAGTGGTGAGATCAGACACAGATGTGATGCTTTCAACAATTAAACTATTTGAGGGGTATTGATTATGTTACTGTACGTTCGAATTTTTTGTTGAATTTAATCACTCACAAGACGAAAGTAAAACTTATAATATGTATACAATGTTTTTTACTATCATTTTTATTAAGATTACAAGGCTCTGCTTCAGTTCTGCTTTTAGAACAACTACTACTACTACTACTTGTGATTAGTGTGTGTTGAGATGCAGGTAAGAGGCTGTTTGTTCGTCGAATTTGATTCAATAAGAAATGAAACCGTAAATAAA</gDNA_template>
            <first_frame> L  N  K  K  *  K  H  I  S  L  N  E  E  K  *  E  I  *  R  P  H  *  S  P  P  A  I  S  H  P  P  F  T  Y  F  P  L  L  F  L  A  I  F  F  Y  *  L  S  L  L  K  H  *  A  E  K  Q  S  K  W  V  *  L  F  C  F  F  F  A  S  L  L  S  *  L  L  L  Y  H  S  T  I  R  R  *  I  L  L  I  T  G  D  H  V  Q  D  L  N  K  L  C  K  K  P  L  Q  T  N  R  S  L  H  L  L  P  P  P  L  P  S  V  S  S  S  T  T  A  S  S  A  A  A  T  R  P  S  S  S  P  P  L  L  S  T  K  L  N  V  T  Q  K  S  T  Y  H  S  P  A  M  G  S  M  *  S  Y  A  P  K  R  R  L  N  L  L  A  P  A  L  S  L  A  P  T  F  S  P  S  L  P  G  I  S  L  F  K  P  E  A  R  F  I  Q  L  I  W  A  V  K  I  L  L  L  L  K  L  R  W  L  K  E  I  C  P  D  P  Q  C  R  W  I  K  S  Y  K  F  S  G  Q  E  G  F  R  Y  R  K  W  *  R  Y  P  V  L  T  Q  L  G  F  P  I  V  K  S  S  A  Q  I  F  T  I  T  T  K  L  P  N  M  I  L  L  T  I  P  D  L  L  K  L  *  E  M  L  V  I  I  S  R  K  I  Q  H  C  P  F  S  T  T  S  *  L  R  I  S  L  T  T  C  I  T  R  T  Y  P  R  V  W  V  C  C  L  R  T  G  V  C  F  Q  I  R  G  Q  E  F  M  L  K  S  I  L  E  I  K  M  H  S  L  R  R  L  L  Q  Q  C  R  S  *  V  I  M  V  L  K  L  G  E  V  V  R  S  D  T  D  V  M  L  S  T  I  K  L  F  E  G  Y  *  L  C  Y  C  T  F  E  F  F  V  E  F  N  H  S  Q  D  E  S  K  T  Y  N  M  Y  T  M  F  F  T  I  I  F  I  K  I  T  R  L  C  F  S  S  A  F  R  T  T  T  T  T  T  T  C  D  *  C  V  L  R  C  R  *  E  A  V  C  S  S  N  L  I  Q  *  E  M  K  P  *  I   </first_frame>
            <second_frame>  *  I  K  N  K  N  I  Y  H  *  M  K  R  S  E  K  Y  E  D  P  I  E  A  L  Q  L  F  P  I  P  H  L  P  I  S  L  S  F  F  *  P  F  F  S  I  N  F  P  F  S  N  T  E  L  K  N  R  A  N  G  F  N  S  S  A  F  S  L  L  L  C  Y  L  N  S  F  F  I  T  A  P  F  A  A  K  Y  C  L  L  P  E  I  M  S  K  I  *  T  N  Y  A  R  N  H  Y  K  Q  T  D  H  F  T  Y  Y  R  R  R  Y  P  P  S  L  L  P  R  L  L  R  R  R  L  R  R  V  H  P  R  L  L  H  S  F  Q  Q  S  *  T  *  R  R  N  Q  P  I  T  P  R  R  W  V  R  C  S  R  T  R  Q  N  G  A  *  T  C  L  P  R  R  C  L  L  L  R  H  S  R  R  R  C  P  E  S  R  C  S  N  R  R  P  V  L  S  S  *  F  G  P  *  R  F  F  Y  F  *  S  F  V  G  *  R  K  S  A  P  T  H  N  V  D  G  S  N  H  T  N  F  R  V  K  R  V  F  G  T  G  N  G  S  V  I  R  C  S  H  N  W  V  F  P  L  *  R  V  Q  L  K  S  L  Q  L  Q  Q  N  F  P  I  *  S  F  L  Q  S  Q  I  C  S  S  F  E  K  C  L  *  *  F  P  E  R  S  N  I  V  R  F  Q  R  H  H  D  S  E  *  V  *  Q  H  V  L  P  E  L  T  Q  G  F  G  S  V  V  F  G  P  G  S  V  F  R  S  E  D  K  S  S  C  *  R  V  Y  *  R  S  K  C  I  L  *  G  V  C  F  S  N  A  E  A  K  *  S  W  C  *  N  W  E  K  W  *  D  Q  T  Q  M  *  C  F  Q  Q  L  N  Y  L  R  G  I  D  Y  V  T  V  R  S  N  F  L  L  N  L  I  T  H  K  T  K  V  K  L  I  I  C  I  Q  C  F  L  L  S  F  L  L  R  L  Q  G  S  A  S  V  L  L  L  E  Q  L  L  L  L  L  L  V  I  S  V  C  *  D  A  G  K  R  L  F  V  R  R  I  *  F  N  K  K  *  N  R  K  *  </second_frame>
            <third_frame>   K  *  K  I  K  T  Y  I  I  E  *  R  E  V  R  N  M  K  T  P  L  K  P  S  S  Y  F  P  S  P  I  Y  L  F  P  S  P  F  F  S  H  F  F  L  L  T  F  P  S  Q  T  L  S  *  K  T  E  Q  M  G  L  T  L  L  L  F  L  C  F  S  V  I  L  T  P  S  L  S  Q  H  H  S  P  L  N  T  A  Y  Y  R  R  S  C  P  R  F  E  Q  I  M  Q  E  T  T  T  N  K  Q  I  T  S  P  T  T  A  A  A  T  L  R  L  F  F  H  D  C  F  V  G  G  C  D  A  S  I  L  V  S  S  T  P  F  N  K  A  E  R  D  A  E  I  N  L  S  L  P  G  D  G  F  D  V  V  V  R  A  K  T  A  L  E  L  A  C  P  G  V  V  S  C  S  D  I  L  A  V  A  A  R  N  L  V  V  Q  T  G  G  P  F  Y  P  V  N  L  G  R  K  D  S  F  T  S  K  A  S  L  V  E  G  N  L  P  R  P  T  M  S  M  D  Q  I  I  Q  I  F  G  S  R  G  F  S  V  P  E  M  V  A  L  S  G  A  H  T  I  G  F  S  H  C  K  E  F  S  S  N  L  Y  N  Y  N  K  T  S  Q  Y  D  P  S  Y  N  P  R  F  A  Q  A  L  R  N  A  C  N  N  F  Q  K  D  P  T  L  S  V  F  N  D  I  M  T  P  N  K  F  D  N  M  Y  Y  Q  N  L  P  K  G  L  G  L  L  S  S  D  R  G  L  F  S  D  P  R  T  R  V  H  V  E  E  Y  I  R  D  Q  N  A  F  F  K  A  F  A  S  A  M  Q  K  L  S  D  H  G  V  K  I  G  R  S  G  E  I  R  H  R  C  D  A  F  N  N  *  T  I  *  G  V  L  I  M  L  L  Y  V  R  I  F  C  *  I  *  S  L  T  R  R  K  *  N  L  *  Y  V  Y  N  V  F  Y  Y  H  F  Y  *  D  Y  K  A  L  L  Q  F  C  F  *  N  N  Y  Y  Y  Y  Y  L  *  L  V  C  V  E  M  Q  V  R  G  C  L  F  V  E  F  D  S  I  R  N  E  T  V  N  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51577" stop="52575"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTEQMGLTLLLFLCFSVILTPSLSQHHSPLNTAYYRRSCPRFEQIMQETTTNKQITSPTTAAATLRLFFHDCFVGGCDASILVSSTPFNKAERDAEINLSLPGDGFDVVVRAKTALELACPGVVSCSDILAVAARNLVVQTGGPFYPVNLGRKDSFTSKASLVEGNLPRPTMSMDQIIQIFGSRGFSVPEMVALSGAHTIGFSHCKEFSSNLYNYNKTSQYDPSYNPRFAQALRNACNNFQKDPTLSVFNDIMTPNKFDNMYYQNLPKGLGLLSSDRGLFSDPRTRVHVEEYIRDQNAFFKAFASAMQKLSDHGVKIGRSGEIRHRCDAFNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52560" stop="52772"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFQQLNYLRGIDYVTVRSNFLLNLITHKTKVKLIICIQCFLLSFLLRLQGSASVLLLEQLLLLLLVISVC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="53789" PGL_stop="54398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53789" e_stop="54398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="53789" e_stop="54398" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53789" stop="54398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241773" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATTGTGTCAATGGTACACTCTCTTCATTCTTGCTTTCACTGTTTGAGCATCAAGATGCTCAAAAATGAAAAACAACTCTGGAGTTCATTGCATTTGCTCTGCAGCAATGTTTATTGCAATGCAGACCTTAAAGAAACATGAGAATAACAATTCTCTAACAACTTCCGCAGTTGCAGCAATCAATCAACTCCAGCATAAATACCAAATTACTAGACAGCGGCTTGTGGAAGCCACGAACAGTGCATAGAATAAGCCTCAGGCACACAAGAAAGTGAAAATAGCATTGCTTGAAGAGTATTAGGAGACAATGAGTTCATGTTAAAGACAGCCTCTTTTCTCCAAAAACTAAAACACACTGTTCAGAATCTTTCTTTACACCTCCAACATTATTTACCATGTCAACTGTCACATGACCTCAGAAGACACGACGAGCAAAACCAAAACCAAAATCATGCTATCCGAAGCTATGCAAAGAGAAAACCGTGCCTAATTACAAGCCATTTCTCAGAAAAAGGAATGAAATAGCATACAGTGAAGAAACAGAAACAAACAAGAGCTATGAAGAACTTATCCGTGCTTGACTGATATCATCATCCGAATTAAGCAAC</gDNA_template>
            <first_frame> R  L  C  Q  W  Y  T  L  F  I  L  A  F  T  V  *  A  S  R  C  S  K  M  K  N  N  S  G  V  H  C  I  C  S  A  A  M  F  I  A  M  Q  T  L  K  K  H  E  N  N  N  S  L  T  T  S  A  V  A  A  I  N  Q  L  Q  H  K  Y  Q  I  T  R  Q  R  L  V  E  A  T  N  S  A  *  N  K  P  Q  A  H  K  K  V  K  I  A  L  L  E  E  Y  *  E  T  M  S  S  C  *  R  Q  P  L  F  S  K  N  *  N  T  L  F  R  I  F  L  Y  T  S  N  I  I  Y  H  V  N  C  H  M  T  S  E  D  T  T  S  K  T  K  T  K  I  M  L  S  E  A  M  Q  R  E  N  R  A  *  L  Q  A  I  S  Q  K  K  E  *  N  S  I  Q  *  R  N  R  N  K  Q  E  L  *  R  T  Y  P  C  L  T  D  I  I  I  R  I  K  Q  </first_frame>
            <second_frame>  D  C  V  N  G  T  L  S  S  F  L  L  S  L  F  E  H  Q  D  A  Q  K  *  K  T  T  L  E  F  I  A  F  A  L  Q  Q  C  L  L  Q  C  R  P  *  R  N  M  R  I  T  I  L  *  Q  L  P  Q  L  Q  Q  S  I  N  S  S  I  N  T  K  L  L  D  S  G  L  W  K  P  R  T  V  H  R  I  S  L  R  H  T  R  K  *  K  *  H  C  L  K  S  I  R  R  Q  *  V  H  V  K  D  S  L  F  S  P  K  T  K  T  H  C  S  E  S  F  F  T  P  P  T  L  F  T  M  S  T  V  T  *  P  Q  K  T  R  R  A  K  P  K  P  K  S  C  Y  P  K  L  C  K  E  K  T  V  P  N  Y  K  P  F  L  R  K  R  N  E  I  A  Y  S  E  E  T  E  T  N  K  S  Y  E  E  L  I  R  A  *  L  I  S  S  S  E  L  S  N </second_frame>
            <third_frame>   I  V  S  M  V  H  S  L  H  S  C  F  H  C  L  S  I  K  M  L  K  N  E  K  Q  L  W  S  S  L  H  L  L  C  S  N  V  Y  C  N  A  D  L  K  E  T  *  E  *  Q  F  S  N  N  F  R  S  C  S  N  Q  S  T  P  A  *  I  P  N  Y  *  T  A  A  C  G  S  H  E  Q  C  I  E  *  A  S  G  T  Q  E  S  E  N  S  I  A  *  R  V  L  G  D  N  E  F  M  L  K  T  A  S  F  L  Q  K  L  K  H  T  V  Q  N  L  S  L  H  L  Q  H  Y  L  P  C  Q  L  S  H  D  L  R  R  H  D  E  Q  N  Q  N  Q  N  H  A  I  R  S  Y  A  K  R  K  P  C  L  I  T  S  H  F  S  E  K  G  M  K  *  H  T  V  K  K  Q  K  Q  T  R  A  M  K  N  L  S  V  L  D  *  Y  H  H  P  N  *  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54082" stop="54315"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVLGDNEFMLKTASFLQKLKHTVQNLSLHLQHYLPCQLSHDLRRHDEQNQNQNHAIRSYAKRKPCLITSHFSEKGMK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53837" stop="54037"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASRCSKMKNNSGVHCICSAAMFIAMQTLKKHENNNSLTTSAVAAINQLQHKYQITRQRLVEATNSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="54946" PGL_stop="54096"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54946" e_stop="54096"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="54946" e_stop="54096" e_length="851"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54946" stop="54241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54892" stop="54096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCAGTTTAGCGTTAGATGATCAGAACAAAACTGCAATTGGGGTATTAGGAGCTCTGCCTCCACTTCTTCATGCCCTTCGATCTGAATCGGAACGAACTAGGCATGATTCGGCTCTGGCTCTATATCACCTCACTTTAGTTCAGAGTAACAGGGCTAAATTGGTGAAACTCGGGGCGGTTCAGGCATTACTAGGCATGGTTAAAACGGGTCATATGATGGGTCGGATTCTGTTGATACTTTGTAACCTGGCTGCGAGCTCTGAAGGGAGAGCAGCAATGCTTGATGGGGGTGCAGTGGAGTGTTTTGTATGTATGTTGAGAAAGGGAGAGTTTGAATCGGAGTCGACTCGTGAGAATTGTCTTGCTGCATTATATGGACTTAGTCATGGTGGCCTTAGGTTTAAAGGGTTGGCAAAAGAGGCTGCTGCGGAGGAGCTGTTGATACAAGTTGAGGAAATGGGAAGTGAAAGGGCCAAGGATAAAGTTAGAAAGATATTGGAGGTTTTGAGGCAGAAGGATGAAGAGGAGGAAGTTGATTGGGAGAAGTTGCTTAATTCGGATGATGATATCAGTCAAGCACGGATAAGTTCTTCATAGCTCTTGTTTGTTTCTGTTTCTTCACTGTATGCTATTTCATTCCTTTTTCTGAGAAATGGCTTGTAATTAGGCACGGTTTTCTCTTTGCATAGCTTCGGATAGCATGATTTTGGTTTTGGTTTTGCTCGTCGTGTCTTCTGAGGTCATGTGACAGTTGACATGGTAAATAATGTTGGAGGTGTAAAGAAAGATTCTGAACAGTGTGTTTTAGTTTTTGGAGAAAAGAGGCTGTCTTTAACATGAACTCATTG</gDNA_template>
