<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:15:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585336" ref_strand="+" ref_description="SGN-U585336 Tomato 200607#2 [15 ESTs aligned] (*GB) gi|147805940|emb|CAN61223.1| (e_value=2e-135) hypothetical; (*ATH) AT1G11200.1 (e_value=7e-126) | Symbol: None | expressed protein, contains Pfam profile PF03619: Domain of unknown function | chr1:3753365-3755638 FORWARD | Aliases: T28P6.25; (*SWP) sp|Q3TPR7|T184C_MOUSE (e_value=9e-36) Transmembrane protein 184C OS=Mus musculus GN=Tmem184c; ">
      <seq>attcacaatactctgcacgaatttgttgtcactatcttcattcttgatttattatactgtaagtagtgcaataatttccagaaacatactattgtttgattctttctttgtttttgtgttttcggtgtgattgatgataacttttctaccatcttcttcggtctatgcggatcttgataaatttctggtgccccagaagtcgaaagggatatggatattttttgtatttattcaatttgctgtgtattggtttggtttggttttttgtttttcaagaaaacattctattttgattcctcaattgtaaaatctgtatttttaactaaaagttcaatatgtaccttgaatcttgatttaaaatcaaattcttgttatatatccggttccgtagaagtcaaatggatatgggtgttttttgtatttattgaatttgcgatgtattggtttgggttgtattttgtttttcaagaaaacatcttattttgattcccccgaatgtaaaatctgtatctttaactaaaaattcaacatgccccttgaatcttgattttaaatcaaattggtggatagatatcaagctcaagttttctcaaatttgatattctgttgaagagttgtatgttggtaaattttgtgtgtggttctctgaccttgataaaattgagaattggtttgcacgtttagttgaaaagtgcaggcagttgaaaaattggtgaacaccagtataaaggtctttggtatttgatttgcaggaggagctttgtgttgtgttcttgcaaggcttggtaaaatatggactttgctagtatggaccgtgcacaactcactatggtgggatcaggattttctgctttgctttcgatgcatttcacgatacagctcttgtcacaacacctcttcttctggaaaaacccaaaggagcaaaaggcaataatcatgattatatgtatggctcccctttatgccattgactcgtttgtgggtttgttagatattcgtggaagcaaaacatttttcatgtttctagactcagttaaagaatgctatgaggctgtggcaattgccaaatttttggctttgatgtatagttatttgaatatatccatcagcaaaaacattgtgcctgatgaaatcaaggggagggaaattcatcattcctttccgatgactctatttcagcctcgcactgctcacttagatcaccggacactgaaacttctcaagcattggacatggcagtttgtcattatccgtccagcatgctctatcttgatgatcacgttgcagattcttgggttgtatccgaattggctcagctggacgtttaccatcattctcaatatttcattctcagtggccatgtactccttggttgttttctaccatgttttctcaaaggaactgcagccacacaaaccactttcaaagttcatctgcattaaagggatagttttcttcagcttttggcaggggttgctggttaaaattctagtctcgtggggaattatcaaatctcaccatttttggttggatgtggagcaccttcaggaagccattcagaatgttttaatttgtgtggagatggttttcttttctgttatgcagcaatatgcataccacgtggctccttacagtggtgatgtcgaagcaaagttgaaactgaaaaaggatgactaagtcgatgcacaagacgttggtgtgaatagacacttttcctctgtgatcttgcatttaccaccagtcgccgtgtgtaatgcaagtttttattgttgtgtaacctgttgatacggctcaggaaggtcttaagataactaattttcgcgtgtgttagcaaagaaggaaatttctatcatttcctctgataaccagtttttactcttttgtggttagacttcttgtagttatatcagtaatttttcttcatgagaggctggtgtccctgccggcacctgcaacaagcttgattgcgactttgtaagtaatcattttcttaattatcttgagaatatcatgactatgtgaatgctctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="+" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="501" stop="5556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="801" g_stop="1856" g_length="1056"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1056" r_length="1056" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1857" i_stop="1978" i_length="122">
            <donor d_prob="0.409" d_score="1.00"/>
            <acceptor a_prob="0.546" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1979" g_stop="2101" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1057" r_stop="1179" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2102" i_stop="2764" i_length="663">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2765" g_stop="3055" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1180" r_stop="1470" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3056" i_stop="4695" i_length="1640">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4696" g_stop="5257" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1471" r_stop="2032" r_length="562" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="+" ref_id="SGN-U585336" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2032</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="801" e_stop="1856"/>
          <exon e_start="1979" e_stop="2101"/>
          <exon e_start="2765" e_stop="3055"/>
          <exon e_start="4696" e_stop="5257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACAATACTCTGCACGAATTTGTTGTCACTATCTTCATTCTTGATTTATTATACTGTAAGTAGTGCAATAATTTCCAGAAACATACTATTGTTTGATTCTTTCTTTGTTTTTGTGTTTTCGGTGTGATTGATGATAACTTTTCTACCATCTTCTTCGGTCTATGCGGATCTTGATAAATTTCTGGTGCCCCAGAAGTCAAAAGGGATATGGATATTTTTTGTATTTATTCAATTTGCTGTGTATTGGTTTGGTTTGGTTTTTTGTTTTTCAAGAAAACATTCTATTTTGATTCCTCAATTGTAAAATCTGTATTTTTAACTAAAAGTTCAATATGTACCTTGAATCTTGATTTAAAATCAAATTCTTGTTATATATCCGGTTCCGTAGAAGTCAAATGGATATGGGTGTTTTTTGTATTTATTGAATTTGCGATGTATTGGTTTGGGTTGTATTTTGTTTTTCAAGAAAACATCTTATTTTGATTCCCCCGAATGTAAAATCTGTATCTTTAACTAAAAATTCAACATGCCCCTTGAATCTTGATTTTAAATCAAATTGGTGGATAGATATCAAGCTCAAGTTTTCTCAAATTTGATATTCTGTTGAAGAGTTGTATGTTGGTAAATTTTGTGTGTGGTTCTCTGACCTTGATAAAATTGAGAATTGGTTTGCACGTTTAGTTGAAAAGTGCAGGCAGTTGAAAAATTGGTGAACACCAGTATAAAGGTCTTTGGTATTTGATTTGCAGGAGGAGCTTTGTGTTGTGTTCTTGCAAGGCTTGGTAAAATATGGACTTTGCTAGTATGGACCGTGCACAACTCACTATGGTGGGATCAGGATTTTCTGCTTTGCTTTCGATGCATTTCACGATACAGCTCTTGTCACAACACCTCTTCTTCTGGAAAAACCCAAAGGAGCAAAAGGCAATAATCATGATTATATGTATGGCTCCCCTTTATGCCATTGACTCGTTTGTGGGTTTGTTAGATATTCGTGGAAGCAAAACATTTTTCATGTTTCTAGACTCAGTTAAAGAATGCTATGAGGCTGTGGTAAGTTGCTACCGTGTGATTGACATGCCTTTGTTAATGGCGCATACGCTGTCTAATCGTATGCTTTCTAGTTTGACAGAAAAAATAAAGCAAAACATGTTTCATTTGATGTCTTTTTTCAGGCAATTGCCAAATTTTTGGCTTTGATGTATAGTTATTTGAATATATCCATCAGCAAAAACATTGTGCCTGATGAAATCAAGGGGAGGGAAATTCATCATTCCTTTCCGATGACTCTATTTCAGGTGTGATTATACTTATGTTTAGCTTTCCTCTCAATATGTGCCAGATGATTATGCATTCAATGTATTTATAACTGATATCAAAATTAGTCTCCCTACCCCACAAAGGTAGGGTAAGGTTTGTGTACATCCTACCCCCTCCCCAAACCCCACTTGTGGGATTACGCTAGGTATGTTGTTGTAACCATTGCGTTTGAATCTAACCACTATTGGACTTTCCCCCTTTAGTGTTTACTGTGTGATAATATCATTTTGAAGAACTTTAGGGGCAAGGGGAAGTCTATCCCCCAGTATATTTCTTTTTATTCTGAAGCACATGGCTTCTAGTCGTCTAAGATAGACAACCAAGTTATTTGAGTTATTACCTAATGTAACCAATTAATTATAATGACTCTATATCCTAAAGAAATTATATTAATCAGATCCAGTCTAAGTGCAGATATAAACTGCTTGCTCTTTCATATCCGGATGACTTGGAGGCTTGGCTTGCTAACACTTACATAAGTTTTCTTGTAATCTGGGTGATGTGAGATATTAGGTTGAAGTTTGTCAGTTGTTTAATTGAGCTTATGCCTTTCTTACTCAATTTCACTAGAGTGATTGATAAAGTAGTATTAGAATGGTGTATTTTAACCATGCATCTAATGTTCTTCCTGCCAATTGCAGCCTCGCACTGCTCACTTAGATCACCGGACACTGAAACTTCTCAAGCATTGGACATGGCAGTTTGTCATTATCCGTCCAGCATGCTCTATCTTGATGATCACGTTGCAGATTCTTGGGTTGTATCCGAATTGGCTCAGCTGGACGTTTACCATCATTCTCAATATTTCATTCTCAGTGGCCATGTACTCCTTGGTTGTTTTCTACCATGTTTTCTCAAAGGAACTGCAGCCACACAAACCACTTTCAAAGTTCATCTGCATTAAAGGGATAGTTTTCTTCAGCTTTTGGCAGGTAGAGACTCCAACTCATCTCCTCTTACCCCCCCCCCCCCCCCAAAATCTAGAAATAAAATTAATCCTTATCCGTCTCTTGAAGTTTTGGTCAAGGTAAGTGAATGCAACTATTTGTTTTACATATGTGATAATTATTTATGCTAAGATCGACATCCTGTCAGCGATGGCTTTCTTTGCTTTTCACTTTTTAAAGCGTTAATTGAAAGAAAGGATGAAAATATTTGTAATCTATAGAGGCAGGCAGGCAGCATAAGGTTATAGTAGCCCTACTCCCAAGGGCATGATTGACTGGTTGAGGTGTAAGAGTAGCGAGGTTTGAATACCCAGTACGAAGCGTAAAACCAAATCCAAAATATGTCAAGTCTTGCAATTCATAACTAGTTATAGAAGTCCCTTAATGAGTTTCTCGTTACATGTACTGAAATGGAGCCAAGCCTTTAAGGGACTTCTATTACTAATTATAAATCAAAAGACTTGACTTATTTTAGATTTGGTTTTACCTACGTGTAAGTTTCTGCTAATTTTGACCAACAATCAATACTTATTAAGTTCCTCTGATGCTGTTTCCTCACTGCGTCTTTGTGGGAGTGGTATTGGGCAGGAGGCACAGATTTTGCTTATTTGCAGGGATGGACTTCATTTGGGTTTTGCCTCATGCCAAACCTTTTACTGTTATCCTCTACATCTGTGTGTAAACCTGTAATGGAACCAAAACACACCAAGGGACACTGAACTATCTATGTACTTCTAGGTTTATCTGTAGCTTGGGAAAATGATTTCTATATGGAGGACTCGGTTTCATTATTTCATTATTTAGACAAACAATATGTAAAAATCTGTGTTGCTCGGACTCTTCAAAAATGTTGCGCATGTCGAATTCTCCAAAAGTAGTGTATTTTTGGTAATGTGACGCGGGTGCAACATCGAAAGTGAATAGTCCATGCAACTTAGGTCAGGATGATTGAGACATAGAAGAGTGCACAGATGGGTTCTGCGGTTGAGCTCACATTTTATCTGGCCAAACAAGTGAAAATTAAAGGTCTTTAATATGTCTGCCTCCAACCTCCTCTAAAAGGTTGTCATTAGGAGTAGATAGCTGTTAATCTCTTACAATAATCTCCTCTGAAGTTTGATTGGTGGATGGATATCCATTGTGTGAGTTTGAGGCATGGAATCACTGCAATGAACTGATCATAGGATAATATAAGTGAATCCTGTTAGTTGCTGCAGGGAAACGTGATGTAAAGGTTAGCCTCATGTCACGAGTTCAAACCCTGACGCAGACCAACGGCAAGGTATTTAAGTGGAGAAAGGTCTAGAGCAGATCCATTATCCACTGAGATTCAAATCACGAGCCACTGACTCTCGGGATTTCTAGGTTATAAAAAAAATGGTGTGTCCTGCTAGCCAACAATCATCATCAAGCAAAGGATACAAACTACCACCACTAAAATATTGAATCCTCTTGACTTGCATGCCATTACTTTTGAAATTCTTTCAACTTCTCAAAAAGGAGGTATTGGTTTCTTTGTTATGTTGTTTCTGTGAGGAAGCCTCTCTCCGTTCGATGCTTTGCTTGACTGAGATATGTTTTTGCCACCACTGGTGCAATAAACTATTCATCTCTGAATTTTGCAGGGGTTGCTGGTTAAAATTCTAGTCTCGTGGGGAATTATCAAATCTCACCATTTTTGGTTGGATGTGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAAT</genome_strand>
        <mrna_strand>ATTCACAATACTCTGCACGAATTTGTTGTCACTATCTTCATTCTTGATTTATTATACTGTAAGTAGTGCAATAATTTCCAGAAACATACTATTGTTTGATTCTTTCTTTGTTTTTGTGTTTTCGGTGTGATTGATGATAACTTTTCTACCATCTTCTTCGGTCTATGCGGATCTTGATAAATTTCTGGTGCCCCAGAAGTCGAAAGGGATATGGATATTTTTTGTATTTATTCAATTTGCTGTGTATTGGTTTGGTTTGGTTTTTTGTTTTTCAAGAAAACATTCTATTTTGATTCCTCAATTGTAAAATCTGTATTTTTAACTAAAAGTTCAATATGTACCTTGAATCTTGATTTAAAATCAAATTCTTGTTATATATCCGGTTCCGTAGAAGTCAAATGGATATGGGTGTTTTTTGTATTTATTGAATTTGCGATGTATTGGTTTGGGTTGTATTTTGTTTTTCAAGAAAACATCTTATTTTGATTCCCCCGAATGTAAAATCTGTATCTTTAACTAAAAATTCAACATGCCCCTTGAATCTTGATTTTAAATCAAATTGGTGGATAGATATCAAGCTCAAGTTTTCTCAAATTTGATATTCTGTTGAAGAGTTGTATGTTGGTAAATTTTGTGTGTGGTTCTCTGACCTTGATAAAATTGAGAATTGGTTTGCACGTTTAGTTGAAAAGTGCAGGCAGTTGAAAAATTGGTGAACACCAGTATAAAGGTCTTTGGTATTTGATTTGCAGGAGGAGCTTTGTGTTGTGTTCTTGCAAGGCTTGGTAAAATATGGACTTTGCTAGTATGGACCGTGCACAACTCACTATGGTGGGATCAGGATTTTCTGCTTTGCTTTCGATGCATTTCACGATACAGCTCTTGTCACAACACCTCTTCTTCTGGAAAAACCCAAAGGAGCAAAAGGCAATAATCATGATTATATGTATGGCTCCCCTTTATGCCATTGACTCGTTTGTGGGTTTGTTAGATATTCGTGGAAGCAAAACATTTTTCATGTTTCTAGACTCAGTTAAAGAATGCTATGAGGCTGTG..........................................................................................................................GCAATTGCCAAATTTTTGGCTTTGATGTATAGTTATTTGAATATATCCATCAGCAAAAACATTGTGCCTGATGAAATCAAGGGGAGGGAAATTCATCATTCCTTTCCGATGACTCTATTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGCACTGCTCACTTAGATCACCGGACACTGAAACTTCTCAAGCATTGGACATGGCAGTTTGTCATTATCCGTCCAGCATGCTCTATCTTGATGATCACGTTGCAGATTCTTGGGTTGTATCCGAATTGGCTCAGCTGGACGTTTACCATCATTCTCAATATTTCATTCTCAGTGGCCATGTACTCCTTGGTTGTTTTCTACCATGTTTTCTCAAAGGAACTGCAGCCACACAAACCACTTTCAAAGTTCATCTGCATTAAAGGGATAGTTTTCTTCAGCTTTTGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTTGCTGGTTAAAATTCTAGTCTCGTGGGGAATTATCAAATCTCACCATTTTTGGTTGGATGTGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571428" ref_strand="-" ref_description="SGN-U571428 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|30681779|ref|NP_172528.2| (e_value=7e-116) transducin / WD-40 repeat protein family [Arabidopsis thaliana]; (*ATH) AT1G10580.1 (e_value=5e-118)  Symbol: None | transducin family protein / WD-40 repeat family protein, similar to splicing factor hPRP17 (gi:3283220); contains 7 WD-40 repeats (PF00400);similar to ESTs emb:F15435 and dbj:AUO62661 | chr1:3491282-3493738 REVERSE | Aliases: T10O24.2... ; (*SWP) sp|O60508|PRP17_HUMAN (e_value=6e-112) Pre-mRNA-processing factor 17 OS=Homo sapiens GN=CDC40; ">
      <seq>ggtttttccctaagcatggtcatttgattttgtcagctgggatggatacaaaggtgaaaatttgggatgtttacaattccggtaaatgtatgaggacttacatggggcatacaaaggcagtgagggatatttggtttagcaatgacgggacgaagtttttgacagctggatatgataagtacattaagtattgggatacagaaacaggacaagtaattcaaacgttcacgacgggtaagataccctatgtggtgaggcttaatcctgatgaagataagcagaatgtacttttggctggtatgagtgataagaagattgtgcagtgggatataaacagtggacagattacacaagagtacgatcaacatctgggggcagttaatacaattacctttgtggataataacagaaggtttgtgacctctagtgatgataaatcactacgtgtttgggaatatggtattccggttgttatcaagtatataagtgaaccccatatgcattccatgccatctatttcgccccatccaaatgggaattggattgcagcacaaagtttggataaccagattcttatttacagtacgcgagagagatttcagctgaataaaaagaaaagatttgctggacacattgtcgctggttatgccctgccaggtcaatttctcacctgatggacggtttgtcttctcaggagatggtgaaggcagatgctggttttgggattggaaatcgtgtaaggtcttcagaactctcaagtgtcatgatggggtctgtattggtgcagagtggcatcctctggaacaaagtaaagttgctacttgtggctgggatggtttgatcaaatactgggactagtttttgagcagccatttttgtctccatttactttgaggacaacttgttcaacatgggttggctagaggaatcaagactcttatatgcagtgggtggtcaactcatttgggacacgttggctggaaaaaccaagctatgaatgcattttttagtcaatgctagtctttacctcagtaaaacaggttttctcagatggttttctttggttgaggttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="-" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="9802" stop="5829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9502" g_stop="8653" g_length="850"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="851" r_length="851" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8652" i_stop="6351" i_length="2302">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6350" g_stop="6128" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="852" r_stop="1074" r_length="223" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="-" ref_id="SGN-U571428" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1073</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571428" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9502" e_stop="8653"/>
          <exon e_start="6350" e_stop="6128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAAATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAGGGATATTTGGTTTAGCAATGACGGGACGAAGTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACGTTCACGACGGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAAGATAAGCAGAATGTACTTTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAACAGAAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCGCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTACAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATG-CCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAGAACTCTCAAGTGTCATGATGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGGAACAAAGTAAAGTTGCTACTTGTGGCTGGGATGGTTTGATCAAATACTGGTAAGCTTTATGATCCTTGCTTTAGTAATTATGTTTATGTAGGTTAAACTTTTATTGCTCTGTCCCATCGTAGAATTTAGTTGTTAATGTAGTCATGACACGGATAGTGAAAAACGCTCTCGTTGTATATCCACATATGCGATTCCATATTTCAGATTAAATTAGCTTTAGTGTGACCTGAGACTTATGTGTTGATTAGAACTGCCACTGAATCTGTCACACCTACCTTGATCCACGGATGAACTACTCATTACCTATTTCCTCCAAAAAAAAAAGAAAAAGAAGAAGCCCACAACAACAAAAAAGAGTTTTAGACATCTAGCCTTTAACACGTATATGAGAGTGTAGTGACTCCTTCAAAACATTCTAAATACACCAAAAGATGCATGGTGGAACCATTTGCCGCATCATCGTCACCGATTGCCAACTCTCCAGAGGCCCCTGGTAGCACAAGCTTCCTTATCAGTGTAGGGCATTACTCAACTAACCCCCAAAAAATTCAAAAACATACTCCAGATGTCTTTGGCAACTTGATAGTGAAGTAGAAGGTGGCTGATTCTTTCAGATTCTTGGGTAGCACATACCACCTGTTGCAGAGCACAATCCTCTTTCAGTGAGATATTTTTGGGATAGACAGGCTTCTAAAATAGCTAACTAGCTGAAACAGGCTATCTTTGTTGGATTTTTCACCTTCCAAACTTGTTTCCTAAAGACAATACTTCAGTGATACCACTACTGCTCCAAAGATTAGTATAGCATGATTTTTGATTGAAAAAATACCATTTTTACGACAACTGCATGCCATTACATCTTTCAGAAGAAAATGGAGAATCCATGTCAACTATCTCATTTTCCTCCTGGTCTAGGATATTCCTTCTAAATGTTTCCTTGCCTACCGTTTATGATTGATGCTTGGGGCTGTTCAGTTAATTGGTAGAGTCCTGGAAAATTTTTCTGCAAAATGCTGTTCCCAGCCATTTATCGTCCCAAAATTATATAAATTCTCCATTCTCAACCATGAAATAAGTGTTTCTACTGAAGACTTTCCCCAATTTGATTGTGTATGTTGTGATATGAAGTGTTAGGGACTTCGGTATGCCAGTGATTTAGCTCTCTGTGTTTACCTTAATAATCTGCCTCCAAAGTGATTATTCTTCACGTCACACATTTTTTAACTTTGTACCTTTCTTGCATTGCATATATATTGTATTTGTGAATTAGTTTTTCACGTTGCATATAGTGTCTCTCTTCATTTGCGTCTATCTTCATGAAGATGTGCTCTTGAAGCCTGATCTTGGTGCTTTTCTGCAATTTTTTGTTACAGCATTTGCACTTCGTTTTGTGACTTGATGAGCTTGTTTTTGAATCAAGAGCAGAGATGAATCTATTGAGAATAGAAAGGGAAAAAATGGAAAAGTGAATTTTGTGGATTTTTTCACTGACTGGGAAAAATATGAACTTCGTGGATTTTTTCTTCTTTTTTCAATGCCTGCTGTCATAGAAGGGGGAATGAAGGAGGGGGGAGGGGGGAGGTATGCTAGGGAAGAAACTAGTAGCACAAGGTCCAGGAAGTAACAATCTGCCTCATTGCTTGATTGTCTGCCATTGCAACTAAAACATAAAAGACTTTGAATTAGGATTTTCAAATCCTAAAATGACAACTGCAACTTAATCCAATTTCAAAAAGAAAAAAACATCATACCTTTAATGGATCATGTTAAATTCATGACTTCTGAAAGACAAAAAGAACCAAATTTTAAGGAAGCATCTTCCCTGACTTGTCACGGATTTTTTTAAACTTCCACTGCAATTTGAAGTGAAAGGACCCTTCTAAAGTTATGTTTATGAGGTCATCTGTCGGTTTCTGTGTCTCTTCTTGGCAATTCCGTGGGAGATTGGTGCAGTTCATCTTCCAATTAATGTTTTTGAGACTTCTGTCAGTTTCCGTAAATGTATCCTTGTCAATCCCTTGAGAGATGATAGAGTGTAACTTACTACCAACAAGAGAGGGTTAAAGCACTTTCACTCGTGCTGTTTTCTGTCATTAAAATATCTGTTATTGGGGTGAATGGCCTCTATTTTGGGGTAGGGGTTCTGTTATCAGTAGATAGATTTCTCATCCAGAATATCAATTAGGTCTATCCTTCTCTTGCTCTGGAGGATAACCATATTTTGAGTTCGCTTCTTAGTTCTTATTGTGTTGCCTCTTGTTTGTACACGTGTGCTTGTATTTTGAGACAGATTCACTTTTCTTATTCCTGGTGTTCAACAAACATGCTAACCTCATCTCTGGTGTTTTCAGGGACTAGTTTTTGAGCAGCCATTTTTGTCTCCATTTACTTTGAGGACAACTTGTTCAACATGGGTTGGCTAGAGGAATCAAGACTCTTATATGCAGTGGGTGGTCAACTCATTTGGGACACGTTGGCTGGAAAAACCAAGCTATGAATGCATTTTTTAGTCAATGCTAGTCTTTACCTCAGTAAAACAGGTTTTCTCAGATGGTTTTCTTTGGTTGAGGTTGT</genome_strand>
        <mrna_strand>GGTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAAATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAGGGATATTTGGTTTAGCAATGACGGGACGAAGTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACGTTCACGACGGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAAGATAAGCAGAATGTACTTTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAACAGAAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCGCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTACAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAGAACTCTCAAGTGTCATGATGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGGAACAAAGTAAAGTTGCTACTTGTGGCTGGGATGGTTTGATCAAATACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTAGTTTTTGAGCAGCCATTTTTGTCTCCATTTACTTTGAGGACAACTTGTTCAACATGGGTTGGCTAGAGGAATCAAGACTCTTATATGCAGTGGGTGGTCAACTCATTTGGGACACGTTGGCTGGAAAAACCAAGCTATGAATGCATTTTTTAGTCAATGCTAGTCTTTACCTCAGTAAAACAGGTTTTCTCAGATGGTTTTCTTTGGTTGAGGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585855" ref_strand="+" ref_description="SGN-U585855 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|5091552|gb|AAD39581.1|AC007067_21 (e_value=5e-56) T10O24.21; (*ATH) AT1G10580.1 (e_value=4e-58)  Symbol: None | transducin family protein / WD-40 repeat family protein, similar to splicing factor hPRP17 (gi:3283220); contains 7 WD-40 repeats (PF00400);similar to ESTs emb:F15435 and dbj:AUO62661 | chr1:3491282-3493738 REVERSE | Aliases: T10O24.2... ; (*SWP) sp|Q9DC48|PRP17_MOUSE (e_value=2e-12) Pre-mRNA-processing factor 17 OS=Mus musculus GN=Cdc40; ">
      <seq>aaaattaggtttctaatcaaaatataaagctttcgccatttttcatagtttgtgcgtatcccatggatcttttacaatcttcatacgaggatgaatcgccggattcttccccaatacgcatgcttccttctaaatccgccgcccctaaagtcgacgacaccatgctagccctaacagtcgccggcgaagctgccagagctcaatccaaaccccttgacccgacccagcacgttgttggattcaacccgacgtacgaacaactatgggcaccaatttgtggtccagctcacccgtacgcaaaggacgggttagctcaaggactcagaaatcacaagttagggttcgtagaggacgcgtctattgagccctttgtattcgatgagcagtacaatacttttcagaagtatgggtacgctgttgatccctctgaaaatagctacatcggtgatttggaaaaaatgaaggaatgtgatgcaatttctgtgtataacataccacagcatgaacagaagaagaggaagttagagaagaagaaggaaaaaatggaggaggagggtgatgagcaggatgtggatatgacggaagttgaaaatccgtccaccgacacatggttgatgaagaacaggaagagtccatgggctggaaagaaagaagggttgcaagtggaattatctgaggagcagaaaaaatatgctgaagagtatgctaanaanannnngaagaaagagntggtganaaagatanggnggagcctatggttgaaaagagcacatttcanggtnaagaggaaaaggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="-" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="10720" stop="9322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10420" g_stop="9622" g_length="799"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="798" r_length="798" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="-" ref_id="SGN-U585855" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10420" e_stop="9622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAGGTTTCTAATCAAAATATAAAGCTTTCGCCATTTTTCATAGTTTGTGCGTATCCCATGGATCTTTTACAATCTTCATACGAGGATGAATCGCCGGATTCTTCCCCAATACGCATGCTTCCTTCTAAATCCGCCGCCCCTAAAGTCGACGACACCATGCTAGCCCTAACAGTCGCCGGCGAAGCTGCCAGAGCTCAATCCAAACCCCTTGACCCGACCCAGCACGTTGTTGGATTCAACCCGACGTACGAACAACTATGGGCACCAATTTGTGGTCCAGCTCACCCGTACGCAAAGGACGGGTTAGCTCAAGGACTCAGAAATCACAAGTTAGGGTTCGTAGAGGACGCGTCTATTGAGCCCTTTGTATTCGATGAGCAGTACAATACTTTTCAGAAGTATGGGTACGCTGTTGATCCCTCTGAAAATAGCTACATCGGTGATTTGGAAAAAATGAAGGAATGTGATGCAATTTCTGTGTATAACATACCACAGCATGAACAGAAGAAGAGGAAGTTAGAGAAGAAGAAGGAAAAAATGGAGGAGGAGGGTGATGAGCAGGATGTGGATATGACGGAAGTTGAAAATCCGTCCACCGACACATGGTTGATGAAGAACAGGAAGAGTCCATGGGCTGGAAAGAAAGAAGGGTTGCAAGTGGAATTATCTGAGGAGCAGAAAAAATATGCTGAAGAGTATGCTAAGAAGAAGGGTGAAGAAAGAGGTGGTGATAAAGATAAGGCGGAGCCTATGGTTGAAAAGAGCACATTTCATGGTAAAGAGGAAAAGGATTA</genome_strand>
        <mrna_strand>AAAATTAGGTTTCTAATCAAAATATAAAGCTTTCGCCATTTTTCATAGTTTGTGCGTATCCCATGGATCTTTTACAATCTTCATACGAGGATGAATCGCCGGATTCTTCCCCAATACGCATGCTTCCTTCTAAATCCGCCGCCCCTAAAGTCGACGACACCATGCTAGCCCTAACAGTCGCCGGCGAAGCTGCCAGAGCTCAATCCAAACCCCTTGACCCGACCCAGCACGTTGTTGGATTCAACCCGACGTACGAACAACTATGGGCACCAATTTGTGGTCCAGCTCACCCGTACGCAAAGGACGGGTTAGCTCAAGGACTCAGAAATCACAAGTTAGGGTTCGTAGAGGACGCGTCTATTGAGCCCTTTGTATTCGATGAGCAGTACAATACTTTTCAGAAGTATGGGTACGCTGTTGATCCCTCTGAAAATAGCTACATCGGTGATTTGGAAAAAATGAAGGAATGTGATGCAATTTCTGTGTATAACATACCACAGCATGAACAGAAGAAGAGGAAGTTAGAGAAGAAGAAGGAAAAAATGGAGGAGGAGGGTGATGAGCAGGATGTGGATATGACGGAAGTTGAAAATCCGTCCACCGACACATGGTTGATGAAGAACAGGAAGAGTCCATGGGCTGGAAAGAAAGAAGGGTTGCAAGTGGAATTATCTGAGGAGCAGAAAAAATATGCTGAAGAGTATGCTAANAA-NANNNNGAAGAAAGAGNTGGTGANAAAGATANGGNGGAGCCTATGGTTGAAAAGAGCACATTTCANGGTNAAGAGGAAAAGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569078" ref_strand="+" ref_description="SGN-U569078 Tomato 200607#2 [2 ESTs aligned] (*ATH) AT5G17570.1 (e_value=2e-12) | Symbol: None | tatD-related deoxyribonuclease family protein, contains Pfam profile PF01026: TatD related DNase | chr5:5792928-5794794 FORWARD | Aliases: K10A8.50, K10A8_50; ">
      <seq>tcctctatagtaaaatcatatttgatatcgaatcttcttgtattttttttaaattctatcggcaatttcttgatacatcatatccaatatctccttgccatcgggaaaattaaaaattagcagctaaaataagatcgtacaaaaccgattggtgcacattcacgaaagccttgttaaccctaggaaatacatgtggttcgagctgtcgctgagaattttagtgtgaaggggattgagaagcttttctttttggtatattacccctcaaatttcagagctcatattccagtcaggtttaacaaggctgaccaactttaatgtggtgttcttatgggtttacggatttggatttttgagttgtattatgaaattgttggagttctgagtggttacagttgtgagaccgtgttgcactagcatcttccagttaccattatctttctccagcatgtgagctttcattaagggttcgttcaaggaataagcagaataataccgacttagagtgtatcaagagaaaagaagagaagagtctggcacttttaacacccataatgctgaaactctttgattctcattgtcacctccnagatccaaggatctttaatatggtcccaaaaattatcaaaaccacgactgaaacaggagttgtccattttgcggtcaatggcgtgtcananaaanattgnnntttggnaaaggaaatgagtgaacgctacccttctntnnncnantttnnnntncntcccnggntt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="-" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="23237" stop="20577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22937" g_stop="22649" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22648" i_stop="21414" i_length="1235">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.393" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21413" g_stop="21308" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="395" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21307" i_stop="21209" i_length="99">
            <donor d_prob="0.629" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21208" g_stop="20846" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="755" r_length="360" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="-" ref_id="SGN-U569078" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22937" e_stop="22649"/>
