<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:24:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573815" ref_strand="+" ref_description="SGN-U573815 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147787791|emb|CAN67233.1| (e_value=4e-100) hypothetical; (*ATH) AT4G31210.1 (e_value=2e-92) | Symbol: None | DNA topoisomerase family protein, similar to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis} | chr4:15165286-15172693 FORWARD | Aliases: F8F16.30, F8F16_30; (*SWP) sp|Q1RIM1|TOP1_RICBR (e_value=2e-61) DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA; ">
      <seq>gatttagtgcatgcctatcttgcaaggcgtgctcttgattacctgattgggttcaacatttctccacttctgtggaggaaattacctggttgtcaatctgctggtcgggttcagtctgctgccctatcacttatatgtgacagagaaatggaaattgatggattcaaaccacaggagtattggacagtcctggttgaatttaagaagaacaaaaacctagatttagccaataactttttgtcgtcccatttgacccattttgataccaagaaattaagtcagttctctgttagctctcataccgaagcaatggaaattgaagggaagataaattcatcaaactttgaagttcttagctctaagataaccaaaaagcagagaaacccctctcctccttatataacatcaacacttcagcaagatgccgcaaacaaattggacttttcatcaacatatacgatgaaacttgcacaaaagctatatgagggaatccagttatctgatggcaagtcaacaggattgataacttacatcagaacagatggcttgcacatttcagatgaagctaccaaggacattcaatcctatatcagtgaaaggtatggacagaattttgcatcaaaagaatggtcgcaaatacttcaagaaagtgaagaatgctcaagaagcccatgaagctattagaaccactgatatccgaaggttacccccaaagcttggccgggtgctggatgatgatgcacttaagctaaacaaacttatatgggtcccgtaccatgggcatgccagaaggaacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="3028" stop="1633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2729" g_stop="1933" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="800" r_length="800" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-U573815" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2729" e_stop="1933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATC-AAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCCACTGATATCCGAAGGTTACCCTCAAAGCTTGTCGGGGTGCTGGATGATGATGCACTTAAGCTATACAAACTTATAT-GGTCCCGTACCAT-GGCATGCCAGATGGAACCTGC</genome_strand>
        <mrna_strand>GATTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAAGAATGGTCGCAAATACTTCAAGAAAGTGAAGAATGCTCAAGAAGCCCATGAAGCTATTAGAACCACTGATATCCGAAGGTTACCCCCAAAGCTTGGCCGGGTGCTGGATGATGATGCACTTAAGCTAAACAAACTTATATGGGTCCCGTACCATGGGCATGCCAGAAGGAACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584726" ref_strand="+" ref_description="SGN-U584726 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157338570|emb|CAO41921.1| (e_value=0) unnamed; (*ATH) AT4G20130.1 (e_value=0)  Symbol: None | ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase-related, contains weak similarity to Swiss-Prot:P94026 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N- methyltransferase, chloroplast p... ; ">
      <seq>gcccctgggcactctctcactgacagtagagtggataacgtttcaagaacccaaattccatcgatgtatgaatcttctttactgaaattccactaaatttttagctcactctcaagaatggtttcttccaccattctaattcagcaaccgacgaacttcttccaccagccagagcttcaccatcagctatggagaggtctgcagcatggatgtgttgcatcattgcagaaacaacctattttggtatgtaatagtaacaagagaaacagacctttgagagtttcttcaagtgctaatggtgctgttacttcttccactttggaggcctatgattcttctccgtctccttctgcatttcctctttttacacccccttctcaaccccaagatactcccgcttctcagttggaactggcagatcctgatttctacaaaataggatatgttagaagttttcgagcctacgggattgaattcagggagggaccagatgggtatggagtgtttgcttccaaagacgtggaacctctccgtcgagctagggtaataatggaaattcctttagaacttatgttaaccataagcaaaaagcttccttggatgttttttccagatattatacctgtaggacatccagtattcgacattatcaattcaaccaatcccgagacagattcggacttgaggttggcgtgccttcttttatatgcttttgattgcaaggacaacttttggcagctatacggagacttcttgcctagtgctgatgaatgcactagctttcttctagctaccgaggaggatcttttggagttgcaagacgagaagcttgcttctaccatgagagaacagcaaaatcgagcacttgagttttgggagaaaaactggcattctgcagtacctctcaaaattaagcgtcttgctcaggatcctgagagatttatttgggcaatgagtatagcacaatctcgatgcatcagcatgcaaacaagaattggttcactggttcaagaagcaaatatgttggtaccttatgctgacatgatgaatcattcttttcagccaaattgctttttccattggcgcttcaaggaccgcatgctggaggtgatgataaatgcaggacaaaaaattagaaaaggagatgagatgactgttaattacatggctggacagaagaatgacttatttatgcagagatatggtttctcatcgcctgtgaatccttgggatgtcattcatttcaccggagatgccaaaattcatctagacacctttttatcggtctttaacatatctggcctccctggagaatattaccacaacacaggtaagctatcaaatgatggagacagattcgtcgatggagcaataatagcagccgcaagaacgttgcccacttggtcagatggagatctccctccaattccaagtctagagaggaaagcagtgaaggagctgcaagaagaatgccaccagatgcttgcagaatttcccacaacttctgacgaagaccagaaaatcctagattcgatgcctgaatgcaggagaacattcgaagcagcaataaagtatagattacatcggaaattactgatagagaaggttatacaggccttggacatttaccaagacaggattctgttctaaacatgaataacagcaggagttgaagcaatctttaccagaaatcatgtagccatagaagacgggcgtcaagattatggttccatttcagctatgcagaaagctttatctatcacaatagcttttgcaacattttgagggcttttgttgggggtgggtgtaggaagtagctagtaatggtgtataggtggaaaatgacttataccattagttttggaaagatatgaagtgaagaaaaatgagaagttctctatagaaatcatgatgaaaatgaaggatagctttggtggatatgtttgataacaagtagaaaggctcttttgcatgaatgaaatatatgaattctctttaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="16821" stop="8331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16522" g_stop="16337" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16336" i_stop="16242" i_length="95">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16241" g_stop="16023" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="405" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16022" i_stop="15130" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15129" g_stop="14992" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="543" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14991" i_stop="14516" i_length="476">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14515" g_stop="14390" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="669" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14389" i_stop="14146" i_length="244">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14145" g_stop="14017" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="798" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="14016" i_stop="13476" i_length="541">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13475" g_stop="13386" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="799" r_stop="888" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13385" i_stop="13306" i_length="80">