            <first_frame> L  F  S  L  A  L  D  D  Q  N  K  T  A  I  G  V  L  G  A  L  P  P  L  L  H  A  L  R  S  E  S  E  R  T  R  H  D  S  A  L  A  L  Y  H  L  T  L  V  Q  S  N  R  A  K  L  V  K  L  G  A  V  Q  A  L  L  G  M  V  K  T  G  H  M  M  G  R  I  L  L  I  L  C  N  L  A  A  S  S  E  G  R  A  A  M  L  D  G  G  A  V  E  C  F  V  C  M  L  R  K  G  E  F  E  S  E  S  T  R  E  N  C  L  A  A  L  Y  G  L  S  H  G  G  L  R  F  K  G  L  A  K  E  A  A  A  E  E  L  L  I  Q  V  E  E  M  G  S  E  R  A  K  D  K  V  R  K  I  L  E  V  L  R  Q  K  D  E  E  E  E  V  D  W  E  K  L  L  N  S  D  D  D  I  S  Q  A  R  I  S  S  S  *  L  L  F  V  S  V  S  S  L  Y  A  I  S  F  L  F  L  R  N  G  L  *  L  G  T  V  F  S  L  H  S  F  G  *  H  D  F  G  F  G  F  A  R  R  V  F  *  G  H  V  T  V  D  M  V  N  N  V  G  G  V  K  K  D  S  E  Q  C  V  L  V  F  G  E  K  R  L  S  L  T  *  T  H   </first_frame>
            <second_frame>  F  S  V  *  R  *  M  I  R  T  K  L  Q  L  G  Y  *  E  L  C  L  H  F  F  M  P  F  D  L  N  R  N  E  L  G  M  I  R  L  W  L  Y  I  T  S  L  *  F  R  V  T  G  L  N  W  *  N  S  G  R  F  R  H  Y  *  A  W  L  K  R  V  I  *  W  V  G  F  C  *  Y  F  V  T  W  L  R  A  L  K  G  E  Q  Q  C  L  M  G  V  Q  W  S  V  L  Y  V  C  *  E  R  E  S  L  N  R  S  R  L  V  R  I  V  L  L  H  Y  M  D  L  V  M  V  A  L  G  L  K  G  W  Q  K  R  L  L  R  R  S  C  *  Y  K  L  R  K  W  E  V  K  G  P  R  I  K  L  E  R  Y  W  R  F  *  G  R  R  M  K  R  R  K  L  I  G  R  S  C  L  I  R  M  M  I  S  V  K  H  G  *  V  L  H  S  S  C  L  F  L  F  L  H  C  M  L  F  H  S  F  F  *  E  M  A  C  N  *  A  R  F  S  L  C  I  A  S  D  S  M  I  L  V  L  V  L  L  V  V  S  S  E  V  M  *  Q  L  T  W  *  I  M  L  E  V  *  R  K  I  L  N  S  V  F  *  F  L  E  K  R  G  C  L  *  H  E  L  I  </second_frame>
            <third_frame>   F  Q  F  S  V  R  *  S  E  Q  N  C  N  W  G  I  R  S  S  A  S  T  S  S  C  P  S  I  *  I  G  T  N  *  A  *  F  G  S  G  S  I  S  P  H  F  S  S  E  *  Q  G  *  I  G  E  T  R  G  G  S  G  I  T  R  H  G  *  N  G  S  Y  D  G  S  D  S  V  D  T  L  *  P  G  C  E  L  *  R  E  S  S  N  A  *  W  G  C  S  G  V  F  C  M  Y  V  E  K  G  R  V  *  I  G  V  D  S  *  E  L  S  C  C  I  I  W  T  *  S  W  W  P  *  V  *  R  V  G  K  R  G  C  C  G  G  A  V  D  T  S  *  G  N  G  K  *  K  G  Q  G  *  S  *  K  D  I  G  G  F  E  A  E  G  *  R  G  G  S  *  L  G  E  V  A  *  F  G  *  *  Y  Q  S  S  T  D  K  F  F  I  A  L  V  C  F  C  F  F  T  V  C  Y  F  I  P  F  S  E  K  W  L  V  I  R  H  G  F  L  F  A  *  L  R  I  A  *  F  W  F  W  F  C  S  S  C  L  L  R  S  C  D  S  *  H  G  K  *  C  W  R  C  K  E  R  F  *  T  V  C  F  S  F  W  R  K  E  A  V  F  N  M  N  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54946" stop="54347"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFSLALDDQNKTAIGVLGALPPLLHALRSESERTRHDSALALYHLTLVQSNRAKLVKLGAVQALLGMVKTGHMMGRILLILCNLAASSEGRAAMLDGGAVECFVCMLRKGEFESESTRENCLAALYGLSHGGLRFKGLAKEAAAEELLIQVEEMGSERAKDKVRKILEVLRQKDEEEEVDWEKLLNSDDDISQARISSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="55919" PGL_stop="54953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55919" e_stop="54953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="55919" e_stop="54953" e_length="967"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55919" stop="55266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55693" stop="54953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55693" stop="55244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGATGTACACTTTTGCTCATCTCCTCAACAGGCTCAAAGTTGAATTTTTGAAACCTTTTGTTTTCATTCATATTTGAACCTCAAAGATTGAATCTTGAAACTTCTTTTTTTTTTTCTTCATTGAAATGGGTACTAGCAAGCAAAGATGGAGAATTTCATTTCACAAGTCTCCATCAAAACAACCTCCTATTCCTATAGAATTTGTCTGTCCTATTTCTGGTTCTCTCATGGCTGACCCTGTAATCGTTTCTTCAGGCCATACTTTTGAGCGTCATTGTGTTCATGCCTGCAAATCACTTTCTTTTACCCCTGTTCTTCCTGATGGCTCTGTTCCTGATTTCTCTACTGTGATCCCTAACTTAGCTCTCAAGTCTACAATCCTCAATTTTTGCCGTTCTTCTTTTCTTGACCCACCAAAACCCATCAATTTTCTCACAGCTGAAAATCTCGTTTTCACATTGAAGGCCACCCGAAAACCCCAAGATGCTACAAGATTTAATGGCGTCCGGGTTATGCAGACGGAAACTGAACTGAACCGGGTACCGAGTCACATATCAATGAGTTCAGAGGAATCTGTGACTCCTAGAAGTGGACCCACTTATTACTCTTCGTCGTCAGCCTCTGACTTTGAAACCCTAAACCCAAATTCCTTTGAAGAAGATGAACTACTTGTGAAATTGAAGAGTTCCCAAATATCTGAACAAGAAGAAGCTGTCATCTCGTTTCGAAAATTGACCCGAACCCGTGAAGAAACCCGGTTCCAGTTATGCACTCCGCGTATACTTTCAGCTCTACGTGTACTCATCACTTCAAGGTATGTTTCTGTACAAGTAAATTCAGTAGCGGCATTGGTAAATTTGTCGTTAGAGAATCGAAACAAGGTGAAAATTTTACGGTCTGGAATTGTTCCGTCTTTGATTGACGTGTTGAAAAGTGGATTCCAAGAATCACAGGAACATGTTGCT</gDNA_template>
            <first_frame> E  D  V  H  F  C  S  S  P  Q  Q  A  Q  S  *  I  F  E  T  F  C  F  H  S  Y  L  N  L  K  D  *  I  L  K  L  L  F  F  F  L  H  *  N  G  Y  *  Q  A  K  M  E  N  F  I  S  Q  V  S  I  K  T  T  S  Y  S  Y  R  I  C  L  S  Y  F  W  F  S  H  G  *  P  C  N  R  F  F  R  P  Y  F  *  A  S  L  C  S  C  L  Q  I  T  F  F  Y  P  C  S  S  *  W  L  C  S  *  F  L  Y  C  D  P  *  L  S  S  Q  V  Y  N  P  Q  F  L  P  F  F  F  S  *  P  T  K  T  H  Q  F  S  H  S  *  K  S  R  F  H  I  E  G  H  P  K  T  P  R  C  Y  K  I  *  W  R  P  G  Y  A  D  G  N  *  T  E  P  G  T  E  S  H  I  N  E  F  R  G  I  C  D  S  *  K  W  T  H  L  L  L  F  V  V  S  L  *  L  *  N  P  K  P  K  F  L  *  R  R  *  T  T  C  E  I  E  E  F  P  N  I  *  T  R  R  S  C  H  L  V  S  K  I  D  P  N  P  *  R  N  P  V  P  V  M  H  S  A  Y  T  F  S  S  T  C  T  H  H  F  K  V  C  F  C  T  S  K  F  S  S  G  I  G  K  F  V  V  R  E  S  K  Q  G  E  N  F  T  V  W  N  C  S  V  F  D  *  R  V  E  K  W  I  P  R  I  T  G  T  C  C  </first_frame>
            <second_frame>  K  M  Y  T  F  A  H  L  L  N  R  L  K  V  E  F  L  K  P  F  V  F  I  H  I  *  T  S  K  I  E  S  *  N  F  F  F  F  F  F  I  E  M  G  T  S  K  Q  R  W  R  I  S  F  H  K  S  P  S  K  Q  P  P  I  P  I  E  F  V  C  P  I  S  G  S  L  M  A  D  P  V  I  V  S  S  G  H  T  F  E  R  H  C  V  H  A  C  K  S  L  S  F  T  P  V  L  P  D  G  S  V  P  D  F  S  T  V  I  P  N  L  A  L  K  S  T  I  L  N  F  C  R  S  S  F  L  D  P  P  K  P  I  N  F  L  T  A  E  N  L  V  F  T  L  K  A  T  R  K  P  Q  D  A  T  R  F  N  G  V  R  V  M  Q  T  E  T  E  L  N  R  V  P  S  H  I  S  M  S  S  E  E  S  V  T  P  R  S  G  P  T  Y  Y  S  S  S  S  A  S  D  F  E  T  L  N  P  N  S  F  E  E  D  E  L  L  V  K  L  K  S  S  Q  I  S  E  Q  E  E  A  V  I  S  F  R  K  L  T  R  T  R  E  E  T  R  F  Q  L  C  T  P  R  I  L  S  A  L  R  V  L  I  T  S  R  Y  V  S  V  Q  V  N  S  V  A  A  L  V  N  L  S  L  E  N  R  N  K  V  K  I  L  R  S  G  I  V  P  S  L  I  D  V  L  K  S  G  F  Q  E  S  Q  E  H  V  A </second_frame>
            <third_frame>   R  C  T  L  L  L  I  S  S  T  G  S  K  L  N  F  *  N  L  L  F  S  F  I  F  E  P  Q  R  L  N  L  E  T  S  F  F  F  S  S  L  K  W  V  L  A  S  K  D  G  E  F  H  F  T  S  L  H  Q  N  N  L  L  F  L  *  N  L  S  V  L  F  L  V  L  S  W  L  T  L  *  S  F  L  Q  A  I  L  L  S  V  I  V  F  M  P  A  N  H  F  L  L  P  L  F  F  L  M  A  L  F  L  I  S  L  L  *  S  L  T  *  L  S  S  L  Q  S  S  I  F  A  V  L  L  F  L  T  H  Q  N  P  S  I  F  S  Q  L  K  I  S  F  S  H  *  R  P  P  E  N  P  K  M  L  Q  D  L  M  A  S  G  L  C  R  R  K  L  N  *  T  G  Y  R  V  T  Y  Q  *  V  Q  R  N  L  *  L  L  E  V  D  P  L  I  T  L  R  R  Q  P  L  T  L  K  P  *  T  Q  I  P  L  K  K  M  N  Y  L  *  N  *  R  V  P  K  Y  L  N  K  K  K  L  S  S  R  F  E  N  *  P  E  P  V  K  K  P  G  S  S  Y  A  L  R  V  Y  F  Q  L  Y  V  Y  S  S  L  Q  G  M  F  L  Y  K  *  I  Q  *  R  H  W  *  I  C  R  *  R  I  E  T  R  *  K  F  Y  G  L  E  L  F  R  L  *  L  T  C  *  K  V  D  S  K  N  H  R  N  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55819" stop="54953"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFFFFFFIEMGTSKQRWRISFHKSPSKQPPIPIEFVCPISGSLMADPVIVSSGHTFERHCVHACKSLSFTPVLPDGSVPDFSTVIPNLALKSTILNFCRSSFLDPPKPINFLTAENLVFTLKATRKPQDATRFNGVRVMQTETELNRVPSHISMSSEESVTPRSGPTYYSSSSASDFETLNPNSFEEDELLVKLKSSQISEQEEAVISFRKLTRTREETRFQLCTPRILSALRVLITSRYVSVQVNSVAALVNLSLENRNKVKILRSGIVPSLIDVLKSGFQESQEHVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="61149" PGL_stop="61997"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61149" e_stop="61280"/>