          <exon e_start="21413" e_stop="21308"/>
          <exon e_start="21208" e_stop="20846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTATAGTAAAATCATATTTGATATCGAATCTTCTTGTATTTTTTTTAAATTCTATCGGCAATTTCTTGATACATCATATCCAATATCTCCTTGCCATCGGGAAAATTAAAAATTAGCAGCTAAAATAAGATCGTACAAAACCGATTGGTGCACATTCACGAAAGCCTTGTTAACCCTAGGAAATAGATGTGGTTCGAGCTGTCGCTGAGAATTTTAGTGTGAAGGGGATTGAGAAGCTTTTCTTTTTGGTATATTACCCCTCAAATTTCAGAGCTCATATTCCAGGTACTTAATTGTTCATTCCAAGAAAATTTCTTAAATTTCTTGTAATTGGAGTTAATGGGTGTTTGAAAAATTCAATCTTTATTACTCAGACATATGTAACAGATAGGAAGATGGTGATGGGGATAAGAAAGCCTTTGTTGCGTAGCTTTTTGCAAAATTATGTCTTTGGAGGATGGTGTTTGAGAAGTTGTAAACACAGCTTTAAGCTTCCACTTAAACCCTAAATAAGAGGGAAATTGAGACTAGCTGATTTGCTTAACGTGATTTTCAAGATTAACAATACTACAACAACAAAAACATACTAATACACTGGTGAGGGTAGGATGCATGCAAACCTCACCCTACGTAGAGAGACAGTTTATGATAGATCCTTGAAACTAGTGATGAACTGATGATAAATAGAGTGAATGTATGACTTATGTTCTCTGTTTAGTAATCCTTAGATATCCGTGAAACTCTTCTGCCACAAATGTGTGTCTTTGTTAGTAACATAAATAAATAAATACAAAAAAATGGGAGCTGCATCTAGTGACATTTTTATAGTGGTTGAGTAAACTTTTAGCGAAAATTGCTTATCTGTTGGTCCTCTTTATGTTGTTTTCCTACTTATATTATCTGTTTATTTATCCAGTTTGTAACTTGCTTACTTCTTTCTGCTTGTTCTCATTGGTTTGTTTTCTTCTTTCTGGTGTTTAGATCAATAAGAATTACTTTTACTTTATCGGGAATTAGAAATAGGAAGAATGGCTACTTTGGTTTAAAGAAAGAGGAAGAGTCGTTTCAGAATCGAGCCTGATTTATTGATGATGAATTTAAGACCATCGGAATTGGAAAATCAAATAGTTTCGTCATGTTTTTCGTTTTGATTCCGCCCACCCAGTGGTAACATTCAGATAATTTACTTCAAGCTGATACCCAATGTCTAATAGTATGAGCACCTGAGTTGCAGGTTCACCATACTGCGATTTCACTGGTTTTATTGTGTACGCTCCTTATTTGAGGTTCAAGACTAAAAATTGGTTGTAGAGATGTACGTTGAGTGTAGCCTTGTGTATGAACTTCCATTTTTGGCATAATCATATTTGTTTCAGTTCAACTTTAGGTTGTTAAGAAGACTCTAAATAGCCAAGAGAGTGACTTGGTTAGACATTAGAATTCCCAAGCAACACTTATCCTGTTTGAAAGTATTTTTCTTTAACTCAAAGCGTTACTCTCATTTTGCTGCGTGCATGCAGTCAGGTTTAACAAGGCTGACCAACTTTAATGTGGTGTTCTTATGGGTTTACGGATTTGGATTTTTGAGTTGTATTATGAAATTGTTGGAGTTCTGAGTGGTTACAGGTACTTCATTTTATTTCAGCGTTTGATTTGTGCAGATTCCTTTAAGTCATTTGCTTCTCATACATACACAAGCTAGTTACACCTTAATCTATCATACAGTTGTGAGACCGTGTTGCACTAGCATCTTCCAGTTACCATTATCTTTCTCCAGCATGTGAGCTTTCATTAAGGGTTCGTTCAAGGAATAAGCAGTATAATACCGACTTAGAGTGTATCAAGAGAAAAGAAGAGAAGAGTCTGGCAGTTTTAAGACCCATAATGCTGAAACTCTTTGATTCTCATTGTCACCTCCAAGATCCAAGGATCTTTAATATGGTCCCAAAAATTATCAAAACCACGACTGAAACAGGAGTTGTCCATTTTGCGGTCAATGGCGTGTCAGAGAAAGATTGGCGTTTGGTAAAGGAAATGAGTGAACGCTACCCTTCTATTGTTCCAAATTTTGGGCTCCATCCCTGGTTT</genome_strand>
        <mrna_strand>TCCTCTATAGTAAAATCATATTTGATATCGAATCTTCTTGTATTTTTTTTAAATTCTATCGGCAATTTCTTGATACATCATATCCAATATCTCCTTGCCATCGGGAAAATTAAAAATTAGCAGCTAAAATAAGATCGTACAAAACCGATTGGTGCACATTCACGAAAGCCTTGTTAACCCTAGGAAATACATGTGGTTCGAGCTGTCGCTGAGAATTTTAGTGTGAAGGGGATTGAGAAGCTTTTCTTTTTGGTATATTACCCCTCAAATTTCAGAGCTCATATTCCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGTTTAACAAGGCTGACCAACTTTAATGTGGTGTTCTTATGGGTTTACGGATTTGGATTTTTGAGTTGTATTATGAAATTGTTGGAGTTCTGAGTGGTTACAG...................................................................................................TTGTGAGACCGTGTTGCACTAGCATCTTCCAGTTACCATTATCTTTCTCCAGCATGTGAGCTTTCATTAAGGGTTCGTTCAAGGAATAAGCAGAATAATACCGACTTAGAGTGTATCAAGAGAAAAGAAGAGAAGAGTCTGGCACTTTTAACACCCATAATGCTGAAACTCTTTGATTCTCATTGTCACCTCCNAGATCCAAGGATCTTTAATATGGTCCCAAAAATTATCAAAACCACGACTGAAACAGGAGTTGTCCATTTTGCGGTCAATGGCGTGTCANANAAANATTGNNNTTTGGNAAAGGAAATGAGTGAACGCTACCCTTCT-NT-NNNC-NANTTTNNNNTNCNTCCCNGGNTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601021" ref_strand="+" ref_description="SGN-U601021 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ccaggtacttaattgttcattccaagaaaatttcttaaatttcttgtaattggagttaatgggtgtttgaaaaattcaatctttattactcagacatatgtaacagataggaagatggtgatggggatgagaaagcctttgttgcgtagctttttgcaaaattatgtctttggaggatggtgtttgagaagttgtaaacacagctttaagcttccacttaaaccctaaataagagggaaattgagactagctgatttgcttaacgtgattttcaagattaacaatactacaacaacaaaaacatactaatacactggtgagggtaggatgcatgcaaacctcaccctacgtagagagacagtttatgatagatccttgaaactagtgatgaactgatgataaatagagtgaatgtatgacttatgttctctgtttagtaatccttagatatccgtgaaactcttctgccacaaatgtgtgtctttgttagtaacataaataaataaatacaaaaaaatgggagctgcatctagtgacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="-" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="22952" stop="21812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22652" g_stop="22112" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="-" ref_id="SGN-U601021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22652" e_stop="22112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGTACTTAATTGTTCATTCCAAGAAAATTTCTTAAATTTCTTGTAATTGGAGTTAATGGGTGTTTGAAAAATTCAATCTTTATTACTCAGACATATGTAACAGATAGGAAGATGGTGATGGGGATAAGAAAGCCTTTGTTGCGTAGCTTTTTGCAAAATTATGTCTTTGGAGGATGGTGTTTGAGAAGTTGTAAACACAGCTTTAAGCTTCCACTTAAACCCTAAATAAGAGGGAAATTGAGACTAGCTGATTTGCTTAACGTGATTTTCAAGATTAACAATACTACAACAACAAAAACATACTAATACACTGGTGAGGGTAGGATGCATGCAAACCTCACCCTACGTAGAGAGACAGTTTATGATAGATCCTTGAAACTAGTGATGAACTGATGATAAATAGAGTGAATGTATGACTTATGTTCTCTGTTTAGTAATCCTTAGATATCCGTGAAACTCTTCTGCCACAAATGTGTGTCTTTGTTAGTAACATAAATAAATAAATACAAAAAAATGGGAGCTGCATCTAGTGACATTT</genome_strand>
        <mrna_strand>CCAGGTACTTAATTGTTCATTCCAAGAAAATTTCTTAAATTTCTTGTAATTGGAGTTAATGGGTGTTTGAAAAATTCAATCTTTATTACTCAGACATATGTAACAGATAGGAAGATGGTGATGGGGATGAGAAAGCCTTTGTTGCGTAGCTTTTTGCAAAATTATGTCTTTGGAGGATGGTGTTTGAGAAGTTGTAAACACAGCTTTAAGCTTCCACTTAAACCCTAAATAAGAGGGAAATTGAGACTAGCTGATTTGCTTAACGTGATTTTCAAGATTAACAATACTACAACAACAAAAACATACTAATACACTGGTGAGGGTAGGATGCATGCAAACCTCACCCTACGTAGAGAGACAGTTTATGATAGATCCTTGAAACTAGTGATGAACTGATGATAAATAGAGTGAATGTATGACTTATGTTCTCTGTTTAGTAATCCTTAGATATCCGTGAAACTCTTCTGCCACAAATGTGTGTCTTTGTTAGTAACATAAATAAATAAATACAAAAAAATGGGAGCTGCATCTAGTGACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587456" ref_strand="+" ref_description="SGN-U587456 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147820684|emb|CAN69823.1| (e_value=1e-50) hypothetical; (*ATH) AT1G79230.1 (e_value=3e-45)  Symbol: None | mercaptopyruvate sulfurtransferase (MST1) (RDH1), identical to mercaptopyruvate sulfurtransferase GI:6009981 and thiosulfate sulfurtransferase GI:5834508 from (Arabidopsis thaliana) | chr1:29805586-29808832 FORWARD | Aliases: YUP8H12R... ; (*SWP) sp|P58388|THTM_ECO57 (e_value=1e-13) 3-mercaptopyruvate sulfurtransferase OS=Escherichia coli O157:H7 GN=sseA; ">
      <seq>ggggaattgtaagaataaaaagggaattgtaaaatattaattcttttttttcactcctcaatttcttctctctgctatcaccaggaaaccatttcgctcgctagcagctccaacttactaatctacaaagttaagggttattttactcgttgtatggcttcctcaatggttggggcacaaccatcattctcaacactagcaatatcaaccaacgaacctgttgtttcagttgactggctccatgcaaacatcagagaccccgacttaaaggtgttagatgcatcttggtacatgccagatgagcagagaaatccactccaggagtatcaggtcgcttgcattcctggagcactannctttgatatagacggaataactgatcggactacaaatttgccacatatgttgccnnctgaanaancatttgcagctgctgtgtctgctcttggnatcaagancaaagatggngttgntatatacnatggcaagggcattttncagtgctgnncgngtttggtggangtttcgagcttttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="+" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="24789" stop="27386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25085" g_stop="25166" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25167" i_stop="25799" i_length="633">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25800" g_stop="25987" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="270" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25988" i_stop="26307" i_length="320">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26308" g_stop="26367" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="330" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26368" i_stop="26552" i_length="185">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.786" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26553" g_stop="26615" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="393" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26616" i_stop="26860" i_length="245">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26861" g_stop="26985" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="519" r_length="126" r_score="0.888"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26986" i_stop="27066" i_length="81">
            <donor d_prob="0.959" d_score="0.86"/>
            <acceptor a_prob="0.953" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27067" g_stop="27086" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="539" r_length="20" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="+" ref_id="SGN-U587456" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25085" e_stop="25166"/>
          <exon e_start="25800" e_stop="25987"/>
          <exon e_start="26308" e_stop="26367"/>
          <exon e_start="26553" e_stop="26615"/>
          <exon e_start="26861" e_stop="26985"/>
          <exon e_start="27067" e_stop="27086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAATTGTAAGAATAAAAAGGGAATTGTAAAATATTAATTCTTTTTTTTCACTCCTCAATTTCTTCTCTCTGCTATCACCGTAAGTTCCCTATATCTCCTCCTTGATTTCCTTTCTCTGATTTCTATTCATTTTGATTTTGATTTGCATTTTTCTTCAATTATTTGAAACCAGATTTTACTGAAGTTGCAGATTTTGATTTTGTTGGATATTTTTGTTTCTCAATGCACAGTTCATTTGTTCTTGCTATCTCTCTTCTTACTATAAAAAATTTGTTACTTGTATACTTTCATGGCTTATCAAAGATTTAACTAACAATTTGATTGTTTGATTTTGACTTTGACACTGAGTTTAAGAAAACAAAGAGATTTTTGAATGTTGTGGGATCTTGTGGTTATGTGGGAAGTTCCAAAAAGGAAAATTGAAACTACACAAACAAATACGAATGGAGGGGTACATGTATTTGTTAATTTTTCATCTTTTGCAAGTTACAGTTTCATTAGTGGATAAAGCTTAAAATTTAAGATGTGGGTTTATTCCTCTTACTGGAAAGATTAAGATTAAGAGTTATTGGAATTTTAATGCATGGCAAAATTGTGATTTCTATGTGAAAACTCTTTATTAGCAGCATCAATTTCTGGGCTTGTATATTCTTGAATTTCATTTTCCTTGGGAAGTTGGCAAGAATGTTCATCATTTGCTTAATCCTTGCAGAGGAAACCATTTCGCTCGCTAGCAGCTCCAACTTACTAATCTACAAAGTTAAGGGTTATTTTACTCGTTGTATGGCTTCCTCAATGGTTGGGGCACAACCATCATTCTCAACACTAGCAATATCAACCAACGAACCTGTTGTTTCAGTTGACTGGCTCCATGCAAACATCAGAGACCCCGACTTAAAGGTTTCTGATCTTTTCAGTCTTAGCAGTCAAAATACTTGATAAAGAATAAGATGGTGATAGTATGGCCGTTATTACAACTGTCTAAACTACATTTGCTGCTCTAAATATTAAATCTGAAGTTGCATTTTTTGTTCACTCAACTCATGCCTATAAAAAGGACAATTCTTTTCCTTTTCTGTTCATTTCTATTTAGCAACACATTTGCACATGTTTTCTTTCTCTTCCAATTTTTCGGGTGGGGTGTGTGGTGCTGGTTGTATTATGTGAGGCATCTGTCAAATAGTACTGAGATTTTGTTTCTTTTTCCTATTCTTCTAAAGGTGTTAGATGCATCTTGGTACATGCCAGATGAGCAGAGAAATCCACTCCAGGAGTATCAGGTGCTGACTCCTGAGAAATTCTTTTCTGAATGACACTGCTTTATCTTGAATCACTGATTGCTTTCTAGAAAATATGTTCACAGATAAGCAATTTTCTTTTTCTCAGTCGCATTTATGGTAATTTTGTTCAACAGTCACTTTCATTCTGTTTTTCTGGTAGAATTTTCTAACTTCAACTAGAGCAGGTCGCTTGCATTCCTGGAGCACTATTCTTTGATATAGACGGAATAACTGATCGGACTACAAATGTGAGATATCTTCCCTGCTAAATTATTTCTCCTCTAGAAAGAGTGATTTTGCTCGACATAATCTTTGCAAATTACTAAACCTTCTCTGGTTTCAGTTTCTCTTCTTTGCAAATTATTTCTGTTTCATTTTTGTCCCATATATGTTTCTCCCTGTACTGTAATAGATGCTTCAGCTAGCCATCCTGCATGCTTTTGAGATAGATTTCATCATCTTTTATGATATAAAAGCTTTATTGATTTATCAGTTGCCACATATGTTGCCGTCTGAAGAAGCATTTGCAGCTGCTGTGTCTGCTCTTGGTATCAAGAACAAAGATGGGGTTGTTATATACGATGGCAAGGGCATTTT-CAGTGCTGCCCGTGTTTGGTGGTGAGTTATTCAATTGATGATAAAAGGCGGTTAAGTTCATATTATGCAAAAGTGTCTAATCAATGGAATATGGGTAATCAGGATGTTTCGAGCTTTTGGAC</genome_strand>
        <mrna_strand>GGGGAATTGTAAGAATAAAAAGGGAATTGTAAAATATTAATTCTTTTTTTTCACTCCTCAATTTCTTCTCTCTGCTATCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAACCATTTCGCTCGCTAGCAGCTCCAACTTACTAATCTACAAAGTTAAGGGTTATTTTACTCGTTGTATGGCTTCCTCAATGGTTGGGGCACAACCATCATTCTCAACACTAGCAATATCAACCAACGAACCTGTTGTTTCAGTTGACTGGCTCCATGCAAACATCAGAGACCCCGACTTAAAG................................................................................................................................................................................................................................................................................................................................GTGTTAGATGCATCTTGGTACATGCCAGATGAGCAGAGAAATCCACTCCAGGAGTATCAG.........................................................................................................................................................................................GTCGCTTGCATTCCTGGAGCACTANNCTTTGATATAGACGGAATAACTGATCGGACTACAAAT.....................................................................................................................................................................................................................................................TTGCCACATATGTTGCCNNCTGAANAANCATTTGCAGCTGCTGTGTCTGCTCTTGGNATCAAGANCAAAGATGGNGTTGNTATATACNATGGCAAGGGCATTTTNCAGTGCTGNNCGNGTTTGGTG.................................................................................GANGTTTCGAGCTTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583533" ref_strand="+" ref_description="SGN-U583533 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|147820684|emb|CAN69823.1| (e_value=3e-153) hypothetical; (*ATH) AT1G79230.1 (e_value=3e-153)  Symbol: None | mercaptopyruvate sulfurtransferase (MST1) (RDH1), identical to mercaptopyruvate sulfurtransferase GI:6009981 and thiosulfate sulfurtransferase GI:5834508 from (Arabidopsis thaliana) | chr1:29805586-29808832 FORWARD | Aliases: YUP8H12R... ; (*SWP) sp|P97532|THTM_RAT (e_value=4e-59) 3-mercaptopyruvate sulfurtransferase OS=Rattus norvegicus GN=Mpst; ">
      <seq>gttcattttgattttgatttgcatttttcttcaattatttgaaaccagattttactgaagttgcagattttgattttgttggatatttttgtttctcaatgcacagttcatttgttcttgctatctctcttcttactataaaaaatttgttacttgtatactttcatggcttatcaaagatttaactaacaatttgattgtttgattttgactttgacactgagtttaagaaaacaaagagatttttgaatgttgtgggatcttgtggttatgtgggaagttccaaaaaggaaaattgaaactacatttcttctctctgctatcaccaggaaaccatttcgctcgctagcagctccaacttactaatctacaaagttaagggttattttactcgttgtatggcttcctcaatggttggggcacaaccatcattctcaacactagcaatatcaaccaacgaacctgttgtttcagttgactggctccatgcaaacatcagagaccccgacttaaaggtgttagatgcatcttggtacatgccagatgagcagagaaatccactccaggagtatcaggtcgcttgcattcctggagcactattctttgatatagacggaataactgatcggactacaaatttgccacatatgttgccgtctgaagaagcatttgcagctgctgtgtctgctcttggtatcaagaacaaagatggggttgttatatacgatggcaagggcattttcagtgctgcccgtgtttggtggatgtttcgagcttttggacatgacaaagtttgggttttggatggtggcttgccaagatggcgtgcttcaggttatgatgtcgagtcacctggtgatgccattctgaaagctagtgttgccactgaggcaattgagaaagtataccaaggacagatggttggaccttctaccttccagaccaagtttcagcctcatcttgtctggagtcttgatcaggttaaaaggaacattcaagaccagacatatcagcatatagatgctcgatccaaagctaggtttgatggtgttgcaccagagcctcgaaaaggaattaacagtggacatgtacccgggagcaagtgtattccttttccacagatgttggatggctcacagacactcttatcccgtgaagagctcgagaaaaaatttggtcaagaaggtatctctttggacaagcctatagttgcctcttgtggcacaggtgtaactgcttgcgtacttgtcttgggcctccatcgactggggaagactgacattccagtctatgatggttcatggacagaatgggcaacacagccagatacacctctctgcacatctgaaagatgaagacgtttgtatggcctgcctagtttttatgggtgagcaatgatgattgtgaatctagatctggttccttttcttaatggttagtgcaacaacttacattgtattgttgaatgataacaacggaaaaatttcttctctgttgtacaaaatgccttaattttaccttcattatatttttggttagtgcaacaacttccattaactatactttgtactaaaaaacactcttatgcttggataagtgaacttagaaaggcccctgaaatcaaatgtattcatgcgttgtccagttggagtttatatttgatgtgtcattgaacataaaactacgctatgcgtgattataaatatttagcgaaatagatatttgtatttatacatataatcatttttggaacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="+" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="24913" stop="38111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25212" g_stop="25538" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25539" i_stop="25799" i_length="261">
            <donor d_prob="0.849" d_score="0.62"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25800" g_stop="25987" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="515" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25988" i_stop="26307" i_length="320">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26308" g_stop="26367" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="575" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26368" i_stop="26552" i_length="185">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.786" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26553" g_stop="26615" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="638" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26616" i_stop="26860" i_length="245">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26861" g_stop="26985" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="763" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26986" i_stop="27066" i_length="81">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27067" g_stop="27223" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="920" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27224" i_stop="28062" i_length="839">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="28063" g_stop="28122" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="921" r_stop="980" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28123" i_stop="28803" i_length="681">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28804" g_stop="28862" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="981" r_stop="1039" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="28863" i_stop="33641" i_length="4779">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="33642" g_stop="33723" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1040" r_stop="1121" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="33724" i_stop="36538" i_length="2815">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="36539" g_stop="36602" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1122" r_stop="1185" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="36603" i_stop="37107" i_length="505">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="37108" g_stop="37175" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1186" r_stop="1253" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="37176" i_stop="37307" i_length="132">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="37308" g_stop="37811" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1254" r_stop="1757" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="+" ref_id="SGN-U583533" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25212" e_stop="25538"/>
          <exon e_start="25800" e_stop="25987"/>
          <exon e_start="26308" e_stop="26367"/>
          <exon e_start="26553" e_stop="26615"/>
          <exon e_start="26861" e_stop="26985"/>
          <exon e_start="27067" e_stop="27223"/>
          <exon e_start="28063" e_stop="28122"/>
          <exon e_start="28804" e_stop="28862"/>
          <exon e_start="33642" e_stop="33723"/>
          <exon e_start="36539" e_stop="36602"/>
          <exon e_start="37108" e_stop="37175"/>
          <exon e_start="37308" e_stop="37811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTGATTTTGATTTGCATTTTTCTTCAATTATTTGAAACCAGATTTTACTGAAGTTGCAGATTTTGATTTTGTTGGATATTTTTGTTTCTCAATGCACAGTTCATTTGTTCTTGCTATCTCTCTTCTTACTATAAAAAATTTGTTACTTGTATACTTTCATGGCTTATCAAAGATTTAACTAACAATTTGATTGTTTGATTTTGACTTTGACACTGAGTTTAAGAAAACAAAGAGATTTTTGAATGTTGTGGGATCTTGTGGTTATGTGGGAAGTTCCAAAAAGGAAAATTGAAACTACACAAACAAATACGAATGGAGGGGTACATGTATTTGTTAATTTTTCATCTTTTGCAAGTTACAGTTTCATTAGTGGATAAAGCTTAAAATTTAAGATGTGGGTTTATTCCTCTTACTGGAAAGATTAAGATTAAGAGTTATTGGAATTTTAATGCATGGCAAAATTGTGATTTCTATGTGAAAACTCTTTATTAGCAGCATCAATTTCTGGGCTTGTATATTCTTGAATTTCATTTTCCTTGGGAAGTTGGCAAGAATGTTCATCATTTGCTTAATCCTTGCAGAGGAAACCATTTCGCTCGCTAGCAGCTCCAACTTACTAATCTACAAAGTTAAGGGTTATTTTACTCGTTGTATGGCTTCCTCAATGGTTGGGGCACAACCATCATTCTCAACACTAGCAATATCAACCAACGAACCTGTTGTTTCAGTTGACTGGCTCCATGCAAACATCAGAGACCCCGACTTAAAGGTTTCTGATCTTTTCAGTCTTAGCAGTCAAAATACTTGATAAAGAATAAGATGGTGATAGTATGGCCGTTATTACAACTGTCTAAACTACATTTGCTGCTCTAAATATTAAATCTGAAGTTGCATTTTTTGTTCACTCAACTCATGCCTATAAAAAGGACAATTCTTTTCCTTTTCTGTTCATTTCTATTTAGCAACACATTTGCACATGTTTTCTTTCTCTTCCAATTTTTCGGGTGGGGTGTGTGGTGCTGGTTGTATTATGTGAGGCATCTGTCAAATAGTACTGAGATTTTGTTTCTTTTTCCTATTCTTCTAAAGGTGTTAGATGCATCTTGGTACATGCCAGATGAGCAGAGAAATCCACTCCAGGAGTATCAGGTGCTGACTCCTGAGAAATTCTTTTCTGAATGACACTGCTTTATCTTGAATCACTGATTGCTTTCTAGAAAATATGTTCACAGATAAGCAATTTTCTTTTTCTCAGTCGCATTTATGGTAATTTTGTTCAACAGTCACTTTCATTCTGTTTTTCTGGTAGAATTTTCTAACTTCAACTAGAGCAGGTCGCTTGCATTCCTGGAGCACTATTCTTTGATATAGACGGAATAACTGATCGGACTACAAATGTGAGATATCTTCCCTGCTAAATTATTTCTCCTCTAGAAAGAGTGATTTTGCTCGACATAATCTTTGCAAATTACTAAACCTTCTCTGGTTTCAGTTTCTCTTCTTTGCAAATTATTTCTGTTTCATTTTTGTCCCATATATGTTTCTCCCTGTACTGTAATAGATGCTTCAGCTAGCCATCCTGCATGCTTTTGAGATAGATTTCATCATCTTTTATGATATAAAAGCTTTATTGATTTATCAGTTGCCACATATGTTGCCGTCTGAAGAAGCATTTGCAGCTGCTGTGTCTGCTCTTGGTATCAAGAACAAAGATGGGGTTGTTATATACGATGGCAAGGGCATTTTCAGTGCTGCCCGTGTTTGGTGGTGAGTTATTCAATTGATGATAAAAGGCGGTTAAGTTCATATTATGCAAAAGTGTCTAATCAATGGAATATGGGTAATCAGGATGTTTCGAGCTTTTGGACATGACAAAGTTTGGGTTTTGGATGGTGGCTTGCCAAGATGGCGTGCTTCAGGTTATGATGTCGAGTCACCTGGTGATGCCATTCTGAAAGCTAGTGTTGCCACTGAGGCAATTGAGAAAGTATACCAAGGACAGATGGTAAGATGAACATTTCTCAATTTCCTTTATCTCACTAAGCTTGTAGCCTTGTACATCTTTAAATAAAACAAGATTCCACAAGAATAGCACCTTTTGAAGCAATAGGGTGAGGTTCTCTAAGTTTTATTGTCTTCTCGGGACTTTTGCTGCATCGTTCCAAATAATGCTTAAGTAATGACTCTGTTGGTGCTTCTTGAATATCCGGAGGGCTCCACAGACTCATCTTGTTCATGTTATAACCGTTCATTATGTAAGGATGAACAACTTTTGTTTTTACCTCAAGTCAGACTATCTTAGATTCTTTTTCCCCTTAACCGATTTAAGAAATAATTCTCTCATTATGTTACTTAAATGAAAATCTATCCTTTTTATAAGTAAATTTACTGAAAAGTGAAAACAGTACCCAGGTGATGCAAAAATTACAGAGATGGACTTAAGAACTCCTAGTATATGCTTGAAGAGTCAATCAAGTCCATCATATTTGCTTGCTCCTTAATTGTATCCCCTCTGTTCCAAAAATACAAGTATTAAAGATAACTATACTTTACAAAAGTTTCAAGGAACTGTAGTTGTCTTCCATAGGATGCAGTGAATGATTTGATGTTTGACAAGTTCCCAATTCCTTAATTCTTTTTTTATTGGGGATGTATATGATGAAAATACCTTTTCAATCACACTTTGTCCACTTGGAATTTATGAATATAAAGTTGAAACATTAGTTTTTCTTGCTGTGTAGAACTTCTAGGTACATTTTCTTTCTCCCTCTCTTCGTATGTTCTGACGTTGTGCATTTAATGTTATATTGTTCAAATGTTTCTCTTAGAACCTTTAATGTGCAGGTTGGACCTTCTACCTTCCAGACCAAGTTTCAGCCTCATCTTGTCTGGAGTCTTGATCAGGTTGGTTTCCTTGATTGCTTTCTGCCGTACAACACTTGGTGGTGGTTGCATCTAGCCATGTATCATGAAGCTGATGGTAATGGCAAGGACTTTTTTTGGATTATTGACATTCAGGCGGTATTCAAAATCCAACTATTTAAAATTAGATTTTTTTTAAGAGAAAGGTAAGAGTAGTATTATGAAGTCTCCAGCACAAAGACTATGCTAGGAACAATATCTACTGTTCAAAAAGCAAAACAAAAGGTAAAACATGAACGACACTACAAGTGGACTGCAATTTAGTGGGTATTAGATTGTAAGTTTGTTGGTTGATATTTGTTACCCTTAGTGCAACTTTGTTCTGCAAAAATCTACCTCCGTTTCCCTGATTGACTGGTACAACTCTATGAAGTTTGTGAAGAAAATCTAGGAGGACTAGAACTATGACAATTGGAGGATGTTTTCTACAGAATATTTTGATCTGTTCGTGGATTCTGGTAATAGCTGCTCTTTGTGAAGGTTAATAGTTTGATGATTGTATGATAGTCCAATACTGGAAAAAAATGTGAACACAATCTTGTCACTTGACATAGGTCAGAAAGATTGGATCTTTCAATATATTCTCCATAAATGTATGTATTCTTATCAGAATACTTCTAGCTTGGCTATAGAAATGGAGATATGATTTCTGTATATTTTCAGGTTAAAAGGAACATTCAAGACCAGACATATCAGCATATAGATGCTCGATCCAAAGCTAGGTACTTCATCATGTCTGCAAACCCATATTTTAAAATGTGATTGACTAATATGCTAAGCTATTTGTTCAACAACACTCACATGATGAGGAGAGTAGATTTTATTTGTCAATTATCTTTTGAAGCAGTTATAACCCTTGTGAATTTACTTTTTAGATTTTACTTCTCCCTCCTAATTTATGCGACACATTAAGTCAGAAAATGTTTGGCACATGTTATGAATAATAGTGATGTTCAATTTGACCATTCTATACTCTTAAGAGTTCAACTTCAAACTCAAATAATGAGGTTATGCTTTCCTTTGCAACAGTTAGCTCTATAGCAAGTCAAATTGTCTTTGTGCCTTGTTAAATATGTCGTTTGATTAGAGAGTAATATCTTTTGGCATGTCTTGTCATCTATAGGGCCTTGTTGGATGCTTTCCTTACAAACAATTAGTTCAATATGCTAGTCAAAGAGAGGCTGCTGTCTTGTTGTATGGTTAGAAAGGTCGGAGTAATAAATTTTGGCACATCTTGGGATTTAGATAGTTAGATTGCCGTTATATGAATATGTATTTCTTTCTTATGCTACATTATCTTTAGGACATGTAGACAGAAACTTCTTCTCCTAAAGTGAAATGTTGGCATAGCCAACTTTAACATTTTGTAATGGCTGCAATTGATGTGCCTTAGTGAGCAGGAAAACTTAGATAAACATTATTAGTGGTTACCATCGAGAAAGGATGGAATCTGAAAATGTTGCAATTATATCTTTCCTGACAACTCTCAAGTTTACCACAGTCATGAAGTCATGAGTTATTAGGGACCACTCATTACATAATGTGTGAAAGGCTAATTGGGGTGCTTATATATTTTTTCTTTATACAACATAACGTGTGATCTGGAGAGGGTAGAGTGCACACAGACTTTATCCCTGCCTTGAGAAGGTAGATATGTTGTTTCCGATAGACCCTCGACTCATGTAAAACATTTCAAAGCAGTTTAAAAAGGGAAAACAATAGTAAAGTAGACATATCAAATAGGGAAAGCATTACTTAACATTCAAAAAAAGGAAAAGTAGCAATAGCAAAATAATGTGACAAACAAGGTACTAGAAATAACAGGCAGCAGTAGAAGTCACAGGGCTAGGAACTACGAGAACAGATACTAATACTACTAGAATGAGAGGAGAACAAGTACACTTCTCTACACTACCACCAAGCCTTTCCTGCAGGAATGCGAGACAATACTTAATTACCTACTAATATCTACCCTAATCCATGATTTCCATAATTTCTATTTAAAGTCATTCCTCGGTGAGCTAAAGATGCATCATGTTATGTCCAATAACCTCTCTCTAATACTTTTTTGGTCTACTTCTTCTTGAACCCAACATTGCCAACCTTTCACACCTCCTAAATAGAGTATTTGTGCATTTCCTCTTCACATGTCTTCATCATTTTAGCCTCGTTTCTCTTATCTTATCCACACGGGCCACTCCCATCTTGTTTTAGATGTTCTCATTCCTAATCTTATCTCTCTAAATATGCCCACACATCAAGCACAACATCTTCATTTTCGCACCTCACATCTTCTGGACACGTGAGTTCTTAACTGACCAACAATCTGCCCCATAAAACAGTAGGCCTAACTACCGCTCGATAGAACTTGCCTTTAAGTTTTGGTGGTGTATTTTTATCACACAAGACTCTAGAAGCGAGCCTCTATTTTGTCATTCAACACCAATACGAAGTGTGAGATCATCGTTGATGTCTCATTCTTTTGGATTAAACAACAATAACAACACACCCATTGTAATCCCATAAAGTAGGGTCAGGTAGAGTGTACGAAAACTTTACCCCTACCTTGGAGGTAGAGAATCTATTTCCAATAGATCCTCAGCTCAAGAAAAAATGGTTCAAAGTAGTATGAAATAGTAAATGACAGAAGTGAGAAACTATGACAAATCATTCTAAACAGTGGCTACAATTGAATAATACAACAATTGTTGAAGAGTCCCACATCAGATTAAAAAAGGACATGTGGTCTCTTTATAGGCTTGAGCAATCCTTCCTTTGAGCTAGCTTTTGGGGTTTGAGTTAAGCCCAAAACTTAATTTAACATGGTATCAAATCAGAATCCATCTCAATTAATGTTTACTGATGATAAGCCTATAAATTAGATTGTCCACACACCAGATGTCCAATCCTAGGCGAAGAGTCCCAAGAGCTATTCTTCATTTTCTTCCAGATCTCTAAATGTATTACCAAAACTAGGAGCTTATGTTGGTTCATAAGCGTCTCACCCGGGATGACTTTGTAGTCTTTACAAAGACCTTTATCAACTTTCTTAGGGGGAAAAATAGTCTATTTGTCTTGCCCAATGTACTGTGGAACTTACCAAGTTCTCCTCCTTATTTGAGAAACTCAAACTGGCTACCCCAACCTAAAGGCTCCTGCATAATCTAGAAGTGAGCCTTTTCTTTTTCCTGTTCCCGGAACCGAAACCTCTATGCACTTGTCATAGCCCCGTGGAGTTGACCCGATTTGTCCATTAAAATCTCCTCATACGGATAACTTCTCAGTGAACGATATATCTTCCATTACCTTGTCAAAATCAGTTCTTGTCCGTTTTGCCCAAGCCCGCTTGTGGTGTGCATGGACTAACGATGTTCAAAGTGGACCCTCCAATGACTAATTTAATCGTTATCATCTTGTCGTTGATTCTCCAAACCTCTACCACTTGCTCCCTTATTTCTCTATCTATTAAGAATCCTACTCCATTTGTATTACTCAAGACTACTAAGTACCAAAATTTGTACTTGTCCACATCTAACGCCTTAGTACCTACCCATATGGTCTCCTAGGCACTAGCTACACATCTTCCTCTTTTTGAGAATCTTCATTAGTTTATGGACTTCCCCATTAAAGTCCCTATGTTCCAAGACCCCAATCTCAGCCTAGAAGATCCCATAACCCACTTACCATCCCTGACCCTAGCCTCTGTCCCCGACTGAGAAAATAACTAATCAAGGGCTTACATCAAAATGAGCAGGAATCAATACTCAAGAGTAAAGACAGAGTAAGAATCCAAGGACCAAAGTCAATAAGGCAGGAGCTGAAGCACAATTGAGCAAGAATTTAAAGACGAGTACAACTAATAAGACAAGAATGGTAGCACTAACGGCTGAGAGAATTGTACACAAGAATTACTAGGGCAGGATCAAAGCACAAGCAAGCAAGGATCTAAAGGCAAGAATTTCTATAAGACAAGGATGATTTCACCCGAATACAAACCTTTGATATTTGGAACTTCTTCTCTTGGGGATGACCTGCTTATCAAGCCTCACTTCTACGCCAACCTCTTGTGTCTCATCACTGAACTTGCAGTATAAGCACTCCTTTGGGGTCCCACTCAACCTGGACCCTTTAGACTCTAAGATTCGTGTCCAAACTTCCAGCCTACTGTTAACTCCATTGCGTGTCTGGTCAATCAGTACTATGTCATTTGCCAATAACATTCACAATGGCACCTTTCCTTGGATATGACGTGTCAACTCATCCAACACCAACAACACAAATAGAAACAGGCTTAGAGCGGATCTCTGGTGCAACCCCATTATGACTTAGAAGTGTTCTAAGTCTTCTTCCAGTGTTCTTACCGGCTTGGCTATTGTACATGTTCTGAATCACTCTACTGTATGCCACCGATACACTTCTAACCTCCAAACACCTCCATAGAACCTCTCTTGGGACTTCATCATAAGTCTTTTCTAGGTCAATGAACACCACAGGTATGTCCTTATCCAAATGAGCCCATTAACTCTACAAAATGCAAAACCTCAACTTTTTCATGTAAGAAACTAAGATGCCTATGATGCCAAGTATAATCAGAATTTTTTACTATACTCTTCCAGATGTCACAGCTTGCGGACCCAGTTAAGAGCCATTTGATTGCTTGATATGCATTGACATGTATGTGCATAAGATTTAGAAAGAAAAACCACTTCTCTTTATATTTTAAGAATATTACTAGTTTCGTTCTTTGTGTGATGTCAAGGAGCAATTCTCACATTAACTTCTTTGTAGGATTTCTTCCCTTTGTGGTGTCAGTTCCTTGTTTACGAATAAATAAGGATTGATATATTCTGTTCATAGGTACTTGTATGATGATGGTCTAGGAAAAAATCATCTGTTCTAGAATAGTGTTTACAGGGTAGGGCATATTTACATTTTCAAGTTGTTTTGGTGAAGTTACGCTCTTAGTCATTATTATTTCAAGAACTGCAATTGTTTTGTATAGTCATTCCCGTTACGAGTGGCTTCTGTCCAAGAACGAGTAGTTGTGCATATCTTCTTTTCCCAATAAATTACAATACAAACACTGCTCTCTGCAGGTTTTGAGTTTAAAAAGCTATGTAAATGTGGTACCTATACTCTACATACTTAAGATATGATGTTGAGGAGAAATAGTTTTTTAATTTGGATATTTAAAGATGGGCGTAATCTTCCTCTATGAGCGAGACGCCATCCAAATCTTCCACTCCTTGGGCGAGGCCTTCTGTTCTATGAACACCCCATCACTGAATGATTCACTTTCAAATTCTCGCTGTAAATACCCGGTCGTAAAATTAGGAAAAAACTTTGACTAAGAAGAGGTAATAGAGGGAATAAATTTATCAACTGCAGCAAACTGAAGCAACTGTAATTGGTTAATGTGTAAATTTTCTAGAGTTCAAATGCAAGCTTAATTTTTTTCATAGAGTTAAGTTATCTGGATTTTTGTTTTGCAACTGTTTTAGGTTTGATGGTGTTGCACCAGAGCCTCGAAAAGGAATTAACAGTGGACATGTACCCGGGAGCAAGTGTATTCCTTTTCCACAGGTGAGGATCTGTGCATTGAAGAAAAAAAACGATTTTTCAATATTCTATGGCAGTTTTCCTGTTTCATCTCCTGTATAAAAACATTTCCTGCTTTCAAATGAAGATATGGTGAAGTATTTCTGTTTGAATAGGTTAAACTATTTGTCTCATATTTCCACTGTGCTTGATGCTCCTTGACCATGGATAATTTACTTCCAGTCATTGATATCATCTGGACTACCGAGTGCATGACAATATAAGTTTCTAACAGTTGACAATGATCAAAACCATGAGCTTGTACTAAGTTTGATGCATTTTGCTTAAAACCTTGTAACAGAATGTTAAGGCCCAAATTATGAAATTTCAATACTATGCCTCTCAGAGATGCAAGTCACAAAAATGAATGTGAAAATGCTCTCAGGCACAGTTATTGAGGTCAGAAAAGACTTGTTCTTTTCCAGCCGTTTGTAAAGTTTCTGGCATCTTTACAGTTATTCGTTAATCACATTCATCAGTTATTACTACAAAAATTGGTATAGATTCAACATGTGTGGGGAAGGTTTGGTTTGAATGGGTGGAATAAAACAGAAGGTTGATGTGCGGAGCTACTTTTAGTAGAAAAACCATGGAGTTATTGTGCTTTGTTTTATGGGAGGTATCAAGACATTCTGATATGCATGGCCGGAGATGGAAACTAAACGAACATCATTCAAGTTACTTTGTATACACTATTAAACGAATCTGGTTTAAGATTGATCCAACAGCCTATGCCAGTTAAAGTGATGGGGTAACAAATATTTCAATTAGGCTCAGTTTTATTTACCGAGTCCCAGCTCTTTAAACCAAACCATTTTACTATGGTCGGTTTATAATAAAATGGGACCAATCTTTGTGGAGATTGAAGCAAATAAATCAGTCCTTGGTAACTCCAAATGCAGCTCTGGAAAGAGAAAAACAGCAGGAGTTTTGAAAATTGGCATAATAGCTTACAGAAGATCAAGATGGATGCTTAGCTCTTTTCTATTTTTGGTGTAAACAAGATATTAACTAGGACAGAAAATATCTTTGATGTGCTAGATTGTTCATAGGTAGCAGTTTAGACTAAGACTATTTTATTCGAGAAAATGGTTTAGAACCCCCCTAATTTATATCTGAAATCTCAACTACACACTTATTCATTACGAAAGTCCCATTACACTATTTTAAAGTAGAATTATTTGCTCCCTGGATGATAATGTGGCAAGGTAAGTGTAGGACACTCTCTCAAAGAGAGTGAGAGGTAAAAATACTAATTAAAACTTTAGATTTTAAAAATATTTCTTAAATTTATATTATAATTTTTTTATTCTTCAAAAATCTTTTGTTTCTTTTTTTAAAAAAATTATTTTTTATGGTCTTTCTTCTTCTCTTTACCAAAGCTACATCGGCGGCGGTTCTGCTCCACCACCAAGTCGGCGCCCTCACCGACTCTAATCATTAAGTTAACTCTTTTTTTTCAAATCACAAATTTCTCACAGTTAGTGTGAAAAATTGACAAGAACTGAAAATCGAAATCGAAAGTCAAGAGGATCGAACTTTAAAGTTATTAATGGAGAAAAATTCATCAAGTTACAGATCCATCGATGGAGAAGAACTCATCAACAAAATCATTAGGTAACAAACCCATTTATGAAAAAGACCCAATAATCGAAATGAGTTGCTGAACATTGTTAAATTCTAGCTTCAATACAAATCATCAAAAATTTTCTTGTGCTCATAACTCCAATGAGGCTCGAAGAAGATGGTGGCAGTCATATAAAGTATCTCCAAATCTGAAAAATTTGTTGTCGAGATTAAAGAAAAAGATGAATGGAAAAGGAAAGTGAATCAAAGAAGAAGAGGAATGGAAAAAGGAAAGTGAAAGAGAAAGATGAAAATATAGATGAAAAAATATTGCAGCATAAAGTTTTTTTGTTTTTTTTTAAAAAATGGTTAGATTACGTGGCTGAGCGCATGAGATTCATTATTTCATATAAATCTGGTTGTGTTTTTAAGGGGTATATATTTTACTTTTAAAATGTTCTGGGGGGTAATAGAACTCCCGTAATGAATAAGTGTGTAGTTGGAATATCGGGTATAGTAGATTAGGGGGGTTTTAGACCATTTTCTCATTTTATTCTGTTATTTGTAAAACTTTTGAAGGGGAACTACACTGTTGTTATAGTATACCTGTGGATATATAGACTAAAGTTATCAGTTTAAAAAAAAAAAAGATTCCTTGTAAGAGAAGCAAGGATGGTAGTTATTTTTGGGTCCTTAGATGTAACACTCATATATTTGGTTTCCAGAACAATCTTTGATGATTTATATACTGATCTTGTTATATTCTCAAAAAAGAAAAAAAATCAACTCTTCTCTGGTCTTCCAAGAATCATTTTGGGCATATTGGCTCTTGGATCCTACACTGATGCCTTCGTCTGCCTGCAAAGATTCTTGAAAACTGAGGCATTCTCATCTCTTTGTCCCCTTATGCTTGACTTTGCGCCTAAGCCCTGGAAAACCTAGTGTGTGTAGTACCTGTTCAGTTTATTAGCTTCTATCTACTCTTTGATGATTTATGTAGAGACTATCTGGTTGAAGCTCTGAAATAACCTTGGGTAGTCATCATCATCAGTATGAGAGTGTGAAACAATAAATGAGCTTTACATGTTTTGCCTGTATTTCCTTGTTTCAAAGCTTAATCCCTACTGAGTAATTCCTAGATCAAGTTCTGTAGCTGTGATAGATTCAAATCTATTTTTTTTTTTTAAAAAAAATCAAATATTCAAATCTATATGTTTGTGGTGATTCTTATCAGATGTTGGATGGCTCACAGACACTCTTATCCCGTGAAGAGCTCGAGAAAAAATTTGGTCAAGAAGGTTAGAACTAGTCTCATTTTCTGAGCTAGAGTTTGGGCATGCTGCATTTCTGTGGTTTTGCTTTCCTGCTACCCCTAGCTTTGCTGAATGTTAGACTTCATAAAAACAGTGAGCCATGTGTTAAAAAGGTATGTTGTATGTGGCACGTTTAGGCCTGAAGCTACCATGGAGCTCAGGTTGGGAACTTAAGTGCAAGATCGTCATTGCAAAACATCCATGTCATTGCCTATAGGCAATTAGAGACCCCCTTTAAAAGGACAACACTAGGCAATAAATATAGTCAGCAAAGTGGAGGCTTAATTATTAACAAAATGTTTTCTGTAGTGATTTGGGTGCTCTTTAATCCCCAAATCACTACAGAAAACATTTTGTTAATAATTAAATCTCCACTTTGCTGACAATATTTATTGCTTGAATAATTCTTGTATAACCATGGAATGTATGTTATTTGAAAATGTCCTTGCTCTTTAGGTAACTAATCTAACAGTACATGGTTCTTTCGCAGGTATCTCTTTGGACAAGCCTATAGTTGCCTCTTGTGGCACAGGTGTAACTGCTTGCGTACTTGTCTTGGTCAGTTGAATCCTCTCTCTCTCTCATACAGCTTTCGCTTGTACTGTTGTACATTAATCTATGCCCAGTATTCATATGGCTATTCCATCGTCTCAAAAGAGGGATGAATTCAAAGTTCATTTATCTTTTTAGGGCCTCCATCGACTGGGGAAGACTGACATTCCAGTCTATGATGGTTCATGGACAGAATGGGCAACACAGCCAGATACACCTCTCTGCACATCTGAAAGATGAAGACGTTTGTATGGCCTGCCTAGTTTTTATGGGTGAGCAATGATGATTGTGAATCTAGATCTGGTTCCTTTTCTTAATGGTTAGTGCAACAACTTACATTGTATTGTTGAATGATAACAACGGAAAAATTTCTTCTCTGTTGTACAAAATGCCTTAATTTTACCTTCATTATATTTTTGGTTAGTGCAACAACTTCCATTAACTATACTTTGTACTAAAAAACACTCTTATGCTTGGATAAGTGAACTTAGAAAGGCCCCTGAAATCAAATGTATTCATGCGTTGTCCAGTTGGAGTTTATATTTGATGTGTCATTGAACATAAAACTACGCTATGCGTGATTATAAATATTTAGCGAAATAGATATTTGTATTTATACATATAATCATTTTTGGAACTTAT</genome_strand>
        <mrna_strand>GTTCATTTTGATTTTGATTTGCATTTTTCTTCAATTATTTGAAACCAGATTTTACTGAAGTTGCAGATTTTGATTTTGTTGGATATTTTTGTTTCTCAATGCACAGTTCATTTGTTCTTGCTATCTCTCTTCTTACTATAAAAAATTTGTTACTTGTATACTTTCATGGCTTATCAAAGATTTAACTAACAATTTGATTGTTTGATTTTGACTTTGACACTGAGTTTAAGAAAACAAAGAGATTTTTGAATGTTGTGGGATCTTGTGGTTATGTGGGAAGTTCCAAAAAGGAAAATTGAAACTACATTTCTTCTCTCTGCTATCACC.....................................................................................................................................................................................................................................................................AGGAAACCATTTCGCTCGCTAGCAGCTCCAACTTACTAATCTACAAAGTTAAGGGTTATTTTACTCGTTGTATGGCTTCCTCAATGGTTGGGGCACAACCATCATTCTCAACACTAGCAATATCAACCAACGAACCTGTTGTTTCAGTTGACTGGCTCCATGCAAACATCAGAGACCCCGACTTAAAG................................................................................................................................................................................................................................................................................................................................GTGTTAGATGCATCTTGGTACATGCCAGATGAGCAGAGAAATCCACTCCAGGAGTATCAG.........................................................................................................................................................................................GTCGCTTGCATTCCTGGAGCACTATTCTTTGATATAGACGGAATAACTGATCGGACTACAAAT.....................................................................................................................................................................................................................................................TTGCCACATATGTTGCCGTCTGAAGAAGCATTTGCAGCTGCTGTGTCTGCTCTTGGTATCAAGAACAAAGATGGGGTTGTTATATACGATGGCAAGGGCATTTTCAGTGCTGCCCGTGTTTGGTG.................................................................................GATGTTTCGAGCTTTTGGACATGACAAAGTTTGGGTTTTGGATGGTGGCTTGCCAAGATGGCGTGCTTCAGGTTATGATGTCGAGTCACCTGGTGATGCCATTCTGAAAGCTAGTGTTGCCACTGAGGCAATTGAGAAAGTATACCAAGGACAGATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACCTTCTACCTTCCAGACCAAGTTTCAGCCTCATCTTGTCTGGAGTCTTGATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAGGAACATTCAAGACCAGACATATCAGCATATAGATGCTCGATCCAAAGCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGGTGTTGCACCAGAGCCTCGAAAAGGAATTAACAGTGGACATGTACCCGGGAGCAAGTGTATTCCTTTTCCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGGATGGCTCACAGACACTCTTATCCCGTGAAGAGCTCGAGAAAAAATTTGGTCAAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCTCTTTGGACAAGCCTATAGTTGCCTCTTGTGGCACAGGTGTAACTGCTTGCGTACTTGTCTTG....................................................................................................................................GGCCTCCATCGACTGGGGAAGACTGACATTCCAGTCTATGATGGTTCATGGACAGAATGGGCAACACAGCCAGATACACCTCTCTGCACATCTGAAAGATGAAGACGTTTGTATGGCCTGCCTAGTTTTTATGGGTGAGCAATGATGATTGTGAATCTAGATCTGGTTCCTTTTCTTAATGGTTAGTGCAACAACTTACATTGTATTGTTGAATGATAACAACGGAAAAATTTCTTCTCTGTTGTACAAAATGCCTTAATTTTACCTTCATTATATTTTTGGTTAGTGCAACAACTTCCATTAACTATACTTTGTACTAAAAAACACTCTTATGCTTGGATAAGTGAACTTAGAAAGGCCCCTGAAATCAAATGTATTCATGCGTTGTCCAGTTGGAGTTTATATTTGATGTGTCATTGAACATAAAACTACGCTATGCGTGATTATAAATATTTAGCGAAATAGATATTTGTATTTATACATATAATCATTTTTGGAACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587457" ref_strand="+" ref_description="SGN-U587457 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcaagtttcagccttatcttgtctggagtcttgatcaggttggtttccttgattgctttctgccgtacaacacttggtggtggttgcatctagccatgtatcatgaagctgatggtaatggcaaggactttttttggattattgacattcaggcggtattcaaaatccaactatttaaaattagattttttttaagagaaaggtaagagtagtattatgaagtctccagcacaaagactatgctaggaacaatatctactgttcaaaaagcaaaacaaaaggtaaaacatgaacgacactacaagtggactgcaatttagtgggtattagattgtaagtttgttggttgatatttgttacccttagtgcaactttgttctgcaaaaatctacctccgtttccctgattgactggtacaactctatgaagtttgtgaagaaaatctatgaggactagaactatgacaattggaggatgttttctacagaatattttgatctgttcgtggattctggtaatagctgctctttgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="+" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="27786" stop="28919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28085" g_stop="28619" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="+" ref_id="SGN-U587457" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28085" e_stop="28619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTTTCAGCCTCATCTTGTCTGGAGTCTTGATCAGGTTGGTTTCCTTGATTGCTTTCTGCCGTACAACACTTGGTGGTGGTTGCATCTAGCCATGTATCATGAAGCTGATGGTAATGGCAAGGACTTTTTTTGGATTATTGACATTCAGGCGGTATTCAAAATCCAACTATTTAAAATTAGATTTTTTTTAAGAGAAAGGTAAGAGTAGTATTATGAAGTCTCCAGCACAAAGACTATGCTAGGAACAATATCTACTGTTCAAAAAGCAAAACAAAAGGTAAAACATGAACGACACTACAAGTGGACTGCAATTTAGTGGGTATTAGATTGTAAGTTTGTTGGTTGATATTTGTTACCCTTAGTGCAACTTTGTTCTGCAAAAATCTACCTCCGTTTCCCTGATTGACTGGTACAACTCTATGAAGTTTGTGAAGAAAATCTAGGAGGACTAGAACTATGACAATTGGAGGATGTTTTCTACAGAATATTTTGATCTGTTCGTGGATTCTGGTAATAGCTGCTCTTTGTGAA</genome_strand>
        <mrna_strand>GCAAGTTTCAGCCTTATCTTGTCTGGAGTCTTGATCAGGTTGGTTTCCTTGATTGCTTTCTGCCGTACAACACTTGGTGGTGGTTGCATCTAGCCATGTATCATGAAGCTGATGGTAATGGCAAGGACTTTTTTTGGATTATTGACATTCAGGCGGTATTCAAAATCCAACTATTTAAAATTAGATTTTTTTTAAGAGAAAGGTAAGAGTAGTATTATGAAGTCTCCAGCACAAAGACTATGCTAGGAACAATATCTACTGTTCAAAAAGCAAAACAAAAGGTAAAACATGAACGACACTACAAGTGGACTGCAATTTAGTGGGTATTAGATTGTAAGTTTGTTGGTTGATATTTGTTACCCTTAGTGCAACTTTGTTCTGCAAAAATCTACCTCCGTTTCCCTGATTGACTGGTACAACTCTATGAAGTTTGTGAAGAAAATCTATGAGGACTAGAACTATGACAATTGGAGGATGTTTTCTACAGAATATTTTGATCTGTTCGTGGATTCTGGTAATAGCTGCTCTTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583534" ref_strand="+" ref_description="SGN-U583534 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|118484746|gb|ABK94242.1| (e_value=6e-26) unknown; (*ATH) AT1G79230.3 (e_value=2e-27) |; ">
      <seq>aattcgcacgaggaagtctccagcacaaagactatgctaggatacaatatctactgtgcaaaaagcaaaacaaaaggtaaaacatgaacgacactacaagtggactgcaatttagtgggtattagattgtaagtttgttggttgatatttgttacccttagtgcaactttgttctgcaaaaatctacctccgtttccctgattgactggtacaactctatgaagtttgtgaagaaaatctaggaggactagaactatgacaattggaggatgttttctacagaatattttgatctgttcgtggattctggtaatagctgctctttgtgaaggttaatagtttgatgattgtatgatagtccaatactggaaaaaaatgtgaacacaatcttgtcacttgacataggttaaaaggaacattcaagaccagacatatcagcatatagatgctcgatccaaagctaggtttgatggtgttgcaccagagcctcgaaaaggaattaacagtggacatgtacccgggagcaagtgtattccttttccacagatgttggatggctcacagacactcttatcccgtgaagagctcgagaaaaaatttggtcaagaaggtatctctttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="+" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="27992" stop="36904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28291" g_stop="28694" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28695" i_stop="28803" i_length="109">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28804" g_stop="28862" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="464" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28863" i_stop="33641" i_length="4779">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33642" g_stop="33723" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="546" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33724" i_stop="36538" i_length="2815">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36539" g_stop="36602" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="610" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="+" ref_id="SGN-U583534" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28291" e_stop="28694"/>
          <exon e_start="28804" e_stop="28862"/>
          <exon e_start="33642" e_stop="33723"/>
          <exon e_start="36539" e_stop="36602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTAGTATTATGAAGTCTCCAGCACAAAGACTATGCTAGGA-ACAATATCTACTGTTCAAAAAGCAAAACAAAAGGTAAAACATGAACGACACTACAAGTGGACTGCAATTTAGTGGGTATTAGATTGTAAGTTTGTTGGTTGATATTTGTTACCCTTAGTGCAACTTTGTTCTGCAAAAATCTACCTCCGTTTCCCTGATTGACTGGTACAACTCTATGAAGTTTGTGAAGAAAATCTAGGAGGACTAGAACTATGACAATTGGAGGATGTTTTCTACAGAATATTTTGATCTGTTCGTGGATTCTGGTAATAGCTGCTCTTTGTGAAGGTTAATAGTTTGATGATTGTATGATAGTCCAATACTGGAAAAAAATGTGAACACAATCTTGTCACTTGACATAGGTCAGAAAGATTGGATCTTTCAATATATTCTCCATAAATGTATGTATTCTTATCAGAATACTTCTAGCTTGGCTATAGAAATGGAGATATGATTTCTGTATATTTTCAGGTTAAAAGGAACATTCAAGACCAGACATATCAGCATATAGATGCTCGATCCAAAGCTAGGTACTTCATCATGTCTGCAAACCCATATTTTAAAATGTGATTGACTAATATGCTAAGCTATTTGTTCAACAACACTCACATGATGAGGAGAGTAGATTTTATTTGTCAATTATCTTTTGAAGCAGTTATAACCCTTGTGAATTTACTTTTTAGATTTTACTTCTCCCTCCTAATTTATGCGACACATTAAGTCAGAAAATGTTTGGCACATGTTATGAATAATAGTGATGTTCAATTTGACCATTCTATACTCTTAAGAGTTCAACTTCAAACTCAAATAATGAGGTTATGCTTTCCTTTGCAACAGTTAGCTCTATAGCAAGTCAAATTGTCTTTGTGCCTTGTTAAATATGTCGTTTGATTAGAGAGTAATATCTTTTGGCATGTCTTGTCATCTATAGGGCCTTGTTGGATGCTTTCCTTACAAACAATTAGTTCAATATGCTAGTCAAAGAGAGGCTGCTGTCTTGTTGTATGGTTAGAAAGGTCGGAGTAATAAATTTTGGCACATCTTGGGATTTAGATAGTTAGATTGCCGTTATATGAATATGTATTTCTTTCTTATGCTACATTATCTTTAGGACATGTAGACAGAAACTTCTTCTCCTAAAGTGAAATGTTGGCATAGCCAACTTTAACATTTTGTAATGGCTGCAATTGATGTGCCTTAGTGAGCAGGAAAACTTAGATAAACATTATTAGTGGTTACCATCGAGAAAGGATGGAATCTGAAAATGTTGCAATTATATCTTTCCTGACAACTCTCAAGTTTACCACAGTCATGAAGTCATGAGTTATTAGGGACCACTCATTACATAATGTGTGAAAGGCTAATTGGGGTGCTTATATATTTTTTCTTTATACAACATAACGTGTGATCTGGAGAGGGTAGAGTGCACACAGACTTTATCCCTGCCTTGAGAAGGTAGATATGTTGTTTCCGATAGACCCTCGACTCATGTAAAACATTTCAAAGCAGTTTAAAAAGGGAAAACAATAGTAAAGTAGACATATCAAATAGGGAAAGCATTACTTAACATTCAAAAAAAGGAAAAGTAGCAATAGCAAAATAATGTGACAAACAAGGTACTAGAAATAACAGGCAGCAGTAGAAGTCACAGGGCTAGGAACTACGAGAACAGATACTAATACTACTAGAATGAGAGGAGAACAAGTACACTTCTCTACACTACCACCAAGCCTTTCCTGCAGGAATGCGAGACAATACTTAATTACCTACTAATATCTACCCTAATCCATGATTTCCATAATTTCTATTTAAAGTCATTCCTCGGTGAGCTAAAGATGCATCATGTTATGTCCAATAACCTCTCTCTAATACTTTTTTGGTCTACTTCTTCTTGAACCCAACATTGCCAACCTTTCACACCTCCTAAATAGAGTATTTGTGCATTTCCTCTTCACATGTCTTCATCATTTTAGCCTCGTTTCTCTTATCTTATCCACACGGGCCACTCCCATCTTGTTTTAGATGTTCTCATTCCTAATCTTATCTCTCTAAATATGCCCACACATCAAGCACAACATCTTCATTTTCGCACCTCACATCTTCTGGACACGTGAGTTCTTAACTGACCAACAATCTGCCCCATAAAACAGTAGGCCTAACTACCGCTCGATAGAACTTGCCTTTAAGTTTTGGTGGTGTATTTTTATCACACAAGACTCTAGAAGCGAGCCTCTATTTTGTCATTCAACACCAATACGAAGTGTGAGATCATCGTTGATGTCTCATTCTTTTGGATTAAACAACAATAACAACACACCCATTGTAATCCCATAAAGTAGGGTCAGGTAGAGTGTACGAAAACTTTACCCCTACCTTGGAGGTAGAGAATCTATTTCCAATAGATCCTCAGCTCAAGAAAAAATGGTTCAAAGTAGTATGAAATAGTAAATGACAGAAGTGAGAAACTATGACAAATCATTCTAAACAGTGGCTACAATTGAATAATACAACAATTGTTGAAGAGTCCCACATCAGATTAAAAAAGGACATGTGGTCTCTTTATAGGCTTGAGCAATCCTTCCTTTGAGCTAGCTTTTGGGGTTTGAGTTAAGCCCAAAACTTAATTTAACATGGTATCAAATCAGAATCCATCTCAATTAATGTTTACTGATGATAAGCCTATAAATTAGATTGTCCACACACCAGATGTCCAATCCTAGGCGAAGAGTCCCAAGAGCTATTCTTCATTTTCTTCCAGATCTCTAAATGTATTACCAAAACTAGGAGCTTATGTTGGTTCATAAGCGTCTCACCCGGGATGACTTTGTAGTCTTTACAAAGACCTTTATCAACTTTCTTAGGGGGAAAAATAGTCTATTTGTCTTGCCCAATGTACTGTGGAACTTACCAAGTTCTCCTCCTTATTTGAGAAACTCAAACTGGCTACCCCAACCTAAAGGCTCCTGCATAATCTAGAAGTGAGCCTTTTCTTTTTCCTGTTCCCGGAACCGAAACCTCTATGCACTTGTCATAGCCCCGTGGAGTTGACCCGATTTGTCCATTAAAATCTCCTCATACGGATAACTTCTCAGTGAACGATATATCTTCCATTACCTTGTCAAAATCAGTTCTTGTCCGTTTTGCCCAAGCCCGCTTGTGGTGTGCATGGACTAACGATGTTCAAAGTGGACCCTCCAATGACTAATTTAATCGTTATCATCTTGTCGTTGATTCTCCAAACCTCTACCACTTGCTCCCTTATTTCTCTATCTATTAAGAATCCTACTCCATTTGTATTACTCAAGACTACTAAGTACCAAAATTTGTACTTGTCCACATCTAACGCCTTAGTACCTACCCATATGGTCTCCTAGGCACTAGCTACACATCTTCCTCTTTTTGAGAATCTTCATTAGTTTATGGACTTCCCCATTAAAGTCCCTATGTTCCAAGACCCCAATCTCAGCCTAGAAGATCCCATAACCCACTTACCATCCCTGACCCTAGCCTCTGTCCCCGACTGAGAAAATAACTAATCAAGGGCTTACATCAAAATGAGCAGGAATCAATACTCAAGAGTAAAGACAGAGTAAGAATCCAAGGACCAAAGTCAATAAGGCAGGAGCTGAAGCACAATTGAGCAAGAATTTAAAGACGAGTACAACTAATAAGACAAGAATGGTAGCACTAACGGCTGAGAGAATTGTACACAAGAATTACTAGGGCAGGATCAAAGCACAAGCAAGCAAGGATCTAAAGGCAAGAATTTCTATAAGACAAGGATGATTTCACCCGAATACAAACCTTTGATATTTGGAACTTCTTCTCTTGGGGATGACCTGCTTATCAAGCCTCACTTCTACGCCAACCTCTTGTGTCTCATCACTGAACTTGCAGTATAAGCACTCCTTTGGGGTCCCACTCAACCTGGACCCTTTAGACTCTAAGATTCGTGTCCAAACTTCCAGCCTACTGTTAACTCCATTGCGTGTCTGGTCAATCAGTACTATGTCATTTGCCAATAACATTCACAATGGCACCTTTCCTTGGATATGACGTGTCAACTCATCCAACACCAACAACACAAATAGAAACAGGCTTAGAGCGGATCTCTGGTGCAACCCCATTATGACTTAGAAGTGTTCTAAGTCTTCTTCCAGTGTTCTTACCGGCTTGGCTATTGTACATGTTCTGAATCACTCTACTGTATGCCACCGATACACTTCTAACCTCCAAACACCTCCATAGAACCTCTCTTGGGACTTCATCATAAGTCTTTTCTAGGTCAATGAACACCACAGGTATGTCCTTATCCAAATGAGCCCATTAACTCTACAAAATGCAAAACCTCAACTTTTTCATGTAAGAAACTAAGATGCCTATGATGCCAAGTATAATCAGAATTTTTTACTATACTCTTCCAGATGTCACAGCTTGCGGACCCAGTTAAGAGCCATTTGATTGCTTGATATGCATTGACATGTATGTGCATAAGATTTAGAAAGAAAAACCACTTCTCTTTATATTTTAAGAATATTACTAGTTTCGTTCTTTGTGTGATGTCAAGGAGCAATTCTCACATTAACTTCTTTGTAGGATTTCTTCCCTTTGTGGTGTCAGTTCCTTGTTTACGAATAAATAAGGATTGATATATTCTGTTCATAGGTACTTGTATGATGATGGTCTAGGAAAAAATCATCTGTTCTAGAATAGTGTTTACAGGGTAGGGCATATTTACATTTTCAAGTTGTTTTGGTGAAGTTACGCTCTTAGTCATTATTATTTCAAGAACTGCAATTGTTTTGTATAGTCATTCCCGTTACGAGTGGCTTCTGTCCAAGAACGAGTAGTTGTGCATATCTTCTTTTCCCAATAAATTACAATACAAACACTGCTCTCTGCAGGTTTTGAGTTTAAAAAGCTATGTAAATGTGGTACCTATACTCTACATACTTAAGATATGATGTTGAGGAGAAATAGTTTTTTAATTTGGATATTTAAAGATGGGCGTAATCTTCCTCTATGAGCGAGACGCCATCCAAATCTTCCACTCCTTGGGCGAGGCCTTCTGTTCTATGAACACCCCATCACTGAATGATTCACTTTCAAATTCTCGCTGTAAATACCCGGTCGTAAAATTAGGAAAAAACTTTGACTAAGAAGAGGTAATAGAGGGAATAAATTTATCAACTGCAGCAAACTGAAGCAACTGTAATTGGTTAATGTGTAAATTTTCTAGAGTTCAAATGCAAGCTTAATTTTTTTCATAGAGTTAAGTTATCTGGATTTTTGTTTTGCAACTGTTTTAGGTTTGATGGTGTTGCACCAGAGCCTCGAAAAGGAATTAACAGTGGACATGTACCCGGGAGCAAGTGTATTCCTTTTCCACAGGTGAGGATCTGTGCATTGAAGAAAAAAAACGATTTTTCAATATTCTATGGCAGTTTTCCTGTTTCATCTCCTGTATAAAAACATTTCCTGCTTTCAAATGAAGATATGGTGAAGTATTTCTGTTTGAATAGGTTAAACTATTTGTCTCATATTTCCACTGTGCTTGATGCTCCTTGACCATGGATAATTTACTTCCAGTCATTGATATCATCTGGACTACCGAGTGCATGACAATATAAGTTTCTAACAGTTGACAATGATCAAAACCATGAGCTTGTACTAAGTTTGATGCATTTTGCTTAAAACCTTGTAACAGAATGTTAAGGCCCAAATTATGAAATTTCAATACTATGCCTCTCAGAGATGCAAGTCACAAAAATGAATGTGAAAATGCTCTCAGGCACAGTTATTGAGGTCAGAAAAGACTTGTTCTTTTCCAGCCGTTTGTAAAGTTTCTGGCATCTTTACAGTTATTCGTTAATCACATTCATCAGTTATTACTACAAAAATTGGTATAGATTCAACATGTGTGGGGAAGGTTTGGTTTGAATGGGTGGAATAAAACAGAAGGTTGATGTGCGGAGCTACTTTTAGTAGAAAAACCATGGAGTTATTGTGCTTTGTTTTATGGGAGGTATCAAGACATTCTGATATGCATGGCCGGAGATGGAAACTAAACGAACATCATTCAAGTTACTTTGTATACACTATTAAACGAATCTGGTTTAAGATTGATCCAACAGCCTATGCCAGTTAAAGTGATGGGGTAACAAATATTTCAATTAGGCTCAGTTTTATTTACCGAGTCCCAGCTCTTTAAACCAAACCATTTTACTATGGTCGGTTTATAATAAAATGGGACCAATCTTTGTGGAGATTGAAGCAAATAAATCAGTCCTTGGTAACTCCAAATGCAGCTCTGGAAAGAGAAAAACAGCAGGAGTTTTGAAAATTGGCATAATAGCTTACAGAAGATCAAGATGGATGCTTAGCTCTTTTCTATTTTTGGTGTAAACAAGATATTAACTAGGACAGAAAATATCTTTGATGTGCTAGATTGTTCATAGGTAGCAGTTTAGACTAAGACTATTTTATTCGAGAAAATGGTTTAGAACCCCCCTAATTTATATCTGAAATCTCAACTACACACTTATTCATTACGAAAGTCCCATTACACTATTTTAAAGTAGAATTATTTGCTCCCTGGATGATAATGTGGCAAGGTAAGTGTAGGACACTCTCTCAAAGAGAGTGAGAGGTAAAAATACTAATTAAAACTTTAGATTTTAAAAATATTTCTTAAATTTATATTATAATTTTTTTATTCTTCAAAAATCTTTTGTTTCTTTTTTTAAAAAAATTATTTTTTATGGTCTTTCTTCTTCTCTTTACCAAAGCTACATCGGCGGCGGTTCTGCTCCACCACCAAGTCGGCGCCCTCACCGACTCTAATCATTAAGTTAACTCTTTTTTTTCAAATCACAAATTTCTCACAGTTAGTGTGAAAAATTGACAAGAACTGAAAATCGAAATCGAAAGTCAAGAGGATCGAACTTTAAAGTTATTAATGGAGAAAAATTCATCAAGTTACAGATCCATCGATGGAGAAGAACTCATCAACAAAATCATTAGGTAACAAACCCATTTATGAAAAAGACCCAATAATCGAAATGAGTTGCTGAACATTGTTAAATTCTAGCTTCAATACAAATCATCAAAAATTTTCTTGTGCTCATAACTCCAATGAGGCTCGAAGAAGATGGTGGCAGTCATATAAAGTATCTCCAAATCTGAAAAATTTGTTGTCGAGATTAAAGAAAAAGATGAATGGAAAAGGAAAGTGAATCAAAGAAGAAGAGGAATGGAAAAAGGAAAGTGAAAGAGAAAGATGAAAATATAGATGAAAAAATATTGCAGCATAAAGTTTTTTTGTTTTTTTTTAAAAAATGGTTAGATTACGTGGCTGAGCGCATGAGATTCATTATTTCATATAAATCTGGTTGTGTTTTTAAGGGGTATATATTTTACTTTTAAAATGTTCTGGGGGGTAATAGAACTCCCGTAATGAATAAGTGTGTAGTTGGAATATCGGGTATAGTAGATTAGGGGGGTTTTAGACCATTTTCTCATTTTATTCTGTTATTTGTAAAACTTTTGAAGGGGAACTACACTGTTGTTATAGTATACCTGTGGATATATAGACTAAAGTTATCAGTTTAAAAAAAAAAAAGATTCCTTGTAAGAGAAGCAAGGATGGTAGTTATTTTTGGGTCCTTAGATGTAACACTCATATATTTGGTTTCCAGAACAATCTTTGATGATTTATATACTGATCTTGTTATATTCTCAAAAAAGAAAAAAAATCAACTCTTCTCTGGTCTTCCAAGAATCATTTTGGGCATATTGGCTCTTGGATCCTACACTGATGCCTTCGTCTGCCTGCAAAGATTCTTGAAAACTGAGGCATTCTCATCTCTTTGTCCCCTTATGCTTGACTTTGCGCCTAAGCCCTGGAAAACCTAGTGTGTGTAGTACCTGTTCAGTTTATTAGCTTCTATCTACTCTTTGATGATTTATGTAGAGACTATCTGGTTGAAGCTCTGAAATAACCTTGGGTAGTCATCATCATCAGTATGAGAGTGTGAAACAATAAATGAGCTTTACATGTTTTGCCTGTATTTCCTTGTTTCAAAGCTTAATCCCTACTGAGTAATTCCTAGATCAAGTTCTGTAGCTGTGATAGATTCAAATCTATTTTTTTTTTTTAAAAAAAATCAAATATTCAAATCTATATGTTTGTGGTGATTCTTATCAGATGTTGGATGGCTCACAGACACTCTTATCCCGTGAAGAGCTCGAGAAAAAATTTGGTCAAGAAG</genome_strand>