            <donor d_prob="0.338" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13305" g_stop="13155" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="889" r_stop="1039" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13154" i_stop="11446" i_length="1709">
            <donor d_prob="0.681" d_score="1.00"/>
            <acceptor a_prob="0.166" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="11445" g_stop="11336" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1040" r_stop="1149" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="11335" i_stop="10663" i_length="673">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="10662" g_stop="10591" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1150" r_stop="1221" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="10590" i_stop="9944" i_length="647">
            <donor d_prob="0.367" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9943" g_stop="9838" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1222" r_stop="1327" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="9837" i_stop="9745" i_length="93">
            <donor d_prob="0.282" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="9744" g_stop="9544" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1328" r_stop="1528" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="9543" i_stop="9208" i_length="336">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="9207" g_stop="9165" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1529" r_stop="1571" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="9164" i_stop="9061" i_length="104">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="9060" g_stop="8631" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1572" r_stop="2001" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-U584726" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2001</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16522" e_stop="16337"/>
          <exon e_start="16241" e_stop="16023"/>
          <exon e_start="15129" e_stop="14992"/>
          <exon e_start="14515" e_stop="14390"/>
          <exon e_start="14145" e_stop="14017"/>
          <exon e_start="13475" e_stop="13386"/>
          <exon e_start="13305" e_stop="13155"/>
          <exon e_start="11445" e_stop="11336"/>
          <exon e_start="10662" e_stop="10591"/>
          <exon e_start="9943" e_stop="9838"/>
          <exon e_start="9744" e_stop="9544"/>
          <exon e_start="9207" e_stop="9165"/>
          <exon e_start="9060" e_stop="8631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTGGGCACTCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAGGTTAGGCCTTCGCCCCCACAAAACCAAATCATTCAAGAATGAATCTTTTTGCTTTTTGATTTTATGGGTGTTTGATTTTTTAATAATTGAACCAGCTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAGGTATTTTCTACTTGCCCCTTCTGTTTCATGTTCTTGAAGTTCAAGTTTAGTTTAATCACATCTTGTTACTTTCTGTGTGATAAGTGCTGTTTTCTTTTGGTAAGCTCACTGTATAAGTGCAATATGCAACACTTTTATGTACTCTTTTTTGTAGTTAGAGTTTTGGCACTGCATACCTTTTCCTCTTCAGTCATGGTTTCTTTTACTTTAATAGAATGCCAAACAAACAATGGACAACAATAAGCACTAGTCTCTCAATAAATTGAAGGAAGTGACAGCCAGGCAGTTGATGTTTGGAAAAGATAGGAGTTACACTTTGAAGATCGATGGAATTGTTCTTATGAATTGGTTTTGTTCCTCATTCAGATTTTCTTCACAAATTATTTGGTTCTAGGTCAGGTCCCATATAAATTTTTGGTGATTACTGTGTTAGAAATACAAAATGTTCTACATCAGGTATAGGGGAATCATATACCTAAAGCATTCTCTACTACTCCTTCACTGCATAAATTTTTCTTTAATATGTCGGAATTTCTAACCAATTAGTAAGTCCGTTCTCACACGTGTGAGTCTGCATTGGTTTCAGATATATAGAATGCCTAACATCTGGTGTTTAGGGGCATCCAAAGGGTTATGATGATTTTGAGCTACTCCCCAATTACCTTAAGATTTTCACTTAGATGCTCATGTTCGTTCTCACGTTCTCATGCATAGATATCCCATTTCTATTGTTACATAGTCAAACTAATGGTTGGAATCCCTCTACTTTCTCGGTCTTACATCCTTTGAGAAGCTGATGAACATATATTTTCCTATTTGATTATTTCAAATTATCCTTATTTTCTCCTGTTCTAATTGTTGATGATGGTGGTATAACATTTTCATATGAACAGTTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTGCTTCCAAAGACGTGGAACCTCTCCGTCGAGCTAGGGTGAGCACTACCTTACAACATGTTTGTATGTACAATGTTTTCCTCCTCCTGATGAAATGTTTAACTATATCAATTACCATCGGAAGCAGTGTCAAATTTACTGCTCCATCAATGTTTTACTATACCAAAAGCTGGACTTCATCCCATCAATTCCACCATGAAATTGGTGGGGGTAGGAAAAAAGGACATGGGAGAATTGTAATACCTTTAAACTACCTTCCTTCTCTCTGAGATAAGTATCTTTAGTTGATTTCCCTCATTTGCTTTTTAACCTTGATAAGTTATATTTGCAGTGGCTAGGCACTACTAATTCTTCTCCTGCTGTGGTGTATTTTATCATGTCCTACATAGTTTTGACTGTCTAATTCATTTGGCATTAGCTTGGCTGTTTGATTGCTCTTTTCGCACTGATTATCTTCACACCTTTTCGTTATCACTAAAATTCAGTGAATCATGAGGTTTTGTTTGTAATGCAGGTAATAATGGAAATTCCTTTAGAACTTATGTTAACCATAAGCAAAAAGCTTCCTTGGATGTTTTTTCCAGATATTATACCTGTAGGACATCCAGTATTCGACATTATCAATTCAACCAATCCCGAGGTAAAAGGATGCATTTTCCTTTTAAATATTTTAATTTTCCTACTAAATATTATTTAATGGAACACATGGGAGAATATTTATCCACATTTTCTTTGATTGGATAAAAATAAAAATTAGACGTCTTACCTTTTCCCTAATGGTACACATGAGAGGATTTGTTTTTATGCTCTAAATTTTTTCATTTTCTTTTTGGTTTTCTAAGATTTCTTGTGACTTTTTAATATTGATTACCTTCTTATGGCAGACAGATTCGGACTTGAGGTTGGCGTGCCTTCTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAGGTCTGGATATGAGTATCATCCAAATTTCAGTGCATTCAATTAATGTAATATTTTGTGGAAGATTCTATAGAAAATGCTATGCATTCACAAAATTATTCTGCACTTTGTTATGGTGTTCTGCTGAGGTTCAAGTTTGAGTAACTCGAAATGTGAATTAGAAAAGCTTTTGTGATATTCACACTGTTATGTGACCTTTGCTATTAGTGGGTTCTAATTTATAACAAAAGTTTCTTCGACTGAATCTTGTTTTTTTCCATGACTGTTGAAGCTCTCTTCTGTGTATTTAAGTCTATTTTGGAGTTACCATTTTGGTTTTCAATCTGAAAATTAATATGTGGTTGAAGCTTCTTCATTTCTGTGCTTTGCATTTTCATTAGTCAGCTGGGCTGGTTTTGATTAGAAAGATTAGTTGCAAACTGAAAAATGGAATGGCTGCATTTGGCATATTCATGGTGGATTAATTTCTAGAATTTCAGTGCTAGAGTAAATAAATAATTGTTTTGTGTTCCTGATGCTCTTCTTAATGCTTTCTGTGGTGTAGGAGGATCTTTTGGAGTTGCAAGACGAGAAGCTTGCTTCTACCATGAGAGAACAGCAAAATCGAGCACTTGAGTTTTGGGAGAAAAACTGGGTACAGACAATCTTGTTAAATCTCTTTCCCCCAGATTCCTGCTCACTAACATTGGCCTTTGACTTTCTTTATTTGTTTAGCATTCTGCAGTACCTCTCAAAATTAAGCGTCTTGCTCAGGATCCTGAGAGATTTATTTGGGCAATGAGTATAGCACAATCTCGATGCATCAGCATGCAAACAAGAATTGGTTCACTGGTTCAAGAAGCAAATATGTTGGTACCTTATGCTGGTGAGCTTCTTTATTGTATTTCTGTCCAAAATTTCAATAGTGAAATCGGGAGCTTTAATTAGTTTATTCACACAATGCAGCACCCTACTTTTAACAGATTGAACTTGGCTGAGATATTTTAAGATAGTCTGAATGGCATCCTTTATTTAATTATTGTTTAGATTGGTCTTGAAGTGATGCTCATGTGTACTTTAAGATGTTAAGTGGATCCAAAAGAGCAGATCCATGACTGCAGTAACAAGTTAGTCACTGAAAAATATGTTCAGTGTTCAGTTTACTGAAACCATGCCCCCAATGAGAATATTGTGTATTCAATTTTTTCCATTTTTTAAAAATAGCTGTGCTTTCTCCCTCTGCAGTCTGCATTATGAAACTCGACGCAGTTACTGTTACAGGTGGAAAATATTTGTCCACCCTAATGATATTTAATACTACTTTCATCACATTTTGGTAAGAAATATATGGTTCATAGAGGGTTTTCTTTAGTCTAATATATACTGTTTATTCTAAGAATTGTAATTATTCATATCTGATGTTAGACAGAGTGTATCAAGTAGTCAACCATTGTAAAACTAACCAGGTCATATTTTATGGGACAGAAGGAGTACCTTACAGAAGAGTAAAATCTGTTTTCCAGAGTTCCCACAAAGTTGTCCTATCAAAGAAAACATATCCCCTCAAAAATAAAATATTATATCAGCTTTTGAATTTCTCTCTACCCAAAACATCAGATTTTCGCCCATCCCTCCCTTTGTTTCAGCCTTGTGTGTGTATCTATGTGTCTCATATTAGAAGAGGCAAAATTAAACATTCTCAAATACTAGTCCTGGCAAAATTAAACATTCTCAAAATTAAACACTTCTCTCTGCATTTCCATCTTCCATTTGTTTCCTTGATTCAAATTCATCATTTTGCTATAGAATACAGCTCAATATCAAGATGGAGGTGCAATGACTTCTTATTTTTTGAGATAAGGAAGGTTTTATTGTTTGGCCGAACAAGTTTCATGAAAATACAAAATGGAAATGTAAAAAGTTGGAATTTCTTTTCCTTCTCCTTCTCCTTCAAAAAAGAAGAAAAAATTTGGAACTTTTCTGGATAATTTCTTGAAAACGAGGAGCATTGCAAAATACTGAAGGATGCTGATAACCGGAAGACAATGGTGATTATGAGAGAAAAATTGGTGACTTTGAATATATATTAACAGTTCCTTTGACTTGACATGATGAGAATTATTTGTTAATGGTTTTGCTATTTTTCTTCTTTTTCCATTAATTGCTAGTGAAGGCCTCAATAACTGTTATTCTCATTGCATCTGTGTCTTTCTAGTCCTAAAGTTTGATGTTGACTGGCGATGTGGTGATGCACATTATGCTTTCTTTTGTAAGTCACATATTTTGAAACTTCCACAAAAGTAATCGATGTATTAAAAGTCTATATTAGCTCTACTAATGCCAGTCAACTTTGTAGAGAAGTTCAGAAAACCTGAAAGCTTTTGAACTAGTATTAAAGAACACAACAACAAGACCTAATACTATGCCTTACCAAGCGTATTATTGTGACCTGTGTTTAAGAAAAAAAACTTAAAGACTTATTAGATAGGGATTCTTCATAATTTCAAGGCAGACTTGCTTGCAATTATCTGTAGCATCTTTAACCAAACTTTGTTTGTGAGGAAGTCCTAACATGTAACTCATCTCATTCTCCAGACATGATGAATCATTCTTTTCAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGCATGCTGGAGGTGATGATAAATGCAGGACAAAAAATTAGAAAAGGAGATGAGGTAAATCCTTTTAGCTTTCTAGATCTACTGGAGGCTTCATTTGAACTGTGTTGTGTGCGCATTAGTCGGAACATCTTATCACATAGGGAATGTAACTGGCTTTGTCAGTGAGTCGGCTTATTTTGGATAATTCATCTGGAGAAGATGGCATTTTGCTTAGTAGGAGAAGATGCATGACTCATGTTAATTTCTGCCCGGAAGGCATGTCTTACATTCAGTGGTGCAGAAAAAATTGTACTCCATTTTCTTGTTGAACATAGGTCGTATATGATATCTAGGGCTATCTTATTTTTAAGAATGCATTTCTTGCATCAGAGTCTTGCTTATTCTAGGCCCAAAAAGACATTTTCAACATCAAAATCTTGCATAATTAAGGATGACCTCGTTTGGTGCCATTGACTTTGTCACCTACTCCTCAGCGTGCAAGGTCTTGCCTTCCACTACAAGGAAAAAAATAAGCTAAATGAAAAGTAGAGTTTAAAATGAAAGAAGAAATAGCATGCAGTATTGCGTGACATACTTTAACTAATGTGCATCTGTCCTTGGTGGTGCTTCTGTCGTCTTCAAATCTTGGGTCTGTGGCTGATCCAACTATATGTGGCCCTGTTTGTCTTTGTTGCTATTGTATAATCTTGATAATATGGCCTAACATGACCTTTATGAATTCTTGCAGATGACTGTTAATTACATGGCTGGACAGAAGAATGACTTATTTATGCAGAGATATGGTTTCTCATCGCCTGTGGTAATGCAGTTATTCTTTACTCTTCCCAGAAAACAGAAGTTGTGTCGGTATTTTTTCTGCTGAAAAGTATGAAATTCCAACTCGAAGTTCCTAGTACTACTGATTTTGTGTAGTAACATTCATTGCTGTAGTCATATTTAAAAGACTGGCAAGAAATCGCTGTAAATGGACATTCAATGTGTACTATCAAGCCTGACAAGTGTAGATGAATTTTGAAGATGAGATAAACCTAAAAGTGAAAGGGAACAGGATTAGAGTGAGGAAAAAATTCTTCCAGTTATTGTCCTTGTCTTGGGTTATTGAGAATAGGTTAATTTGGGCATTTAATCATAGAATTTTGAGTGGGGCTTGAGTTTAATTATTTGTTCAATGATGCTCCATATAGTAGAAGAATTTTGATATTTGTACTGAATCAGAGGAAGAAAGAGAAAGACGGTGTAACATATATTCTTTGTTTACAAATTATTCTAATGAAGCTTATGATTTGATTAGTTGTCAGGGCCATCTATCTCTATGACATGGAAATGAATTTAAATATATGATTGTTGATTTCGTTGAACTTTTGCTTTGAGTATGAGATGTCTTTCTCTGTTCTATTTTTTCTTCTTTTTCTACTGACACTATAATATATATCCTTGATATTGTAGAATCCTTGGGATGTCATTCATTTCACCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACAGTATGGGTCTTAAAGAATGTTTTTGATATACTAGAGCTCCTTCACTGATCTAGGTTTGCAATTATGTTTAGAATCCTTGTTTAAAACTTGAAGCAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAGGTAAGCCTGGATTGTGTACTTCTATCTAATGATGCATGTTGAAGAAGAAATATAACTCCATCTTCTATGCGCTATGGTTGTCACCTGTATTTCATGCTAAAAAACAATGTGGATTTATGTATATTGAATTCAGAATCCATCAATCCTAGTACTGACTAACATCATAAGTTTTGGCTTTTGCCACGAATTACAAAGCTTGTAGGCGTCATGCTACACATGGGCTGACACTGTTTACCACTTTTTGTTGATTTCATCGGTTGACTTTGTAACATATTTCATTATTCACGTCATAATGCTGTCCAACAATGTATTCGTTTTCCTGGTTTCTGTGAACAGATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAAGTACGTAATGTATGAAGTATTATTCGTCATTGCATGCAGAGATCATCTTATCTTTGCTTCAATGTGAATGCAGATCTTATTTACATAATGCTTTCGTTTGGCAGGTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACC</genome_strand>
        <mrna_strand>GCCCCTGGGCACTCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAG...............................................................................................CTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTGCTTCCAAAGACGTGGAACCTCTCCGTCGAGCTAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATAATGGAAATTCCTTTAGAACTTATGTTAACCATAAGCAAAAAGCTTCCTTGGATGTTTTTTCCAGATATTATACCTGTAGGACATCCAGTATTCGACATTATCAATTCAACCAATCCCGAG....................................................................................................................................................................................................................................................ACAGATTCGGACTTGAGGTTGGCGTGCCTTCTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATCTTTTGGAGTTGCAAGACGAGAAGCTTGCTTCTACCATGAGAGAACAGCAAAATCGAGCACTTGAGTTTTGGGAGAAAAACTGG................................................................................CATTCTGCAGTACCTCTCAAAATTAAGCGTCTTGCTCAGGATCCTGAGAGATTTATTTGGGCAATGAGTATAGCACAATCTCGATGCATCAGCATGCAAACAAGAATTGGTTCACTGGTTCAAGAAGCAAATATGTTGGTACCTTATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGATGAATCATTCTTTTCAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGCATGCTGGAGGTGATGATAAATGCAGGACAAAAAATTAGAAAAGGAGATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTGTTAATTACATGGCTGGACAGAAGAATGACTTATTTATGCAGAGATATGGTTTCTCATCGCCTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCTTGGGATGTCATTCATTTCACCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA.............................................................................................CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG................................................................................................................................................................................................................................................................................................................................................ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA........................................................................................................GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAAGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604253" ref_strand="+" ref_description="SGN-U604253 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157338569|emb|CAO41920.1| (e_value=3e-16) unnamed; (*ATH) AT4G19610.1 (e_value=2e-16) | Symbol: None | RNA recognition motif (RRM)-containing protein, contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) | chr4:10677675-10681633 FORWARD | Aliases: F24J7.162, F24J7_162; ">