            <exon e_start="61387" e_stop="61997"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61149" e_stop="61280" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="1.000">
            <gDNA_intron_boundary i_start="61281" i_stop="61386" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="61387" e_stop="61997" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61149" stop="61280"/>
              <exon start="61387" stop="61954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61149" stop="61280"/>
              <exon start="61387" stop="61828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61149" stop="61280"/>
              <exon start="61387" stop="61791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61149" stop="61280"/>
              <exon start="61387" stop="61722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61155" stop="61280"/>
              <exon start="61387" stop="61929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61157" stop="61280"/>
              <exon start="61387" stop="61651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61158" stop="61280"/>
              <exon start="61387" stop="61720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61165" stop="61280"/>
              <exon start="61387" stop="61723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61165" stop="61280"/>
              <exon start="61387" stop="61660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61275" stop="61280"/>
              <exon start="61387" stop="61997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61413" stop="61929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61413" stop="61919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61413" stop="61919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61455" stop="61929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACAAAAATACACGAAAGAAGAAAATGGAAGGAGGAACAGAAGCCTATCCAGATTTAGGTAGACATTGCCAACTATCTGATTGCCATCAACTCGATTTTCTCCCTTTTACCTGCCATGCCTGTTTAAAG : GTATTTTGTGTGGAACATAGATCATGCAAGTCTCATGAATGCCCAAAATCTGACTTTAACAGCCGAATCGTTTTGGTTTGCGAAATTTGTTCTATGTCCATGGAAACTACCGGCTGTAAAGTTGAAGACCACAAAGCAATATTACAAAAACACGAGGAATCTGGGGATTGTGACCCTAAGAAGAAGAAGAAGAAACCTACCTGTCCTGTCAAAAGATGCAAGGGGATTTTGACCTTCTCAAACACTAGCACTTGCAAGATATGCCGGATTCAAGTTTGCCTCAGACACAGGTTCCCTGCTGATCACGCCTGTAACCCCACTTCTTCATCATCACAGCTGTTGCTAAAGGAACCCAATAACAAGTTTTTGACTGCTTTGCTTGCAAGGAATGGGAAAGATTGTGGGAATAAAAGTCGTGCCTCATCTCCAAGCCCTGCGAACCCTTCTGTGAAAGCTTGTTGATCGTTTCACAGCACATTACTATTCATTTGTCTTTTGTAATTACATTATTTTATGGAAAACAATGTTGTTCTATTTTCAATTTCTCCCTCCCTTCTATGATAAAACAACGAATTTAAGAATGACATAACAATTCGGAATCATATAATCTT</gDNA_template>
            <first_frame> K  N  K  N  T  R  K  K  K  M  E  G  G  T  E  A  Y  P  D  L  G  R  H  C  Q  L  S  D  C  H  Q  L  D  F  L  P  F  T  C  H  A  C  L  K  :  V  F  C  V  E  H  R  S  C  K  S  H  E  C  P  K  S  D  F  N  S  R  I  V  L  V  C  E  I  C  S  M  S  M  E  T  T  G  C  K  V  E  D  H  K  A  I  L  Q  K  H  E  E  S  G  D  C  D  P  K  K  K  K  K  K  P  T  C  P  V  K  R  C  K  G  I  L  T  F  S  N  T  S  T  C  K  I  C  R  I  Q  V  C  L  R  H  R  F  P  A  D  H  A  C  N  P  T  S  S  S  S  Q  L  L  L  K  E  P  N  N  K  F  L  T  A  L  L  A  R  N  G  K  D  C  G  N  K  S  R  A  S  S  P  S  P  A  N  P  S  V  K  A  C  *  S  F  H  S  T  L  L  F  I  C  L  L  *  L  H  Y  F  M  E  N  N  V  V  L  F  S  I  S  P  S  L  L  *  *  N  N  E  F  K  N  D  I  T  I  R  N  H  I  I   </first_frame>
            <second_frame>  R  T  K  I  H  E  R  R  K  W  K  E  E  Q  K  P  I  Q  I  *  V  D  I  A  N  Y  L  I  A  I  N  S  I  F  S  L  L  P  A  M  P  V  *  R :   Y  F  V  W  N  I  D  H  A  S  L  M  N  A  Q  N  L  T  L  T  A  E  S  F  W  F  A  K  F  V  L  C  P  W  K  L  P  A  V  K  L  K  T  T  K  Q  Y  Y  K  N  T  R  N  L  G  I  V  T  L  R  R  R  R  R  N  L  P  V  L  S  K  D  A  R  G  F  *  P  S  Q  T  L  A  L  A  R  Y  A  G  F  K  F  A  S  D  T  G  S  L  L  I  T  P  V  T  P  L  L  H  H  H  S  C  C  *  R  N  P  I  T  S  F  *  L  L  C  L  Q  G  M  G  K  I  V  G  I  K  V  V  P  H  L  Q  A  L  R  T  L  L  *  K  L  V  D  R  F  T  A  H  Y  Y  S  F  V  F  C  N  Y  I  I  L  W  K  T  M  L  F  Y  F  Q  F  L  P  P  F  Y  D  K  T  T  N  L  R  M  T  *  Q  F  G  I  I  *  S  </second_frame>
            <third_frame>   E  Q  K  Y  T  K  E  E  N  G  R  R  N  R  S  L  S  R  F  R  *  T  L  P  T  I  *  L  P  S  T  R  F  S  P  F  Y  L  P  C  L  F  K   : G  I  L  C  G  T  *  I  M  Q  V  S  *  M  P  K  I  *  L  *  Q  P  N  R  F  G  L  R  N  L  F  Y  V  H  G  N  Y  R  L  *  S  *  R  P  Q  S  N  I  T  K  T  R  G  I  W  G  L  *  P  *  E  E  E  E  E  T  Y  L  S  C  Q  K  M  Q  G  D  F  D  L  L  K  H  *  H  L  Q  D  M  P  D  S  S  L  P  Q  T  Q  V  P  C  *  S  R  L  *  P  H  F  F  I  I  T  A  V  A  K  G  T  Q  *  Q  V  F  D  C  F  A  C  K  E  W  E  R  L  W  E  *  K  S  C  L  I  S  K  P  C  E  P  F  C  E  S  L  L  I  V  S  Q  H  I  T  I  H  L  S  F  V  I  T  L  F  Y  G  K  Q  C  C  S  I  F  N  F  S  L  P  S  M  I  K  Q  R  I  *  E  *  H  N  N  S  E  S  Y  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61149" stop="61280"/>
                    <exon start="61387" stop="61848"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNKNTRKKKMEGGTEAYPDLGRHCQLSDCHQLDFLPFTCHACLKVFCVEHRSCKSHECPKSDFNSRIVLVCEICSMSMETTGCKVEDHKAILQKHEESGDCDPKKKKKKPTCPVKRCKGILTFSNTSTCKICRIQVCLRHRFPADHACNPTSSSSQLLLKEPNNKFLTALLARNGKDCGNKSRASSPSPANPSVKAC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="61932" PGL_stop="61378"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61932" e_stop="61378"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="61932" e_stop="61378" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61932" stop="61378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAATTGAAAATAGAACAACATTGTTTTCCATAAAATAATGTAATTACAAAAGACAAATGAATAGTAATGTGCTGTGAAACGATCAACAAGCTTTCACAGAAGGGTTCGCAGGGCTTGGAGATGAGGCACGACTTTTATTCCCACAATCTTTCCCATTCCTTGCAAGCAAAGCAGTCAAAAACTTGTTATTGGGTTCCTTTAGCAACAGCTGTGATGATGAAGAAGTGGGGTTACAGGCGTGATCAGCAGGGAACCTGTGTCTGAGGCAAACTTGAATCCGGCATATCTTGCAAGTGCTAGTGTTTGAGAAGGTCAAAATCCCCTTGCATCTTTTGACAGGACAGGTAGGTTTCTTCTTCTTCTTCTTAGGGTCACAATCCCCAGATTCCTCGTGTTTTTGTAATATTGCTTTGTGGTCTTCAACTTTACAGCCGGTAGTTTCCATGGACATAGAACAAATTTCGCAAACCAAAACGATTCGGCTGTTAAAGTCAGATTTTGGGCATTCATGAGACTTGCATGATCTATGTTCCACACAAAATACCTGCACATC</gDNA_template>
            <first_frame> R  N  *  K  *  N  N  I  V  F  H  K  I  M  *  L  Q  K  T  N  E  *  *  C  A  V  K  R  S  T  S  F  H  R  R  V  R  R  A  W  R  *  G  T  T  F  I  P  T  I  F  P  I  P  C  K  Q  S  S  Q  K  L  V  I  G  F  L  *  Q  Q  L  *  *  *  R  S  G  V  T  G  V  I  S  R  E  P  V  S  E  A  N  L  N  P  A  Y  L  A  S  A  S  V  *  E  G  Q  N  P  L  A  S  F  D  R  T  G  R  F  L  L  L  L  L  R  V  T  I  P  R  F  L  V  F  L  *  Y  C  F  V  V  F  N  F  T  A  G  S  F  H  G  H  R  T  N  F  A  N  Q  N  D  S  A  V  K  V  R  F  W  A  F  M  R  L  A  *  S  M  F  H  T  K  Y  L  H  I </first_frame>
            <second_frame>  E  I  E  N  R  T  T  L  F  S  I  K  *  C  N  Y  K  R  Q  M  N  S  N  V  L  *  N  D  Q  Q  A  F  T  E  G  F  A  G  L  G  D  E  A  R  L  L  F  P  Q  S  F  P  F  L  A  S  K  A  V  K  N  L  L  L  G  S  F  S  N  S  C  D  D  E  E  V  G  L  Q  A  *  S  A  G  N  L  C  L  R  Q  T  *  I  R  H  I  L  Q  V  L  V  F  E  K  V  K  I  P  L  H  L  L  T  G  Q  V  G  F  F  F  F  F  L  G  S  Q  S  P  D  S  S  C  F  C  N  I  A  L  W  S  S  T  L  Q  P  V  V  S  M  D  I  E  Q  I  S  Q  T  K  T  I  R  L  L  K  S  D  F  G  H  S  *  D  L  H  D  L  C  S  T  Q  N  T  C  T   </second_frame>
            <third_frame>   K  L  K  I  E  Q  H  C  F  P  *  N  N  V  I  T  K  D  K  *  I  V  M  C  C  E  T  I  N  K  L  S  Q  K  G  S  Q  G  L  E  M  R  H  D  F  Y  S  H  N  L  S  H  S  L  Q  A  K  Q  S  K  T  C  Y  W  V  P  L  A  T  A  V  M  M  K  K  W  G  Y  R  R  D  Q  Q  G  T  C  V  *  G  K  L  E  S  G  I  S  C  K  C  *  C  L  R  R  S  K  S  P  C  I  F  *  Q  D  R  *  V  S  S  S  S  S  *  G  H  N  P  Q  I  P  R  V  F  V  I  L  L  C  G  L  Q  L  Y  S  R  *  F  P  W  T  *  N  K  F  R  K  P  K  R  F  G  C  *  S  Q  I  L  G  I  H  E  T  C  M  I  Y  V  P  H  K  I  P  A  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61655" stop="61419"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRHILQVLVFEKVKIPLHLLTGQVGFFFFFLGSQSPDSSCFCNIALWSSTLQPVVSMDIEQISQTKTIRLLKSDFGHS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61870" stop="61667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVMCCETINKLSQKGSQGLEMRHDFYSHNLSHSLQAKQSKTCYWVPLATAVMMKKWGYRRDQQGTCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="65923" PGL_stop="61961"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65923" e_stop="65879"/>
            <exon e_start="65783" e_stop="65707"/>