        <mrna_strand>AATTCGCACGAGGAAGTCTCCAGCACAAAGACTATGCTAGGATACAATATCTACTGTGCAAAAAGCAAAACAAAAGGTAAAACATGAACGACACTACAAGTGGACTGCAATTTAGTGGGTATTAGATTGTAAGTTTGTTGGTTGATATTTGTTACCCTTAGTGCAACTTTGTTCTGCAAAAATCTACCTCCGTTTCCCTGATTGACTGGTACAACTCTATGAAGTTTGTGAAGAAAATCTAGGAGGACTAGAACTATGACAATTGGAGGATGTTTTCTACAGAATATTTTGATCTGTTCGTGGATTCTGGTAATAGCTGCTCTTTGTGAAGGTTAATAGTTTGATGATTGTATGATAGTCCAATACTGGAAAAAAATGTGAACACAATCTTGTCACTTGACATAG.............................................................................................................GTTAAAAGGAACATTCAAGACCAGACATATCAGCATATAGATGCTCGATCCAAAGCTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGGTGTTGCACCAGAGCCTCGAAAAGGAATTAACAGTGGACATGTACCCGGGAGCAAGTGTATTCCTTTTCCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGGATGGCTCACAGACACTCTTATCCCGTGAAGAGCTCGAGAAAAAATTTGGTCAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603324" ref_strand="+" ref_description="SGN-U603324 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|77563563|gb|ABB00038.1| (e_value=3e-16) reverse; ">
      <seq>tcgtgtccaaacttccagcctactgttaactccattgcgtgtctggtcaatcagtactatgtcatttgccaataacattcacaatggcacctttccttggatatgacgtgtcaactcatccaacaccaacaacacaaatagaaacaggcttagagcggatctctggtgcaaccccattatgacttagaagtgttctaagtcttcttccagtgttcttaccggcttggctattgtacatgttctgaatcactctactgtatgccaccgatacacttctaacctccaaacacctccatagaacctctcttgggacttcatcataagtcttttctaggtcaatgaacaccacaggtatgtccttatccaaatgagcccattaactctacaaaatgcaaaacctcaactttttcatgtaagaaactaagatgcctatgatgccaagtataatcagaattttttactatactcttccagatgtcacagcttgcggacccagttaagagccatttgattgcttgatatgcattgacatgtatgtgcataagatttagaaagaaaaaccacttctctttatattttaagaatattactagtttcgttctttgtgtgatgtcaaggagcaattctcacattaacttctttgtaggatttcttccctttgtggtgtcaagtccttgtttacgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="+" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="31983" stop="33268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32283" g_stop="32968" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="+" ref_id="SGN-U603324" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32283" e_stop="32968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGTCCAAACTTCCAGCCTACTGTTAACTCCATTGCGTGTCTGGTCAATCAGTACTATGTCATTTGCCAATAACATTCACAATGGCACCTTTCCTTGGATATGACGTGTCAACTCATCCAACACCAACAACACAAATAGAAACAGGCTTAGAGCGGATCTCTGGTGCAACCCCATTATGACTTAGAAGTGTTCTAAGTCTTCTTCCAGTGTTCTTACCGGCTTGGCTATTGTACATGTTCTGAATCACTCTACTGTATGCCACCGATACACTTCTAACCTCCAAACACCTCCATAGAACCTCTCTTGGGACTTCATCATAAGTCTTTTCTAGGTCAATGAACACCACAGGTATGTCCTTATCCAAATGAGCCCATTAACTCTACAAAATGCAAAACCTCAACTTTTTCATGTAAGAAACTAAGATGCCTATGATGCCAAGTATAATCAGAATTTTTTACTATACTCTTCCAGATGTCACAGCTTGCGGACCCAGTTAAGAGCCATTTGATTGCTTGATATGCATTGACATGTATGTGCATAAGATTTAGAAAGAAAAACCACTTCTCTTTATATTTTAAGAATATTACTAGTTTCGTTCTTTGTGTGATGTCAAGGAGCAATTCTCACATTAACTTCTTTGTAGGATTTCTTCCCTTTGTGGTGTCAGTTCCTTGTTTACGAAT</genome_strand>
        <mrna_strand>TCGTGTCCAAACTTCCAGCCTACTGTTAACTCCATTGCGTGTCTGGTCAATCAGTACTATGTCATTTGCCAATAACATTCACAATGGCACCTTTCCTTGGATATGACGTGTCAACTCATCCAACACCAACAACACAAATAGAAACAGGCTTAGAGCGGATCTCTGGTGCAACCCCATTATGACTTAGAAGTGTTCTAAGTCTTCTTCCAGTGTTCTTACCGGCTTGGCTATTGTACATGTTCTGAATCACTCTACTGTATGCCACCGATACACTTCTAACCTCCAAACACCTCCATAGAACCTCTCTTGGGACTTCATCATAAGTCTTTTCTAGGTCAATGAACACCACAGGTATGTCCTTATCCAAATGAGCCCATTAACTCTACAAAATGCAAAACCTCAACTTTTTCATGTAAGAAACTAAGATGCCTATGATGCCAAGTATAATCAGAATTTTTTACTATACTCTTCCAGATGTCACAGCTTGCGGACCCAGTTAAGAGCCATTTGATTGCTTGATATGCATTGACATGTATGTGCATAAGATTTAGAAAGAAAAACCACTTCTCTTTATATTTTAAGAATATTACTAGTTTCGTTCTTTGTGTGATGTCAAGGAGCAATTCTCACATTAACTTCTTTGTAGGATTTCTTCCCTTTGTGGTGTCAAGTCCTTGTTTACGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573238" ref_strand="+" ref_description="SGN-U573238 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157357899|emb|CAO64911.1| (e_value=4e-34) unnamed; (*ATH) AT1G79560.1 (e_value=7e-30) | Symbol: FTSH12 | encodes an FtsH protease that is localized to the chloroplast | chr1:29931687-29937899 FORWARD | Aliases: T8K14.2, T8K14_2, EMB1047, EMBRYO DEFECTIVE 1047, FTSH12; (*SWP) sp|Q9SAJ3|FTSHC_ARATH (e_value=6e-29) Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12; ">
      <seq>gacgaccaagaccggcgacaattcagtttttccgacgagcaagagagccgaaaccgaagcattatcttcgtattctctaagcttctcaatgcatctaaccactactcctcctcctcaacagctgaattcaatacaattatcttcaaaaccccttttactcacattgccattcaaatgcagaaggaagttttcccgtataagaagacctaccattgtagcttcttcttccaatactaataacagtcctgaagggttttcttggctgcaactttcacagtccattcgccgtggttccgaacgtttcttgaatcaattggaagactctgtgaagcaagagacgggttttgattttaaggatgttaaagttaaagttggggaattttcaggtcgagctgttgattcagccaagaatggccaagttttgctgcaacgttttcagtctgagttgtttcctgagttcttgaattggaacaaattcgagtcctggaaggtgaattttcccatttcttatttgagttatttgtataactttgtgctcacattatcctttttccccttccccccaggacgtcaagaaatgggattccaaaagaagtggtgtattcattctctatattatagttacggtatgttcttgtcaaaaatatatatggcaattcgagctcctattattaatagggaaagaaaagaacttactgaggcatacatggaagcattgattcctgaacctactcctggtaatgtcaaaaggtaaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="+" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="39061" stop="40420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39361" g_stop="40110" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="+" ref_id="SGN-U573238" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39361" e_stop="40110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACCAAGACCGGCGACAATTCAGTTTTTCCGACGAGCAAGAGAGCCGAAACCGAAGCATTATCTTCGTATTCTCTAAGCTTCTCAATGCATCTAACCACTACTCCTCCTCCTCAACAGCTGAATTCAATACAATTATCTTCAAAACCCCTTTTACTCACATTGCCATTCAAATGCAGAAGGAAGTTTTCCCGTATAAGAAGACCTACCATTGTAGCTTCTTCTTCCAATACTAATAACAGTCCTGAAGGGTTTTCTTGGCTGCAACTTTCACAGTCCATTCGCCGTGGTTCCGAACGTTTCTTGAATCAATTGGAAGACTCTGTGAAGCAAGAGACGGGTTTTGATTTTAAGGATGTTAAAGTTAAAGTTGGGGAATTTTCAGGTCGAGCTGTTGATTCAGCCAAGAATGGCCAAGTTTTGCTGCAACGTTTTCAGTCTGAGTTGTTTCCTGAGTTCTTGAATTGGAACAAATTCGAGTCCTGGAAGGTGAATTTTCCCATTTCTTATTTGAGTTATTTGTATAACTTTGTGCTCACATTATCCTTTTTCCCCTT-CCCCCAGGACGTCAAGAAATGGGATTCCAAAAGAGTTGGTGTATTCATTCTCTATATTATAGTTACGGTATGTTCTTGTCAAAAAATATATATGGCAATTCGAGCTCCTATTATTAATAGGGAAAGAAAAGAACTTACTGAGGCATACATGGAAGCATTGATTCCTGAACCTACTCCTGTTAATGTCAAAAG</genome_strand>
        <mrna_strand>GACGACCAAGACCGGCGACAATTCAGTTTTTCCGACGAGCAAGAGAGCCGAAACCGAAGCATTATCTTCGTATTCTCTAAGCTTCTCAATGCATCTAACCACTACTCCTCCTCCTCAACAGCTGAATTCAATACAATTATCTTCAAAACCCCTTTTACTCACATTGCCATTCAAATGCAGAAGGAAGTTTTCCCGTATAAGAAGACCTACCATTGTAGCTTCTTCTTCCAATACTAATAACAGTCCTGAAGGGTTTTCTTGGCTGCAACTTTCACAGTCCATTCGCCGTGGTTCCGAACGTTTCTTGAATCAATTGGAAGACTCTGTGAAGCAAGAGACGGGTTTTGATTTTAAGGATGTTAAAGTTAAAGTTGGGGAATTTTCAGGTCGAGCTGTTGATTCAGCCAAGAATGGCCAAGTTTTGCTGCAACGTTTTCAGTCTGAGTTGTTTCCTGAGTTCTTGAATTGGAACAAATTCGAGTCCTGGAAGGTGAATTTTCCCATTTCTTATTTGAGTTATTTGTATAACTTTGTGCTCACATTATCCTTTTTCCCCTTCCCCCCAGGACGTCAAGAAATGGGATTCCAAAAGAAGTGGTGTATTCATTCTCTATATTATAGTTACGGTATGTTCTTGTC-AAAAATATATATGGCAATTCGAGCTCCTATTATTAATAGGGAAAGAAAAGAACTTACTGAGGCATACATGGAAGCATTGATTCCTGAACCTACTCCTGGTAATGTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598547" ref_strand="+" ref_description="SGN-U598547 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|4835753|gb|AAD30220.1|AC007202_2 (e_value=3e-62) Is; (*ATH) AT1G79560.1 (e_value=3e-64) | Symbol: FTSH12 | encodes an FtsH protease that is localized to the chloroplast | chr1:29931687-29937899 FORWARD | Aliases: T8K14.2, T8K14_2, EMB1047, EMBRYO DEFECTIVE 1047, FTSH12; (*SWP) sp|Q9SAJ3|FTSHC_ARATH (e_value=2e-63) Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12; ">
      <seq>gcagaacaattagattcagtaaatgcgaggtatgtggttgaatttgacatgaaggaagttgagaacagccttcgcaaagatgttgttgagaagacaagagaaactcaaggaaccagggcattgtggatctcgaaaagatggtggagatatcgcccgaaacttccctatacctattttcttcaaaaacttgatacttctgaggtggctgctatagtcttcacagaggatctgaagagagtgtttgtcacaatgaaagaaggattccctcttgaatatattgttgatattccactagatcctttcttatttgagatgatatcaagttctggagctgaagtagatctacttcagaagcggcagattcattactttttcaaagttctttttgctttattgcctggaatactgattttgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="+" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="41841" stop="43321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42141" g_stop="42341" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42342" i_stop="42715" i_length="374">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42716" g_stop="42793" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="279" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42794" i_stop="42883" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42884" g_stop="43021" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="417" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="+" ref_id="SGN-U598547" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42141" e_stop="42341"/>
          <exon e_start="42716" e_stop="42793"/>
          <exon e_start="42884" e_stop="43021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAACAATTAGATTCAGTAAATGCGAGGTATGTGGTTGAATTTGACATGAAGGAAGTTGAGAACAGCCTTCGCAAAGATGTTGTTGAGAAGACAAGAGAAACTCAAGGAACCAGGGCATTGTGGATCTCGAAAAGATGGTGGAGATATCGCCCGAAACTTCCCTATACCTATTTTCTTCAAAAACTTGATACTTCTGAGGTAAATGTTTATCTTCTCACTTCTGTATCTCTTCATACTCAGATATGGTTGGTCCCTTCTGGTTCTAATGCTTCCAAGTGGAAATAAGTGTGGATGCTTTTAAATCTACAGTATTAATGAATACATGGTACATTTTAAGGATTGTACTTCAAGTTGTGGCATGGGTGACTTGATGCCACCCTATTCTTCATTCTTTTGAATGATGTTATAAGGGAAAATAGCAAAAGATAGATTTCTTAAAGAAAACAGTTTCCTTTTCTTGAACTCTAGCTGGAAACTAAAATTATCTTTTACATGTGGATCAAACTAATTTATTTTCTTTACTTGGATATGGACGCACTTCCAACTAGATTTACTGACTTAGTGTTCTGCAGGTGGCTGCTATAGTCTTCACAGAGGATCTGAAGAGAGTGTTTGTCACAATGAAAGAAGGATTCCCTCTTGAATATATTGTGCGTAAGACATATTAACCTTTCCAGAATAAAGTCATCACTGTTCCTGAACTCCTGACCTTTATACTGATTAATGTATTCTCTTCTCAGGTTGATATTCCACTAGATCCTTTCTTATTTGAGATGATATCAAGTTCTGGAGCTGAAGTAGATCTACTTCAGAAGCGGCAGATTCATTACTTTTTCAAAGTTCTTTTTGCTTTATTGCCTGGAATACTGATTTTGTGG</genome_strand>
        <mrna_strand>GCAGAACAATTAGATTCAGTAAATGCGAGGTATGTGGTTGAATTTGACATGAAGGAAGTTGAGAACAGCCTTCGCAAAGATGTTGTTGAGAAGACAAGAGAAACTCAAGGAACCAGGGCATTGTGGATCTCGAAAAGATGGTGGAGATATCGCCCGAAACTTCCCTATACCTATTTTCTTCAAAAACTTGATACTTCTGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGCTATAGTCTTCACAGAGGATCTGAAGAGAGTGTTTGTCACAATGAAAGAAGGATTCCCTCTTGAATATATT..........................................................................................GTTGATATTCCACTAGATCCTTTCTTATTTGAGATGATATCAAGTTCTGGAGCTGAAGTAGATCTACTTCAGAAGCGGCAGATTCATTACTTTTTCAAAGTTCTTTTTGCTTTATTGCCTGGAATACTGATTTTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574669" ref_strand="+" ref_description="SGN-U574669 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|18412421|ref|NP_565212.1| (e_value=2e-74) FtsH protease, putative [Arabidopsis thaliana]; (*ATH) AT1G79560.1 (e_value=2e-76) | Symbol: FTSH12 | encodes an FtsH protease that is localized to the chloroplast | chr1:29931687-29937899 FORWARD | Aliases: T8K14.2, T8K14_2, EMB1047, EMBRYO DEFECTIVE 1047, FTSH12; (*SWP) sp|Q9SAJ3|FTSHC_ARATH (e_value=1e-75) Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12; ">
      <seq>ggctgcacgaatcaatgaaatgttttctgttgctaggagaaatgctccagcttttgtatttatagatgagattgatgctattgctggaaggcatgcaagaaaggatccacgcaggaaggcaacatttgaggctctgatttctcagcttgacggggagaaagaaaaaactggtgttgataggttttcactaagacaagctgtcatattcatctgtgcaaccaatcggccagatgaactggacttagaatttgtcccgccctggacgtattgacagacgtgtgtatattggtttaccagatgcaaagcaacgagtgcaaatttttggagttcacagtgctgggaaacagctttccgaggatattgcctttgagaaacttgtctttcgtacagttggatattctggggcagacataagaaatctagtcaatgaagctggaataatgtctgtaagaaaaggacattctaagatcaaccagcaggatatcgtcgatgttttggacaagcaattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="+" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="43271" stop="48624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43570" g_stop="43612" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43613" i_stop="44828" i_length="1216">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44829" g_stop="44941" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="156" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44942" i_stop="45603" i_length="662">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45604" g_stop="45820" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="374" r_length="218" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45821" i_stop="47174" i_length="1354">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47175" g_stop="47246" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="446" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47247" i_stop="48259" i_length="1013">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.164" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48260" g_stop="48324" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="511" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="+" ref_id="SGN-U574669" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43570" e_stop="43612"/>
          <exon e_start="44829" e_stop="44941"/>
          <exon e_start="45604" e_stop="45820"/>
          <exon e_start="47175" e_stop="47246"/>
          <exon e_start="48260" e_stop="48324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGCACGAATCAATGAAATGTTTTCTGTTGCTAGGAGAAATGTAAGTCTACTTCTTCTAATAAAAAAATTGACATCATATAGGGATGGGAATGTTCCTCAAAGTAAAAAAATTGCATCTTATGATTTCTATACCGAAAGCAGCTACCAGTCAAATGTTAAAGGGGGTGGGGGGGGGGGGGGGTAAGTCTCCAAGGAAACTTCTAAACCAGTAACAAATATTCAGTCTAACTCAAAACCAGAAACTTATTTTTGTCTAGTGTGCTTTTACGATGCATTAAGCATAAGTTACTTTAGCTGTTAGTCTTTTTTCAATTTATGTTAAACTCTTGGTCTCACTATTTGAAGTTTGAACCAAACACGAATAACCAGGTCTTGAGCATGCTGAGTAACTACTGGGGATGAAGTACAACAACAACAATCCAGTATATTCCCTCATGTGGAGTCTGTGGAGGGTCAGGTGTACGCAGATTCCTACCTTGAGGGGGTATAGAGGTTGTTTTCCGATATACCCTTGGTTCGAGAATAGTTTTGAAAGAAGAACAAGAGTAAAAATCAATGATGAGGATAATGAAGAAAGTAAAGCACTGAGAGTAAAATAGTGTAGATAACCAAAGTAAATGAAACATCACCAGTGTTTTGGAGAGTGAGAAGCGGAAAAGAGCGACAAGGGCTCGGCGTGAAGCAAAGCACACTTCTTTCAACTGAACTGCTATTCAATACAAAAATAAAGAAATATCAAATATGTTTTACTATCTTACCTAATTTGGCCCACTTCGTGCCCCAGAAGGTAGCACTTAATACGAAAATATTAGCCATGTGGGTGCATATACTGGCTGGTACTTCTTGCGGTAGCGGAAGCTATTTGTGTCTACTAAGATCGTAGATGTTTTGATACCATGTGAAAATAATTAAAAAACTTCTCATGAACTTGATTAACAAGGTACAAGAGGTGGTCCTTATAGGAGTATTAGGTTACATATAGTAAGAAGGTAATCGATCTCTATGCTGATAAGGTTAATAAATTCTATTTATTAAATACAATATATGCTAAGGTACCTTATAAATTTTTTAAAATGAATTTCCTTGGGTTGAGGCCCTTTTCCCAACCCTACTGCATTTATGACCGGTCTGCCTTTTTTTTTTAATGTACAAGAAACAAGATTATATGAATCTAGACACATATTTACTCGTAATTCAACAATTTACTTTTGCTAATTCAAGGGGATAAAATTTACATTCAGTTGTCCTCTTTGTAGGCTCCAGCTTTTGTATTTATAGATGAGATTGATGCTATTGCTGGAAGGCATGCAAGAAAGGATCCACGCAGGAAGGCAACATTTGAGGCTCTGATTTCTCAGCTTGACGGGGAGTGAGTATCGTAATCTCATTTCATGGATATAATACTCTTCTTTGCAATGAAAATTTCATATTGGAGAACACTATAGTACAGCTGTTTTTGATGAGATCTGATTCTAGAATCTTATTCTGCAGTCTGGTTGATATGGCTTCTCAAAGAAGAACATTTCCCTTTCTTCCCTACCCTGTCTACAATCTTTAGCCAGTGAAATCTTTTGCTGTTGAATTATGCATTTTTATATTATGAGGCAATGAAAAATCTTGTGAACTTTGGAGTCTTTTGCTCTTTTTGTCGAACTATGAACAAATATGAGTTAATGTGTCTTGGCAAATTGACTAACTTGCAGCACCTAACAGTTTAATTAATATGTGGACATCACTTTATAATGTCCTTTAAGTGTTGTTTCAAAGAAGAGAAAATATGACGCATGTTCTGTTTGCATCTTCTGTTACGAGTTAGCAATATTTTCTCATACTGGAAACGCCAAGATTTCTGTGATTATTTATTTTGGTATGTTTATCAAGTGTACTGCTAGAGATAGAAATTACAGTAACATGCCTAGCAAAAAAGATTACTCTAATATTCTAGAGAAGTATTGAAGGCAAAGCCATTTTTTCTCTCCTATATCCCTGTATGGTTGTGCAGCCAAGATAATAAAGGACTTGTTTGTGCAGGAAAGAAAAAACTGGTGTTGATAGGTTTTCACTAAGACAAGCTGTCATATTCATTTGTGCAACCAATCGGCCAGATGAACTGGACTTAGAATTTGT-CCGCCCTGGACGTATTGACAGACGTGTGTATATTGGTTTACCAGATGCAAAGCAACGAGTGCAAATTTTTGGAGTTCACAGTGCTGGGAAACAGCTTTCCGAGGATATTGCCTTTGAGAAAGTAAATCACTTGCTTCATTACCCCTTTTTTTCCACTAATCCATTCATTCTTATTCATTACTGAGTCATTAAGTAATAAAAGCTACAAATGTAACATTTTTTTCAACCCAACAAAAGCACTACCCTTTAACTTGCCCAAAATCCAAACAACCCCAAACACCTGTCTAAGAACTAGTAAATTCGGCAACAGCCTTAGAGCGTGTTTGGTTTGACTTATTTTAGGTGCTTTTAAGATAAAATAGTTTTATAGCAGTTTTGGAGTGTTTGGATAAAATAAAAAAATGGTTTGGACTTGGGACTTCCATGTTGGATGTCTCAAGTTCGAAACCCCTTGCTAGCGAAAGAAAGGGGTTTGCCTTCTGGGTCGAGCTCGTCGCATCGGGCTTGCCTAGTGCTGGTTACCTCTCCTATGTAGTTTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGGACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATTAGAAAAAAAAAGTGCTTATAAGCACCTGTTTTAAGCCAAAATAACATAAATAACTTATGGCTTATAAGTCATAAGCCAAAAGCCAATCCAAACAGGCTCTTTGTCCTCTTAGTTCAGAAACATCATGTTTAGCCAACTCACCGGACAACAAAAGCCTAACAGCAGTCTGAATTTCCCTAGAAGTGATAGTAGGCTTCTTATTATACCTAGCCAATCTTGAAGACTCCTGAGCAAGCTTCTCAACTATATCATTGATGAAATTGTTCATGTTCCCCATAGTCTTGCTTGAAATATCAATATCTGGGTGAACTTGATTCAGCACCTTGAAAATGTAGATGTAAGTCTCAACAGTCAACACTCTTTTCATTGTCAGCACCACCAGCACCTGATTTCTTTGGTAACTTCTTCCCTGCCCTTGGATTCTTCTCTGCTGGTGCTTTTTCAGCCTTTCCTCCTCTGTTGCTGCTGGTTTCCTCTCTGCTGGATTTTTATCTGCTTTTTGTGCCAATGAAACAGAAATTCAGAATCTGAAAATGGGTTACTAAGAAAAGGGAAGTAAAAGATTCTTGGCTTGTGAAATGAGTTTGTCTTGGTGCTTCATTAGTTCTCATTGTTGGCTTGGGATCTCCTCTTCCAGTTGATTTGCTTGAATGTAAAATTACTTTCACGTTATATACAGCTTCTTTCAAGGGTTAGCAGCAACACTACTGCAGTGTAGTAACTGCACATGCCAAAAGCTAGTTGTTCCTTTCTTGTACTTAGTTGCTAGAAGACAATGATGTTCTTTTTGTTAGACTTAATGTATGCTCCATTTGGGCTCAGGTTTAGGAATTTGATTGTTGAACTGTATTCCTTGCACTTCTGCAGCTTGTCTTTCGTACAGTTGGATATTCTGGGGCAGACATAAGAAATCTAGTCAATGAAGCTGGAATAATGTCTGTAAGTTTGTTCTTTGTATTTTCCGTTGATATATAACGTCTCTACTCACTTTTGGAGCTTCATATTAGTTGACGGTTGACCTATTGTTTTCTTGACAAGTTCTGTTATCTTAAACAATGTATGTTATTGACAATTGACTTCAAATAATTAACATTGAGACTTGTAGAACACAACATACATTTTTTTCTTGTAAAAATGTATATTAGATTGCATATTTGAGATCATGTAATTAGCTTTTTGCTGTAACGGTAGACTTCACAGCATGATTTTCTTGGGAAAAAAAAAAGAAAATTTAATGGTGGATAGCGAGGAGTTTACCTTTTGGATCGAGCTCGTCGCATTGGGCCTGCCTAGTGCGGGTTAACTCTCTTGTGTGGTTTGCGAGTATTGCATAGGAGCAAGAGTTTTACCTTGTGTGCACCCAAAGAGTAGCGAGTGTAAGTTTCCCTTGACATCAAAAAATTAGGTGGTGGATAGGAAAACATAGAATATTTTAAGAGAAGTAAATGAGGCAAGCTTAGGTGGCTCCGACTGAAAGTTGTTGAGCAGATTCCTGGAAAGTAAACCAACGAGCTGTCACCACAAGTGCCTTTTAAAATCACCTTTCTTAATGATCAATTTATCTATAGCAGGGGAAAACACAAACCATAAAATTGATTAAAACATCTTCTCAGGCACCCTTATAACTTAAGTGCATGCATCGCCTAACCTCCACCTTAACTCCTCCATCACATACCAATATCAAACAGACACTGATAAATCCAAACTTCGACGACTGATTAAACTAATTAAAACTTAAAATATATGTGATATATGCTAACTACTGTCCTCATTAGGAATCATTATTATAAGATTAAGGCTCGGTTAATCCAAGTTGAAATAGGGTGTCTTTCCAGTTTCACTCTTTTTAAATAGGGTGTCTTATCACTTATGTATGGAGGGAAGATGTTTTCCTCAAGGACAATCATGTTTTCTGGCTTTCCATTTTCTTGAGAGTGGTAGCTTACATGCAGGTAAGAAAAGGACATTCTAAGATCAACCAGCAGGATATCGTCGATGTTTTGGACAAGCAATTGCT</genome_strand>
        <mrna_strand>GGCTGCACGAATCAATGAAATGTTTTCTGTTGCTAGGAGAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGCTTTTGTATTTATAGATGAGATTGATGCTATTGCTGGAAGGCATGCAAGAAAGGATCCACGCAGGAAGGCAACATTTGAGGCTCTGATTTCTCAGCTTGACGGGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAAAAAACTGGTGTTGATAGGTTTTCACTAAGACAAGCTGTCATATTCATCTGTGCAACCAATCGGCCAGATGAACTGGACTTAGAATTTGTCCCGCCCTGGACGTATTGACAGACGTGTGTATATTGGTTTACCAGATGCAAAGCAACGAGTGCAAATTTTTGGAGTTCACAGTGCTGGGAAACAGCTTTCCGAGGATATTGCCTTTGAGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCTTTCGTACAGTTGGATATTCTGGGGCAGACATAAGAAATCTAGTCAATGAAGCTGGAATAATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAAAAGGACATTCTAAGATCAACCAGCAGGATATCGTCGATGTTTTGGACAAGCAATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583936" ref_strand="+" ref_description="SGN-U583936 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157357899|emb|CAO64911.1| (e_value=3e-16) unnamed; (*ATH) AT1G79560.1 (e_value=8e-13) | Symbol: FTSH12 | encodes an FtsH protease that is localized to the chloroplast | chr1:29931687-29937899 FORWARD | Aliases: T8K14.2, T8K14_2, EMB1047, EMBRYO DEFECTIVE 1047, FTSH12; (*SWP) sp|Q9SAJ3|FTSHC_ARATH (e_value=6e-12) Cell division protease ftsH homolog 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12; ">
      <seq>gttacagcctgccatgttcgaagattttgtgaagcctttccaaataaacatggaggaggaaggaccattgcctcataatgaccgtttgagttatcaaccgctggacatttatcctgcgcccctccacagaagttaacatcaatggtgggtgtttgagttttctggtcagaccgacatcggaagttgcctagtagtgaatgttgaggtttagagacaatgtcctttttcacatcaactctgaccaaaacctttgcaaaccaacagaaaggctgcttagtagatagtaaggttgggttgcaaatgttccattttttattatttaggcacatttttgtttcttctttccttcttttgctctcttttcttttcccttaatttatttcatggtttaaatagagcaactttgtacaagaaagaccaatgagaatcgaaaatgtaaaatttggctatttatataagttaatgttaagtatatattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="+" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="53981" stop="55411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54281" g_stop="54338" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54339" i_stop="54689" i_length="351">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54690" g_stop="55112" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="481" r_length="423" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="+" ref_id="SGN-U583936" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54281" e_stop="54338"/>