      <seq>cccgtaatgatgaagttatgaccgatacggattatttcaaaagtagagtgaggaaagattggtctgattcagaaagtagtgaagacgatggtagtgataatgaaagtgacaagagcagtgaagatgcaaatgctggtaatatccttgaacctgatgatacagaggaatttttgagtgatggtctcaccagatctaacaatgaggcagcgcttgagcttgttgacccttcatcaagtgttaaggacgaaatagaagaagatctggagagcggacgattatttgttcgtaatcttccatacaccactacggaagaggagctggaagaacactttagagcatttggcaatgtctcacaggttcatattgttgttgacaaagatacaaagcggtccaaaggaattgcatatgttctctatccattaccagaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="26668" stop="27824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26968" g_stop="27274" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27275" i_stop="27400" i_length="126">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27401" g_stop="27524" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="431" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-U604253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26968" e_stop="27274"/>
          <exon e_start="27401" e_stop="27524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGTAATGATGAAGTTATGACCGATACGGATTATTTCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATGAGGCAGCGCTTGAGCTTGTTGACCCTTCATCAAGTGTTAAGGACGAAATAGAAGAAGATCTGGAGAGCGGACGATTATTTGTTCGTAATCTTCCATACACCACTACGTAATACATCTTCGTTCTGCTTTTTCCTTTTTTTGGGCGATTTAGTCAACTCAATATGTTGCACTGTTTTATGACTTTAATGAACCTAATACATGTTCTTGTTAAACTGATGGGTTTATGATTCAGGGAAGAGGAGCTGGAAGAACACTTTAGAGCATTTGGCAATGTCTCACAGGTTCATATTGTTGTTGACAAAGATACAAAGCGGTCCAAAGGAATTGCATATGTTCTCTATCCATTACCAGAATCT</genome_strand>
        <mrna_strand>CCCGTAATGATGAAGTTATGACCGATACGGATTATTTCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATGAGGCAGCGCTTGAGCTTGTTGACCCTTCATCAAGTGTTAAGGACGAAATAGAAGAAGATCTGGAGAGCGGACGATTATTTGTTCGTAATCTTCCATACACCACTAC..............................................................................................................................GGAAGAGGAGCTGGAAGAACACTTTAGAGCATTTGGCAATGTCTCACAGGTTCATATTGTTGTTGACAAAGATACAAAGCGGTCCAAAGGAATTGCATATGTTCTCTATCCATTACCAGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562869" ref_strand="+" ref_description="SGN-U562869 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157338659|emb|CAO42010.1| (e_value=5e-50) unnamed; (*ATH) AT1G14650.1 (e_value=3e-47)  Symbol: None | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein, similar to SP:Q15459 Splicing factor 3 subunit 1 (Spliceosome associated protein 114) {Homo sapiens}; contains Pfam profiles PF00240: Ubiqui... ; (*SWP) sp|Q8RXF1|SF3A1_ARATH (e_value=2e-46) Probable splicing factor 3 subunit 1 OS=Arabidopsis thaliana GN=At1g14650; ">
      <seq>aagctcccgcttctctgcaaaaatccctcgtcgacggtaatcatcctagcagacagaaatttccggccgtttttgaacagagagggatttgtttgggcactccattgtttaatcagaaatagaaatgttaggcatcacaccgatattgccccttccggcacccccgttggatgggaatctgggaccaacacctctagctcaggtggtagaggaaccaaatgatgttaagatggaagagaatgaagaggaaaacaataaggacaaggttccagcatctgttgcaacacatacgagaactattggtatcatttatccccctcctgatattaggagtattgttgacaagacttcacagtttgtggcgaagaatggtccggaatttgagaagaggattgttctaaataacgctggcaatgcaaaattcaacttcctgaatgcttctgatccttaccatgcctattatcagcaccgtttggctgaagctcgcgcacagaatcagggttctggagagcagcctactcagccagaagacaaagaagcaacccctgctcctaccgctgatgatgctgaggcaactgcaaaacctgacccatcagctcaatttagacctgtcagaaaggttcttgagccacctgaggcagagcaatatactgttcgactccctgaaaggatcacaggtgaagaaatggatatcataaagctganntcacaatttgtggccagaaatgggaantctttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="38271" stop="40043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38571" g_stop="38686" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38687" i_stop="39118" i_length="432">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39119" g_stop="39743" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="741" r_length="625" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-U562869" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U562869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38571" e_stop="38686"/>
          <exon e_start="39119" e_stop="39743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCCCGCTTCTCTGCAAAAATCCCTCGTCGACGGTAATCATCCTAGCAGACAGAAATTTCCGGCCGTTTTTGAACAGAGAGGGATTTGTTTGGGCACTCCATTGTTTAATCAGGTAAATATCTTTTCGTTTGCTTCCTGTAATATGGAATTGAGTATTATTTTTTGGTGCGTTAAGGTTGTTTAGGTTGTTTGTGTTCAAATAAACACATTTAATGTTGTACATCTGTTGGCTTCTTTTTTTTTGGGCGGACTAGTATTTAACTTAATTTTCCTGTCTTTTCTCGTTTGAGATGAGATGAGATGAAATGACACGGAACCAAATTATCAGCATATTATTGGGCTTTCTTGCTTTAATAAGTTGAGGTAAAAGTAGTTTTCTGGATTGCAATTGCTTGAATGACAAGTGAAGTGGTTAGCATTTCATAGGGTTTGCCTTAGGCAAAAAAAAATTGAGGATAGAAACCTTTATTTGGGGTTCTTTTTAGCTGAATGATTGTTTTTTTCTTTTTTCTTTTTCCAATATGGAATCTGCTGCAACTTGCAGAAATAGAAATGTTAGGCATCACACCGATATTGCCCCTTCCGGCACCCCCGTTGGATGGGAATCTGGGACCAACACCTCTAGCTCAGGTGGTAGAGGAACCAAATGATGTTAAGATGGAAGAGAATGAAGAGGAAAACAATAAGGACAAGGTTCCAGCATCTGTTGCAACACATACGAGAACTATTGGTATCATTTATCCCCCTCCTGATATTAGGAGTATTGTTGACAAGACTTCACAGTTTGTGGCGAAGAATGGTCCGGAATTTGAGAAGAGGATTGTTCTAAATAACGCTGGCAATGCAAAATTCAACTTCCTGAATGCTTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGAAGCTCGCGCACAGAATCAGGGTTCTGGAGAGCAGCCTACTCAGCCAGAAGACAAAGAAGCAACCCCTGCTCCTACCGCTGATGATGCTGAGGCAACTGCAAAACCTGACCCATCAGCTCAATTTAGACCTGTCAGAAAGGTTCTTGAGCCACCTGAGGCAGAGCAATATACTGTTCGACTCCCTGAAGGGATCACAGGTGAAGAAATGGATATCATAAAGCTGACATCACAATTTGTGGCCAGAAATGGGAAGTCTTTCTT</genome_strand>