            <exon e_start="65608" e_stop="65478"/>
            <exon e_start="65321" e_stop="65272"/>
            <exon e_start="65151" e_stop="64649"/>
            <exon e_start="63825" e_stop="63745"/>
            <exon e_start="62608" e_stop="62546"/>
            <exon e_start="62305" e_stop="61961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.874" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65923" e_stop="65879" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="65878" i_stop="65784" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65783" e_stop="65707" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65706" i_stop="65609" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65608" e_stop="65478" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.874">
            <gDNA_intron_boundary i_start="65477" i_stop="65322" i_length="156"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65321" e_stop="65272" e_length="50"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="65271" i_stop="65152" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65151" e_stop="64649" e_length="503"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64648" i_stop="63826" i_length="823"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63825" e_stop="63745" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63744" i_stop="62609" i_length="1136"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="62608" e_stop="62546" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="0.986" acc_prob="0.925">
            <gDNA_intron_boundary i_start="62545" i_stop="62306" i_length="240"/>
          </intron>
          <exon e_serial="8" e_score="0.997">
            <gDNA_exon_boundary e_start="62305" e_stop="61961" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65923" stop="65879"/>
              <exon start="65783" stop="65707"/>
              <exon start="65608" stop="65478"/>
              <exon start="65321" stop="65272"/>
              <exon start="65151" stop="64727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65886" stop="65879"/>
              <exon start="65783" stop="65707"/>
              <exon start="65608" stop="65478"/>
              <exon start="65321" stop="65272"/>
              <exon start="65151" stop="64818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65882" stop="65879"/>
              <exon start="65783" stop="65707"/>
              <exon start="65608" stop="65478"/>
              <exon start="65321" stop="65272"/>
              <exon start="65151" stop="64649"/>
              <exon start="63825" stop="63745"/>
              <exon start="62608" stop="62561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65755" stop="65707"/>
              <exon start="65608" stop="65478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64908" stop="64649"/>
              <exon start="63825" stop="63745"/>
              <exon start="62608" stop="62546"/>
              <exon start="62305" stop="61996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64853" stop="64649"/>
              <exon start="63825" stop="63745"/>
              <exon start="62608" stop="62546"/>
              <exon start="62305" stop="61961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGCTCGCTGAGTTTTGGAGTATAGACATATGGAGTATAACCAG : ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA : AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACG : TGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG : GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT : GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG : GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG : GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</gDNA_template>
            <first_frame> L  A  R  *  V  L  E  Y  R  H  M  E  Y  N  Q  :  I  *  L  C  I  S  F  D  H  L  K  C  Q  G  H  R  S  P  S  L  W  D  A  R  V  K :   K  W  L  S  D  H  Q  L  L  R  V  M  V  L  V  N  R  H  C  Q  E  A  K  G  H  *  E  R  P  I  G  L  T  L  R  I  L  Q  N  P  F  V  N   : V  C  E  G  I  K  M  Q  E  V  P  D  M  A  D  R  M  :  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  Q  D  M  T  S  S  T  L  L  S  *  K  S  L  P  L  *  P  *  G  Q  H  W  V  P  G  I  H  *  Q  V  F  P  L  Q  M  E  A  C  Y  T  D  H  I  L :   I  N  L  L  *  P  L  P  V  Y  *  I  R  S  V  W  G  N  T  L  S  T  F  K  P  R  R :   *  T  W  L  H  *  S  K  W  G  T  V  T  *  R  N  W  G  Y  Q  W :   D  P  G  R  R  F  S  W  L  C  F  P  K  L  R  R  P  V  *  Y  G  S  Y  I  Y  S  I  Q  C  S  C  F  *  A  E  V  I  K  L  A  V  L  G  K  C  I  *  R  V  A  V  *  C  W  S  I  W  L  I  F  V  V  *  *  T  V  Y  N  S  E  I  I  S  F  V  F  G  R  G  *  S  F  C  E  F  I  L  E  N  C  S  T  *  D  A  V  *  S  Y  S  Y  R  E  D  Y  M  I  P  N  C  Y  V  I  L   </first_frame>
            <second_frame>  L  L  A  E  F  W  S  I  D  I  W  S  I  T  R :   F  S  C  A  *  V  L  T  I  S  N  V  K  A  T  G  H  H  H  F  G  T  L  G  S   : K  S  G  *  A  I  I  S  F  S  G  *  W  F  *  S  T  D  I  V  K  R  Q  K  V  I  R  R  D  L  *  D  *  L  *  G  S  Y  K  I  P  S  *  T  :  C  A  R  G  *  R  C  R  R  F  Q  I  W  Q  T  E  W :   C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G  R  I  *  P  H  R  L  F  S  A  K  S  P  Y  P  C  D  H  E  V  S  T  G  C  Q  E  S  I  D  R  S  S  L  C  K  W  R  H  A  T  Q  T  I  S   : *  S  T  S  F  D  R  C  Q  S  I  K  F  A  R  F  G  E  I  H  Y  P  L  S  S  R  G   : G  R  H  G  C  T  E  A  N  G  G  P  *  P  E  G  I  G  D  T  N   : G  T  Q  E  E  D  S  L  G  Y  A  F  P  N  L  E  D  L  C  S  M  V  V  I  F  I  Q  F  N  A  P  V  S  K  L  K  L  S  S  W  L  F  L  G  N  V  Y  K  G  *  R  Y  N  A  G  V  F  G  *  Y  L  L  Y  N  R  Q  Y  I  T  V  K  L  S  L  S  F  L  G  E  A  D  L  F  V  N  L  F  *  R  T  V  Q  H  E  M  R  F  E  V  I  H  I  E  K  I  I  *  F  R  I  V  M  S  F  L  </second_frame>
            <third_frame>   C  S  L  S  F  G  V  *  T  Y  G  V  *  P   : D  L  A  V  H  K  F  *  P  S  Q  M  S  R  P  Q  V  T  I  T  L  G  R  S  G  Q  :  K  V  V  K  R  S  S  A  S  Q  G  N  G  F  S  Q  Q  T  L  S  R  G  K  R  S  L  G  E  T  Y  R  T  D  S  E  D  P  T  K  S  L  R  K  R :   V  R  G  D  K  D  A  G  G  S  R  Y  G  R  Q  N   : G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M  A  G  Y  D  L  I  D  S  S  Q  L  K  V  L  T  P  V  T  M  R  S  A  L  G  A  R  N  P  L  T  G  L  P  S  A  N  G  G  M  L  H  R  P  Y  P  :  D  Q  P  P  L  T  V  A  S  L  L  N  S  L  G  L  G  K  Y  T  I  H  F  Q  A  E  E  :  V  D  M  A  A  L  K  Q  M  G  D  R  D  L  K  E  L  G  I  P  M  :  G  P  R  K  K  I  L  L  A  M  L  S  Q  T  *  K  T  C  V  V  W  *  L  Y  L  F  N  S  M  L  L  F  L  S  *  S  Y  Q  A  G  C  S  W  E  M  Y  I  K  G  S  G  I  M  L  E  Y  L  A  D  I  C  C  I  I  D  S  I  *  Q  *  N  Y  L  F  R  F  W  E  R  L  I  F  L  *  I  Y  F  R  E  L  F  N  M  R  C  G  L  K  L  F  I  *  R  R  L  Y  D  S  E  L  L  C  H  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65760" stop="65707"/>
                    <exon start="65608" stop="65478"/>
                    <exon start="65321" stop="65272"/>
                    <exon start="65151" stop="64649"/>
                    <exon start="63825" stop="63745"/>
                    <exon start="62608" stop="62546"/>
                    <exon start="62305" stop="62261"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSQMSRPQVTITLGRSGQKVVKRSSASQGNGFSQQTLSRGKRSLGETYRTDSEDPTKSLRKRVRGDKDAGGSRYGRQNGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHMAGYDLIDSSQLKVLTPVTMRSALGARNPLTGLPSANGGMLHRPYPDQPPLTVASLLNSLGLGKYTIHFQAEEVDMAALKQMGDRDLKELGIPMGPRKKILLAMLSQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="65896" e_stop="65879"/>
            <exon e_start="65783" e_stop="65707"/>
            <exon e_start="65608" e_stop="65272"/>
            <exon e_start="65151" e_stop="64649"/>
            <exon e_start="63825" e_stop="63745"/>
            <exon e_start="62608" e_stop="62546"/>
            <exon e_start="62305" e_stop="61961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65896" e_stop="65879" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.946">
            <gDNA_intron_boundary i_start="65878" i_stop="65784" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65783" e_stop="65707" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.996">
            <gDNA_intron_boundary i_start="65706" i_stop="65609" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65608" e_stop="65272" e_length="337"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="65271" i_stop="65152" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65151" e_stop="64649" e_length="503"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64648" i_stop="63826" i_length="823"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63825" e_stop="63745" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63744" i_stop="62609" i_length="1136"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="62608" e_stop="62546" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.925">