          <exon e_start="54690" e_stop="55112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACAGCCTGCCATGTTCGAAGATTTTGTGAAGCCTTTCCAAATAAACATGGAGGAGGTAATATAATATTTTCAGATTCTCAATCTTCATATTTACTTTCAAGAGATAATGTGAAGTCTTTATAACAATACCATTCTCTTTAGAAACGTGAGAATAGGGATAATATAGAATGTGTACAATGCAACCCAGTAATATGTCTGCTGTTATTTTTGTTTTAAACATCCTGTTGCTTTGCATGACGGGGATGGGGCTCTCAAAGTAGATTGTACGAGGCTTGTCGCGTGCTTTTGCTTAATGATCTGAGTCAGGGGCAACCTTCTTCCTTGTGAATATTTTTAGCTCGCAATCTCATGCAGATTTTGATTTTCTCAATTGTACTGTGCCTATAAAAATGTTTTAAATTCTCAGGAAGGACCATTGCCTCATAATGACCGTTTGAGTTATCAACCGCTGGACATTTATCCTGCGCCCCTCCACAGAAGTTAACATCAATGGTGGTTGTTTGAGTTTTCTGGTCAGACCGACATCGGAAGTTGCCTAGTAGTGAATGTTGAGGTTTAGAGACAATGTCCTTTTTCACATCAACTCTGACCAAAACCTTTGCAAACCAACAGAAAGGCTGCTTAGTAGATAGTAAGGTTGGGTTGCAAATGTTCCATTTTTTATTATTTAGGCACATTTTTGTTTCTTCTTTCCTTCTTTTGCTCTCTTTTCTTTTCCCTTAATTTATTTCATGGTTTAAATAGAGCAACTTTGTACAAGAAAGACCAATGAGAATCGAAAATGTAAAATTTGGCTATTTATATAAGTTAATGTTAAGTATATATTCAT</genome_strand>
        <mrna_strand>GTTACAGCCTGCCATGTTCGAAGATTTTGTGAAGCCTTTCCAAATAAACATGGAGGAG...............................................................................................................................................................................................................................................................................................................................................................GAAGGACCATTGCCTCATAATGACCGTTTGAGTTATCAACCGCTGGACATTTATCCTGCGCCCCTCCACAGAAGTTAACATCAATGGTGGGTGTTTGAGTTTTCTGGTCAGACCGACATCGGAAGTTGCCTAGTAGTGAATGTTGAGGTTTAGAGACAATGTCCTTTTTCACATCAACTCTGACCAAAACCTTTGCAAACCAACAGAAAGGCTGCTTAGTAGATAGTAAGGTTGGGTTGCAAATGTTCCATTTTTTATTATTTAGGCACATTTTTGTTTCTTCTTTCCTTCTTTTGCTCTCTTTTCTTTTCCCTTAATTTATTTCATGGTTTAAATAGAGCAACTTTGTACAAGAAAGACCAATGAGAATCGAAAATGTAAAATTTGGCTATTTATATAAGTTAATGTTAAGTATATATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585712" ref_strand="+" ref_description="SGN-U585712 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|218199845|gb|EEC82272.1| (e_value=5e-47) hypothetical; (*ATH) AT4G32010.1 (e_value=2e-32)  Symbol: None | transcriptional factor B3 family protein, low similarity to FUSCA3 (Arabidopsis thaliana) GI:3582518, VIVIPAROUS1 protein (Triticum aestivum) GI:7801376; contains Pfam profile PF02362: B3 DNA binding domain | chr4:15479530-15485359 FO... ; ">
      <seq>cgaaaagttcctgacaatgttgaccttccatcgagatggacttgttcagacaactcatgcgaccccgagaggtctgtgtgctcagcagttcaagaattaacagcagatcatctgagggacctactacctcatattaataaagcttccaagaaaaggaaggcttctaaacaggaaatggacttggttgaaactctggatgggcttgatgcccttgctcatctagctatcctagaagagggagagacccttccagcatcaccacaggccacaactaagcatccacgtcatagacctgggtgtacatgcattgtctgcatccagccccctagtggaaaaggtcctaagcacaagcaatcatgtgattgtaacgtctgtaaatcagtaaagcgtcgtttcaaaacattgatgatgaagcgtgaaaaaaagttatcagagaaagaagcagaagctacttgtcaaaagctgcagccgcaatcagctgggcaattgcttgatgctgatgacattcaagaacctattgatgatgcagtgcattcaagccctcagcatgaagagctgaacattgaaggttctgttgatcccaattaccttaatgagaagaaatcttctgttgaggatcccaattaccttgatgagaagaaatcttcagttgatgacacaaattaccttagtgagaagatatcttctgttgatgaccccagctaccttaatgagaaggaatcttctgttgatgatcccaacatcctgaatgagaagaaatcttctgttgatgatcctaactgcctgaatgagaagaaatctgctgttgatgatcccaactacgtggatgagaggaaatcttctgttgatgatcccaattgccttaaggagaagaaatcttctgcttcaccatttaaaggtgaatttgacctgaatgctaagccagatagggacgacgagctttcaccaggctctgattctggtagcatgatgcgcatgatcaaacgtgctgctgagcaatatgtcaggcactgtgataatggaagttccgtgggtaaccaaagagatggagatggtgctggggagacaaatccgggtaattgtgttattgttagtggtagtcatcaagctgatgtagatcataataggcctttacccataagcgctgctgcatctttggcacctaatgaccagtaagttgctccctacatgaggcacctaaattagctgtgctatattaaaaaccagaggtactccgcagtgtatggaaatttgtacattttggctttgctggcgtcatgcattgtacatagatagacgtagcaagtagcaactgatgtaatctttctgcaatccacaggttgcattttgcaatggccgcgaggtgccttacatatttattatataaatgggtggaaaggtttttgggagtttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="-" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="71602" stop="68595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71302" g_stop="71232" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71231" i_stop="70364" i_length="868">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70363" g_stop="70293" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="142" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70292" i_stop="70166" i_length="127">
            <donor d_prob="0.918" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70165" g_stop="68909" g_length="1257"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="1399" r_length="1257" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="-" ref_id="SGN-U585712" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1399</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71302" e_stop="71232"/>
          <exon e_start="70363" e_stop="70293"/>
          <exon e_start="70165" e_stop="68909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAAGTTCCTGACAATGTTGACCTTCCATCGAGATGGACTTGTTCAGACAACTCATGCGACCCCGAGAGGTATGATGGAAATTCTTTAACCTACCTAAGATGCAGTTAAAATGTCAATAGAATACATGAAGGAAAGCGCACATGCTTTTGTTAGTGTAAATGCTGAAGTGGATTGCATTAAGCAATCTGGACAAGCCAAAACCTCTAACTTCAATAATCAAGCTTGTCAGTGGAAGAAAAGGTTGTACTGGTGAATTACTCCTCATGAAATGTGCTTCATAGGTAGGAGTAAGGTCTGCAACATTCTACTCTCCCCAGTCCTACTTGTGGGATTACACCGGAGATGTGGTTGTTGTTGTTGAAATGTGCTTCTGATATTAGATATTGAAAATCATTTTAAAAATTGTCCTGCAGACACAAATTTATCCTTTTTCTTTCCAAAGTCTAACTGAACCTTGCTATTTGGAATTGGCAACCTGATGAGGTTTTCTATGGTTGGTTTCTCCCCTTTTCTTTTAGCAGTTTGTCCCTTTAATCAACTCTGTAGCATTCTTCTTCTCTCTCCAATTTTCTATTCTTTCAGAAAGTTAACTTTGAACCACCTTCATCACCTGTGCCTGCATTATATGAGTTTCCATCATTAGAAAAAAAAAAACTTCGTCAGTTTCCATTTTCTACGATTCTCGTTTTCTTTAAGTTACATCTGGCTGTCTTTTGCTTTAATAGAAATAAACTAACGTCTGTTCATTTCCATCCTGATAAAAAAAAAAGTTTGTCTCCAAAATAGTATTGACAATTCCTGAATGATCTTTATCATAGATAGAAATACACAAAGTTATCAATCTTTTTTTAAAAAAAAGTATTGACAATTCCTGAAATTCAGTCAAGTATTCAATTGCAGTTTGAGTATTTGGGTTATGATCTTTCTTCTTTTTAGGTCTGTGTGCTCAGCAGTTCAAGAATTAACAGCAGATCATCTGAGGGACCTACTACCTCATATTAATAAAGGTAAAAGTGCTTGCTCGTGTAGGTCATAAATTTCTACACTATTGAACCGGTGCTTATGTGTCTGCCTCATCTTGACAATGAATTGCAAGTCCTTCAGGTTTACTGAAGTTATATGATTCTTTTGCAGCTTCCAAGAAAAGGAAGGCTTCTAAACAGGAAATGGACTTGGTTGAAACTCTGGATGGGCTTGATGCCCTTGCTCATCTAGCTATCCTAGAAGAGGGAGAGACCCTTCCAGCATCACCACAGGCCACAACTAAGCATCCACGTCATAGACCTGGGTGTACATGCATTGTCTGCATCCAGCCCCCTAGTGGAAAAGGTCCTAAGCACAAGCAATCATGTGATTGTAACGTCTGTAAATCAGTAAAGCGTCGTTTCAAAACATTGATGATGAAGCGTGAAAAAAAGTTATCAGAGAAAGAAGCAGAAGCTACTTGTCAAAAGCTGCAGCCGCAATCAGCTGGGCAATTGCTTGATGCTGATGACATTCAAGAACCTATTGATGATGCAGTGCATTCAAGCCCTCAGCATGAAGAGCTGAACATTGAAGGTTCTGTTGATCCCAATTACCTTAATGAGAAGAAATCTTCTGTTGAGGATCCCAATTACCTTGATGAGAAGAAATCTTCAGTTGATGACACAAATTACCTTAGTGAGAAGATATCTTCTGTTGATGACCCCAGCTACCTTAATGAGAAGGAATCTTCTGTTGATGATCCCAACATCCTGAATGAGAAGAAATCTTCTGTTGATGATCCTAACTGCCTGAATGAGAAGAAATCTGCTGTTGATGATCCCAACTACGTGGATGAGAGGAAATCTTCTGTTGATGATCCCAATTGCCTTAAGGAGAAGAAATCTTCTGCTTCACCATTTAAAGGTGAATTTGACCTGAATGCTAAGCCAGATAGGGACGACGAGCTTTCACCAGGCTCTGATTCTGGTAGCATGATGCGCATGATCAAACGTGCTGCTGAGCAATATGTCAGGCACTGTGATAATGGAAGTTCCGTGGGTAACCAAAGAGATGGAGATGGTGCTGGGGAGACAAATCCGGGTAATTGTGTTATTGTTAGTGGTAGTCATCAAGCTGATGTAGATCATAATAGGCCTTTACCCATAAGCGCTGCTGCATCTTTGGCACCTAATGACCAGTAAGTTGCTCCCTACATGAGGCACCTAAATTAGCTGTGCTATATTAAAAACCAGAGGTACTCCGCAGTGTATGGAAATTTGTACATTTTGGCTTTGCTGGCGTCATGCATTGTACATAGATAGACGTAGCAAGTAGCAACTGATGTAATCTTTCTGCAATCCACAGGTTGCATTTTGCAATGGCCGCGAGGTGCCTTACATATTTATTATATAAATGGCTGGAAAG</genome_strand>
        <mrna_strand>CGAAAAGTTCCTGACAATGTTGACCTTCCATCGAGATGGACTTGTTCAGACAACTCATGCGACCCCGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGTGCTCAGCAGTTCAAGAATTAACAGCAGATCATCTGAGGGACCTACTACCTCATATTAATAAAG...............................................................................................................................CTTCCAAGAAAAGGAAGGCTTCTAAACAGGAAATGGACTTGGTTGAAACTCTGGATGGGCTTGATGCCCTTGCTCATCTAGCTATCCTAGAAGAGGGAGAGACCCTTCCAGCATCACCACAGGCCACAACTAAGCATCCACGTCATAGACCTGGGTGTACATGCATTGTCTGCATCCAGCCCCCTAGTGGAAAAGGTCCTAAGCACAAGCAATCATGTGATTGTAACGTCTGTAAATCAGTAAAGCGTCGTTTCAAAACATTGATGATGAAGCGTGAAAAAAAGTTATCAGAGAAAGAAGCAGAAGCTACTTGTCAAAAGCTGCAGCCGCAATCAGCTGGGCAATTGCTTGATGCTGATGACATTCAAGAACCTATTGATGATGCAGTGCATTCAAGCCCTCAGCATGAAGAGCTGAACATTGAAGGTTCTGTTGATCCCAATTACCTTAATGAGAAGAAATCTTCTGTTGAGGATCCCAATTACCTTGATGAGAAGAAATCTTCAGTTGATGACACAAATTACCTTAGTGAGAAGATATCTTCTGTTGATGACCCCAGCTACCTTAATGAGAAGGAATCTTCTGTTGATGATCCCAACATCCTGAATGAGAAGAAATCTTCTGTTGATGATCCTAACTGCCTGAATGAGAAGAAATCTGCTGTTGATGATCCCAACTACGTGGATGAGAGGAAATCTTCTGTTGATGATCCCAATTGCCTTAAGGAGAAGAAATCTTCTGCTTCACCATTTAAAGGTGAATTTGACCTGAATGCTAAGCCAGATAGGGACGACGAGCTTTCACCAGGCTCTGATTCTGGTAGCATGATGCGCATGATCAAACGTGCTGCTGAGCAATATGTCAGGCACTGTGATAATGGAAGTTCCGTGGGTAACCAAAGAGATGGAGATGGTGCTGGGGAGACAAATCCGGGTAATTGTGTTATTGTTAGTGGTAGTCATCAAGCTGATGTAGATCATAATAGGCCTTTACCCATAAGCGCTGCTGCATCTTTGGCACCTAATGACCAGTAAGTTGCTCCCTACATGAGGCACCTAAATTAGCTGTGCTATATTAAAAACCAGAGGTACTCCGCAGTGTATGGAAATTTGTACATTTTGGCTTTGCTGGCGTCATGCATTGTACATAGATAGACGTAGCAAGTAGCAACTGATGTAATCTTTCTGCAATCCACAGGTTGCATTTTGCAATGGCCGCGAGGTGCCTTACATATTTATTATATAAATGGGTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602135" ref_strand="+" ref_description="SGN-U602135 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ctctctctctaaaatctttcagtctctgcaaattaaaccctcttttgctctctctaatggctaaaatttatcaatcactccgtcacttcattttctctctctagaatttgttcatctctctagggtttcagttttcactttcctttctttcgctatctcttacgagaattttccctgttgaaccaaaaaaacttttccttttcgttccctttttttttgtttggttttattcacaccgtttgtaagtgtttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0019I01-S1SF3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0019I01.3" temp_strand="-" temp_description="C02SLm0019I01.3  AC215472.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0019I01 sequenced_by:kribb upload_account_name:korea">
        <position start="80251" stop="79394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79951" g_stop="79694" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0019I01.3" gen_strand="-" ref_id="SGN-U602135" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0019I01.3" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79951" e_stop="79694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTAAAATCTTTCAGTCTCTGCAAATTAAACCCTCTTTTGCTCTCTCTAATGGCTAAAATTTATCAATCACTCCGTCACTTCATTTTCTCTCTCTAGAATTTGTTCATCTCTCTAGGGTTTCAGTTTTCACTTTCCTTTCTTTCGCTATCTCTAACGAGAATTTTCCCTGTTGAACCAAAAAAACTTTTCCTTTTCGTTCCTTTTTTTTTTGTTTGGTTTTATTCACACCGTTTGTAAGTGTTTTTTTTTT</genome_strand>
        <mrna_strand>CTCTCTCTCTAAAATCTTTCAGTCTCTGCAAATTAAACCCTCTTTTGCTCTCTCTAATGGCTAAAATTTATCAATCACTCCGTCACTTCATTTTCTCTCTCTAGAATTTGTTCATCTCTCTAGGGTTTCAGTTTTCACTTTCCTTTCTTTCGCTATCTCTTACGAGAATTTTCCCTGTTGAACCAAAAAAACTTTTCCTTTTCGTTCCCTTTTTTTTTGTTTGGTTTTATTCACACCGTTTGTAAGTGTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="801" PGL_stop="5257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="801" e_stop="1856"/>
            <exon e_start="1979" e_stop="2101"/>
            <exon e_start="2765" e_stop="3055"/>
            <exon e_start="4696" e_stop="5257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.409" acc_prob="0.546" e_score="0.999"/>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="801" e_stop="1856" e_length="1056"/>
          </exon>
          <intron i_serial="1" don_prob="0.409" acc_prob="0.546">
            <gDNA_intron_boundary i_start="1857" i_stop="1978" i_length="122"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1979" e_stop="2101" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="2102" i_stop="2764" i_length="663"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2765" e_stop="3055" e_length="291"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="3056" i_stop="4695" i_length="1640"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="4696" e_stop="5257" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="801" stop="1856"/>
              <exon start="1979" stop="2101"/>
              <exon start="2765" stop="3055"/>
              <exon start="4696" stop="5257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCACAATACTCTGCACGAATTTGTTGTCACTATCTTCATTCTTGATTTATTATACTGTAAGTAGTGCAATAATTTCCAGAAACATACTATTGTTTGATTCTTTCTTTGTTTTTGTGTTTTCGGTGTGATTGATGATAACTTTTCTACCATCTTCTTCGGTCTATGCGGATCTTGATAAATTTCTGGTGCCCCAGAAGTCAAAAGGGATATGGATATTTTTTGTATTTATTCAATTTGCTGTGTATTGGTTTGGTTTGGTTTTTTGTTTTTCAAGAAAACATTCTATTTTGATTCCTCAATTGTAAAATCTGTATTTTTAACTAAAAGTTCAATATGTACCTTGAATCTTGATTTAAAATCAAATTCTTGTTATATATCCGGTTCCGTAGAAGTCAAATGGATATGGGTGTTTTTTGTATTTATTGAATTTGCGATGTATTGGTTTGGGTTGTATTTTGTTTTTCAAGAAAACATCTTATTTTGATTCCCCCGAATGTAAAATCTGTATCTTTAACTAAAAATTCAACATGCCCCTTGAATCTTGATTTTAAATCAAATTGGTGGATAGATATCAAGCTCAAGTTTTCTCAAATTTGATATTCTGTTGAAGAGTTGTATGTTGGTAAATTTTGTGTGTGGTTCTCTGACCTTGATAAAATTGAGAATTGGTTTGCACGTTTAGTTGAAAAGTGCAGGCAGTTGAAAAATTGGTGAACACCAGTATAAAGGTCTTTGGTATTTGATTTGCAGGAGGAGCTTTGTGTTGTGTTCTTGCAAGGCTTGGTAAAATATGGACTTTGCTAGTATGGACCGTGCACAACTCACTATGGTGGGATCAGGATTTTCTGCTTTGCTTTCGATGCATTTCACGATACAGCTCTTGTCACAACACCTCTTCTTCTGGAAAAACCCAAAGGAGCAAAAGGCAATAATCATGATTATATGTATGGCTCCCCTTTATGCCATTGACTCGTTTGTGGGTTTGTTAGATATTCGTGGAAGCAAAACATTTTTCATGTTTCTAGACTCAGTTAAAGAATGCTATGAGGCTGTG : GCAATTGCCAAATTTTTGGCTTTGATGTATAGTTATTTGAATATATCCATCAGCAAAAACATTGTGCCTGATGAAATCAAGGGGAGGGAAATTCATCATTCCTTTCCGATGACTCTATTTCAG : CCTCGCACTGCTCACTTAGATCACCGGACACTGAAACTTCTCAAGCATTGGACATGGCAGTTTGTCATTATCCGTCCAGCATGCTCTATCTTGATGATCACGTTGCAGATTCTTGGGTTGTATCCGAATTGGCTCAGCTGGACGTTTACCATCATTCTCAATATTTCATTCTCAGTGGCCATGTACTCCTTGGTTGTTTTCTACCATGTTTTCTCAAAGGAACTGCAGCCACACAAACCACTTTCAAAGTTCATCTGCATTAAAGGGATAGTTTTCTTCAGCTTTTGGCAG : GGGTTGCTGGTTAAAATTCTAGTCTCGTGGGGAATTATCAAATCTCACCATTTTTGGTTGGATGTGGAGCACCTTCAGGAAGCCATTCAGAATGTTTTAATTTGTGTGGAGATGGTTTTCTTTTCTGTTATGCAGCAATATGCATACCACGTGGCTCCTTACAGTGGTGATGTCGAAGCAAAGTTGAAACTGAAAAAGGATGACTAAGTCGATGCACAAGACGTTGGTGTGAATAGACACTTTTCCTCTGTGATCTTGCATTTACCACCAGTCGCCGTGTGTAATGCAAGTTTTTATTGTTGTGTAACCTGTTGATACGGCTCAGGAAGGTCTTAAGATAACTAATTTTCGCGTGTGTTAGCAAAGAAGGAAATTTCTATCATTTCCTCTGATAACCAGTTTTTACTCTTTTGTGGTTAGACTTCTTGTAGTTATATCAGTAATTTTTCTTCATGAGAGGCTGGTGTCCCTGCCGGCACCTGCAACAAGCTTGATTGCGACTTTGTAAGTAATCATTTTCTTAATTATCTTGAGAATATCATGACTATGTGAATGCTCTAAT</gDNA_template>
            <first_frame> I  H  N  T  L  H  E  F  V  V  T  I  F  I  L  D  L  L  Y  C  K  *  C  N  N  F  Q  K  H  T  I  V  *  F  F  L  C  F  C  V  F  G  V  I  D  D  N  F  S  T  I  F  F  G  L  C  G  S  *  *  I  S  G  A  P  E  V  K  R  D  M  D  I  F  C  I  Y  S  I  C  C  V  L  V  W  F  G  F  L  F  F  K  K  T  F  Y  F  D  S  S  I  V  K  S  V  F  L  T  K  S  S  I  C  T  L  N  L  D  L  K  S  N  S  C  Y  I  S  G  S  V  E  V  K  W  I  W  V  F  F  V  F  I  E  F  A  M  Y  W  F  G  L  Y  F  V  F  Q  E  N  I  L  F  *  F  P  R  M  *  N  L  Y  L  *  L  K  I  Q  H  A  P  *  I  L  I  L  N  Q  I  G  G  *  I  S  S  S  S  F  L  K  F  D  I  L  L  K  S  C  M  L  V  N  F  V  C  G  S  L  T  L  I  K  L  R  I  G  L  H  V  *  L  K  S  A  G  S  *  K  I  G  E  H  Q  Y  K  G  L  W  Y  L  I  C  R  R  S  F  V  L  C  S  C  K  A  W  *  N  M  D  F  A  S  M  D  R  A  Q  L  T  M  V  G  S  G  F  S  A  L  L  S  M  H  F  T  I  Q  L  L  S  Q  H  L  F  F  W  K  N  P  K  E  Q  K  A  I  I  M  I  I  C  M  A  P  L  Y  A  I  D  S  F  V  G  L  L  D  I  R  G  S  K  T  F  F  M  F  L  D  S  V  K  E  C  Y  E  A  V  :  A  I  A  K  F  L  A  L  M  Y  S  Y  L  N  I  S  I  S  K  N  I  V  P  D  E  I  K  G  R  E  I  H  H  S  F  P  M  T  L  F  Q  :  P  R  T  A  H  L  D  H  R  T  L  K  L  L  K  H  W  T  W  Q  F  V  I  I  R  P  A  C  S  I  L  M  I  T  L  Q  I  L  G  L  Y  P  N  W  L  S  W  T  F  T  I  I  L  N  I  S  F  S  V  A  M  Y  S  L  V  V  F  Y  H  V  F  S  K  E  L  Q  P  H  K  P  L  S  K  F  I  C  I  K  G  I  V  F  F  S  F  W  Q  :  G  L  L  V  K  I  L  V  S  W  G  I  I  K  S  H  H  F  W  L  D  V  E  H  L  Q  E  A  I  Q  N  V  L  I  C  V  E  M  V  F  F  S  V  M  Q  Q  Y  A  Y  H  V  A  P  Y  S  G  D  V  E  A  K  L  K  L  K  K  D  D  *  V  D  A  Q  D  V  G  V  N  R  H  F  S  S  V  I  L  H  L  P  P  V  A  V  C  N  A  S  F  Y  C  C  V  T  C  *  Y  G  S  G  R  S  *  D  N  *  F  S  R  V  L  A  K  K  E  I  S  I  I  S  S  D  N  Q  F  L  L  F  C  G  *  T  S  C  S  Y  I  S  N  F  S  S  *  E  A  G  V  P  A  G  T  C  N  K  L  D  C  D  F  V  S  N  H  F  L  N  Y  L  E  N  I  M  T  M  *  M  L  *  </first_frame>
            <second_frame>  F  T  I  L  C  T  N  L  L  S  L  S  S  F  L  I  Y  Y  T  V  S  S  A  I  I  S  R  N  I  L  L  F  D  S  F  F  V  F  V  F  S  V  *  L  M  I  T  F  L  P  S  S  S  V  Y  A  D  L  D  K  F  L  V  P  Q  K  S  K  G  I  W  I  F  F  V  F  I  Q  F  A  V  Y  W  F  G  L  V  F  C  F  S  R  K  H  S  I  L  I  P  Q  L  *  N  L  Y  F  *  L  K  V  Q  Y  V  P  *  I  L  I  *  N  Q  I  L  V  I  Y  P  V  P  *  K  S  N  G  Y  G  C  F  L  Y  L  L  N  L  R  C  I  G  L  G  C  I  L  F  F  K  K  T  S  Y  F  D  S  P  E  C  K  I  C  I  F  N  *  K  F  N  M  P  L  E  S  *  F  *  I  K  L  V  D  R  Y  Q  A  Q  V  F  S  N  L  I  F  C  *  R  V  V  C  W  *  I  L  C  V  V  L  *  P  *  *  N  *  E  L  V  C  T  F  S  *  K  V  Q  A  V  E  K  L  V  N  T  S  I  K  V  F  G  I  *  F  A  G  G  A  L  C  C  V  L  A  R  L  G  K  I  W  T  L  L  V  W  T  V  H  N  S  L  W  W  D  Q  D  F  L  L  C  F  R  C  I  S  R  Y  S  S  C  H  N  T  S  S  S  G  K  T  Q  R  S  K  R  Q  *  S  *  L  Y  V  W  L  P  F  M  P  L  T  R  L  W  V  C  *  I  F  V  E  A  K  H  F  S  C  F  *  T  Q  L  K  N  A  M  R  L  W :   Q  L  P  N  F  W  L  *  C  I  V  I  *  I  Y  P  S  A  K  T  L  C  L  M  K  S  R  G  G  K  F  I  I  P  F  R  *  L  Y  F  S :   L  A  L  L  T  *  I  T  G  H  *  N  F  S  S  I  G  H  G  S  L  S  L  S  V  Q  H  A  L  S  *  *  S  R  C  R  F  L  G  C  I  R  I  G  S  A  G  R  L  P  S  F  S  I  F  H  S  Q  W  P  C  T  P  W  L  F  S  T  M  F  S  Q  R  N  C  S  H  T  N  H  F  Q  S  S  S  A  L  K  G  *  F  S  S  A  F  G  R :   G  C  W  L  K  F  *  S  R  G  E  L  S  N  L  T  I  F  G  W  M  W  S  T  F  R  K  P  F  R  M  F  *  F  V  W  R  W  F  S  F  L  L  C  S  N  M  H  T  T  W  L  L  T  V  V  M  S  K  Q  S  *  N  *  K  R  M  T  K  S  M  H  K  T  L  V  *  I  D  T  F  P  L  *  S  C  I  Y  H  Q  S  P  C  V  M  Q  V  F  I  V  V  *  P  V  D  T  A  Q  E  G  L  K  I  T  N  F  R  V  C  *  Q  R  R  K  F  L  S  F  P  L  I  T  S  F  Y  S  F  V  V  R  L  L  V  V  I  S  V  I  F  L  H  E  R  L  V  S  L  P  A  P  A  T  S  L  I  A  T  L  *  V  I  I  F  L  I  I  L  R  I  S  *  L  C  E  C  S  N </second_frame>
            <third_frame>   S  Q  Y  S  A  R  I  C  C  H  Y  L  H  S  *  F  I  I  L  *  V  V  Q  *  F  P  E  T  Y  Y  C  L  I  L  S  L  F  L  C  F  R  C  D  *  *  *  L  F  Y  H  L  L  R  S  M  R  I  L  I  N  F  W  C  P  R  S  Q  K  G  Y  G  Y  F  L  Y  L  F  N  L  L  C  I  G  L  V  W  F  F  V  F  Q  E  N  I  L  F  *  F  L  N  C  K  I  C  I  F  N  *  K  F  N  M  Y  L  E  S  *  F  K  I  K  F  L  L  Y  I  R  F  R  R  S  Q  M  D  M  G  V  F  C  I  Y  *  I  C  D  V  L  V  W  V  V  F  C  F  S  R  K  H  L  I  L  I  P  P  N  V  K  S  V  S  L  T  K  N  S  T  C  P  L  N  L  D  F  K  S  N  W  W  I  D  I  K  L  K  F  S  Q  I  *  Y  S  V  E  E  L  Y  V  G  K  F  C  V  W  F  S  D  L  D  K  I  E  N  W  F  A  R  L  V  E  K  C  R  Q  L  K  N  W  *  T  P  V  *  R  S  L  V  F  D  L  Q  E  E  L  C  V  V  F  L  Q  G  L  V  K  Y  G  L  C  *  Y  G  P  C  T  T  H  Y  G  G  I  R  I  F  C  F  A  F  D  A  F  H  D  T  A  L  V  T  T  P  L  L  L  E  K  P  K  G  A  K  G  N  N  H  D  Y  M  Y  G  S  P  L  C  H  *  L  V  C  G  F  V  R  Y  S  W  K  Q  N  I  F  H  V  S  R  L  S  *  R  M  L  *  G  C   : G  N  C  Q  I  F  G  F  D  V  *  L  F  E  Y  I  H  Q  Q  K  H  C  A  *  *  N  Q  G  E  G  N  S  S  F  L  S  D  D  S  I  S   : A  S  H  C  S  L  R  S  P  D  T  E  T  S  Q  A  L  D  M  A  V  C  H  Y  P  S  S  M  L  Y  L  D  D  H  V  A  D  S  W  V  V  S  E  L  A  Q  L  D  V  Y  H  H  S  Q  Y  F  I  L  S  G  H  V  L  L  G  C  F  L  P  C  F  L  K  G  T  A  A  T  Q  T  T  F  K  V  H  L  H  *  R  D  S  F  L  Q  L  L  A   : G  V  A  G  *  N  S  S  L  V  G  N  Y  Q  I  S  P  F  L  V  G  C  G  A  P  S  G  S  H  S  E  C  F  N  L  C  G  D  G  F  L  F  C  Y  A  A  I  C  I  P  R  G  S  L  Q  W  *  C  R  S  K  V  E  T  E  K  G  *  L  S  R  C  T  R  R  W  C  E  *  T  L  F  L  C  D  L  A  F  T  T  S  R  R  V  *  C  K  F  L  L  L  C  N  L  L  I  R  L  R  K  V  L  R  *  L  I  F  A  C  V  S  K  E  G  N  F  Y  H  F  L  *  *  P  V  F  T  L  L  W  L  D  F  L  *  L  Y  Q  *  F  F  F  M  R  G  W  C  P  C  R  H  L  Q  Q  A  *  L  R  L  C  K  *  S  F  S  *  L  S  *  E  Y  H  D  Y  V  N  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1590" stop="1856"/>
                    <exon start="1979" stop="2101"/>
                    <exon start="2765" stop="3055"/>
                    <exon start="4696" stop="4902"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMDFASMDRAQLTMVGSGFSALLSMHFTIQLLSQHLFFWKNPKEQKAIIMIICMAPLYAIDSFVGLLDIRGSKTFFMFLDSVKECYEAVAIAKFLALMYSYLNISISKNIVPDEIKGREIHHSFPMTLFQPRTAHLDHRTLKLLKHWTWQFVIIRPACSILMITLQILGLYPNWLSWTFTIILNISFSVAMYSLVVFYHVFSKELQPHKPLSKFICIKGIVFFSFWQGLLVKILVSWGIIKSHHFWLDVEHLQEAIQNVLICVEMVFFSVMQQYAYHVAPYSGDVEAKLKLKKDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="981" stop="1286"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISGAPEVKRDMDIFCIYSICCVLVWFGFLFFKKTFYFDSSIVKSVFLTKSSICTLNLDLKSNSCYISGSVEVKWIWVFFVFIEFAMYWFGLYFVFQENILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9502" PGL_stop="6128"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9502" e_stop="8653"/>
            <exon e_start="6350" e_stop="6128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.971" e_score="0.998"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="9502" e_stop="8653" e_length="850"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.971">
            <gDNA_intron_boundary i_start="8652" i_stop="6351" i_length="2302"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="6350" e_stop="6128" e_length="223"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9502" stop="8653"/>