        <mrna_strand>AAGCTCCCGCTTCTCTGCAAAAATCCCTCGTCGACGGTAATCATCCTAGCAGACAGAAATTTCCGGCCGTTTTTGAACAGAGAGGGATTTGTTTGGGCACTCCATTGTTTAATCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGAAATGTTAGGCATCACACCGATATTGCCCCTTCCGGCACCCCCGTTGGATGGGAATCTGGGACCAACACCTCTAGCTCAGGTGGTAGAGGAACCAAATGATGTTAAGATGGAAGAGAATGAAGAGGAAAACAATAAGGACAAGGTTCCAGCATCTGTTGCAACACATACGAGAACTATTGGTATCATTTATCCCCCTCCTGATATTAGGAGTATTGTTGACAAGACTTCACAGTTTGTGGCGAAGAATGGTCCGGAATTTGAGAAGAGGATTGTTCTAAATAACGCTGGCAATGCAAAATTCAACTTCCTGAATGCTTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGAAGCTCGCGCACAGAATCAGGGTTCTGGAGAGCAGCCTACTCAGCCAGAAGACAAAGAAGCAACCCCTGCTCCTACCGCTGATGATGCTGAGGCAACTGCAAAACCTGACCCATCAGCTCAATTTAGACCTGTCAGAAAGGTTCTTGAGCCACCTGAGGCAGAGCAATATACTGTTCGACTCCCTGAAAGGATCACAGGTGAAGAAATGGATATCATAAAGCTGANNTCACAATTTGTGGCCAGAAATGGGAANTCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583168" ref_strand="+" ref_description="SGN-U583168 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|118481265|gb|ABK92580.1| (e_value=3e-52) unknown; (*ATH) AT1G14650.1 (e_value=5e-41)  Symbol: None | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein, similar to SP:Q15459 Splicing factor 3 subunit 1 (Spliceosome associated protein 114) {Homo sapiens}; contains Pfam profiles PF00240: Ubiqui... ; (*SWP) sp|Q8RXF1|SF3A1_ARATH (e_value=4e-40) Probable splicing factor 3 subunit 1 OS=Arabidopsis thaliana GN=At1g14650; ">
      <seq>aggccactacctccacctcctgggcttgcgctgaatattcctaggcctcctaatcgattccagtattccacacctaccatagctggtgctgctccgcctccacctcaacctcctatggttaacatgattcctcaggttcggcccccacctcctcccatgctacaactacaaggtcagcaaaacctcatggtcaatcgtcccccaatgcctccatcaatggctatgagttcgcatacccttactattccaccacctcctggatcacagtttacacctatgggagcacctcggccctttgttccccacccgatgtcccagccgggaatgtctatggtcccgcctcctcctatgccccaaggaatgccaccacctcctccaccagaagaagctcctcctctccctgaagagccagagccgaagaggcaaaagcttgacgagtctgttctcattcctgaagaccagtttttggctcagcattcgggacctgcaaggatcaatgtatctgtgccgaatactgatgaagggaatctcaaaggacaagttctggaaatcactgtgcaatctctgaccgaaaccattgcaagtctgaaagagaagatttctggggagatccagcttcctgcgaacaaacaaaagctgagtggaaaggctggttttctcaaggacaacttgtctcttgcatactataatgttgcttctggagaaacactcggcctctctctgagagaacgtggtgggagaaagagatgaatgaggatttatttgacatggctttccaagattttggcatgttggcgatcatcgatgatgacaacaggaagcttactagttctattcctttaagatgcaatgactgtaggttatgttttactaatttgtgtgtcttaacatgtgcagttgctccaccctctaactagagcccagttgttattttgttgtatcttttgagtccaaggccattttgggattagaacttttctgatgtcaaacattccttacaattttagaggctttccttggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="40492" stop="42376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40792" g_stop="41271" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41272" i_stop="41367" i_length="96">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41368" g_stop="41667" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="780" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41668" i_stop="41833" i_length="166">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41834" g_stop="42076" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="1023" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-U583168" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1023</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40792" e_stop="41271"/>
          <exon e_start="41368" e_stop="41667"/>
          <exon e_start="41834" e_stop="42076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCACTACCTCCACCTCCTGGGCTTGCGCTGAATATTCCTAGGCCTCCTAATACATTCCAGTATTCCACACCTACCATAGCTGGTGCTGCTCCGCCTCCACCTCAACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCTACAACTACAAGGTCAGCAAAACCTCATGGTCAATCGTCCCCCAATGCCTCCATCAATGGCTATGAGTTCGCATACCCTTACTATTCCACCACCTCCTGGATCACAGTTTACACCTATGGGAGCACCTCGGCCCTTTGTTCCCCACCCGATGTCCCAGCCGGGAATGTCTATGGTCCCGCCTCCTCCTATGCCCCAAGGAATGCCACCACCTCCTCCACCAGAAGAAGCTCCTCCTCTCCCTGAAGAGCCAGAGCCGAAGAGGCAAAAGCTTGACGAGTCTGTTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCATTCGGTGAGGATAGCTTTAAAAGAACACTTTTACATAATTGTCTGTTTCATGTTCTCTTACATCCATGGAAATTTTATTTCCTGCTGGGTTATATTGCAGGGACCTGCAAGGATCAATGTATCTGTGCCGAATACTGATGAAGGGAATCTCAAAGGACAAGTTCTGGAAATCACTGTGCAATCTCTGACCGAAACCATTGCAAGTCTGAAAGAGAAGATTTCTGGGGAGATCCAGCTTCCTGCGAACAAACAAAAGCTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCATACTATAATGTTGCTTCTGGAGAAACACTCGGCCTCTCTCTGAGAGAACGTGGTGGGAGAAAGAGATGAATGAGGATTTATTTGACATGGCTTTCCAAGGTTTATTTTGCAACTATTTGGCATACTAATCCTTGTTATGAATTTAAAGAACTCTCCTTTCTTCTTTCATGTTATTTTGGAGATTATACTGGTCTTGTACTTCTAGATTTTCTTTCTGCAATTTAATCAATTTTATCTTTCTGATGGTTGTGGGTATCTACTACAGATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTCTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAA</genome_strand>
        <mrna_strand>AGGCCACTACCTCCACCTCCTGGGCTTGCGCTGAATATTCCTAGGCCTCCTAATCGATTCCAGTATTCCACACCTACCATAGCTGGTGCTGCTCCGCCTCCACCTCAACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCTACAACTACAAGGTCAGCAAAACCTCATGGTCAATCGTCCCCCAATGCCTCCATCAATGGCTATGAGTTCGCATACCCTTACTATTCCACCACCTCCTGGATCACAGTTTACACCTATGGGAGCACCTCGGCCCTTTGTTCCCCACCCGATGTCCCAGCCGGGAATGTCTATGGTCCCGCCTCCTCCTATGCCCCAAGGAATGCCACCACCTCCTCCACCAGAAGAAGCTCCTCCTCTCCCTGAAGAGCCAGAGCCGAAGAGGCAAAAGCTTGACGAGTCTGTTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCATTCG................................................................................................GGACCTGCAAGGATCAATGTATCTGTGCCGAATACTGATGAAGGGAATCTCAAAGGACAAGTTCTGGAAATCACTGTGCAATCTCTGACCGAAACCATTGCAAGTCTGAAAGAGAAGATTTCTGGGGAGATCCAGCTTCCTGCGAACAAACAAAAGCTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCATACTATAATGTTGCTTCTGGAGAAACACTCGGCCTCTCTCTGAGAGAACGTGGTGGGAGAAAGAGATGAATGAGGATTTATTTGACATGGCTTTCCAAG......................................................................................................................................................................ATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTTTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583169" ref_strand="+" ref_description="SGN-U583169 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>atttaaagaactctcctttcttctttcatgttattttggagattatactggtcttgtacttctagattttctttctgcaatttaatcaattttatctttctgatggttgtgggtatctactacagattttggcatgttggcgatcatcgatgatgacaacaggaagcttactagttctattcctttaagatgcaatgactgtaggttatgttttactaatttgtgtgtcttaacatgtgcagttgctccaccctctaactagagcccagttgttattttgttgtatcttttgagtccaaggccattttgggattagaacttttctgatgtcaaacattccttacaattttagaggctttccttggcaattaatatttcaaactcttctgtggatttaggacctatttctgtagaagatgtgtgtgtcgtgtttggcgatgcttgtcccaagcacacctgcctcatatgtggtgcgtttttggggcacttgagcccctttgtgcaagtcctatgtagcttcattcttttcatttgcttttgtgtagtctgctatctggagaaagtggctaaggtttctctgatgcctttattttatcaacacagctttacccctgttagaggctgtgatggttgtattatgaggttctatcttggtagcaaaagcagtttgtccgtgcttttggaggaagttgcagattgatgattgataaatgattcatatgtgatctttgggaatgccagataatgtgccgccagtagtttttatttgttaatgggagttggtttgttagcttatatatgctttgtgtgtttgtcctgtttgtatcttgatccaccccatttttatggggtccaattatcttaactgcactttcaactgatgatgacagaactagtgacatttcacagctaggaatgtgatcgacatactttttaagaaactgctttctatgggatcatgttctggccatgtatttctatcttagcagctttcccttaataagcagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="41409" stop="43113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41709" g_stop="42374" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42375" i_stop="42469" i_length="95">