            <gDNA_intron_boundary i_start="62545" i_stop="62306" i_length="240"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="62305" e_stop="61961" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65896" stop="65879"/>
              <exon start="65783" stop="65707"/>
              <exon start="65608" stop="65272"/>
              <exon start="65151" stop="64782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65895" stop="65879"/>
              <exon start="65783" stop="65707"/>
              <exon start="65608" stop="65272"/>
              <exon start="65151" stop="65023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65755" stop="65707"/>
              <exon start="65608" stop="65478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64908" stop="64649"/>
              <exon start="63825" stop="63745"/>
              <exon start="62608" stop="62546"/>
              <exon start="62305" stop="61996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64853" stop="64649"/>
              <exon start="63825" stop="63745"/>
              <exon start="62608" stop="62546"/>
              <exon start="62305" stop="61961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATATGGAGTATAACCAG : ATTTAGCTGTGCATAAGTTTTGACCATCTCAAATGTCAAGGCCACAGGTCACCATCACTTTGGGACGCTCGGGTCAA : AAAGTGGTTAAGCGATCATCAGCTTCTCAGGGTAATGGTTTTAGTCAACAGACATTGTCAAGAGGCAAAAGGTCATTAGGAGAGACCTATAGGACTGACTCTGAGGATCCTACAAAATCCCTTCGTAAACGGTAAAATCTTTTGTTTGTTGTTCTGGTTGAGCTAATGTAGGTTGTATCTAATTTATTGTTTTCAGAATAATGGAAGGAATATAAAAAAACTATCAAAGTTAGAGTGGTAGTTTTGATTTTATTTGATAGTGGAAGTTTTGCTATTGTTTTTGCAAGTGTGCGAGGGGATAAAGATGCAGGAGGTTCCAGATATGGCAGACAGAATG : GTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT : GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG : GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG : GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</gDNA_template>
            <first_frame> H  M  E  Y  N  Q  :  I  *  L  C  I  S  F  D  H  L  K  C  Q  G  H  R  S  P  S  L  W  D  A  R  V  K :   K  W  L  S  D  H  Q  L  L  R  V  M  V  L  V  N  R  H  C  Q  E  A  K  G  H  *  E  R  P  I  G  L  T  L  R  I  L  Q  N  P  F  V  N  G  K  I  F  C  L  L  F  W  L  S  *  C  R  L  Y  L  I  Y  C  F  Q  N  N  G  R  N  I  K  K  L  S  K  L  E  W  *  F  *  F  Y  L  I  V  E  V  L  L  L  F  L  Q  V  C  E  G  I  K  M  Q  E  V  P  D  M  A  D  R  M  :  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  Q  D  M  T  S  S  T  L  L  S  *  K  S  L  P  L  *  P  *  G  Q  H  W  V  P  G  I  H  *  Q  V  F  P  L  Q  M  E  A  C  Y  T  D  H  I  L :   I  N  L  L  *  P  L  P  V  Y  *  I  R  S  V  W  G  N  T  L  S  T  F  K  P  R  R :   *  T  W  L  H  *  S  K  W  G  T  V  T  *  R  N  W  G  Y  Q  W :   D  P  G  R  R  F  S  W  L  C  F  P  K  L  R  R  P  V  *  Y  G  S  Y  I  Y  S  I  Q  C  S  C  F  *  A  E  V  I  K  L  A  V  L  G  K  C  I  *  R  V  A  V  *  C  W  S  I  W  L  I  F  V  V  *  *  T  V  Y  N  S  E  I  I  S  F  V  F  G  R  G  *  S  F  C  E  F  I  L  E  N  C  S  T  *  D  A  V  *  S  Y  S  Y  R  E  D  Y  M  I  P  N  C  Y  V  I  L   </first_frame>
            <second_frame>  I  W  S  I  T  R :   F  S  C  A  *  V  L  T  I  S  N  V  K  A  T  G  H  H  H  F  G  T  L  G  S   : K  S  G  *  A  I  I  S  F  S  G  *  W  F  *  S  T  D  I  V  K  R  Q  K  V  I  R  R  D  L  *  D  *  L  *  G  S  Y  K  I  P  S  *  T  V  K  S  F  V  C  C  S  G  *  A  N  V  G  C  I  *  F  I  V  F  R  I  M  E  G  I  *  K  N  Y  Q  S  *  S  G  S  F  D  F  I  *  *  W  K  F  C  Y  C  F  C  K  C  A  R  G  *  R  C  R  R  F  Q  I  W  Q  T  E  W :   C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G  R  I  *  P  H  R  L  F  S  A  K  S  P  Y  P  C  D  H  E  V  S  T  G  C  Q  E  S  I  D  R  S  S  L  C  K  W  R  H  A  T  Q  T  I  S   : *  S  T  S  F  D  R  C  Q  S  I  K  F  A  R  F  G  E  I  H  Y  P  L  S  S  R  G   : G  R  H  G  C  T  E  A  N  G  G  P  *  P  E  G  I  G  D  T  N   : G  T  Q  E  E  D  S  L  G  Y  A  F  P  N  L  E  D  L  C  S  M  V  V  I  F  I  Q  F  N  A  P  V  S  K  L  K  L  S  S  W  L  F  L  G  N  V  Y  K  G  *  R  Y  N  A  G  V  F  G  *  Y  L  L  Y  N  R  Q  Y  I  T  V  K  L  S  L  S  F  L  G  E  A  D  L  F  V  N  L  F  *  R  T  V  Q  H  E  M  R  F  E  V  I  H  I  E  K  I  I  *  F  R  I  V  M  S  F  L  </second_frame>
            <third_frame>   Y  G  V  *  P   : D  L  A  V  H  K  F  *  P  S  Q  M  S  R  P  Q  V  T  I  T  L  G  R  S  G  Q  :  K  V  V  K  R  S  S  A  S  Q  G  N  G  F  S  Q  Q  T  L  S  R  G  K  R  S  L  G  E  T  Y  R  T  D  S  E  D  P  T  K  S  L  R  K  R  *  N  L  L  F  V  V  L  V  E  L  M  *  V  V  S  N  L  L  F  S  E  *  W  K  E  Y  K  K  T  I  K  V  R  V  V  V  L  I  L  F  D  S  G  S  F  A  I  V  F  A  S  V  R  G  D  K  D  A  G  G  S  R  Y  G  R  Q  N   : G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M  A  G  Y  D  L  I  D  S  S  Q  L  K  V  L  T  P  V  T  M  R  S  A  L  G  A  R  N  P  L  T  G  L  P  S  A  N  G  G  M  L  H  R  P  Y  P  :  D  Q  P  P  L  T  V  A  S  L  L  N  S  L  G  L  G  K  Y  T  I  H  F  Q  A  E  E  :  V  D  M  A  A  L  K  Q  M  G  D  R  D  L  K  E  L  G  I  P  M  :  G  P  R  K  K  I  L  L  A  M  L  S  Q  T  *  K  T  C  V  V  W  *  L  Y  L  F  N  S  M  L  L  F  L  S  *  S  Y  Q  A  G  C  S  W  E  M  Y  I  K  G  S  G  I  M  L  E  Y  L  A  D  I  C  C  I  I  D  S  I  *  Q  *  N  Y  L  F  R  F  W  E  R  L  I  F  L  *  I  Y  F  R  E  L  F  N  M  R  C  G  L  K  L  F  I  *  R  R  L  Y  D  S  E  L  L  C  H  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65407" stop="65272"/>
                    <exon start="65151" stop="64649"/>
                    <exon start="63825" stop="63745"/>
                    <exon start="62608" stop="62546"/>
                    <exon start="62305" stop="62261"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WKEYKKTIKVRVVVLILFDSGSFAIVFASVRGDKDAGGSRYGRQNGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHMAGYDLIDSSQLKVLTPVTMRSALGARNPLTGLPSANGGMLHRPYPDQPPLTVASLLNSLGLGKYTIHFQAEEVDMAALKQMGDRDLKELGIPMGPRKKILLAMLSQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="65156" e_stop="64649"/>
            <exon e_start="63825" e_stop="63745"/>
            <exon e_start="62608" e_stop="62546"/>
            <exon e_start="62305" e_stop="61961"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.981" e_score="0.998"/>
          <exon-intron don_prob="0.971" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.925" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="65156" e_stop="64649" e_length="508"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.981">
            <gDNA_intron_boundary i_start="64648" i_stop="63826" i_length="823"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63825" e_stop="63745" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.998">
            <gDNA_intron_boundary i_start="63744" i_stop="62609" i_length="1136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62608" e_stop="62546" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.925">
            <gDNA_intron_boundary i_start="62545" i_stop="62306" i_length="240"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="62305" e_stop="61961" e_length="345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65156" stop="64649"/>
              <exon start="63825" stop="63745"/>
              <exon start="62608" stop="62546"/>
              <exon start="62305" stop="62300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65156" stop="64712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64908" stop="64649"/>
              <exon start="63825" stop="63745"/>
              <exon start="62608" stop="62546"/>
              <exon start="62305" stop="61996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64853" stop="64649"/>
              <exon start="63825" stop="63745"/>
              <exon start="62608" stop="62546"/>
              <exon start="62305" stop="61961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAGGTGCACGCATTGGGAAAAATGACCTCCGACTGAAACTAATGCACAGAAGAAGGCAAAGGGAAATTCATCTGCAGATTGAAGAAAGAAAAAAGGAGCAGCATAAGAGGATGACAAGAAGTGTTCAATCTGCAGAACAATCTCACAAGAGGCTTGTCACCAGCAGCCAACCGTCGTCAGGAGCTAGCGAATTGCTTCAGATAGAGGCAATTAGATCCTCCTATACATCACAAACTGCTGCTGGTGTTAGATCAAGATCCCCTTATAGACTTGCAAACGATTCTAAAGAAGTCTCTTCTTCAAGGAATATCACTGCAGCTCAGCATGTACCGTCAGTAAGGCCAGCCGAAGCTTCAAGAATGGTTCATATGGCAGGATATGACCTCATCGACTCTTCTCAGCTAAAAGTCCTTACCCCTGTGACCATGAGGTCAGCACTGGGTGCCAGGAATCCATTGACAGGTCTTCCCTCTGCAAATGGAGGCATGCTACACAGACCATATCCT : GATCAACCTCCTTTGACCGTTGCCAGTCTATTAAATTCGCTCGGTTTGGGGAAATACACTATCCACTTTCAAGCCGAGGAG : GTAGACATGGCTGCACTGAAGCAAATGGGGGACCGTGACCTGAAGGAATTGGGGATACCAATG : GGACCCAGGAAGAAGATTCTCTTGGCTATGCTTTCCCAAACTTAGAAGACCTGTGTAGTATGGTAGTTATATTTATTCAATTCAATGCTCCTGTTTCTAAGCTGAAGTTATCAAGCTGGCTGTTCTTGGGAAATGTATATAAAGGGTAGCGGTATAATGCTGGAGTATTTGGCTGATATTTGTTGTATAATAGACAGTATATAACAGTGAAATTATCTCTTTCGTTTTTGGGAGAGGCTGATCTTTTTGTGAATTTATTTTAGAGAACTGTTCAACATGAGATGCGGTTTGAAGTTATTCATATAGAGAAGATTATATGATTCCGAATTGTTATGTCATTCTTAA</gDNA_template>