              <exon start="6350" stop="6128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571428" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTTTTTCCCTAAGCATGGTCATTTGATTTTGTCAGCTGGGATGGATACAAAGGTGAAAATTTGGGATGTTTACAATTCCGGTAAATGTATGAGGACTTACATGGGGCATACAAAGGCAGTGAGGGATATTTGGTTTAGCAATGACGGGACGAAGTTTTTGACAGCTGGATATGATAAGTACATTAAGTATTGGGATACAGAAACAGGACAAGTAATTCAAACGTTCACGACGGGTAAGATACCCTATGTGGTGAGGCTTAATCCTGATGAAGATAAGCAGAATGTACTTTTGGCTGGTATGAGTGATAAGAAGATTGTGCAGTGGGATATAAACAGTGGACAGATTACACAAGAGTACGATCAACATCTGGGGGCAGTTAATACAATTACCTTTGTGGATAATAACAGAAGGTTTGTGACCTCTAGTGATGATAAATCACTACGTGTTTGGGAATATGGTATTCCGGTTGTTATCAAGTATATAAGTGAACCCCATATGCATTCCATGCCATCTATTTCGCCCCATCCAAATGGGAATTGGATTGCAGCACAAAGTTTGGATAACCAGATTCTTATTTACAGTACGCGAGAGAGATTTCAGCTGAATAAAAAGAAAAGATTTGCTGGACACATTGTCGCTGGTTATGCCTGCCAGGTCAATTTCTCACCTGATGGACGGTTTGTCTTCTCAGGAGATGGTGAAGGCAGATGCTGGTTTTGGGATTGGAAATCGTGTAAGGTCTTCAGAACTCTCAAGTGTCATGATGGGGTCTGTATTGGTGCAGAGTGGCATCCTCTGGAACAAAGTAAAGTTGCTACTTGTGGCTGGGATGGTTTGATCAAATACTG : GGACTAGTTTTTGAGCAGCCATTTTTGTCTCCATTTACTTTGAGGACAACTTGTTCAACATGGGTTGGCTAGAGGAATCAAGACTCTTATATGCAGTGGGTGGTCAACTCATTTGGGACACGTTGGCTGGAAAAACCAAGCTATGAATGCATTTTTTAGTCAATGCTAGTCTTTACCTCAGTAAAACAGGTTTTCTCAGATGGTTTTCTTTGGTTGAGGTTGT</gDNA_template>
            <first_frame> G  F  S  L  S  M  V  I  *  F  C  Q  L  G  W  I  Q  R  *  K  F  G  M  F  T  I  P  V  N  V  *  G  L  T  W  G  I  Q  R  Q  *  G  I  F  G  L  A  M  T  G  R  S  F  *  Q  L  D  M  I  S  T  L  S  I  G  I  Q  K  Q  D  K  *  F  K  R  S  R  R  V  R  Y  P  M  W  *  G  L  I  L  M  K  I  S  R  M  Y  F  W  L  V  *  V  I  R  R  L  C  S  G  I  *  T  V  D  R  L  H  K  S  T  I  N  I  W  G  Q  L  I  Q  L  P  L  W  I  I  T  E  G  L  *  P  L  V  M  I  N  H  Y  V  F  G  N  M  V  F  R  L  L  S  S  I  *  V  N  P  I  C  I  P  C  H  L  F  R  P  I  Q  M  G  I  G  L  Q  H  K  V  W  I  T  R  F  L  F  T  V  R  E  R  D  F  S  *  I  K  R  K  D  L  L  D  T  L  S  L  V  M  P  A  R  S  I  S  H  L  M  D  G  L  S  S  Q  E  M  V  K  A  D  A  G  F  G  I  G  N  R  V  R  S  S  E  L  S  S  V  M  M  G  S  V  L  V  Q  S  G  I  L  W  N  K  V  K  L  L  L  V  A  G  M  V  *  S  N  T   : G  T  S  F  *  A  A  I  F  V  S  I  Y  F  E  D  N  L  F  N  M  G  W  L  E  E  S  R  L  L  Y  A  V  G  G  Q  L  I  W  D  T  L  A  G  K  T  K  L  *  M  H  F  L  V  N  A  S  L  Y  L  S  K  T  G  F  L  R  W  F  S  L  V  E  V   </first_frame>
            <second_frame>  V  F  P  *  A  W  S  F  D  F  V  S  W  D  G  Y  K  G  E  N  L  G  C  L  Q  F  R  *  M  Y  E  D  L  H  G  A  Y  K  G  S  E  G  Y  L  V  *  Q  *  R  D  E  V  F  D  S  W  I  *  *  V  H  *  V  L  G  Y  R  N  R  T  S  N  S  N  V  H  D  G  *  D  T  L  C  G  E  A  *  S  *  *  R  *  A  E  C  T  F  G  W  Y  E  *  *  E  D  C  A  V  G  Y  K  Q  W  T  D  Y  T  R  V  R  S  T  S  G  G  S  *  Y  N  Y  L  C  G  *  *  Q  K  V  C  D  L  *  *  *  *  I  T  T  C  L  G  I  W  Y  S  G  C  Y  Q  V  Y  K  *  T  P  Y  A  F  H  A  I  Y  F  A  P  S  K  W  E  L  D  C  S  T  K  F  G  *  P  D  S  Y  L  Q  Y  A  R  E  I  S  A  E  *  K  E  K  I  C  W  T  H  C  R  W  L  C  L  P  G  Q  F  L  T  *  W  T  V  C  L  L  R  R  W  *  R  Q  M  L  V  L  G  L  E  I  V  *  G  L  Q  N  S  Q  V  S  *  W  G  L  Y  W  C  R  V  A  S  S  G  T  K  *  S  C  Y  L  W  L  G  W  F  D  Q  I  L  :  G  L  V  F  E  Q  P  F  L  S  P  F  T  L  R  T  T  C  S  T  W  V  G  *  R  N  Q  D  S  Y  M  Q  W  V  V  N  S  F  G  T  R  W  L  E  K  P  S  Y  E  C  I  F  *  S  M  L  V  F  T  S  V  K  Q  V  F  S  D  G  F  L  W  L  R  L  </second_frame>
            <third_frame>   F  F  P  K  H  G  H  L  I  L  S  A  G  M  D  T  K  V  K  I  W  D  V  Y  N  S  G  K  C  M  R  T  Y  M  G  H  T  K  A  V  R  D  I  W  F  S  N  D  G  T  K  F  L  T  A  G  Y  D  K  Y  I  K  Y  W  D  T  E  T  G  Q  V  I  Q  T  F  T  T  G  K  I  P  Y  V  V  R  L  N  P  D  E  D  K  Q  N  V  L  L  A  G  M  S  D  K  K  I  V  Q  W  D  I  N  S  G  Q  I  T  Q  E  Y  D  Q  H  L  G  A  V  N  T  I  T  F  V  D  N  N  R  R  F  V  T  S  S  D  D  K  S  L  R  V  W  E  Y  G  I  P  V  V  I  K  Y  I  S  E  P  H  M  H  S  M  P  S  I  S  P  H  P  N  G  N  W  I  A  A  Q  S  L  D  N  Q  I  L  I  Y  S  T  R  E  R  F  Q  L  N  K  K  K  R  F  A  G  H  I  V  A  G  Y  A  C  Q  V  N  F  S  P  D  G  R  F  V  F  S  G  D  G  E  G  R  C  W  F  W  D  W  K  S  C  K  V  F  R  T  L  K  C  H  D  G  V  C  I  G  A  E  W  H  P  L  E  Q  S  K  V  A  T  C  G  W  D  G  L  I  K  Y  W :   D  *  F  L  S  S  H  F  C  L  H  L  L  *  G  Q  L  V  Q  H  G  L  A  R  G  I  K  T  L  I  C  S  G  W  S  T  H  L  G  H  V  G  W  K  N  Q  A  M  N  A  F  F  S  Q  C  *  S  L  P  Q  *  N  R  F  S  Q  M  V  F  F  G  *  G  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9500" stop="8653"/>
                    <exon start="6350" stop="6344"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFPKHGHLILSAGMDTKVKIWDVYNSGKCMRTYMGHTKAVRDIWFSNDGTKFLTAGYDKYIKYWDTETGQVIQTFTTGKIPYVVRLNPDEDKQNVLLAGMSDKKIVQWDINSGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISPHPNGNWIAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVFSGDGEGRCWFWDWKSCKVFRTLKCHDGVCIGAEWHPLEQSKVATCGWDGLIKYWD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10420" PGL_stop="9622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10420" e_stop="9622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="10420" e_stop="9622" e_length="799"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10420" stop="9622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585855" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTAGGTTTCTAATCAAAATATAAAGCTTTCGCCATTTTTCATAGTTTGTGCGTATCCCATGGATCTTTTACAATCTTCATACGAGGATGAATCGCCGGATTCTTCCCCAATACGCATGCTTCCTTCTAAATCCGCCGCCCCTAAAGTCGACGACACCATGCTAGCCCTAACAGTCGCCGGCGAAGCTGCCAGAGCTCAATCCAAACCCCTTGACCCGACCCAGCACGTTGTTGGATTCAACCCGACGTACGAACAACTATGGGCACCAATTTGTGGTCCAGCTCACCCGTACGCAAAGGACGGGTTAGCTCAAGGACTCAGAAATCACAAGTTAGGGTTCGTAGAGGACGCGTCTATTGAGCCCTTTGTATTCGATGAGCAGTACAATACTTTTCAGAAGTATGGGTACGCTGTTGATCCCTCTGAAAATAGCTACATCGGTGATTTGGAAAAAATGAAGGAATGTGATGCAATTTCTGTGTATAACATACCACAGCATGAACAGAAGAAGAGGAAGTTAGAGAAGAAGAAGGAAAAAATGGAGGAGGAGGGTGATGAGCAGGATGTGGATATGACGGAAGTTGAAAATCCGTCCACCGACACATGGTTGATGAAGAACAGGAAGAGTCCATGGGCTGGAAAGAAAGAAGGGTTGCAAGTGGAATTATCTGAGGAGCAGAAAAAATATGCTGAAGAGTATGCTAAGAAGAAGGGTGAAGAAAGAGGTGGTGATAAAGATAAGGCGGAGCCTATGGTTGAAAAGAGCACATTTCATGGTAAAGAGGAAAAGGATTA</gDNA_template>
            <first_frame> K  I  R  F  L  I  K  I  *  S  F  R  H  F  S  *  F  V  R  I  P  W  I  F  Y  N  L  H  T  R  M  N  R  R  I  L  P  Q  Y  A  C  F  L  L  N  P  P  P  L  K  S  T  T  P  C  *  P  *  Q  S  P  A  K  L  P  E  L  N  P  N  P  L  T  R  P  S  T  L  L  D  S  T  R  R  T  N  N  Y  G  H  Q  F  V  V  Q  L  T  R  T  Q  R  T  G  *  L  K  D  S  E  I  T  S  *  G  S  *  R  T  R  L  L  S  P  L  Y  S  M  S  S  T  I  L  F  R  S  M  G  T  L  L  I  P  L  K  I  A  T  S  V  I  W  K  K  *  R  N  V  M  Q  F  L  C  I  T  Y  H  S  M  N  R  R  R  G  S  *  R  R  R  R  K  K  W  R  R  R  V  M  S  R  M  W  I  *  R  K  L  K  I  R  P  P  T  H  G  *  *  R  T  G  R  V  H  G  L  E  R  K  K  G  C  K  W  N  Y  L  R  S  R  K  N  M  L  K  S  M  L  R  R  R  V  K  K  E  V  V  I  K  I  R  R  S  L  W  L  K  R  A  H  F  M  V  K  R  K  R  I  </first_frame>
            <second_frame>  K  L  G  F  *  S  K  Y  K  A  F  A  I  F  H  S  L  C  V  S  H  G  S  F  T  I  F  I  R  G  *  I  A  G  F  F  P  N  T  H  A  S  F  *  I  R  R  P  *  S  R  R  H  H  A  S  P  N  S  R  R  R  S  C  Q  S  S  I  Q  T  P  *  P  D  P  A  R  C  W  I  Q  P  D  V  R  T  T  M  G  T  N  L  W  S  S  S  P  V  R  K  G  R  V  S  S  R  T  Q  K  S  Q  V  R  V  R  R  G  R  V  Y  *  A  L  C  I  R  *  A  V  Q  Y  F  S  E  V  W  V  R  C  *  S  L  *  K  *  L  H  R  *  F  G  K  N  E  G  M  *  C  N  F  C  V  *  H  T  T  A  *  T  E  E  E  E  V  R  E  E  E  G  K  N  G  G  G  G  *  *  A  G  C  G  Y  D  G  S  *  K  S  V  H  R  H  M  V  D  E  E  Q  E  E  S  M  G  W  K  E  R  R  V  A  S  G  I  I  *  G  A  E  K  I  C  *  R  V  C  *  E  E  G  *  R  K  R  W  *  *  R  *  G  G  A  Y  G  *  K  E  H  I  S  W  *  R  G  K  G  L </second_frame>
            <third_frame>   N  *  V  S  N  Q  N  I  K  L  S  P  F  F  I  V  C  A  Y  P  M  D  L  L  Q  S  S  Y  E  D  E  S  P  D  S  S  P  I  R  M  L  P  S  K  S  A  A  P  K  V  D  D  T  M  L  A  L  T  V  A  G  E  A  A  R  A  Q  S  K  P  L  D  P  T  Q  H  V  V  G  F  N  P  T  Y  E  Q  L  W  A  P  I  C  G  P  A  H  P  Y  A  K  D  G  L  A  Q  G  L  R  N  H  K  L  G  F  V  E  D  A  S  I  E  P  F  V  F  D  E  Q  Y  N  T  F  Q  K  Y  G  Y  A  V  D  P  S  E  N  S  Y  I  G  D  L  E  K  M  K  E  C  D  A  I  S  V  Y  N  I  P  Q  H  E  Q  K  K  R  K  L  E  K  K  K  E  K  M  E  E  E  G  D  E  Q  D  V  D  M  T  E  V  E  N  P  S  T  D  T  W  L  M  K  N  R  K  S  P  W  A  G  K  K  E  G  L  Q  V  E  L  S  E  E  Q  K  K  Y  A  E  E  Y  A  K  K  K  G  E  E  R  G  G  D  K  D  K  A  E  P  M  V  E  K  S  T  F  H  G  K  E  E  K  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10412" stop="9624"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSNQNIKLSPFFIVCAYPMDLLQSSYEDESPDSSPIRMLPSKSAAPKVDDTMLALTVAGEAARAQSKPLDPTQHVVGFNPTYEQLWAPICGPAHPYAKDGLAQGLRNHKLGFVEDASIEPFVFDEQYNTFQKYGYAVDPSENSYIGDLEKMKECDAISVYNIPQHEQKKRKLEKKKEKMEEEGDEQDVDMTEVENPSTDTWLMKNRKSPWAGKKEGLQVELSEEQKKYAEEYAKKKGEERGGDKDKAEPMVEKSTFHGKEEKD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="22937" PGL_stop="20846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22937" e_stop="22649"/>
            <exon e_start="21413" e_stop="21308"/>
            <exon e_start="21208" e_stop="20846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.393" e_score="0.997"/>
          <exon-intron don_prob="0.629" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="22937" e_stop="22649" e_length="289"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.393">
            <gDNA_intron_boundary i_start="22648" i_stop="21414" i_length="1235"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21413" e_stop="21308" e_length="106"/>
          </exon>
          <intron i_serial="2" don_prob="0.629" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21307" i_stop="21209" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="0.923">
            <gDNA_exon_boundary e_start="21208" e_stop="20846" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22937" stop="22649"/>
              <exon start="21413" stop="21308"/>
              <exon start="21208" stop="20846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCTCTATAGTAAAATCATATTTGATATCGAATCTTCTTGTATTTTTTTTAAATTCTATCGGCAATTTCTTGATACATCATATCCAATATCTCCTTGCCATCGGGAAAATTAAAAATTAGCAGCTAAAATAAGATCGTACAAAACCGATTGGTGCACATTCACGAAAGCCTTGTTAACCCTAGGAAATAGATGTGGTTCGAGCTGTCGCTGAGAATTTTAGTGTGAAGGGGATTGAGAAGCTTTTCTTTTTGGTATATTACCCCTCAAATTTCAGAGCTCATATTCCAG : TCAGGTTTAACAAGGCTGACCAACTTTAATGTGGTGTTCTTATGGGTTTACGGATTTGGATTTTTGAGTTGTATTATGAAATTGTTGGAGTTCTGAGTGGTTACAG : TTGTGAGACCGTGTTGCACTAGCATCTTCCAGTTACCATTATCTTTCTCCAGCATGTGAGCTTTCATTAAGGGTTCGTTCAAGGAATAAGCAGTATAATACCGACTTAGAGTGTATCAAGAGAAAAGAAGAGAAGAGTCTGGCAGTTTTAAGACCCATAATGCTGAAACTCTTTGATTCTCATTGTCACCTCCAAGATCCAAGGATCTTTAATATGGTCCCAAAAATTATCAAAACCACGACTGAAACAGGAGTTGTCCATTTTGCGGTCAATGGCGTGTCAGAGAAAGATTGGCGTTTGGTAAAGGAAATGAGTGAACGCTACCCTTCTATTGTTCCAAATTTTGGGCTCCATCCCTGGTTT</gDNA_template>
            <first_frame> S  S  I  V  K  S  Y  L  I  S  N  L  L  V  F  F  L  N  S  I  G  N  F  L  I  H  H  I  Q  Y  L  L  A  I  G  K  I  K  N  *  Q  L  K  *  D  R  T  K  P  I  G  A  H  S  R  K  P  C  *  P  *  E  I  D  V  V  R  A  V  A  E  N  F  S  V  K  G  I  E  K  L  F  F  L  V  Y  Y  P  S  N  F  R  A  H  I  P   : V  R  F  N  K  A  D  Q  L  *  C  G  V  L  M  G  L  R  I  W  I  F  E  L  Y  Y  E  I  V  G  V  L  S  G  Y  S :   C  E  T  V  L  H  *  H  L  P  V  T  I  I  F  L  Q  H  V  S  F  H  *  G  F  V  Q  G  I  S  S  I  I  P  T  *  S  V  S  R  E  K  K  R  R  V  W  Q  F  *  D  P  *  C  *  N  S  L  I  L  I  V  T  S  K  I  Q  G  S  L  I  W  S  Q  K  L  S  K  P  R  L  K  Q  E  L  S  I  L  R  S  M  A  C  Q  R  K  I  G  V  W  *  R  K  *  V  N  A  T  L  L  L  F  Q  I  L  G  S  I  P  G   </first_frame>
            <second_frame>  P  L  *  *  N  H  I  *  Y  R  I  F  L  Y  F  F  *  I  L  S  A  I  S  *  Y  I  I  S  N  I  S  L  P  S  G  K  L  K  I  S  S  *  N  K  I  V  Q  N  R  L  V  H  I  H  E  S  L  V  N  P  R  K  *  M  W  F  E  L  S  L  R  I  L  V  *  R  G  L  R  S  F  S  F  W  Y  I  T  P  Q  I  S  E  L  I  F  Q  :  S  G  L  T  R  L  T  N  F  N  V  V  F  L  W  V  Y  G  F  G  F  L  S  C  I  M  K  L  L  E  F  *  V  V  T   : V  V  R  P  C  C  T  S  I  F  Q  L  P  L  S  F  S  S  M  *  A  F  I  K  G  S  F  K  E  *  A  V  *  Y  R  L  R  V  Y  Q  E  K  R  R  E  E  S  G  S  F  K  T  H  N  A  E  T  L  *  F  S  L  S  P  P  R  S  K  D  L  *  Y  G  P  K  N  Y  Q  N  H  D  *  N  R  S  C  P  F  C  G  Q  W  R  V  R  E  R  L  A  F  G  K  G  N  E  *  T  L  P  F  Y  C  S  K  F  W  A  P  S  L  V  </second_frame>
            <third_frame>   L  Y  S  K  I  I  F  D  I  E  S  S  C  I  F  F  K  F  Y  R  Q  F  L  D  T  S  Y  P  I  S  P  C  H  R  E  N  *  K  L  A  A  K  I  R  S  Y  K  T  D  W  C  T  F  T  K  A  L  L  T  L  G  N  R  C  G  S  S  C  R  *  E  F  *  C  E  G  D  *  E  A  F  L  F  G  I  L  P  L  K  F  Q  S  S  Y  S  S :   Q  V  *  Q  G  *  P  T  L  M  W  C  S  Y  G  F  T  D  L  D  F  *  V  V  L  *  N  C  W  S  S  E  W  L  Q  :  L  *  D  R  V  A  L  A  S  S  S  Y  H  Y  L  S  P  A  C  E  L  S  L  R  V  R  S  R  N  K  Q  Y  N  T  D  L  E  C  I  K  R  K  E  E  K  S  L  A  V  L  R  P  I  M  L  K  L  F  D  S  H  C  H  L  Q  D  P  R  I  F  N  M  V  P  K  I  I  K  T  T  T  E  T  G  V  V  H  F  A  V  N  G  V  S  E  K  D  W  R  L  V  K  E  M  S  E  R  Y  P  S  I  V  P  N  F  G  L  H  P  W  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21202" stop="20846"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DRVALASSSYHYLSPACELSLRVRSRNKQYNTDLECIKRKEEKSLAVLRPIMLKLFDSHCHLQDPRIFNMVPKIIKTTTETGVVHFAVNGVSEKDWRLVKEMSERYPSIVPNFGLHPWF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22652" e_stop="22112"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="22652" e_stop="22112" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22652" stop="22112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGGTACTTAATTGTTCATTCCAAGAAAATTTCTTAAATTTCTTGTAATTGGAGTTAATGGGTGTTTGAAAAATTCAATCTTTATTACTCAGACATATGTAACAGATAGGAAGATGGTGATGGGGATAAGAAAGCCTTTGTTGCGTAGCTTTTTGCAAAATTATGTCTTTGGAGGATGGTGTTTGAGAAGTTGTAAACACAGCTTTAAGCTTCCACTTAAACCCTAAATAAGAGGGAAATTGAGACTAGCTGATTTGCTTAACGTGATTTTCAAGATTAACAATACTACAACAACAAAAACATACTAATACACTGGTGAGGGTAGGATGCATGCAAACCTCACCCTACGTAGAGAGACAGTTTATGATAGATCCTTGAAACTAGTGATGAACTGATGATAAATAGAGTGAATGTATGACTTATGTTCTCTGTTTAGTAATCCTTAGATATCCGTGAAACTCTTCTGCCACAAATGTGTGTCTTTGTTAGTAACATAAATAAATAAATACAAAAAAATGGGAGCTGCATCTAGTGACATTT</gDNA_template>
            <first_frame> P  G  T  *  L  F  I  P  R  K  F  L  K  F  L  V  I  G  V  N  G  C  L  K  N  S  I  F  I  T  Q  T  Y  V  T  D  R  K  M  V  M  G  I  R  K  P  L  L  R  S  F  L  Q  N  Y  V  F  G  G  W  C  L  R  S  C  K  H  S  F  K  L  P  L  K  P  *  I  R  G  K  L  R  L  A  D  L  L  N  V  I  F  K  I  N  N  T  T  T  T  K  T  Y  *  Y  T  G  E  G  R  M  H  A  N  L  T  L  R  R  E  T  V  Y  D  R  S  L  K  L  V  M  N  *  *  *  I  E  *  M  Y  D  L  C  S  L  F  S  N  P  *  I  S  V  K  L  F  C  H  K  C  V  S  L  L  V  T  *  I  N  K  Y  K  K  M  G  A  A  S  S  D  I  </first_frame>
            <second_frame>  Q  V  L  N  C  S  F  Q  E  N  F  L  N  F  L  *  L  E  L  M  G  V  *  K  I  Q  S  L  L  L  R  H  M  *  Q  I  G  R  W  *  W  G  *  E  S  L  C  C  V  A  F  C  K  I  M  S  L  E  D  G  V  *  E  V  V  N  T  A  L  S  F  H  L  N  P  K  *  E  G  N  *  D  *  L  I  C  L  T  *  F  S  R  L  T  I  L  Q  Q  Q  K  H  T  N  T  L  V  R  V  G  C  M  Q  T  S  P  Y  V  E  R  Q  F  M  I  D  P  *  N  *  *  *  T  D  D  K  *  S  E  C  M  T  Y  V  L  C  L  V  I  L  R  Y  P  *  N  S  S  A  T  N  V  C  L  C  *  *  H  K  *  I  N  T  K  K  W  E  L  H  L  V  T  F </second_frame>
            <third_frame>   R  Y  L  I  V  H  S  K  K  I  S  *  I  S  C  N  W  S  *  W  V  F  E  K  F  N  L  Y  Y  S  D  I  C  N  R  *  E  D  G  D  G  D  K  K  A  F  V  A  *  L  F  A  K  L  C  L  W  R  M  V  F  E  K  L  *  T  Q  L  *  A  S  T  *  T  L  N  K  R  E  I  E  T  S  *  F  A  *  R  D  F  Q  D  *  Q  Y  Y  N  N  K  N  I  L  I  H  W  *  G  *  D  A  C  K  P  H  P  T  *  R  D  S  L  *  *  I  L  E  T  S  D  E  L  M  I  N  R  V  N  V  *  L  M  F  S  V  *  *  S  L  D  I  R  E  T  L  L  P  Q  M  C  V  F  V  S  N  I  N  K  *  I  Q  K  N  G  S  C  I  *  *  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22640" stop="22425"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFIPRKFLKFLVIGVNGCLKNSIFITQTYVTDRKMVMGIRKPLLRSFLQNYVFGGWCLRSCKHSFKLPLKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25085" PGL_stop="37811"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28085" e_stop="28694"/>
            <exon e_start="28804" e_stop="28862"/>
            <exon e_start="33642" e_stop="33723"/>
            <exon e_start="36539" e_stop="36602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="28085" e_stop="28694" e_length="610"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28695" i_stop="28803" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28804" e_stop="28862" e_length="59"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28863" i_stop="33641" i_length="4779"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33642" e_stop="33723" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33724" i_stop="36538" i_length="2815"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36539" e_stop="36602" e_length="64"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28085" stop="28619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28291" stop="28694"/>
              <exon start="28804" stop="28862"/>
              <exon start="33642" stop="33723"/>
              <exon start="36539" stop="36602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583534" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAGTTTCAGCCTCATCTTGTCTGGAGTCTTGATCAGGTTGGTTTCCTTGATTGCTTTCTGCCGTACAACACTTGGTGGTGGTTGCATCTAGCCATGTATCATGAAGCTGATGGTAATGGCAAGGACTTTTTTTGGATTATTGACATTCAGGCGGTATTCAAAATCCAACTATTTAAAATTAGATTTTTTTTAAGAGAAAGGTAAGAGTAGTATTATGAAGTCTCCAGCACAAAGACTATGCTAGGAACAATATCTACTGTTCAAAAAGCAAAACAAAAGGTAAAACATGAACGACACTACAAGTGGACTGCAATTTAGTGGGTATTAGATTGTAAGTTTGTTGGTTGATATTTGTTACCCTTAGTGCAACTTTGTTCTGCAAAAATCTACCTCCGTTTCCCTGATTGACTGGTACAACTCTATGAAGTTTGTGAAGAAAATCTAGGAGGACTAGAACTATGACAATTGGAGGATGTTTTCTACAGAATATTTTGATCTGTTCGTGGATTCTGGTAATAGCTGCTCTTTGTGAAGGTTAATAGTTTGATGATTGTATGATAGTCCAATACTGGAAAAAAATGTGAACACAATCTTGTCACTTGACATAG : GTTAAAAGGAACATTCAAGACCAGACATATCAGCATATAGATGCTCGATCCAAAGCTAG : GTTTGATGGTGTTGCACCAGAGCCTCGAAAAGGAATTAACAGTGGACATGTACCCGGGAGCAAGTGTATTCCTTTTCCACAG : ATGTTGGATGGCTCACAGACACTCTTATCCCGTGAAGAGCTCGAGAAAAAATTTGGTCAAGAAG</gDNA_template>
            <first_frame> P  S  F  S  L  I  L  S  G  V  L  I  R  L  V  S  L  I  A  F  C  R  T  T  L  G  G  G  C  I  *  P  C  I  M  K  L  M  V  M  A  R  T  F  F  G  L  L  T  F  R  R  Y  S  K  S  N  Y  L  K  L  D  F  F  *  E  K  G  K  S  S  I  M  K  S  P  A  Q  R  L  C  *  E  Q  Y  L  L  F  K  K  Q  N  K  R  *  N  M  N  D  T  T  S  G  L  Q  F  S  G  Y  *  I  V  S  L  L  V  D  I  C  Y  P  *  C  N  F  V  L  Q  K  S  T  S  V  S  L  I  D  W  Y  N  S  M  K  F  V  K  K  I  *  E  D  *  N  Y  D  N  W  R  M  F  S  T  E  Y  F  D  L  F  V  D  S  G  N  S  C  S  L  *  R  L  I  V  *  *  L  Y  D  S  P  I  L  E  K  N  V  N  T  I  L  S  L  D  I   : G  *  K  E  H  S  R  P  D  I  S  A  Y  R  C  S  I  Q  S  *  :  V  *  W  C  C  T  R  A  S  K  R  N  *  Q  W  T  C  T  R  E  Q  V  Y  S  F  S  T   : D  V  G  W  L  T  D  T  L  I  P  *  R  A  R  E  K  I  W  S  R   </first_frame>
            <second_frame>  Q  V  S  A  S  S  C  L  E  S  *  S  G  W  F  P  *  L  L  S  A  V  Q  H  L  V  V  V  A  S  S  H  V  S  *  S  *  W  *  W  Q  G  L  F  L  D  Y  *  H  S  G  G  I  Q  N  P  T  I  *  N  *  I  F  F  K  R  K  V  R  V  V  L  *  S  L  Q  H  K  D  Y  A  R  N  N  I  Y  C  S  K  S  K  T  K  G  K  T  *  T  T  L  Q  V  D  C  N  L  V  G  I  R  L  *  V  C  W  L  I  F  V  T  L  S  A  T  L  F  C  K  N  L  P  P  F  P  *  L  T  G  T  T  L  *  S  L  *  R  K  S  R  R  T  R  T  M  T  I  G  G  C  F  L  Q  N  I  L  I  C  S  W  I  L  V  I  A  A  L  C  E  G  *  *  F  D  D  C  M  I  V  Q  Y  W  K  K  M  *  T  Q  S  C  H  L  T  *  :  V  K  R  N  I  Q  D  Q  T  Y  Q  H  I  D  A  R  S  K  A  R :   F  D  G  V  A  P  E  P  R  K  G  I  N  S  G  H  V  P  G  S  K  C  I  P  F  P  Q  :  M  L  D  G  S  Q  T  L  L  S  R  E  E  L  E  K  K  F  G  Q  E  </second_frame>
            <third_frame>   K  F  Q  P  H  L  V  W  S  L  D  Q  V  G  F  L  D  C  F  L  P  Y  N  T  W  W  W  L  H  L  A  M  Y  H  E  A  D  G  N  G  K  D  F  F  W  I  I  D  I  Q  A  V  F  K  I  Q  L  F  K  I  R  F  F  L  R  E  R  *  E  *  Y  Y  E  V  S  S  T  K  T  M  L  G  T  I  S  T  V  Q  K  A  K  Q  K  V  K  H  E  R  H  Y  K  W  T  A  I  *  W  V  L  D  C  K  F  V  G  *  Y  L  L  P  L  V  Q  L  C  S  A  K  I  Y  L  R  F  P  D  *  L  V  Q  L  Y  E  V  C  E  E  N  L  G  G  L  E  L  *  Q  L  E  D  V  F  Y  R  I  F  *  S  V  R  G  F  W  *  *  L  L  F  V  K  V  N  S  L  M  I  V  *  *  S  N  T  G  K  K  C  E  H  N  L  V  T  *  H  R :   L  K  G  T  F  K  T  R  H  I  S  I  *  M  L  D  P  K  L   : G  L  M  V  L  H  Q  S  L  E  K  E  L  T  V  D  M  Y  P  G  A  S  V  F  L  F  H  R :   C  W  M  A  H  R  H  S  Y  P  V  K  S  S  R  K  N  L  V  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28804" stop="28862"/>
                    <exon start="33642" stop="33723"/>
                    <exon start="36539" stop="36601"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKRNIQDQTYQHIDARSKARFDGVAPEPRKGINSGHVPGSKCIPFPQMLDGSQTLLSREELEKKFGQE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28087" stop="28290"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFQPHLVWSLDQVGFLDCFLPYNTWWWLHLAMYHEADGNGKDFFWIIDIQAVFKIQLFKIRFFLRER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32283" e_stop="32968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="32283" e_stop="32968" e_length="686"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32283" stop="32968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTGTCCAAACTTCCAGCCTACTGTTAACTCCATTGCGTGTCTGGTCAATCAGTACTATGTCATTTGCCAATAACATTCACAATGGCACCTTTCCTTGGATATGACGTGTCAACTCATCCAACACCAACAACACAAATAGAAACAGGCTTAGAGCGGATCTCTGGTGCAACCCCATTATGACTTAGAAGTGTTCTAAGTCTTCTTCCAGTGTTCTTACCGGCTTGGCTATTGTACATGTTCTGAATCACTCTACTGTATGCCACCGATACACTTCTAACCTCCAAACACCTCCATAGAACCTCTCTTGGGACTTCATCATAAGTCTTTTCTAGGTCAATGAACACCACAGGTATGTCCTTATCCAAATGAGCCCATTAACTCTACAAAATGCAAAACCTCAACTTTTTCATGTAAGAAACTAAGATGCCTATGATGCCAAGTATAATCAGAATTTTTTACTATACTCTTCCAGATGTCACAGCTTGCGGACCCAGTTAAGAGCCATTTGATTGCTTGATATGCATTGACATGTATGTGCATAAGATTTAGAAAGAAAAACCACTTCTCTTTATATTTTAAGAATATTACTAGTTTCGTTCTTTGTGTGATGTCAAGGAGCAATTCTCACATTAACTTCTTTGTAGGATTTCTTCCCTTTGTGGTGTCAGTTCCTTGTTTACGAAT</gDNA_template>