            <first_frame> *  R  C  T  H  W  E  K  *  P  P  T  E  T  N  A  Q  K  K  A  K  G  N  S  S  A  D  *  R  K  K  K  G  A  A  *  E  D  D  K  K  C  S  I  C  R  T  I  S  Q  E  A  C  H  Q  Q  P  T  V  V  R  S  *  R  I  A  S  D  R  G  N  *  I  L  L  Y  I  T  N  C  C  W  C  *  I  K  I  P  L  *  T  C  K  R  F  *  R  S  L  F  F  K  E  Y  H  C  S  S  A  C  T  V  S  K  A  S  R  S  F  K  N  G  S  Y  G  R  I  *  P  H  R  L  F  S  A  K  S  P  Y  P  C  D  H  E  V  S  T  G  C  Q  E  S  I  D  R  S  S  L  C  K  W  R  H  A  T  Q  T  I  S   : *  S  T  S  F  D  R  C  Q  S  I  K  F  A  R  F  G  E  I  H  Y  P  L  S  S  R  G   : G  R  H  G  C  T  E  A  N  G  G  P  *  P  E  G  I  G  D  T  N   : G  T  Q  E  E  D  S  L  G  Y  A  F  P  N  L  E  D  L  C  S  M  V  V  I  F  I  Q  F  N  A  P  V  S  K  L  K  L  S  S  W  L  F  L  G  N  V  Y  K  G  *  R  Y  N  A  G  V  F  G  *  Y  L  L  Y  N  R  Q  Y  I  T  V  K  L  S  L  S  F  L  G  E  A  D  L  F  V  N  L  F  *  R  T  V  Q  H  E  M  R  F  E  V  I  H  I  E  K  I  I  *  F  R  I  V  M  S  F  L  </first_frame>
            <second_frame>  K  G  A  R  I  G  K  N  D  L  R  L  K  L  M  H  R  R  R  Q  R  E  I  H  L  Q  I  E  E  R  K  K  E  Q  H  K  R  M  T  R  S  V  Q  S  A  E  Q  S  H  K  R  L  V  T  S  S  Q  P  S  S  G  A  S  E  L  L  Q  I  E  A  I  R  S  S  Y  T  S  Q  T  A  A  G  V  R  S  R  S  P  Y  R  L  A  N  D  S  K  E  V  S  S  S  R  N  I  T  A  A  Q  H  V  P  S  V  R  P  A  E  A  S  R  M  V  H  M  A  G  Y  D  L  I  D  S  S  Q  L  K  V  L  T  P  V  T  M  R  S  A  L  G  A  R  N  P  L  T  G  L  P  S  A  N  G  G  M  L  H  R  P  Y  P  :  D  Q  P  P  L  T  V  A  S  L  L  N  S  L  G  L  G  K  Y  T  I  H  F  Q  A  E  E  :  V  D  M  A  A  L  K  Q  M  G  D  R  D  L  K  E  L  G  I  P  M  :  G  P  R  K  K  I  L  L  A  M  L  S  Q  T  *  K  T  C  V  V  W  *  L  Y  L  F  N  S  M  L  L  F  L  S  *  S  Y  Q  A  G  C  S  W  E  M  Y  I  K  G  S  G  I  M  L  E  Y  L  A  D  I  C  C  I  I  D  S  I  *  Q  *  N  Y  L  F  R  F  W  E  R  L  I  F  L  *  I  Y  F  R  E  L  F  N  M  R  C  G  L  K  L  F  I  *  R  R  L  Y  D  S  E  L  L  C  H  S  * </second_frame>
            <third_frame>   K  V  H  A  L  G  K  M  T  S  D  *  N  *  C  T  E  E  G  K  G  K  F  I  C  R  L  K  K  E  K  R  S  S  I  R  G  *  Q  E  V  F  N  L  Q  N  N  L  T  R  G  L  S  P  A  A  N  R  R  Q  E  L  A  N  C  F  R  *  R  Q  L  D  P  P  I  H  H  K  L  L  L  V  L  D  Q  D  P  L  I  D  L  Q  T  I  L  K  K  S  L  L  Q  G  I  S  L  Q  L  S  M  Y  R  Q  *  G  Q  P  K  L  Q  E  W  F  I  W  Q  D  M  T  S  S  T  L  L  S  *  K  S  L  P  L  *  P  *  G  Q  H  W  V  P  G  I  H  *  Q  V  F  P  L  Q  M  E  A  C  Y  T  D  H  I  L :   I  N  L  L  *  P  L  P  V  Y  *  I  R  S  V  W  G  N  T  L  S  T  F  K  P  R  R :   *  T  W  L  H  *  S  K  W  G  T  V  T  *  R  N  W  G  Y  Q  W :   D  P  G  R  R  F  S  W  L  C  F  P  K  L  R  R  P  V  *  Y  G  S  Y  I  Y  S  I  Q  C  S  C  F  *  A  E  V  I  K  L  A  V  L  G  K  C  I  *  R  V  A  V  *  C  W  S  I  W  L  I  F  V  V  *  *  T  V  Y  N  S  E  I  I  S  F  V  F  G  R  G  *  S  F  C  E  F  I  L  E  N  C  S  T  *  D  A  V  *  S  Y  S  Y  R  E  D  Y  M  I  P  N  C  Y  V  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65155" stop="64649"/>
                    <exon start="63825" stop="63745"/>
                    <exon start="62608" stop="62546"/>
                    <exon start="62305" stop="62261"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGARIGKNDLRLKLMHRRRQREIHLQIEERKKEQHKRMTRSVQSAEQSHKRLVTSSQPSSGASELLQIEAIRSSYTSQTAAGVRSRSPYRLANDSKEVSSSRNITAAQHVPSVRPAEASRMVHMAGYDLIDSSQLKVLTPVTMRSALGARNPLTGLPSANGGMLHRPYPDQPPLTVASLLNSLGLGKYTIHFQAEEVDMAALKQMGDRDLKELGIPMGPRKKILLAMLSQT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="73250" PGL_stop="67818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73250" e_stop="72930"/>
            <exon e_start="72359" e_stop="72247"/>
            <exon e_start="69387" e_stop="69338"/>
            <exon e_start="69207" e_stop="69136"/>
            <exon e_start="68486" e_stop="68426"/>
            <exon e_start="68215" e_stop="67818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.718" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73250" e_stop="72930" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.959">
            <gDNA_intron_boundary i_start="72929" i_stop="72360" i_length="570"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72359" e_stop="72247" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.718">
            <gDNA_intron_boundary i_start="72246" i_stop="69388" i_length="2859"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69387" e_stop="69338" e_length="50"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69337" i_stop="69208" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69207" e_stop="69136" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.854">
            <gDNA_intron_boundary i_start="69135" i_stop="68487" i_length="649"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68486" e_stop="68426" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.960">
            <gDNA_intron_boundary i_start="68425" i_stop="68216" i_length="210"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68215" e_stop="67818" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73250" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68459"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73250" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73166" stop="72930"/>
              <exon start="72359" stop="72275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73154" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="67833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73149" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73146" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73129" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="67818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73122" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73121" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="67848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73120" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73119" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73118" stop="72952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73117" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="67967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73116" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73116" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73114" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73114" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73114" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73114" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73113" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73110" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="67947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73110" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73103" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73101" stop="72930"/>
              <exon start="72359" stop="72272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73078" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72991" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="67849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72985" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="67877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72965" stop="72930"/>
              <exon start="72359" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="67858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72313" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72313" stop="72247"/>
              <exon start="69387" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="68054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69385" stop="69338"/>
              <exon start="69207" stop="69136"/>
              <exon start="68486" stop="68426"/>
              <exon start="68215" stop="67903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68442" stop="68426"/>
              <exon start="68215" stop="67818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68433" stop="68426"/>
              <exon start="68215" stop="67885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68145" stop="67818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTTTATTAATTTATTTTAATTATAATTTTTCTTCAGATATTAGGTGAAAAGAAAAGGAGAGAACGGATAGTAATATATAAATATCAACGCTGTACGAAAGAGATTTTTTCCTTTCCGAAGTTGTGGTGGTTAACAGAATCACATTTTTGACTCAATCGGAAAGTCGGAGCAGAAAACGAGACAACGAAGCAACAACTACCGGAATCCGCCATGAGAACTCTTCAAGCTTCCACCTCCTACAGCGTTGGCTTTGGAATTTCATCTTTTGCTACTCGTCCTAAGCCTTCTTCTACTCATCGCTGCCTCACCGTAGCCAAAA : TGGAGCCATCAGAGAAATCTGTTGAAATCATGAGGAAATTCTCGGAGCAGTATGCTCGCAGGTCAGAAACATATTTCTGCATGGACAAAGGTGTTACTTCTGTGGTCATCAAG : GGTTTGGCAGAGCACAAGGATACATTGGGTGCTCCACTCTGCCCCTGCAG : GCATTATGATGACAAAGCTGCAGAAGCGCAGCAGGGCTTCTGGAATTGTCCGTGTGTACCAATGAGAGAGAG : GAAGGAGTGTCACTGCATGCTTTTTCTGACCCCTGATAATGATTTTGCTGGAGAAGAACAG : ACGATTACTATGGAGGAGATTAAGGAAACAACAGCCAACATGTGATGCTCGGACATCTTATACATGCTATGAACATTACGTTTTTGTTGTACATGTATATTTGAGTATTAGATGAAGAGCAACAATCCAGTTCTGATGTGACATGTTGCTGAAACCCCATCCATTACATTGTTGTGATTCTGATCTCGTCTAGTGAGATTGGGTGGGTGAATAACAGTGCAATTATGCTAACTGTTGTGTGATGCATCTAGATTGTATGAGTCATAACTCATATTAGGGGATTTTGGGTGGCTTCAGCTTCAGCTAATGCAAATCCTGATTTTGTATAAAACTGGAATCAATTTCCAAAAGCTGCTTTGTGAAGTTCAATCCCAGTCGTCTGACGTGTTAATAATGAA</gDNA_template>