            <first_frame> S  C  P  N  F  Q  P  T  V  N  S  I  A  C  L  V  N  Q  Y  Y  V  I  C  Q  *  H  S  Q  W  H  L  S  L  D  M  T  C  Q  L  I  Q  H  Q  Q  H  K  *  K  Q  A  *  S  G  S  L  V  Q  P  H  Y  D  L  E  V  F  *  V  F  F  Q  C  S  Y  R  L  G  Y  C  T  C  S  E  S  L  Y  C  M  P  P  I  H  F  *  P  P  N  T  S  I  E  P  L  L  G  L  H  H  K  S  F  L  G  Q  *  T  P  Q  V  C  P  Y  P  N  E  P  I  N  S  T  K  C  K  T  S  T  F  S  C  K  K  L  R  C  L  *  C  Q  V  *  S  E  F  F  T  I  L  F  Q  M  S  Q  L  A  D  P  V  K  S  H  L  I  A  *  Y  A  L  T  C  M  C  I  R  F  R  K  K  N  H  F  S  L  Y  F  K  N  I  T  S  F  V  L  C  V  M  S  R  S  N  S  H  I  N  F  F  V  G  F  L  P  F  V  V  S  V  P  C  L  R   </first_frame>
            <second_frame>  R  V  Q  T  S  S  L  L  L  T  P  L  R  V  W  S  I  S  T  M  S  F  A  N  N  I  H  N  G  T  F  P  W  I  *  R  V  N  S  S  N  T  N  N  T  N  R  N  R  L  R  A  D  L  W  C  N  P  I  M  T  *  K  C  S  K  S  S  S  S  V  L  T  G  L  A  I  V  H  V  L  N  H  S  T  V  C  H  R  Y  T  S  N  L  Q  T  P  P  *  N  L  S  W  D  F  I  I  S  L  F  *  V  N  E  H  H  R  Y  V  L  I  Q  M  S  P  L  T  L  Q  N  A  K  P  Q  L  F  H  V  R  N  *  D  A  Y  D  A  K  Y  N  Q  N  F  L  L  Y  S  S  R  C  H  S  L  R  T  Q  L  R  A  I  *  L  L  D  M  H  *  H  V  C  A  *  D  L  E  R  K  T  T  S  L  Y  I  L  R  I  L  L  V  S  F  F  V  *  C  Q  G  A  I  L  T  L  T  S  L  *  D  F  F  P  L  W  C  Q  F  L  V  Y  E  </second_frame>
            <third_frame>   V  S  K  L  P  A  Y  C  *  L  H  C  V  S  G  Q  S  V  L  C  H  L  P  I  T  F  T  M  A  P  F  L  G  Y  D  V  S  T  H  P  T  P  T  T  Q  I  E  T  G  L  E  R  I  S  G  A  T  P  L  *  L  R  S  V  L  S  L  L  P  V  F  L  P  A  W  L  L  Y  M  F  *  I  T  L  L  Y  A  T  D  T  L  L  T  S  K  H  L  H  R  T  S  L  G  T  S  S  *  V  F  S  R  S  M  N  T  T  G  M  S  L  S  K  *  A  H  *  L  Y  K  M  Q  N  L  N  F  F  M  *  E  T  K  M  P  M  M  P  S  I  I  R  I  F  Y  Y  T  L  P  D  V  T  A  C  G  P  S  *  E  P  F  D  C  L  I  C  I  D  M  Y  V  H  K  I  *  K  E  K  P  L  L  F  I  F  *  E  Y  Y  *  F  R  S  L  C  D  V  K  E  Q  F  S  H  *  L  L  C  R  I  S  S  L  C  G  V  S  S  L  F  T  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0019I01.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="25212" e_stop="25538"/>
            <exon e_start="25800" e_stop="25987"/>
            <exon e_start="26308" e_stop="26367"/>
            <exon e_start="26553" e_stop="26615"/>
            <exon e_start="26861" e_stop="26985"/>
            <exon e_start="27067" e_stop="27223"/>
            <exon e_start="28063" e_stop="28122"/>
            <exon e_start="28804" e_stop="28862"/>
            <exon e_start="33642" e_stop="33723"/>
            <exon e_start="36539" e_stop="36602"/>
            <exon e_start="37108" e_stop="37175"/>
            <exon e_start="37308" e_stop="37811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.849" acc_prob="0.728" e_score="0.939"/>
          <exon-intron don_prob="0.957" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.786" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="25212" e_stop="25538" e_length="327"/>
          </exon>
          <intron i_serial="1" don_prob="0.849" acc_prob="0.728">
            <gDNA_intron_boundary i_start="25539" i_stop="25799" i_length="261"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25800" e_stop="25987" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.981">
            <gDNA_intron_boundary i_start="25988" i_stop="26307" i_length="320"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26308" e_stop="26367" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.786">
            <gDNA_intron_boundary i_start="26368" i_stop="26552" i_length="185"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26553" e_stop="26615" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="26616" i_stop="26860" i_length="245"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26861" e_stop="26985" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.953">
            <gDNA_intron_boundary i_start="26986" i_stop="27066" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27067" e_stop="27223" e_length="157"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="27224" i_stop="28062" i_length="839"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="28063" e_stop="28122" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28123" i_stop="28803" i_length="681"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28804" e_stop="28862" e_length="59"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28863" i_stop="33641" i_length="4779"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="33642" e_stop="33723" e_length="82"/>
          </exon>
          <intron i_serial="9" don_prob="0.940" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33724" i_stop="36538" i_length="2815"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="36539" e_stop="36602" e_length="64"/>
          </exon>
          <intron i_serial="10" don_prob="0.978" acc_prob="0.945">
            <gDNA_intron_boundary i_start="36603" i_stop="37107" i_length="505"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="37108" e_stop="37175" e_length="68"/>
          </exon>
          <intron i_serial="11" don_prob="0.923" acc_prob="0.961">
            <gDNA_intron_boundary i_start="37176" i_stop="37307" i_length="132"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="37308" e_stop="37811" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25212" stop="25538"/>
              <exon start="25800" stop="25987"/>
              <exon start="26308" stop="26367"/>
              <exon start="26553" stop="26615"/>
              <exon start="26861" stop="26985"/>
              <exon start="27067" stop="27223"/>
              <exon start="28063" stop="28122"/>
              <exon start="28804" stop="28862"/>
              <exon start="33642" stop="33723"/>
              <exon start="36539" stop="36602"/>
              <exon start="37108" stop="37175"/>
              <exon start="37308" stop="37811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583533" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCATTTTGATTTTGATTTGCATTTTTCTTCAATTATTTGAAACCAGATTTTACTGAAGTTGCAGATTTTGATTTTGTTGGATATTTTTGTTTCTCAATGCACAGTTCATTTGTTCTTGCTATCTCTCTTCTTACTATAAAAAATTTGTTACTTGTATACTTTCATGGCTTATCAAAGATTTAACTAACAATTTGATTGTTTGATTTTGACTTTGACACTGAGTTTAAGAAAACAAAGAGATTTTTGAATGTTGTGGGATCTTGTGGTTATGTGGGAAGTTCCAAAAAGGAAAATTGAAACTACACAAACAAATACGAATGGAGGG : AGGAAACCATTTCGCTCGCTAGCAGCTCCAACTTACTAATCTACAAAGTTAAGGGTTATTTTACTCGTTGTATGGCTTCCTCAATGGTTGGGGCACAACCATCATTCTCAACACTAGCAATATCAACCAACGAACCTGTTGTTTCAGTTGACTGGCTCCATGCAAACATCAGAGACCCCGACTTAAAG : GTGTTAGATGCATCTTGGTACATGCCAGATGAGCAGAGAAATCCACTCCAGGAGTATCAG : GTCGCTTGCATTCCTGGAGCACTATTCTTTGATATAGACGGAATAACTGATCGGACTACAAAT : TTGCCACATATGTTGCCGTCTGAAGAAGCATTTGCAGCTGCTGTGTCTGCTCTTGGTATCAAGAACAAAGATGGGGTTGTTATATACGATGGCAAGGGCATTTTCAGTGCTGCCCGTGTTTGGTG : GATGTTTCGAGCTTTTGGACATGACAAAGTTTGGGTTTTGGATGGTGGCTTGCCAAGATGGCGTGCTTCAGGTTATGATGTCGAGTCACCTGGTGATGCCATTCTGAAAGCTAGTGTTGCCACTGAGGCAATTGAGAAAGTATACCAAGGACAGATG : GTTGGACCTTCTACCTTCCAGACCAAGTTTCAGCCTCATCTTGTCTGGAGTCTTGATCAG : GTTAAAAGGAACATTCAAGACCAGACATATCAGCATATAGATGCTCGATCCAAAGCTAG : GTTTGATGGTGTTGCACCAGAGCCTCGAAAAGGAATTAACAGTGGACATGTACCCGGGAGCAAGTGTATTCCTTTTCCACAG : ATGTTGGATGGCTCACAGACACTCTTATCCCGTGAAGAGCTCGAGAAAAAATTTGGTCAAGAAG : GTATCTCTTTGGACAAGCCTATAGTTGCCTCTTGTGGCACAGGTGTAACTGCTTGCGTACTTGTCTTG : GGCCTCCATCGACTGGGGAAGACTGACATTCCAGTCTATGATGGTTCATGGACAGAATGGGCAACACAGCCAGATACACCTCTCTGCACATCTGAAAGATGAAGACGTTTGTATGGCCTGCCTAGTTTTTATGGGTGAGCAATGATGATTGTGAATCTAGATCTGGTTCCTTTTCTTAATGGTTAGTGCAACAACTTACATTGTATTGTTGAATGATAACAACGGAAAAATTTCTTCTCTGTTGTACAAAATGCCTTAATTTTACCTTCATTATATTTTTGGTTAGTGCAACAACTTCCATTAACTATACTTTGTACTAAAAAACACTCTTATGCTTGGATAAGTGAACTTAGAAAGGCCCCTGAAATCAAATGTATTCATGCGTTGTCCAGTTGGAGTTTATATTTGATGTGTCATTGAACATAAAACTACGCTATGCGTGATTATAAATATTTAGCGAAATAGATATTTGTATTTATACATATAATCATTTTTGGAACTTAT</gDNA_template>
            <first_frame> I  H  F  D  F  D  L  H  F  S  S  I  I  *  N  Q  I  L  L  K  L  Q  I  L  I  L  L  D  I  F  V  S  Q  C  T  V  H  L  F  L  L  S  L  F  L  L  *  K  I  C  Y  L  Y  T  F  M  A  Y  Q  R  F  N  *  Q  F  D  C  L  I  L  T  L  T  L  S  L  R  K  Q  R  D  F  *  M  L  W  D  L  V  V  M  W  E  V  P  K  R  K  I  E  T  T  Q  T  N  T  N  G  G  :  R  K  P  F  R  S  L  A  A  P  T  Y  *  S  T  K  L  R  V  I  L  L  V  V  W  L  P  Q  W  L  G  H  N  H  H  S  Q  H  *  Q  Y  Q  P  T  N  L  L  F  Q  L  T  G  S  M  Q  T  S  E  T  P  T  *  R :   C  *  M  H  L  G  T  C  Q  M  S  R  E  I  H  S  R  S  I  R :   S  L  A  F  L  E  H  Y  S  L  I  *  T  E  *  L  I  G  L  Q  I :   C  H  I  C  C  R  L  K  K  H  L  Q  L  L  C  L  L  L  V  S  R  T  K  M  G  L  L  Y  T  M  A  R  A  F  S  V  L  P  V  F  G   : G  C  F  E  L  L  D  M  T  K  F  G  F  W  M  V  A  C  Q  D  G  V  L  Q  V  M  M  S  S  H  L  V  M  P  F  *  K  L  V  L  P  L  R  Q  L  R  K  Y  T  K  D  R  W :   L  D  L  L  P  S  R  P  S  F  S  L  I  L  S  G  V  L  I  R :   L  K  G  T  F  K  T  R  H  I  S  I  *  M  L  D  P  K  L   : G  L  M  V  L  H  Q  S  L  E  K  E  L  T  V  D  M  Y  P  G  A  S  V  F  L  F  H  R :   C  W  M  A  H  R  H  S  Y  P  V  K  S  S  R  K  N  L  V  K  K  :  V  S  L  W  T  S  L  *  L  P  L  V  A  Q  V  *  L  L  A  Y  L  S  W :   A  S  I  D  W  G  R  L  T  F  Q  S  M  M  V  H  G  Q  N  G  Q  H  S  Q  I  H  L  S  A  H  L  K  D  E  D  V  C  M  A  C  L  V  F  M  G  E  Q  *  *  L  *  I  *  I  W  F  L  F  L  M  V  S  A  T  T  Y  I  V  L  L  N  D  N  N  G  K  I  S  S  L  L  Y  K  M  P  *  F  Y  L  H  Y  I  F  G  *  C  N  N  F  H  *  L  Y  F  V  L  K  N  T  L  M  L  G  *  V  N  L  E  R  P  L  K  S  N  V  F  M  R  C  P  V  G  V  Y  I  *  C  V  I  E  H  K  T  T  L  C  V  I  I  N  I  *  R  N  R  Y  L  Y  L  Y  I  *  S  F  L  E  L   </first_frame>
            <second_frame>  F  I  L  I  L  I  C  I  F  L  Q  L  F  E  T  R  F  Y  *  S  C  R  F  *  F  C  W  I  F  L  F  L  N  A  Q  F  I  C  S  C  Y  L  S  S  Y  Y  K  K  F  V  T  C  I  L  S  W  L  I  K  D  L  T  N  N  L  I  V  *  F  *  L  *  H  *  V  *  E  N  K  E  I  F  E  C  C  G  I  L  W  L  C  G  K  F  Q  K  G  K  L  K  L  H  K  Q  I  R  M  E  G :   G  N  H  F  A  R  *  Q  L  Q  L  T  N  L  Q  S  *  G  L  F  Y  S  L  Y  G  F  L  N  G  W  G  T  T  I  I  L  N  T  S  N  I  N  Q  R  T  C  C  F  S  *  L  A  P  C  K  H  Q  R  P  R  L  K   : G  V  R  C  I  L  V  H  A  R  *  A  E  K  S  T  P  G  V  S   : G  R  L  H  S  W  S  T  I  L  *  Y  R  R  N  N  *  S  D  Y  K   : F  A  T  Y  V  A  V  *  R  S  I  C  S  C  C  V  C  S  W  Y  Q  E  Q  R  W  G  C  Y  I  R  W  Q  G  H  F  Q  C  C  P  C  L  V  :  D  V  S  S  F  W  T  *  Q  S  L  G  F  G  W  W  L  A  K  M  A  C  F  R  L  *  C  R  V  T  W  *  C  H  S  E  S  *  C  C  H  *  G  N  *  E  S  I  P  R  T  D   : G  W  T  F  Y  L  P  D  Q  V  S  A  S  S  C  L  E  S  *  S   : G  *  K  E  H  S  R  P  D  I  S  A  Y  R  C  S  I  Q  S  *  :  V  *  W  C  C  T  R  A  S  K  R  N  *  Q  W  T  C  T  R  E  Q  V  Y  S  F  S  T   : D  V  G  W  L  T  D  T  L  I  P  *  R  A  R  E  K  I  W  S  R  R :   Y  L  F  G  Q  A  Y  S  C  L  L  W  H  R  C  N  C  L  R  T  C  L   : G  P  P  S  T  G  E  D  *  H  S  S  L  *  W  F  M  D  R  M  G  N  T  A  R  Y  T  S  L  H  I  *  K  M  K  T  F  V  W  P  A  *  F  L  W  V  S  N  D  D  C  E  S  R  S  G  S  F  S  *  W  L  V  Q  Q  L  T  L  Y  C  *  M  I  T  T  E  K  F  L  L  C  C  T  K  C  L  N  F  T  F  I  I  F  L  V  S  A  T  T  S  I  N  Y  T  L  Y  *  K  T  L  L  C  L  D  K  *  T  *  K  G  P  *  N  Q  M  Y  S  C  V  V  Q  L  E  F  I  F  D  V  S  L  N  I  K  L  R  Y  A  *  L  *  I  F  S  E  I  D  I  C  I  Y  T  Y  N  H  F  W  N  L  </second_frame>
            <third_frame>   S  F  *  F  *  F  A  F  F  F  N  Y  L  K  P  D  F  T  E  V  A  D  F  D  F  V  G  Y  F  C  F  S  M  H  S  S  F  V  L  A  I  S  L  L  T  I  K  N  L  L  L  V  Y  F  H  G  L  S  K  I  *  L  T  I  *  L  F  D  F  D  F  D  T  E  F  K  K  T  K  R  F  L  N  V  V  G  S  C  G  Y  V  G  S  S  K  K  E  N  *  N  Y  T  N  K  Y  E  W  R   : E  E  T  I  S  L  A  S  S  S  N  L  L  I  Y  K  V  K  G  Y  F  T  R  C  M  A  S  S  M  V  G  A  Q  P  S  F  S  T  L  A  I  S  T  N  E  P  V  V  S  V  D  W  L  H  A  N  I  R  D  P  D  L  K  :  V  L  D  A  S  W  Y  M  P  D  E  Q  R  N  P  L  Q  E  Y  Q  :  V  A  C  I  P  G  A  L  F  F  D  I  D  G  I  T  D  R  T  T  N  :  L  P  H  M  L  P  S  E  E  A  F  A  A  A  V  S  A  L  G  I  K  N  K  D  G  V  V  I  Y  D  G  K  G  I  F  S  A  A  R  V  W  W :   M  F  R  A  F  G  H  D  K  V  W  V  L  D  G  G  L  P  R  W  R  A  S  G  Y  D  V  E  S  P  G  D  A  I  L  K  A  S  V  A  T  E  A  I  E  K  V  Y  Q  G  Q  M  :  V  G  P  S  T  F  Q  T  K  F  Q  P  H  L  V  W  S  L  D  Q  :  V  K  R  N  I  Q  D  Q  T  Y  Q  H  I  D  A  R  S  K  A  R :   F  D  G  V  A  P  E  P  R  K  G  I  N  S  G  H  V  P  G  S  K  C  I  P  F  P  Q  :  M  L  D  G  S  Q  T  L  L  S  R  E  E  L  E  K  K  F  G  Q  E   : G  I  S  L  D  K  P  I  V  A  S  C  G  T  G  V  T  A  C  V  L  V  L  :  G  L  H  R  L  G  K  T  D  I  P  V  Y  D  G  S  W  T  E  W  A  T  Q  P  D  T  P  L  C  T  S  E  R  *  R  R  L  Y  G  L  P  S  F  Y  G  *  A  M  M  I  V  N  L  D  L  V  P  F  L  N  G  *  C  N  N  L  H  C  I  V  E  *  *  Q  R  K  N  F  F  S  V  V  Q  N  A  L  I  L  P  S  L  Y  F  W  L  V  Q  Q  L  P  L  T  I  L  C  T  K  K  H  S  Y  A  W  I  S  E  L  R  K  A  P  E  I  K  C  I  H  A  L  S  S  W  S  L  Y  L  M  C  H  *  T  *  N  Y  A  M  R  D  Y  K  Y  L  A  K  *  I  F  V  F  I  H  I  I  I  F  G  T  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25511" stop="25538"/>
                    <exon start="25800" stop="25987"/>
                    <exon start="26308" stop="26367"/>
                    <exon start="26553" stop="26615"/>
                    <exon start="26861" stop="26985"/>
                    <exon start="27067" stop="27223"/>
                    <exon start="28063" stop="28122"/>
                    <exon start="28804" stop="28862"/>
                    <exon start="33642" stop="33723"/>
                    <exon start="36539" stop="36602"/>
                    <exon start="37108" stop="37175"/>
                    <exon start="37308" stop="37409"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYTNKYEWREETISLASSSNLLIYKVKGYFTRCMASSMVGAQPSFSTLAISTNEPVVSVDWLHANIRDPDLKVLDASWYMPDEQRNPLQEYQVACIPGALFFDIDGITDRTTNLPHMLPSEEAFAAAVSALGIKNKDGVVIYDGKGIFSAARVWWMFRAFGHDKVWVLDGGLPRWRASGYDVESPGDAILKASVATEAIEKVYQGQMVGPSTFQTKFQPHLVWSLDQVKRNIQDQTYQHIDARSKARFDGVAPEPRKGINSGHVPGSKCIPFPQMLDGSQTLLSREELEKKFGQEGISLDKPIVASCGTGVTACVLVLGLHRLGKTDIPVYDGSWTEWATQPDTPLCTSER*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37527" stop="37727"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRKNFFSVVQNALILPSLYFWLVQQLPLTILCTKKHSYAWISELRKAPEIKCIHALSSWSLYLMCH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="25085" e_stop="25166"/>
            <exon e_start="25800" e_stop="25987"/>
            <exon e_start="26308" e_stop="26367"/>
            <exon e_start="26553" e_stop="26615"/>
            <exon e_start="26861" e_stop="26985"/>
            <exon e_start="27067" e_stop="27086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.728" e_score="0.951"/>
          <exon-intron don_prob="0.957" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.786" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="0.968"/>
          <exon-intron don_prob="0.959" acc_prob="0.953" e_score="0.888"/>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="25085" e_stop="25166" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.728">
            <gDNA_intron_boundary i_start="25167" i_stop="25799" i_length="633"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25800" e_stop="25987" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.981">
            <gDNA_intron_boundary i_start="25988" i_stop="26307" i_length="320"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="26308" e_stop="26367" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.786">
            <gDNA_intron_boundary i_start="26368" i_stop="26552" i_length="185"/>
          </intron>
          <exon e_serial="4" e_score="0.968">
            <gDNA_exon_boundary e_start="26553" e_stop="26615" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="26616" i_stop="26860" i_length="245"/>
          </intron>
          <exon e_serial="5" e_score="0.888">
            <gDNA_exon_boundary e_start="26861" e_stop="26985" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.959" acc_prob="0.953">
            <gDNA_intron_boundary i_start="26986" i_stop="27066" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.950">
            <gDNA_exon_boundary e_start="27067" e_stop="27086" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25085" stop="25166"/>
              <exon start="25800" stop="25987"/>
              <exon start="26308" stop="26367"/>
              <exon start="26553" stop="26615"/>
              <exon start="26861" stop="26985"/>
              <exon start="27067" stop="27086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTAATTGTAAGAATAAAAAGGGAATTGTAAAATATTAATTCTTTTTTTTCACTCCTCAATTTCTTCTCTCTGCTATCACC : AGGAAACCATTTCGCTCGCTAGCAGCTCCAACTTACTAATCTACAAAGTTAAGGGTTATTTTACTCGTTGTATGGCTTCCTCAATGGTTGGGGCACAACCATCATTCTCAACACTAGCAATATCAACCAACGAACCTGTTGTTTCAGTTGACTGGCTCCATGCAAACATCAGAGACCCCGACTTAAAG : GTGTTAGATGCATCTTGGTACATGCCAGATGAGCAGAGAAATCCACTCCAGGAGTATCAG : GTCGCTTGCATTCCTGGAGCACTATTCTTTGATATAGACGGAATAACTGATCGGACTACAAAT : TTGCCACATATGTTGCCGTCTGAAGAAGCATTTGCAGCTGCTGTGTCTGCTCTTGGTATCAAGAACAAAGATGGGGTTGTTATATACGATGGCAAGGGCATTTTCAGTGCTGCCCGTGTTTGGTG : GATGTTTCGAGCTTTTGGAC</gDNA_template>
            <first_frame> N  *  L  *  E  *  K  G  N  C  K  I  L  I  L  F  F  H  S  S  I  S  S  L  C  Y  H   : Q  E  T  I  S  L  A  S  S  S  N  L  L  I  Y  K  V  K  G  Y  F  T  R  C  M  A  S  S  M  V  G  A  Q  P  S  F  S  T  L  A  I  S  T  N  E  P  V  V  S  V  D  W  L  H  A  N  I  R  D  P  D  L  K  :  V  L  D  A  S  W  Y  M  P  D  E  Q  R  N  P  L  Q  E  Y  Q  :  V  A  C  I  P  G  A  L  F  F  D  I  D  G  I  T  D  R  T  T  N  :  L  P  H  M  L  P  S  E  E  A  F  A  A  A  V  S  A  L  G  I  K  N  K  D  G  V  V  I  Y  D  G  K  G  I  F  S  A  A  R  V  W  W :   M  F  R  A  F  G  </first_frame>
            <second_frame>  I  N  C  K  N  K  K  G  I  V  K  Y  *  F  F  F  F  T  P  Q  F  L  L  S  A  I  T  :  R  K  P  F  R  S  L  A  A  P  T  Y  *  S  T  K  L  R  V  I  L  L  V  V  W  L  P  Q  W  L  G  H  N  H  H  S  Q  H  *  Q  Y  Q  P  T  N  L  L  F  Q  L  T  G  S  M  Q  T  S  E  T  P  T  *  R :   C  *  M  H  L  G  T  C  Q  M  S  R  E  I  H  S  R  S  I  R :   S  L  A  F  L  E  H  Y  S  L  I  *  T  E  *  L  I  G  L  Q  I :   C  H  I  C  C  R  L  K  K  H  L  Q  L  L  C  L  L  L  V  S  R  T  K  M  G  L  L  Y  T  M  A  R  A  F  S  V  L  P  V  F  G   : G  C  F  E  L  L  D </second_frame>
            <third_frame>   L  I  V  R  I  K  R  E  L  *  N  I  N  S  F  F  S  L  L  N  F  F  S  L  L  S  P :   G  N  H  F  A  R  *  Q  L  Q  L  T  N  L  Q  S  *  G  L  F  Y  S  L  Y  G  F  L  N  G  W  G  T  T  I  I  L  N  T  S  N  I  N  Q  R  T  C  C  F  S  *  L  A  P  C  K  H  Q  R  P  R  L  K   : G  V  R  C  I  L  V  H  A  R  *  A  E  K  S  T  P  G  V  S   : G  R  L  H  S  W  S  T  I  L  *  Y  R  R  N  N  *  S  D  Y  K   : F  A  T  Y  V  A  V  *  R  S  I  C  S  C  C  V  C  S  W  Y  Q  E  Q  R  W  G  C  Y  I  R  W  Q  G  H  F  Q  C  C  P  C  L  V  :  D  V  S  S  F  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="+"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25103" stop="25166"/>
                    <exon start="25800" stop="25987"/>
                    <exon start="26308" stop="26367"/>
                    <exon start="26553" stop="26615"/>
                    <exon start="26861" stop="26985"/>
                    <exon start="27067" stop="27085"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGNCKILILFFHSSISSLCYHQETISLASSSNLLIYKVKGYFTRCMASSMVGAQPSFSTLAISTNEPVVSVDWLHANIRDPDLKVLDASWYMPDEQRNPLQEYQVACIPGALFFDIDGITDRTTNLPHMLPSEEAFAAAVSALGIKNKDGVVIYDGKGIFSAARVWWMFRAFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39361" PGL_stop="40110"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39361" e_stop="40110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="39361" e_stop="40110" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39361" stop="40110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573238" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACGACCAAGACCGGCGACAATTCAGTTTTTCCGACGAGCAAGAGAGCCGAAACCGAAGCATTATCTTCGTATTCTCTAAGCTTCTCAATGCATCTAACCACTACTCCTCCTCCTCAACAGCTGAATTCAATACAATTATCTTCAAAACCCCTTTTACTCACATTGCCATTCAAATGCAGAAGGAAGTTTTCCCGTATAAGAAGACCTACCATTGTAGCTTCTTCTTCCAATACTAATAACAGTCCTGAAGGGTTTTCTTGGCTGCAACTTTCACAGTCCATTCGCCGTGGTTCCGAACGTTTCTTGAATCAATTGGAAGACTCTGTGAAGCAAGAGACGGGTTTTGATTTTAAGGATGTTAAAGTTAAAGTTGGGGAATTTTCAGGTCGAGCTGTTGATTCAGCCAAGAATGGCCAAGTTTTGCTGCAACGTTTTCAGTCTGAGTTGTTTCCTGAGTTCTTGAATTGGAACAAATTCGAGTCCTGGAAGGTGAATTTTCCCATTTCTTATTTGAGTTATTTGTATAACTTTGTGCTCACATTATCCTTTTTCCCCTTCCCCCAGGACGTCAAGAAATGGGATTCCAAAAGAGTTGGTGTATTCATTCTCTATATTATAGTTACGGTATGTTCTTGTCAAAAAATATATATGGCAATTCGAGCTCCTATTATTAATAGGGAAAGAAAAGAACTTACTGAGGCATACATGGAAGCATTGATTCCTGAACCTACTCCTGTTAATGTCAAAAG</gDNA_template>
            <first_frame> D  D  Q  D  R  R  Q  F  S  F  S  D  E  Q  E  S  R  N  R  S  I  I  F  V  F  S  K  L  L  N  A  S  N  H  Y  S  S  S  S  T  A  E  F  N  T  I  I  F  K  T  P  F  T  H  I  A  I  Q  M  Q  K  E  V  F  P  Y  K  K  T  Y  H  C  S  F  F  F  Q  Y  *  *  Q  S  *  R  V  F  L  A  A  T  F  T  V  H  S  P  W  F  R  T  F  L  E  S  I  G  R  L  C  E  A  R  D  G  F  *  F  *  G  C  *  S  *  S  W  G  I  F  R  S  S  C  *  F  S  Q  E  W  P  S  F  A  A  T  F  S  V  *  V  V  S  *  V  L  E  L  E  Q  I  R  V  L  E  G  E  F  S  H  F  L  F  E  L  F  V  *  L  C  A  H  I  I  L  F  P  L  P  P  G  R  Q  E  M  G  F  Q  K  S  W  C  I  H  S  L  Y  Y  S  Y  G  M  F  L  S  K  N  I  Y  G  N  S  S  S  Y  Y  *  *  G  K  K  R  T  Y  *  G  I  H  G  S  I  D  S  *  T  Y  S  C  *  C  Q  K </first_frame>