            <first_frame> P  F  I  N  L  F  *  L  *  F  F  F  R  Y  *  V  K  R  K  G  E  N  G  *  *  Y  I  N  I  N  A  V  R  K  R  F  F  P  F  R  S  C  G  G  *  Q  N  H  I  F  D  S  I  G  K  S  E  Q  K  T  R  Q  R  S  N  N  Y  R  N  P  P  *  E  L  F  K  L  P  P  P  T  A  L  A  L  E  F  H  L  L  L  L  V  L  S  L  L  L  L  I  A  A  S  P  *  P  K  :  W  S  H  Q  R  N  L  L  K  S  *  G  N  S  R  S  S  M  L  A  G  Q  K  H  I  S  A  W  T  K  V  L  L  L  W  S  S  R :   V  W  Q  S  T  R  I  H  W  V  L  H  S  A  P  A   : G  I  M  M  T  K  L  Q  K  R  S  R  A  S  G  I  V  R  V  Y  Q  *  E  R   : G  R  S  V  T  A  C  F  F  *  P  L  I  M  I  L  L  E  K  N  R :   R  L  L  W  R  R  L  R  K  Q  Q  P  T  C  D  A  R  T  S  Y  T  C  Y  E  H  Y  V  F  V  V  H  V  Y  L  S  I  R  *  R  A  T  I  Q  F  *  C  D  M  L  L  K  P  H  P  L  H  C  C  D  S  D  L  V  *  *  D  W  V  G  E  *  Q  C  N  Y  A  N  C  C  V  M  H  L  D  C  M  S  H  N  S  Y  *  G  I  L  G  G  F  S  F  S  *  C  K  S  *  F  C  I  K  L  E  S  I  S  K  S  C  F  V  K  F  N  P  S  R  L  T  C  *  *  *  </first_frame>
            <second_frame>  R  L  L  I  Y  F  N  Y  N  F  S  S  D  I  R  *  K  E  K  E  R  T  D  S  N  I  *  I  S  T  L  Y  E  R  D  F  F  L  S  E  V  V  V  V  N  R  I  T  F  L  T  Q  S  E  S  R  S  R  K  R  D  N  E  A  T  T  T  G  I  R  H  E  N  S  S  S  F  H  L  L  Q  R  W  L  W  N  F  I  F  C  Y  S  S  *  A  F  F  Y  S  S  L  P  H  R  S  Q  N :   G  A  I  R  E  I  C  *  N  H  E  E  I  L  G  A  V  C  S  Q  V  R  N  I  F  L  H  G  Q  R  C  Y  F  C  G  H  Q   : G  F  G  R  A  Q  G  Y  I  G  C  S  T  L  P  L  Q  :  A  L  *  *  Q  S  C  R  S  A  A  G  L  L  E  L  S  V  C  T  N  E  R  E  :  E  G  V  S  L  H  A  F  S  D  P  *  *  *  F  C  W  R  R  T   : D  D  Y  Y  G  G  D  *  G  N  N  S  Q  H  V  M  L  G  H  L  I  H  A  M  N  I  T  F  L  L  Y  M  Y  I  *  V  L  D  E  E  Q  Q  S  S  S  D  V  T  C  C  *  N  P  I  H  Y  I  V  V  I  L  I  S  S  S  E  I  G  W  V  N  N  S  A  I  M  L  T  V  V  *  C  I  *  I  V  *  V  I  T  H  I  R  G  F  W  V  A  S  A  S  A  N  A  N  P  D  F  V  *  N  W  N  Q  F  P  K  A  A  L  *  S  S  I  P  V  V  *  R  V  N  N  E </second_frame>
            <third_frame>   V  Y  *  F  I  L  I  I  I  F  L  Q  I  L  G  E  K  K  R  R  E  R  I  V  I  Y  K  Y  Q  R  C  T  K  E  I  F  S  F  P  K  L  W  W  L  T  E  S  H  F  *  L  N  R  K  V  G  A  E  N  E  T  T  K  Q  Q  L  P  E  S  A  M  R  T  L  Q  A  S  T  S  Y  S  V  G  F  G  I  S  S  F  A  T  R  P  K  P  S  S  T  H  R  C  L  T  V  A  K   : M  E  P  S  E  K  S  V  E  I  M  R  K  F  S  E  Q  Y  A  R  R  S  E  T  Y  F  C  M  D  K  G  V  T  S  V  V  I  K  :  G  L  A  E  H  K  D  T  L  G  A  P  L  C  P  C  R :   H  Y  D  D  K  A  A  E  A  Q  Q  G  F  W  N  C  P  C  V  P  M  R  E  R :   K  E  C  H  C  M  L  F  L  T  P  D  N  D  F  A  G  E  E  Q  :  T  I  T  M  E  E  I  K  E  T  T  A  N  M  *  C  S  D  I  L  Y  M  L  *  T  L  R  F  C  C  T  C  I  F  E  Y  *  M  K  S  N  N  P  V  L  M  *  H  V  A  E  T  P  S  I  T  L  L  *  F  *  S  R  L  V  R  L  G  G  *  I  T  V  Q  L  C  *  L  L  C  D  A  S  R  L  Y  E  S  *  L  I  L  G  D  F  G  W  L  Q  L  Q  L  M  Q  I  L  I  L  Y  K  T  G  I  N  F  Q  K  L  L  C  E  V  Q  S  Q  S  S  D  V  L  I  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73098" stop="72930"/>
                    <exon start="72359" stop="72247"/>
                    <exon start="69387" stop="69338"/>
                    <exon start="69207" stop="69136"/>
                    <exon start="68486" stop="68426"/>
                    <exon start="68215" stop="68171"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNRKVGAENETTKQQLPESAMRTLQASTSYSVGFGISSFATRPKPSSTHRCLTVAKMEPSEKSVEIMRKFSEQYARRSETYFCMDKGVTSVVIKGLAEHKDTLGAPLCPCRHYDDKAAEAQQGFWNCPCVPMRERKECHCMLFLTPDNDFAGEEQTITMEEIKETTANM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71781" e_stop="71049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="71781" e_stop="71049" e_length="733"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71781" stop="71049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71781" stop="71055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332165" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGAACGTTAGGATACTCCCTCCTAGGCTATAAAGTGAGAATTTATCGTATCTGCTTGGAAACTGTATTGTCGTTTTACTAACTCCAAGATAATGGCATTCTGTATACTTGAAGTTTAGGACAAGCTGCAAGTGTGTGATGTCATTTCAGTTCCAAAAAGTTGCTTCTATACTATAGCTGCTTGATTATTGTTGAATAGTATTTTGTTGCTCAGAAGTTCTACTTTGGTCTTATTACCTCATAAAAAAAAAAGTGATACCTTTGGTTTAGAGCTTGAATAGCCAATCACTTTTTCCCAGGTATCCTTCACTTTATATTTCAGGTTTAGGTGTGTGTTCGTGTATCTTCTAGAAGCATATTTCTATGTAAGTTCGTGAAAGTATGAATTTAAAATTGTGGAGCTGTGGAAACTCTTGAACTGAGGGGATATCAATTATCAAAGACTTATAATGAGAGATAAACAATAGCACAAAGCTAATTATATAATAAAGGACAGTTATACAAGGAATTTTTAACACAAAGAAGGGAATAAGAATTGAGAAACTTTTAATAATGTGAGTACAAGATTTACCATCTCATAAACAAGATAGAAGAATAGATTTTATCATCTCATAAACAAGATAGAAGAATAGATTTATCTCAAGTTTCAGAGAATGTGACTGTGACGGAGTTAATAGATTGCTAAATACAAGCCAATCACAAAGATCAATCCAACATGCTGTCCTTCTTTT</gDNA_template>
            <first_frame> F  *  T  L  G  Y  S  L  L  G  Y  K  V  R  I  Y  R  I  C  L  E  T  V  L  S  F  Y  *  L  Q  D  N  G  I  L  Y  T  *  S  L  G  Q  A  A  S  V  *  C  H  F  S  S  K  K  L  L  L  Y  Y  S  C  L  I  I  V  E  *  Y  F  V  A  Q  K  F  Y  F  G  L  I  T  S  *  K  K  K  *  Y  L  W  F  R  A  *  I  A  N  H  F  F  P  G  I  L  H  F  I  F  Q  V  *  V  C  V  R  V  S  S  R  S  I  F  L  C  K  F  V  K  V  *  I  *  N  C  G  A  V  E  T  L  E  L  R  G  Y  Q  L  S  K  T  Y  N  E  R  *  T  I  A  Q  S  *  L  Y  N  K  G  Q  L  Y  K  E  F  L  T  Q  R  R  E  *  E  L  R  N  F  *  *  C  E  Y  K  I  Y  H  L  I  N  K  I  E  E  *  I  L  S  S  H  K  Q  D  R  R  I  D  L  S  Q  V  S  E  N  V  T  V  T  E  L  I  D  C  *  I  Q  A  N  H  K  D  Q  S  N  M  L  S  F  F  </first_frame>
            <second_frame>  F  E  R  *  D  T  P  S  *  A  I  K  *  E  F  I  V  S  A  W  K  L  Y  C  R  F  T  N  S  K  I  M  A  F  C  I  L  E  V  *  D  K  L  Q  V  C  D  V  I  S  V  P  K  S  C  F  Y  T  I  A  A  *  L  L  L  N  S  I  L  L  L  R  S  S  T  L  V  L  L  P  H  K  K  K  S  D  T  F  G  L  E  L  E  *  P  I  T  F  S  Q  V  S  F  T  L  Y  F  R  F  R  C  V  F  V  Y  L  L  E  A  Y  F  Y  V  S  S  *  K  Y  E  F  K  I  V  E  L  W  K  L  L  N  *  G  D  I  N  Y  Q  R  L  I  M  R  D  K  Q  *  H  K  A  N  Y  I  I  K  D  S  Y  T  R  N  F  *  H  K  E  G  N  K  N  *  E  T  F  N  N  V  S  T  R  F  T  I  S  *  T  R  *  K  N  R  F  Y  H  L  I  N  K  I  E  E  *  I  Y  L  K  F  Q  R  M  *  L  *  R  S  *  *  I  A  K  Y  K  P  I  T  K  I  N  P  T  C  C  P  S  F </second_frame>
            <third_frame>   L  N  V  R  I  L  P  P  R  L  *  S  E  N  L  S  Y  L  L  G  N  C  I  V  V  L  L  T  P  R  *  W  H  S  V  Y  L  K  F  R  T  S  C  K  C  V  M  S  F  Q  F  Q  K  V  A  S  I  L  *  L  L  D  Y  C  *  I  V  F  C  C  S  E  V  L  L  W  S  Y  Y  L  I  K  K  K  V  I  P  L  V  *  S  L  N  S  Q  S  L  F  P  R  Y  P  S  L  Y  I  S  G  L  G  V  C  S  C  I  F  *  K  H  I  S  M  *  V  R  E  S  M  N  L  K  L  W  S  C  G  N  S  *  T  E  G  I  S  I  I  K  D  L  *  *  E  I  N  N  S  T  K  L  I  I  *  *  R  T  V  I  Q  G  I  F  N  T  K  K  G  I  R  I  E  K  L  L  I  M  *  V  Q  D  L  P  S  H  K  Q  D  R  R  I  D  F  I  I  S  *  T  R  *  K  N  R  F  I  S  S  F  R  E  C  D  C  D  G  V  N  R  L  L  N  T  S  Q  S  Q  R  S  I  Q  H  A  V  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0014P22.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="76896" PGL_stop="79479"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76896" e_stop="76998"/>
            <exon e_start="78086" e_stop="79479"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76896" e_stop="76998" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="76999" i_stop="78085" i_length="1087"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78086" e_stop="79479" e_length="1394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76896" stop="76998"/>
              <exon start="78086" stop="78769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76912" stop="76998"/>
              <exon start="78086" stop="78881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76914" stop="76998"/>
              <exon start="78086" stop="78870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76914" stop="76998"/>
              <exon start="78086" stop="78866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76914" stop="76998"/>
              <exon start="78086" stop="78837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736236" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76914" stop="76998"/>
              <exon start="78086" stop="78807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76924" stop="76998"/>
              <exon start="78086" stop="78689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76931" stop="76998"/>
              <exon start="78086" stop="78322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76935" stop="76998"/>
              <exon start="78086" stop="78518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76954" stop="76998"/>
              <exon start="78086" stop="78659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76963" stop="76998"/>
              <exon start="78086" stop="78405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76968" stop="76998"/>
              <exon start="78086" stop="78892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78086" stop="78549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78130" stop="78695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78266" stop="78606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78429" stop="79020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78441" stop="78924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78776" stop="79451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78777" stop="78961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78805" stop="79107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79025" stop="79479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268225" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTCTTATTTTTATGAGAAAGAGAGCTTCAATCTCACCCTAATCTGCTGGAGAATCAGCTGAATTTCGTCGATTAATCACATTTCTGCTTCAATATTCATG : GCACCTATAAAGGGCCTTCTTTCTCTACAACGAACTGCATTAGCTCAGCGTTCTAGTGAAAGATGGGGCCAATATGGTAGGTTATTTAGCACTCAGGCTGCATCAACTGCTAGCACTCCCCAACCTACACCCCCACCCCCACCTCCCGAGAGGACTCACTTTGGTGGCCTTAAAGATGAGGATCGTATTTTCACAAATCTCTACGGATTGCATGACCCTTACCTCAAAGGTGCCATGAAGCGAGGAGATTGGTACAGAACAAAAGATCTTGTCATCAAGGGTTCTGACTGGATCGTGAATGAAATGAAGAAATCTGGTCTTCGAGGACGTGGTGGTGCTGGTTTTCCATCTGGTCTCAAATGGTCCTTCATGCCAAAGACAACAGATGGCCGTCCTTCATATCTTGTCGTCAATGCTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATCATGCGGCATGACCCACACAAGTTGTTGGAAGGCTGTCTGATTGCAGGAGTGGGGATGAGAGCTAGAGCTGCTTATATTTATATCAGGGGAGAGTATGTGAATGAAAGGTTGAGCCTTCAGAAGGCTAGACAAGAAGCCTATGAAGCTGGATTGTTGGGGAAAAATGCTTGTGGATCTGGTTATGATTTTGACGTATATATTCATTTTGGTGCTGGTGCCTATATTTGTGGTGAAGAGACAGCTCTTCTGGAGAGCCTTGAGGGCAAACAAGGCAAACCAAGATTGAAGCCTCCATTTCCAGCTAATGCAGGACTATATGGATGTCCAACAACTGTTACAAATGTTGAAACAGTAGCTGTTTCACCAACCATCTTAAGGCGTGGTCCAGAGTGGTTTGCTAGTTTTGGCCGGAAGAATAATGCCGGGACAAAGCTGTTTTGCATCTCAGGCCATGTTAACAAGCCCTGTACAGTTGAAGAGGAAATGAGTATTTCATTGAAGGAGCTGCTAGAGAGGCACTGTGGTGGTGTGCGTGGAGGATGGGACAATTTGCTTGCTGTTATACCAGGAGGTTCATCTGTTCCACTGCTTCCCAAGAACATATGTGAGGATGTACTTATGGATTTTGATGCACTCAAAGCTGTGCAGTCAGGGTTGGGAACTGCTGCTGTAATTGTCATGGACAAGTCAACTGATGTTGTAGATGCAATTGCAAGGCTCTCGTACTTCTACAAGCACGAGAGTTGTGGTCAATGTACACCATGTAGGGAAGGCACAGGATGGCTTTGGATGATCATGGAAAGAATGAAGGTTGGCAATGCAAAGTTGGAAGAGATTGACATGCTCCAAGAGGTGACAAAACAGATTGAAGGGCACACTATTTGTGCCTTGGGTGACGCTGCTGCTTGGCCAGTACAGGGTCTTATTAGGCACTTTAG</gDNA_template>
            <first_frame> F  F  L  F  L  *  E  R  E  L  Q  S  H  P  N  L  L  E  N  Q  L  N  F  V  D  *  S  H  F  C  F  N  I  H   : G  T  Y  K  G  P  S  F  S  T  T  N  C  I  S  S  A  F  *  *  K  M  G  P  I  W  *  V  I  *  H  S  G  C  I  N  C  *  H  S  P  T  Y  T  P  T  P  T  S  R  E  D  S  L  W  W  P  *  R  *  G  S  Y  F  H  K  S  L  R  I  A  *  P  L  P  Q  R  C  H  E  A  R  R  L  V  Q  N  K  R  S  C  H  Q  G  F  *  L  D  R  E  *  N  E  E  I  W  S  S  R  T  W  W  C  W  F  S  I  W  S  Q  M  V  L  H  A  K  D  N  R  W  P  S  F  I  S  C  R  Q  C  *  *  K  *  T  W  N  L  *  R  Q  G  N  H  A  A  *  P  T  Q  V  V  G  R  L  S  D  C  R  S  G  D  E  S  *  S  C  L  Y  L  Y  Q  G  R  V  C  E  *  K  V  E  P  S  E  G  *  T  R  S  L  *  S  W  I  V  G  E  K  C  L  W  I  W  L  *  F  *  R  I  Y  S  F  W  C  W  C  L  Y  L  W  *  R  D  S  S  S  G  E  P  *  G  Q  T  R  Q  T  K  I  E  A  S  I  S  S  *  C  R  T  I  W  M  S  N  N  C  Y  K  C  *  N  S  S  C  F  T  N  H  L  K  A  W  S  R  V  V  C  *  F  W  P  E  E  *  C  R  D  K  A  V  L  H  L  R  P  C  *  Q  A  L  Y  S  *  R  G  N  E  Y  F  I  E  G  A  A  R  E  A  L  W  W  C  A  W  R  M  G  Q  F  A  C  C  Y  T  R  R  F  I  C  S  T  A  S  Q  E  H  M  *  G  C  T  Y  G  F  *  C  T  Q  S  C  A  V  R  V  G  N  C  C  C  N  C  H  G  Q  V  N  *  C  C  R  C  N  C  K  A  L  V  L  L  Q  A  R  E  L  W  S  M  Y  T  M  *  G  R  H  R  M  A  L  D  D  H  G  K  N  E  G  W  Q  C  K  V  G  R  D  *  H  A  P  R  G  D  K  T  D  *  R  A  H  Y  L  C  L  G  *  R  C  C  L  A  S  T  G  S  Y  *  A  L  * </first_frame>
            <second_frame>  F  S  Y  F  Y  E  K  E  S  F  N  L  T  L  I  C  W  R  I  S  *  I  S  S  I  N  H  I  S  A  S  I  F  M  :  A  P  I  K  G  L  L  S  L  Q  R  T  A  L  A  Q  R  S  S  E  R  W  G  Q  Y  G  R  L  F  S  T  Q  A  A  S  T  A  S  T  P  Q  P  T  P  P  P  P  P  P  E  R  T  H  F  G  G  L  K  D  E  D  R  I  F  T  N  L  Y  G  L  H  D  P  Y  L  K  G  A  M  K  R  G  D  W  Y  R  T  K  D  L  V  I  K  G  S  D  W  I  V  N  E  M  K  K  S  G  L  R  G  R  G  G  A  G  F  P  S  G  L  K  W  S  F  M  P  K  T  T  D  G  R  P  S  Y  L  V  V  N  A  D  E  S  E  P  G  T  C  K  D  R  E  I  M  R  H  D  P  H  K  L  L  E  G  C  L  I  A  G  V  G  M  R  A  R  A  A  Y  I  Y  I  R  G  E  Y  V  N  E  R  L  S  L  Q  K  A  R  Q  E  A  Y  E  A  G  L  L  G  K  N  A  C  G  S  G  Y  D  F  D  V  Y  I  H  F  G  A  G  A  Y  I  C  G  E  E  T  A  L  L  E  S  L  E  G  K  Q  G  K  P  R  L  K  P  P  F  P  A  N  A  G  L  Y  G  C  P  T  T  V  T  N  V  E  T  V  A  V  S  P  T  I  L  R  R  G  P  E  W  F  A  S  F  G  R  K  N  N  A  G  T  K  L  F  C  I  S  G  H  V  N  K  P  C  T  V  E  E  E  M  S  I  S  L  K  E  L  L  E  R  H  C  G  G  V  R  G  G  W  D  N  L  L  A  V  I  P  G  G  S  S  V  P  L  L  P  K  N  I  C  E  D  V  L  M  D  F  D  A  L  K  A  V  Q  S  G  L  G  T  A  A  V  I  V  M  D  K  S  T  D  V  V  D  A  I  A  R  L  S  Y  F  Y  K  H  E  S  C  G  Q  C  T  P  C  R  E  G  T  G  W  L  W  M  I  M  E  R  M  K  V  G  N  A  K  L  E  E  I  D  M  L  Q  E  V  T  K  Q  I  E  G  H  T  I  C  A  L  G  D  A  A  A  W  P  V  Q  G  L  I  R  H  F   </second_frame>
            <third_frame>   F  L  I  F  M  R  K  R  A  S  I  S  P  *  S  A  G  E  S  A  E  F  R  R  L  I  T  F  L  L  Q  Y  S  W :   H  L  *  R  A  F  F  L  Y  N  E  L  H  *  L  S  V  L  V  K  D  G  A  N  M  V  G  Y  L  A  L  R  L  H  Q  L  L  A  L  P  N  L  H  P  H  P  H  L  P  R  G  L  T  L  V  A  L  K  M  R  I  V  F  S  Q  I  S  T  D  C  M  T  L  T  S  K  V  P  *  S  E  E  I  G  T  E  Q  K  I  L  S  S  R  V  L  T  G  S  *  M  K  *  R  N  L  V  F  E  D  V  V  V  L  V  F  H  L  V  S  N  G  P  S  C  Q  R  Q  Q  M  A  V  L  H  I  L  S  S  M  L  M  K  V  N  L  E  P  V  K  T  G  K  S  C  G  M  T  H  T  S  C  W  K  A  V  *  L  Q  E  W  G  *  E  L  E  L  L  I  F  I  S  G  E  S  M  *  M  K  G  *  A  F  R  R  L  D  K  K  P  M  K  L  D  C  W  G  K  M  L  V  D  L  V  M  I  L  T  Y  I  F  I  L  V  L  V  P  I  F  V  V  K  R  Q  L  F  W  R  A  L  R  A  N  K  A  N  Q  D  *  S  L  H  F  Q  L  M  Q  D  Y  M  D  V  Q  Q  L  L  Q  M  L  K  Q  *  L  F  H  Q  P  S  *  G  V  V  Q  S  G  L  L  V  L  A  G  R  I  M  P  G  Q  S  C  F  A  S  Q  A  M  L  T  S  P  V  Q  L  K  R  K  *  V  F  H  *  R  S  C  *  R  G  T  V  V  V  C  V  E  D  G  T  I  C  L  L  L  Y  Q  E  V  H  L  F  H  C  F  P  R  T  Y  V  R  M  Y  L  W  I  L  M  H  S  K  L  C  S  Q  G  W  E  L  L  L  *  L  S  W  T  S  Q  L  M  L  *  M  Q  L  Q  G  S  R  T  S  T  S  T  R  V  V  V  N  V  H  H  V  G  K  A  Q  D  G  F  G  *  S  W  K  E  *  R  L  A  M  Q  S  W  K  R  L  T  C  S  K  R  *  Q  N  R  L  K  G  T  L  F  V  P  W  V  T  L  L  L  G  Q  Y  R  V  L  L  G  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0014P22.2" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76960" stop="76998"/>
                    <exon start="78086" stop="79477"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1431</number_coding_nucleotides>
                  <number_encoded_amino_acids>477</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISSINHISASIFMAPIKGLLSLQRTALAQRSSERWGQYGRLFSTQAASTASTPQPTPPPPPPERTHFGGLKDEDRIFTNLYGLHDPYLKGAMKRGDWYRTKDLVIKGSDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKTTDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYVNERLSLQKARQEAYEAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSISLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 217 chains have been computed
$ 
$ memory statistics:
$ 524688 bytes spliced alignments in total
$ 198 spliced alignments have been stored
$ 2649 bytes was the average size of a spliced alignment
$ 35080 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1754 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 222 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:11:56
-->