            <second_frame>  T  T  K  T  G  D  N  S  V  F  P  T  S  K  R  A  E  T  E  A  L  S  S  Y  S  L  S  F  S  M  H  L  T  T  T  P  P  P  Q  Q  L  N  S  I  Q  L  S  S  K  P  L  L  L  T  L  P  F  K  C  R  R  K  F  S  R  I  R  R  P  T  I  V  A  S  S  S  N  T  N  N  S  P  E  G  F  S  W  L  Q  L  S  Q  S  I  R  R  G  S  E  R  F  L  N  Q  L  E  D  S  V  K  Q  E  T  G  F  D  F  K  D  V  K  V  K  V  G  E  F  S  G  R  A  V  D  S  A  K  N  G  Q  V  L  L  Q  R  F  Q  S  E  L  F  P  E  F  L  N  W  N  K  F  E  S  W  K  V  N  F  P  I  S  Y  L  S  Y  L  Y  N  F  V  L  T  L  S  F  F  P  F  P  Q  D  V  K  K  W  D  S  K  R  V  G  V  F  I  L  Y  I  I  V  T  V  C  S  C  Q  K  I  Y  M  A  I  R  A  P  I  I  N  R  E  R  K  E  L  T  E  A  Y  M  E  A  L  I  P  E  P  T  P  V  N  V  K   </second_frame>
            <third_frame>   R  P  R  P  A  T  I  Q  F  F  R  R  A  R  E  P  K  P  K  H  Y  L  R  I  L  *  A  S  Q  C  I  *  P  L  L  L  L  L  N  S  *  I  Q  Y  N  Y  L  Q  N  P  F  Y  S  H  C  H  S  N  A  E  G  S  F  P  V  *  E  D  L  P  L  *  L  L  L  P  I  L  I  T  V  L  K  G  F  L  G  C  N  F  H  S  P  F  A  V  V  P  N  V  S  *  I  N  W  K  T  L  *  S  K  R  R  V  L  I  L  R  M  L  K  L  K  L  G  N  F  Q  V  E  L  L  I  Q  P  R  M  A  K  F  C  C  N  V  F  S  L  S  C  F  L  S  S  *  I  G  T  N  S  S  P  G  R  *  I  F  P  F  L  I  *  V  I  C  I  T  L  C  S  H  Y  P  F  S  P  S  P  R  T  S  R  N  G  I  P  K  E  L  V  Y  S  F  S  I  L  *  L  R  Y  V  L  V  K  K  Y  I  W  Q  F  E  L  L  L  L  I  G  K  E  K  N  L  L  R  H  T  W  K  H  *  F  L  N  L  L  L  L  M  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39362" stop="40108"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTKTGDNSVFPTSKRAETEALSSYSLSFSMHLTTTPPPQQLNSIQLSSKPLLLTLPFKCRRKFSRIRRPTIVASSSNTNNSPEGFSWLQLSQSIRRGSERFLNQLEDSVKQETGFDFKDVKVKVGEFSGRAVDSAKNGQVLLQRFQSELFPEFLNWNKFESWKVNFPISYLSYLYNFVLTLSFFPFPQDVKKWDSKRVGVFILYIIVTVCSCQKIYMAIRAPIINRERKELTEAYMEALIPEPTPVNVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="42141" PGL_stop="43021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42141" e_stop="42341"/>
            <exon e_start="42716" e_stop="42793"/>
            <exon e_start="42884" e_stop="43021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42141" e_stop="42341" e_length="201"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="42342" i_stop="42715" i_length="374"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42716" e_stop="42793" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="42794" i_stop="42883" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42884" e_stop="43021" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42141" stop="42341"/>
              <exon start="42716" stop="42793"/>
              <exon start="42884" stop="43021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598547" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGAACAATTAGATTCAGTAAATGCGAGGTATGTGGTTGAATTTGACATGAAGGAAGTTGAGAACAGCCTTCGCAAAGATGTTGTTGAGAAGACAAGAGAAACTCAAGGAACCAGGGCATTGTGGATCTCGAAAAGATGGTGGAGATATCGCCCGAAACTTCCCTATACCTATTTTCTTCAAAAACTTGATACTTCTGAG : GTGGCTGCTATAGTCTTCACAGAGGATCTGAAGAGAGTGTTTGTCACAATGAAAGAAGGATTCCCTCTTGAATATATT : GTTGATATTCCACTAGATCCTTTCTTATTTGAGATGATATCAAGTTCTGGAGCTGAAGTAGATCTACTTCAGAAGCGGCAGATTCATTACTTTTTCAAAGTTCTTTTTGCTTTATTGCCTGGAATACTGATTTTGTGG</gDNA_template>
            <first_frame> A  E  Q  L  D  S  V  N  A  R  Y  V  V  E  F  D  M  K  E  V  E  N  S  L  R  K  D  V  V  E  K  T  R  E  T  Q  G  T  R  A  L  W  I  S  K  R  W  W  R  Y  R  P  K  L  P  Y  T  Y  F  L  Q  K  L  D  T  S  E  :  V  A  A  I  V  F  T  E  D  L  K  R  V  F  V  T  M  K  E  G  F  P  L  E  Y  I  :  V  D  I  P  L  D  P  F  L  F  E  M  I  S  S  S  G  A  E  V  D  L  L  Q  K  R  Q  I  H  Y  F  F  K  V  L  F  A  L  L  P  G  I  L  I  L  W </first_frame>
            <second_frame>  Q  N  N  *  I  Q  *  M  R  G  M  W  L  N  L  T  *  R  K  L  R  T  A  F  A  K  M  L  L  R  R  Q  E  K  L  K  E  P  G  H  C  G  S  R  K  D  G  G  D  I  A  R  N  F  P  I  P  I  F  F  K  N  L  I  L  L  R :   W  L  L  *  S  S  Q  R  I  *  R  E  C  L  S  Q  *  K  K  D  S  L  L  N  I  L :   L  I  F  H  *  I  L  S  Y  L  R  *  Y  Q  V  L  E  L  K  *  I  Y  F  R  S  G  R  F  I  T  F  S  K  F  F  L  L  Y  C  L  E  Y  *  F  C   </second_frame>
            <third_frame>   R  T  I  R  F  S  K  C  E  V  C  G  *  I  *  H  E  G  S  *  E  Q  P  S  Q  R  C  C  *  E  D  K  R  N  S  R  N  Q  G  I  V  D  L  E  K  M  V  E  I  S  P  E  T  S  L  Y  L  F  S  S  K  T  *  Y  F  *   : G  G  C  Y  S  L  H  R  G  S  E  E  S  V  C  H  N  E  R  R  I  P  S  *  I  Y   : C  *  Y  S  T  R  S  F  L  I  *  D  D  I  K  F  W  S  *  S  R  S  T  S  E  A  A  D  S  L  L  F  Q  S  S  F  C  F  I  A  W  N  T  D  F  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42141" stop="42341"/>
                    <exon start="42716" stop="42793"/>
                    <exon start="42884" stop="43021"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEQLDSVNARYVVEFDMKEVENSLRKDVVEKTRETQGTRALWISKRWWRYRPKLPYTYFLQKLDTSEVAAIVFTEDLKRVFVTMKEGFPLEYIVDIPLDPFLFEMISSSGAEVDLLQKRQIHYFFKVLFALLPGILILW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="43570" PGL_stop="48324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43570" e_stop="43612"/>
            <exon e_start="44829" e_stop="44941"/>
            <exon e_start="45604" e_stop="45820"/>
            <exon e_start="47175" e_stop="47246"/>
            <exon e_start="48260" e_stop="48324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="0.977"/>
          <exon-intron don_prob="0.996" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.946" e_score="0.986"/>
          <exon-intron don_prob="0.984" acc_prob="0.164" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="43570" e_stop="43612" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="43613" i_stop="44828" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44829" e_stop="44941" e_length="113"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.880">
            <gDNA_intron_boundary i_start="44942" i_stop="45603" i_length="662"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="45604" e_stop="45820" e_length="217"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.946">
            <gDNA_intron_boundary i_start="45821" i_stop="47174" i_length="1354"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47175" e_stop="47246" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.164">
            <gDNA_intron_boundary i_start="47247" i_stop="48259" i_length="1013"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48260" e_stop="48324" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43570" stop="43612"/>
              <exon start="44829" stop="44941"/>
              <exon start="45604" stop="45820"/>
              <exon start="47175" stop="47246"/>
              <exon start="48260" stop="48324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574669" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTGCACGAATCAATGAAATGTTTTCTGTTGCTAGGAGAAAT : GCTCCAGCTTTTGTATTTATAGATGAGATTGATGCTATTGCTGGAAGGCATGCAAGAAAGGATCCACGCAGGAAGGCAACATTTGAGGCTCTGATTTCTCAGCTTGACGGGGA : GAAAGAAAAAACTGGTGTTGATAGGTTTTCACTAAGACAAGCTGTCATATTCATTTGTGCAACCAATCGGCCAGATGAACTGGACTTAGAATTTGTCCGCCCTGGACGTATTGACAGACGTGTGTATATTGGTTTACCAGATGCAAAGCAACGAGTGCAAATTTTTGGAGTTCACAGTGCTGGGAAACAGCTTTCCGAGGATATTGCCTTTGAGAAA : CTTGTCTTTCGTACAGTTGGATATTCTGGGGCAGACATAAGAAATCTAGTCAATGAAGCTGGAATAATGTCT : GTAAGAAAAGGACATTCTAAGATCAACCAGCAGGATATCGTCGATGTTTTGGACAAGCAATTGCT</gDNA_template>
            <first_frame> C  C  T  N  Q  *  N  V  F  C  C  *  E  K   : C  S  S  F  C  I  Y  R  *  D  *  C  Y  C  W  K  A  C  K  K  G  S  T  Q  E  G  N  I  *  G  S  D  F  S  A  *  R  G  :  E  R  K  N  W  C  *  *  V  F  T  K  T  S  C  H  I  H  L  C  N  Q  S  A  R  *  T  G  L  R  I  C  P  P  W  T  Y  *  Q  T  C  V  Y  W  F  T  R  C  K  A  T  S  A  N  F  W  S  S  Q  C  W  E  T  A  F  R  G  Y  C  L  *  E   : T  C  L  S  Y  S  W  I  F  W  G  R  H  K  K  S  S  Q  *  S  W  N  N  V   : C  K  K  R  T  F  *  D  Q  P  A  G  Y  R  R  C  F  G  Q  A  I  A </first_frame>
            <second_frame>  A  A  R  I  N  E  M  F  S  V  A  R  R  N  :  A  P  A  F  V  F  I  D  E  I  D  A  I  A  G  R  H  A  R  K  D  P  R  R  K  A  T  F  E  A  L  I  S  Q  L  D  G  E :   K  E  K  T  G  V  D  R  F  S  L  R  Q  A  V  I  F  I  C  A  T  N  R  P  D  E  L  D  L  E  F  V  R  P  G  R  I  D  R  R  V  Y  I  G  L  P  D  A  K  Q  R  V  Q  I  F  G  V  H  S  A  G  K  Q  L  S  E  D  I  A  F  E  K  :  L  V  F  R  T  V  G  Y  S  G  A  D  I  R  N  L  V  N  E  A  G  I  M  S  :  V  R  K  G  H  S  K  I  N  Q  Q  D  I  V  D  V  L  D  K  Q  L   </second_frame>
            <third_frame>   L  H  E  S  M  K  C  F  L  L  L  G  E  M :   L  Q  L  L  Y  L  *  M  R  L  M  L  L  L  E  G  M  Q  E  R  I  H  A  G  R  Q  H  L  R  L  *  F  L  S  L  T  G   : R  K  K  K  L  V  L  I  G  F  H  *  D  K  L  S  Y  S  F  V  Q  P  I  G  Q  M  N  W  T  *  N  L  S  A  L  D  V  L  T  D  V  C  I  L  V  Y  Q  M  Q  S  N  E  C  K  F  L  E  F  T  V  L  G  N  S  F  P  R  I  L  P  L  R  N :   L  S  F  V  Q  L  D  I  L  G  Q  T  *  E  I  *  S  M  K  L  E  *  C  L :   *  E  K  D  I  L  R  S  T  S  R  I  S  S  M  F  W  T  S  N  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43571" stop="43612"/>
                    <exon start="44829" stop="44941"/>
                    <exon start="45604" stop="45820"/>
                    <exon start="47175" stop="47246"/>
                    <exon start="48260" stop="48322"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AARINEMFSVARRNAPAFVFIDEIDAIAGRHARKDPRRKATFEALISQLDGEKEKTGVDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRVYIGLPDAKQRVQIFGVHSAGKQLSEDIAFEKLVFRTVGYSGADIRNLVNEAGIMSVRKGHSKINQQDIVDVLDKQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="54281" PGL_stop="55112"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54281" e_stop="54338"/>
            <exon e_start="54690" e_stop="55112"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54281" e_stop="54338" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54339" i_stop="54689" i_length="351"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="54690" e_stop="55112" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54281" stop="54338"/>
              <exon start="54690" stop="55112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTACAGCCTGCCATGTTCGAAGATTTTGTGAAGCCTTTCCAAATAAACATGGAGGAG : GAAGGACCATTGCCTCATAATGACCGTTTGAGTTATCAACCGCTGGACATTTATCCTGCGCCCCTCCACAGAAGTTAACATCAATGGTGGTTGTTTGAGTTTTCTGGTCAGACCGACATCGGAAGTTGCCTAGTAGTGAATGTTGAGGTTTAGAGACAATGTCCTTTTTCACATCAACTCTGACCAAAACCTTTGCAAACCAACAGAAAGGCTGCTTAGTAGATAGTAAGGTTGGGTTGCAAATGTTCCATTTTTTATTATTTAGGCACATTTTTGTTTCTTCTTTCCTTCTTTTGCTCTCTTTTCTTTTCCCTTAATTTATTTCATGGTTTAAATAGAGCAACTTTGTACAAGAAAGACCAATGAGAATCGAAAATGTAAAATTTGGCTATTTATATAAGTTAATGTTAAGTATATATTCAT</gDNA_template>
            <first_frame> V  T  A  C  H  V  R  R  F  C  E  A  F  P  N  K  H  G  G   : G  R  T  I  A  S  *  *  P  F  E  L  S  T  A  G  H  L  S  C  A  P  P  Q  K  L  T  S  M  V  V  V  *  V  F  W  S  D  R  H  R  K  L  P  S  S  E  C  *  G  L  E  T  M  S  F  F  T  S  T  L  T  K  T  F  A  N  Q  Q  K  G  C  L  V  D  S  K  V  G  L  Q  M  F  H  F  L  L  F  R  H  I  F  V  S  S  F  L  L  L  L  S  F  L  F  P  *  F  I  S  W  F  K  *  S  N  F  V  Q  E  R  P  M  R  I  E  N  V  K  F  G  Y  L  Y  K  L  M  L  S  I  Y  S  </first_frame>
            <second_frame>  L  Q  P  A  M  F  E  D  F  V  K  P  F  Q  I  N  M  E  E  :  E  G  P  L  P  H  N  D  R  L  S  Y  Q  P  L  D  I  Y  P  A  P  L  H  R  S  *  H  Q  W  W  L  F  E  F  S  G  Q  T  D  I  G  S  C  L  V  V  N  V  E  V  *  R  Q  C  P  F  S  H  Q  L  *  P  K  P  L  Q  T  N  R  K  A  A  *  *  I  V  R  L  G  C  K  C  S  I  F  Y  Y  L  G  T  F  L  F  L  L  S  F  F  C  S  L  F  F  S  L  N  L  F  H  G  L  N  R  A  T  L  Y  K  K  D  Q  *  E  S  K  M  *  N  L  A  I  Y  I  S  *  C  *  V  Y  I  H </second_frame>
            <third_frame>   Y  S  L  P  C  S  K  I  L  *  S  L  S  K  *  T  W  R  R :   K  D  H  C  L  I  M  T  V  *  V  I  N  R  W  T  F  I  L  R  P  S  T  E  V  N  I  N  G  G  C  L  S  F  L  V  R  P  T  S  E  V  A  *  *  *  M  L  R  F  R  D  N  V  L  F  H  I  N  S  D  Q  N  L  C  K  P  T  E  R  L  L  S  R  *  *  G  W  V  A  N  V  P  F  F  I  I  *  A  H  F  C  F  F  F  P  S  F  A  L  F  S  F  P  L  I  Y  F  M  V  *  I  E  Q  L  C  T  R  K  T  N  E  N  R  K  C  K  I  W  L  F  I  *  V  N  V  K  Y  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0019I01.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="71302" PGL_stop="68909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71302" e_stop="71232"/>
            <exon e_start="70363" e_stop="70293"/>
            <exon e_start="70165" e_stop="68909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.942" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71302" e_stop="71232" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71231" i_stop="70364" i_length="868"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70363" e_stop="70293" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.918" acc_prob="0.942">
            <gDNA_intron_boundary i_start="70292" i_stop="70166" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="70165" e_stop="68909" e_length="1257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71302" stop="71232"/>
              <exon start="70363" stop="70293"/>
              <exon start="70165" stop="68909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAAAGTTCCTGACAATGTTGACCTTCCATCGAGATGGACTTGTTCAGACAACTCATGCGACCCCGAGAG : GTCTGTGTGCTCAGCAGTTCAAGAATTAACAGCAGATCATCTGAGGGACCTACTACCTCATATTAATAAAG : CTTCCAAGAAAAGGAAGGCTTCTAAACAGGAAATGGACTTGGTTGAAACTCTGGATGGGCTTGATGCCCTTGCTCATCTAGCTATCCTAGAAGAGGGAGAGACCCTTCCAGCATCACCACAGGCCACAACTAAGCATCCACGTCATAGACCTGGGTGTACATGCATTGTCTGCATCCAGCCCCCTAGTGGAAAAGGTCCTAAGCACAAGCAATCATGTGATTGTAACGTCTGTAAATCAGTAAAGCGTCGTTTCAAAACATTGATGATGAAGCGTGAAAAAAAGTTATCAGAGAAAGAAGCAGAAGCTACTTGTCAAAAGCTGCAGCCGCAATCAGCTGGGCAATTGCTTGATGCTGATGACATTCAAGAACCTATTGATGATGCAGTGCATTCAAGCCCTCAGCATGAAGAGCTGAACATTGAAGGTTCTGTTGATCCCAATTACCTTAATGAGAAGAAATCTTCTGTTGAGGATCCCAATTACCTTGATGAGAAGAAATCTTCAGTTGATGACACAAATTACCTTAGTGAGAAGATATCTTCTGTTGATGACCCCAGCTACCTTAATGAGAAGGAATCTTCTGTTGATGATCCCAACATCCTGAATGAGAAGAAATCTTCTGTTGATGATCCTAACTGCCTGAATGAGAAGAAATCTGCTGTTGATGATCCCAACTACGTGGATGAGAGGAAATCTTCTGTTGATGATCCCAATTGCCTTAAGGAGAAGAAATCTTCTGCTTCACCATTTAAAGGTGAATTTGACCTGAATGCTAAGCCAGATAGGGACGACGAGCTTTCACCAGGCTCTGATTCTGGTAGCATGATGCGCATGATCAAACGTGCTGCTGAGCAATATGTCAGGCACTGTGATAATGGAAGTTCCGTGGGTAACCAAAGAGATGGAGATGGTGCTGGGGAGACAAATCCGGGTAATTGTGTTATTGTTAGTGGTAGTCATCAAGCTGATGTAGATCATAATAGGCCTTTACCCATAAGCGCTGCTGCATCTTTGGCACCTAATGACCAGTAAGTTGCTCCCTACATGAGGCACCTAAATTAGCTGTGCTATATTAAAAACCAGAGGTACTCCGCAGTGTATGGAAATTTGTACATTTTGGCTTTGCTGGCGTCATGCATTGTACATAGATAGACGTAGCAAGTAGCAACTGATGTAATCTTTCTGCAATCCACAGGTTGCATTTTGCAATGGCCGCGAGGTGCCTTACATATTTATTATATAAATGGCTGGAAAG</gDNA_template>
            <first_frame> R  K  V  P  D  N  V  D  L  P  S  R  W  T  C  S  D  N  S  C  D  P  E  R :   S  V  C  S  A  V  Q  E  L  T  A  D  H  L  R  D  L  L  P  H  I  N  K   : A  S  K  K  R  K  A  S  K  Q  E  M  D  L  V  E  T  L  D  G  L  D  A  L  A  H  L  A  I  L  E  E  G  E  T  L  P  A  S  P  Q  A  T  T  K  H  P  R  H  R  P  G  C  T  C  I  V  C  I  Q  P  P  S  G  K  G  P  K  H  K  Q  S  C  D  C  N  V  C  K  S  V  K  R  R  F  K  T  L  M  M  K  R  E  K  K  L  S  E  K  E  A  E  A  T  C  Q  K  L  Q  P  Q  S  A  G  Q  L  L  D  A  D  D  I  Q  E  P  I  D  D  A  V  H  S  S  P  Q  H  E  E  L  N  I  E  G  S  V  D  P  N  Y  L  N  E  K  K  S  S  V  E  D  P  N  Y  L  D  E  K  K  S  S  V  D  D  T  N  Y  L  S  E  K  I  S  S  V  D  D  P  S  Y  L  N  E  K  E  S  S  V  D  D  P  N  I  L  N  E  K  K  S  S  V  D  D  P  N  C  L  N  E  K  K  S  A  V  D  D  P  N  Y  V  D  E  R  K  S  S  V  D  D  P  N  C  L  K  E  K  K  S  S  A  S  P  F  K  G  E  F  D  L  N  A  K  P  D  R  D  D  E  L  S  P  G  S  D  S  G  S  M  M  R  M  I  K  R  A  A  E  Q  Y  V  R  H  C  D  N  G  S  S  V  G  N  Q  R  D  G  D  G  A  G  E  T  N  P  G  N  C  V  I  V  S  G  S  H  Q  A  D  V  D  H  N  R  P  L  P  I  S  A  A  A  S  L  A  P  N  D  Q  *  V  A  P  Y  M  R  H  L  N  *  L  C  Y  I  K  N  Q  R  Y  S  A  V  Y  G  N  L  Y  I  L  A  L  L  A  S  C  I  V  H  R  *  T  *  Q  V  A  T  D  V  I  F  L  Q  S  T  G  C  I  L  Q  W  P  R  G  A  L  H  I  Y  Y  I  N  G  W  K  </first_frame>
            <second_frame>  E  K  F  L  T  M  L  T  F  H  R  D  G  L  V  Q  T  T  H  A  T  P  R   : G  L  C  A  Q  Q  F  K  N  *  Q  Q  I  I  *  G  T  Y  Y  L  I  L  I  K  :  L  P  R  K  G  R  L  L  N  R  K  W  T  W  L  K  L  W  M  G  L  M  P  L  L  I  *  L  S  *  K  R  E  R  P  F  Q  H  H  H  R  P  Q  L  S  I  H  V  I  D  L  G  V  H  A  L  S  A  S  S  P  L  V  E  K  V  L  S  T  S  N  H  V  I  V  T  S  V  N  Q  *  S  V  V  S  K  H  *  *  *  S  V  K  K  S  Y  Q  R  K  K  Q  K  L  L  V  K  S  C  S  R  N  Q  L  G  N  C  L  M  L  M  T  F  K  N  L  L  M  M  Q  C  I  Q  A  L  S  M  K  S  *  T  L  K  V  L  L  I  P  I  T  L  M  R  R  N  L  L  L  R  I  P  I  T  L  M  R  R  N  L  Q  L  M  T  Q  I  T  L  V  R  R  Y  L  L  L  M  T  P  A  T  L  M  R  R  N  L  L  L  M  I  P  T  S  *  M  R  R  N  L  L  L  M  I  L  T  A  *  M  R  R  N  L  L  L  M  I  P  T  T  W  M  R  G  N  L  L  L  M  I  P  I  A  L  R  R  R  N  L  L  L  H  H  L  K  V  N  L  T  *  M  L  S  Q  I  G  T  T  S  F  H  Q  A  L  I  L  V  A  *  C  A  *  S  N  V  L  L  S  N  M  S  G  T  V  I  M  E  V  P  W  V  T  K  E  M  E  M  V  L  G  R  Q  I  R  V  I  V  L  L  L  V  V  V  I  K  L  M  *  I  I  I  G  L  Y  P  *  A  L  L  H  L  W  H  L  M  T  S  K  L  L  P  T  *  G  T  *  I  S  C  A  I  L  K  T  R  G  T  P  Q  C  M  E  I  C  T  F  W  L  C  W  R  H  A  L  Y  I  D  R  R  S  K  *  Q  L  M  *  S  F  C  N  P  Q  V  A  F  C  N  G  R  E  V  P  Y  I  F  I  I  *  M  A  G  K </second_frame>
            <third_frame>   K  S  S  *  Q  C  *  P  S  I  E  M  D  L  F  R  Q  L  M  R  P  R  E  :  V  C  V  L  S  S  S  R  I  N  S  R  S  S  E  G  P  T  T  S  Y  *  *  S :   F  Q  E  K  E  G  F  *  T  G  N  G  L  G  *  N  S  G  W  A  *  C  P  C  S  S  S  Y  P  R  R  G  R  D  P  S  S  I  T  T  G  H  N  *  A  S  T  S  *  T  W  V  Y  M  H  C  L  H  P  A  P  *  W  K  R  S  *  A  Q  A  I  M  *  L  *  R  L  *  I  S  K  A  S  F  Q  N  I  D  D  E  A  *  K  K  V  I  R  E  R  S  R  S  Y  L  S  K  A  A  A  A  I  S  W  A  I  A  *  C  *  *  H  S  R  T  Y  *  *  C  S  A  F  K  P  S  A  *  R  A  E  H  *  R  F  C  *  S  Q  L  P  *  *  E  E  I  F  C  *  G  S  Q  L  P  *  *  E  E  I  F  S  *  *  H  K  L  P  *  *  E  D  I  F  C  *  *  P  Q  L  P  *  *  E  G  I  F  C  *  *  S  Q  H  P  E  *  E  E  I  F  C  *  *  S  *  L  P  E  *  E  E  I  C  C  *  *  S  Q  L  R  G  *  E  E  I  F  C  *  *  S  Q  L  P  *  G  E  E  I  F  C  F  T  I  *  R  *  I  *  P  E  C  *  A  R  *  G  R  R  A  F  T  R  L  *  F  W  *  H  D  A  H  D  Q  T  C  C  *  A  I  C  Q  A  L  *  *  W  K  F  R  G  *  P  K  R  W  R  W  C  W  G  D  K  S  G  *  L  C  Y  C  *  W  *  S  S  S  *  C  R  S  *  *  A  F  T  H  K  R  C  C  I  F  G  T  *  *  P  V  S  C  S  L  H  E  A  P  K  L  A  V  L  Y  *  K  P  E  V  L  R  S  V  W  K  F  V  H  F  G  F  A  G  V  M  H  C  T  *  I  D  V  A  S  S  N  *  C  N  L  S  A  I  H  R  L  H  F  A  M  A  A  R  C  L  T  Y  L  L  Y  K  W  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0019I01.3" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71302" stop="71232"/>
                    <exon start="70363" stop="70293"/>
                    <exon start="70165" stop="69132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1173</number_coding_nucleotides>
                  <number_encoded_amino_acids>391</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKVPDNVDLPSRWTCSDNSCDPERSVCSAVQELTADHLRDLLPHINKASKKRKASKQEMDLVETLDGLDALAHLAILEEGETLPASPQATTKHPRHRPGCTCIVCIQPPSGKGPKHKQSCDCNVCKSVKRRFKTLMMKREKKLSEKEAEATCQKLQPQSAGQLLDADDIQEPIDDAVHSSPQHEELNIEGSVDPNYLNEKKSSVEDPNYLDEKKSSVDDTNYLSEKISSVDDPSYLNEKESSVDDPNILNEKKSSVDDPNCLNEKKSAVDDPNYVDERKSSVDDPNCLKEKKSSASPFKGEFDLNAKPDRDDELSPGSDSGSMMRMIKRAAEQYVRHCDNGSSVGNQRDGDGAGETNPGNCVIVSGSHQADVDHNRPLPISAAASLAPNDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="79951" PGL_stop="79694"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79951" e_stop="79694"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="79951" e_stop="79694" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79951" stop="79694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602135" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTCTCTAAAATCTTTCAGTCTCTGCAAATTAAACCCTCTTTTGCTCTCTCTAATGGCTAAAATTTATCAATCACTCCGTCACTTCATTTTCTCTCTCTAGAATTTGTTCATCTCTCTAGGGTTTCAGTTTTCACTTTCCTTTCTTTCGCTATCTCTAACGAGAATTTTCCCTGTTGAACCAAAAAAACTTTTCCTTTTCGTTCCTTTTTTTTTTGTTTGGTTTTATTCACACCGTTTGTAAGTGTTTTTTTTTT</gDNA_template>
            <first_frame> L  S  L  *  N  L  S  V  S  A  N  *  T  L  F  C  S  L  *  W  L  K  F  I  N  H  S  V  T  S  F  S  L  S  R  I  C  S  S  L  *  G  F  S  F  H  F  P  F  F  R  Y  L  *  R  E  F  S  L  L  N  Q  K  N  F  S  F  S  F  L  F  F  L  F  G  F  I  H  T  V  C  K  C  F  F  F </first_frame>
            <second_frame>  S  L  S  K  I  F  Q  S  L  Q  I  K  P  S  F  A  L  S  N  G  *  N  L  S  I  T  P  S  L  H  F  L  S  L  E  F  V  H  L  S  R  V  S  V  F  T  F  L  S  F  A  I  S  N  E  N  F  P  C  *  T  K  K  T  F  P  F  R  S  F  F  F  C  L  V  L  F  T  P  F  V  S  V  F  F   </second_frame>
            <third_frame>   L  S  L  K  S  F  S  L  C  K  L  N  P  L  L  L  S  L  M  A  K  I  Y  Q  S  L  R  H  F  I  F  S  L  *  N  L  F  I  S  L  G  F  Q  F  S  L  S  F  L  S  L  S  L  T  R  I  F  P  V  E  P  K  K  L  F  L  F  V  P  F  F  F  V  W  F  Y  S  H  R  L  *  V  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0019I01.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 20 chains have been computed
$ 
$ memory statistics:
$ 34400 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2150 bytes was the average size of a spliced alignment
$ 18728 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1702 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 22 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:15:56
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