            <donor d_prob="0.858" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42470" g_stop="42813" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="1010" r_length="344" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-U583169" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1010</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41709" e_stop="42374"/>
          <exon e_start="42470" e_stop="42813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAAAGAACTCTCCTTTCTTCTTTCATGTTATTTTGGAGATTATACTGGTCTTGTACTTCTAGATTTTCTTTCTGCAATTTAATCAATTTTATCTTTCTGATGGTTGTGGGTATCTACTACAGATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTCTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAGATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATGTGGTGCGTTTTTGGGGCACTTGAGCCCCTTTGTGCAAGTCCTATGTAGCTTCATTCTTTTCATTTGCTTTTGTGTAGTCTGCTATCTGGAGAAAGTGGCTAAGGTTTCTCTGATGCCTTTATTTTATCAACACAGCTTTACCCCTGTTAGAGGCTGTGATGGTTGTATTATGAGGTTCTATCTTGGTAGCAAAAGCAGGTATTGTTTTTGCTCTTTTTATTGGTGTGTACGGTTTATTTTTTGATGAGAAGCTGTTGGCAGACATCAAAGATTCTACACTTGCCCTTTTGCAGTTTGTCCGTGCTTTTGGAGGAGGTTGCAGATTGATGATTGATAAATGATTCATATGTGATCTTTGGGAATGCCAGATAATGTGCCGCCAGTAGTTTTTATTTGTTAATGGGAGTTGGTTTGTTAGCTTATATATGCTTTGTGTGTTTGTCCTGTTTGTATCTTGATCCACCCCATTTTTATGGGGTCCAATTATCTTAACTGCACTTTCAACTGATGATGACAGAACTAGTGACATTTCACAGCTAGGAATGTGATCGACATACTTTTTAAGAAACTGCTTTCTATGGGATCATGTTCTGGCCATGTATTTCTATCTTTGCAGCTTTCCCTTAATAAGCAGAAG</genome_strand>
        <mrna_strand>ATTTAAAGAACTCTCCTTTCTTCTTTCATGTTATTTTGGAGATTATACTGGTCTTGTACTTCTAGATTTTCTTTCTGCAATTTAATCAATTTTATCTTTCTGATGGTTGTGGGTATCTACTACAGATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTTTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAGATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATGTGGTGCGTTTTTGGGGCACTTGAGCCCCTTTGTGCAAGTCCTATGTAGCTTCATTCTTTTCATTTGCTTTTGTGTAGTCTGCTATCTGGAGAAAGTGGCTAAGGTTTCTCTGATGCCTTTATTTTATCAACACAGCTTTACCCCTGTTAGAGGCTGTGATGGTTGTATTATGAGGTTCTATCTTGGTAGCAAAAGCAG...............................................................................................TTTGTCCGTGCTTTTGGAGGAAGTTGCAGATTGATGATTGATAAATGATTCATATGTGATCTTTGGGAATGCCAGATAATGTGCCGCCAGTAGTTTTTATTTGTTAATGGGAGTTGGTTTGTTAGCTTATATATGCTTTGTGTGTTTGTCCTGTTTGTATCTTGATCCACCCCATTTTTATGGGGTCCAATTATCTTAACTGCACTTTCAACTGATGATGACAGAACTAGTGACATTTCACAGCTAGGAATGTGATCGACATACTTTTTAAGAAACTGCTTTCTATGGGATCATGTTCTGGCCATGTATTTCTATCTTAGCAGCTTTCCCTTAATAAGCAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581876" ref_strand="+" ref_description="SGN-U581876 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157338568|emb|CAO41919.1| (e_value=0) unnamed; (*ATH) AT1G30900.1 (e_value=0) | Symbol: None | vacuolar sorting receptor, putative, similar to BP-80 vacuolar sorting receptor (Pisum sativum) GI:1737222 | chr1:10997256-11000524 FORWARD | Aliases: F17F8.23; (*SWP) sp|Q9FYH7|VSR6_ARATH (e_value=0) Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6; ">
      <seq>gacacaaaaactccaaaaagtctcctctgttcacagagtcttctcttgacactttcttgatttttggccccttatgtaatccatctgtttctttctcctctttacacctcttacaaactttttgaaaccccaaacattacaaattgtaccaatactaaatatgcttgtacctttacactctcctgcaaacatggctgctctgttttttcgacttctgtttttttccttgatagtatcgaatgttgtgctagttcaggcaaggtttatagttgagaagaacagtataagtgttctgtctccttattcaatgcactcgaagcatgatgcctctattggtaattttggtgtccctgattatggtggttctttagttggaactgttgtttatcctagtaaaggtgctaatggctgcgctgaatttgatggtgataaacccttcaaatctaagggtcatcgtcctaatatccttcttcttgatcgtggagactgctattttgctttgaaggtatggaatgggcaacaagctggagcagctgcagtactagttgctgatagtatagatgaggctcttataactatggattctcctgaagaaagtacggatgccaatggatacatcgagaagattggtatcccgtcagcattgattgaaaagtcgtttggtgacgcattgaaagaagctcttaagaagggagaggaagttgtgatcaaaatggattggacggagtcaatgcctcatcctgatcagcgagttgagtatgaattgtggactaatagcaacgatgagtgtggggttcgttgtgatgagcagatgaatttcatcaagaacttcaaaggacatgctcaaatacttgagaagggcggttatactatgttcacgcctcattatattacttggtactgtcctgaagctttcattcttagcagccagtgcaaatctcagtgcattaatcacgggagatattgcgctcctgatccggagcaggactttggggaggggtaccaagggaaggatgttgtctttgagaacttgaggcagctttgcgtgcatagagttgcaaatgagagtagccgttcttgggtttggtgggactatgtgacggattttcatattagatgttcaatgaagcaaaagcgatacagcaaagaatgtgctgaggaggtcatgaaatcacttgatctaccggttgacaagataaagaaatgcatgggcgatccagaggctaatgttgaaaatgatgtgttgaagactgagcaagacctccaggttggccgaggacctcgtggagatgtgacaatcttaccaacaatggtcatcaatgatattcaatatcgagggaaattggagaggactgctgttttaaaagccatatgtgctggttttaaggaaacaactgaaccttcgatatgtttaagtggagatcttgaaacaaaccagtgcctagaaaggaacggtggctgttggcgggatcctaaatctaacataactgcctgcaaggatacatatagaggaagagtttgtgagtgccctttggtgaacggcgttcagtataaaggagatggatacacatcttgtgaagccgttggacctggaaggtgttcggtaaacaacggaggatgctggtcagaaaccagaaatgggcaaacatattcagcatgttcagagggtgaactatcaggctgtaagtgtccgtatggttttaaaggggatggccataaatgtgaagatgtagatgaatgcaaggaaggacttgtttgtcagtgtgatggctgcagctgtaaggacacatggggtggattcgagtgtaagtgcaaaggaaatcaactctacataatggagcatgatacttgtatagaaagacactcatcaaagatcggacgggtccttatgttctctttcctagccattgcagtgggggctggtttagctggttacaccttttacaagtatagacttcggtcatacatggactcagagattatggccatcatgtcgcagtacatgcctctcgacaaccacaatcagaatcaggttgtccatcatgaagctgaacctctacaacagagctcggtatgatgagtatttctgggagctaatgtatgatttcccatccttctcttggatacttttcgacttatggatattgaaggagatgaagaacagagtcatatttagaggaaaaccagatacttgatgctggtttgccaactctctagtccataaagacctggcttttcccatttgtgtataatagagttttgagatgtaaatgcagggttcacttgtgttaaaaggacatatagaacaaaatatacttgggaaggcaacccatggccttttacattattcagcaattgcatccttcttaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="47794" stop="43061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47495" g_stop="47011" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47010" i_stop="46468" i_length="543">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46467" g_stop="45775" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="1178" r_length="693" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45774" i_stop="45681" i_length="94">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45680" g_stop="45592" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1179" r_stop="1267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45591" i_stop="45450" i_length="142">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45449" g_stop="45380" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1268" r_stop="1337" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45379" i_stop="45230" i_length="150">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45229" g_stop="45146" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1338" r_stop="1421" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45145" i_stop="45046" i_length="100">
            <donor d_prob="0.515" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45045" g_stop="44969" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1422" r_stop="1498" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44968" i_stop="44852" i_length="117">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44851" g_stop="44770" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1499" r_stop="1580" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44769" i_stop="44633" i_length="137">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44632" g_stop="44550" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1581" r_stop="1663" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="44549" i_stop="44464" i_length="86">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="44463" g_stop="44400" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1664" r_stop="1727" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="44399" i_stop="44301" i_length="99">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="44300" g_stop="44172" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1728" r_stop="1856" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="44171" i_stop="43965" i_length="207">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="43964" g_stop="43861" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1857" r_stop="1960" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="43860" i_stop="43774" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="43773" g_stop="43361" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1961" r_stop="2373" r_length="413" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-U581876" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47495" e_stop="47011"/>
          <exon e_start="46467" e_stop="45775"/>
          <exon e_start="45680" e_stop="45592"/>
          <exon e_start="45449" e_stop="45380"/>
          <exon e_start="45229" e_stop="45146"/>
          <exon e_start="45045" e_stop="44969"/>
          <exon e_start="44851" e_stop="44770"/>
          <exon e_start="44632" e_stop="44550"/>
          <exon e_start="44463" e_stop="44400"/>
          <exon e_start="44300" e_stop="44172"/>
          <exon e_start="43964" e_stop="43861"/>
          <exon e_start="43773" e_stop="43361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACAAAAACTCCAAAAAGTCTCCTCTGTTCACAGAGTCTTCTCTTGACACTTTCTTGATTTTTGGCCCCTTATGTAATCCATCTGTTTCTTTCTCCTCTTTACACCTCTTACAAACTTTTTGAAACCCCAAACATTACAAATTGTACCAATACTAAATATGCTTGTACCTTTACACTCTCCTGCAAACATGGCTGCTCTGTTTTTTCGACTTCTGTTTTTTTCCTTGATAGTATCGAATGTTGTGCTAGTTCAGGCAAGGTTTATAGTTGAGAAGAACAGTATAAGTGTTCTGTCTCCTTATTCAATGCACTCGAAGCATGATGCCTCTATTGGTAATTTTGGTGTCCCTGATTATGGTGGTTCTTTAGTTGGAACTGTTGTTTATCCTAGTAAAGGTGCTAATGGCTGCGCTGAATTTGATGGTGATAAACCCTTCAAATCTAAGGGTCATCGTCCTAATATCCTTCTTCTTGATCGTGGAGGTAATTTTTATTTTAATTTCGAAAAATTAAAAGATCAAATTTTTGGTTGATTTGAAGTTTTTGATTTTTGATTTGATGTAATGTTGTCTCTGTATCTAATCACTCTGCTAGAGGTTTCTTCATTTCCCATAGCTCGAGAAACGGAATAATTTAAAGTTTATGAGTTTGTGATATTAATAACAAGTATTAGTAATTAATTTTTTCTTGATTACATATATAGAGTTTAAATTCTAAATCTTAGAGGTTATTGCTGATGTTTGAGTATCTATTGGATTAAAAAGGAGCTAAATTCTATTTCTAATTAAGTTGGAGAAACTTACACTTCTTTTAGGTTTTGCTTCTAAGTGAAGTGTTAGAGACTTATGAGTTATTTTACTGTTTCTTGGAGTTGAAGGGAGTTTCGGAATCTATTTCTTTAGTTGAGTAGCCACTATCAACTATACGGATATTCGTTTTTCTATGCAGAATTTTACTGGAATGTTTGACGTATTAGATGAAGTTATAAGTTTATGATAAATATGTAAAACAATTTTTTTTTTCCAGACTGCTATTTTGCTTTGAAGGTATGGAATGGGCAACAAGCTGGAGCAGCTGCAGTACTAGTTGCTGATAGTATAGATGAGGCTCTTATAACTATGGATTCTCCTGAAGAAAGTACGGATGCCAATGGATACATCGAGAAGATTGGTATCCCGTCAGCATTGATTGAAAAGTCGTTTGGTGACGCATTGAAAGAAGCTCTTAAGAAGGGAGAGGAAGTTGTGATCAAAATGGATTGGACGGAGTCAATGCCTCATCCTGATCAGCGAGTTGAGTATGAATTGTGGACTAATAGCAACGATGAGTGTGGGGTTCGTTGTGATGAGCAGATGAATTTCATCAAGAACTTCAAAGGACATGCTCAAATACTTGAGAAGGGCGGTTATACTATGTTCACGCCTCATTATATTACTTGGTACTGTCCTGAAGCTTTCATTCTTAGCAGCCAGTGCAAATCTCAGTGCATTAATCACGGGAGATATTGCGCTCCTGATCCGGAGCAGGACTTTGGGGAGGGGTACCAAGGGAAGGATGTTGTCTTTGAGAACTTGAGGCAGCTTTGCGTGCATAGAGTTGCAAATGAGAGTAGCCGTTCTTGGGTTTGGTGGGACTATGTGACGGATTTTCATATTAGATGTTCAATGAAGCAAAAGCGATACAGCAAAGAATGTGCTGAGGAGGTCATGAAATCACTTGGTATCTCCCTTTCGAGTTCTATTTTTTTTGGTCATTATTGATAATATATACTGTTCTCAGTAGTTACTCTTTGAGTTTTTATTTGTTTCATCAGATCTACCGGTTGACAAGATAAAGAAATGCATGGGCGATCCAGAGGCTAATGTTGAAAATGATGTGTTGAAGACTGAGCAAGACCTCCAGGTATCTTCATTTCTGAAAATCTCTAATCATTTCATAATTTGTGACATAATTGACCATTTTGTGATTTTACAGATATAAATATCTATGTTATCATGAATATATTACATATAAACATAACTTCTTCTTTTGTTTCCCTTAAAAGGTTGGCCGAGGACCTCGTGGAGATGTGACAATCTTACCAACAATGGTCATCAATGATATTCAATATCGAGGTATGATGTAGACGTAGAAAAATAAGTTCAACATAAACTAACTAATTGCTTATATTTGTAGCTTTCTTATTGATAAATCTTCAGGGGGATATAATATTCTCCTCGGATCACTCTTTGAGTACTCAAGTTCTTTTTTACTGTTTCTTTAAGGGAAATTGGAGAGGACTGCTGTTTTAAAAGCCATATGTGCTGGTTTTAAGGAAACAACTGAACCTTCGATATGTTTAAGTGGAGGTTTGACACCATTCCTTTCTTCAGGATCTTGACTACCAGAGTTATTGCATAAAATTGAAAGAGTTAGCTAATTGTTGCTTATATGCTCAATGAACAATAGATCTTGAAACAAACCAGTGCCTAGAAAGGAACGGTGGCTGTTGGCGGGATCCTAAATCTAACATAACTGCCTGCAAGGTATGGACAATAATGCTCTTTGAAACCTCTATGAAGTTATCATCTTCCTTCGTGGAAAACTATTGTGGTATATATAACAACCTTTTACATGAACCTCGTGCTTGTGTTGTTCTAAAGGATACATATAGAGGAAGAGTTTGTGAGTGCCCTTTGGTGAACGGCGTTCAGTATAAAGGAGATGGATACACATCTTGTGAAGGTAAGGAAGTGTTGCTTCTTGTTCTTTAGTTATACGTCCATTAATTGACAATTGGCCTATCGAATTGCTTGTCACTCTTGAGAATTGGATGACTTAAATATTTTTTCCCCTCTAACTGGCTTGCAATCGATTGACAGCCGTTGGACCTGGAAGGTGTTCGGTAAACAACGGAGGATGCTGGTCAGAAACCAGAAATGGGCAAACATATTCAGCATGTTCAGTTCAGTAAAACCAATACTTTCTTTAACTGTGTTTAGTCAAGATTAAACCATTGTATGTGCTAAAATCTGGTTTAACGCAAAGCAGGAGGGTGAACTATCAGGCTGTAAGTGTCCGTATGGTTTTAAAGGGGATGGCCATAAATGTGAAGGTATGTAACATTCTTGTAGATCCTTTCGTGACACTAAAATTTTCTCGTGTTTGTTAAGTGCTGATTCAAACGTCGTTCCTTTCAACAACAAAAAATCAGATGTAGATGAATGCAAGGAAGGACTTGTTTGTCAGTGTGATGGCTGCAGCTGTAAGGACACATGGGGTGGATTCGAGTGTAAGTGCAAAGGAAATCAACTCTACATAATGGAGCATGATACTTGTATAGGTAAGAAAAAGTTGATTCAGCACTAAAAACAAATGTTGTTTATCTTTTAATCTACCAGAGCTTCAACTTCTAAAGTTAACCATAAACTACTGCCTCCGATAAAAACTTGCATTTTGCTAAGATGCAAAGCATCGTTTTCACGATAATAATATATCATGACATAACAAGATGAACTTACAATATTACCTTTGTTTCTTAAATGTACAGAAAGACACTCATCAAAGATCGGACGGGTCCTTATGTTCTCTTTCCTAGCCATTGCAGTGGGGGCTGGTTTAGCTGGTTACACCTTTTACAAGTATAGACTTCGGGTAAGCATATCGAGTAGTTATTACAATCTTAAGAGTCATACTTACGCTACAACAACCATTATGCTAACTATTGGTAAATTTTTATAGTCATACATGGACTCAGAGATTATGGCCATCATGTCGCAGTACATGCCTCTCGACAACCACAATCAGAATCAGGTTGTCCATCATGAAGCTGAACCTCTACAACAGAGCTCGGTATGATGAGTATTTCTGGGAGCTAATGTATGATTTCCCATCCTTCTCTTGGATACTTTTCGACTTATGGATATTGAAGGAGATGAAGAACAGAGTCATATTTAGAGGAAAACCAGATACTTGATGCTGGTTTGCCAACTCTCTAGTCCATAAAGACCTGGCTTTTCCCATTTGTGTATAATAGAGTTTTGAGATGTAAATGCAGGGTTCACTTGTGTTAAAAGGACATATAGAACAAAATATACTTGCGAAGGCAACCCATGGCCTTTTACATTATTCAGCAATTGCATCCTTCTTAAATC</genome_strand>
        <mrna_strand>GACACAAAAACTCCAAAAAGTCTCCTCTGTTCACAGAGTCTTCTCTTGACACTTTCTTGATTTTTGGCCCCTTATGTAATCCATCTGTTTCTTTCTCCTCTTTACACCTCTTACAAACTTTTTGAAACCCCAAACATTACAAATTGTACCAATACTAAATATGCTTGTACCTTTACACTCTCCTGCAAACATGGCTGCTCTGTTTTTTCGACTTCTGTTTTTTTCCTTGATAGTATCGAATGTTGTGCTAGTTCAGGCAAGGTTTATAGTTGAGAAGAACAGTATAAGTGTTCTGTCTCCTTATTCAATGCACTCGAAGCATGATGCCTCTATTGGTAATTTTGGTGTCCCTGATTATGGTGGTTCTTTAGTTGGAACTGTTGTTTATCCTAGTAAAGGTGCTAATGGCTGCGCTGAATTTGATGGTGATAAACCCTTCAAATCTAAGGGTCATCGTCCTAATATCCTTCTTCTTGATCGTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTATTTTGCTTTGAAGGTATGGAATGGGCAACAAGCTGGAGCAGCTGCAGTACTAGTTGCTGATAGTATAGATGAGGCTCTTATAACTATGGATTCTCCTGAAGAAAGTACGGATGCCAATGGATACATCGAGAAGATTGGTATCCCGTCAGCATTGATTGAAAAGTCGTTTGGTGACGCATTGAAAGAAGCTCTTAAGAAGGGAGAGGAAGTTGTGATCAAAATGGATTGGACGGAGTCAATGCCTCATCCTGATCAGCGAGTTGAGTATGAATTGTGGACTAATAGCAACGATGAGTGTGGGGTTCGTTGTGATGAGCAGATGAATTTCATCAAGAACTTCAAAGGACATGCTCAAATACTTGAGAAGGGCGGTTATACTATGTTCACGCCTCATTATATTACTTGGTACTGTCCTGAAGCTTTCATTCTTAGCAGCCAGTGCAAATCTCAGTGCATTAATCACGGGAGATATTGCGCTCCTGATCCGGAGCAGGACTTTGGGGAGGGGTACCAAGGGAAGGATGTTGTCTTTGAGAACTTGAGGCAGCTTTGCGTGCATAGAGTTGCAAATGAGAGTAGCCGTTCTTGGGTTTGGTGGGACTATGTGACGGATTTTCATATTAGATGTTCAATGAAGCAAAAGCGATACAGCAAAGAATGTGCTGAGGAGGTCATGAAATCACTTG..............................................................................................ATCTACCGGTTGACAAGATAAAGAAATGCATGGGCGATCCAGAGGCTAATGTTGAAAATGATGTGTTGAAGACTGAGCAAGACCTCCAG..............................................................................................................................................GTTGGCCGAGGACCTCGTGGAGATGTGACAATCTTACCAACAATGGTCATCAATGATATTCAATATCGAG......................................................................................................................................................GGAAATTGGAGAGGACTGCTGTTTTAAAAGCCATATGTGCTGGTTTTAAGGAAACAACTGAACCTTCGATATGTTTAAGTGGAG....................................................................................................ATCTTGAAACAAACCAGTGCCTAGAAAGGAACGGTGGCTGTTGGCGGGATCCTAAATCTAACATAACTGCCTGCAAG.....................................................................................................................GATACATATAGAGGAAGAGTTTGTGAGTGCCCTTTGGTGAACGGCGTTCAGTATAAAGGAGATGGATACACATCTTGTGAAG.........................................................................................................................................CCGTTGGACCTGGAAGGTGTTCGGTAAACAACGGAGGATGCTGGTCAGAAACCAGAAATGGGCAAACATATTCAGCATGTTCA......................................................................................GAGGGTGAACTATCAGGCTGTAAGTGTCCGTATGGTTTTAAAGGGGATGGCCATAAATGTGAAG...................................................................................................ATGTAGATGAATGCAAGGAAGGACTTGTTTGTCAGTGTGATGGCTGCAGCTGTAAGGACACATGGGGTGGATTCGAGTGTAAGTGCAAAGGAAATCAACTCTACATAATGGAGCATGATACTTGTATAG...............................................................................................................................................................................................................AAAGACACTCATCAAAGATCGGACGGGTCCTTATGTTCTCTTTCCTAGCCATTGCAGTGGGGGCTGGTTTAGCTGGTTACACCTTTTACAAGTATAGACTTCGG.......................................................................................TCATACATGGACTCAGAGATTATGGCCATCATGTCGCAGTACATGCCTCTCGACAACCACAATCAGAATCAGGTTGTCCATCATGAAGCTGAACCTCTACAACAGAGCTCGGTATGATGAGTATTTCTGGGAGCTAATGTATGATTTCCCATCCTTCTCTTGGATACTTTTCGACTTATGGATATTGAAGGAGATGAAGAACAGAGTCATATTTAGAGGAAAACCAGATACTTGATGCTGGTTTGCCAACTCTCTAGTCCATAAAGACCTGGCTTTTCCCATTTGTGTATAATAGAGTTTTGAGATGTAAATGCAGGGTTCACTTGTGTTAAAAGGACATATAGAACAAAATATACTTGGGAAGGCAACCCATGGCCTTTTACATTATTCAGCAATTGCATCCTTCTTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580600" ref_strand="+" ref_description="SGN-U580600 Tomato 200607#2 [53 ESTs aligned] (*GB) gi|157267554|gb|ABV26545.1| (e_value=1e-144) apyrase; (*ATH) AT5G18280.1 (e_value=1e-124) | Symbol: None | apyrase (APY2), identical to apyrase GI:6006801, GI:7672685 from (Arabidopsis thaliana) | chr5:6050566-6054343 REVERSE | Aliases: MRG7.24, MRG7_24; (*SWP) sp|P80595|APY_SOLTU (e_value=7e-146) Apyrase OS=Solanum tuberosum GN=RROP1; ">
      <seq>atacaaatgcaaaatatcagtacaatttgcgtgtataaagataataaagctgcagtactattgttgataactaaagcagagatcgaaaatgcagaagcataatattagtaatgtttataacttgttcaacattatgttgttgatacttgttgggttgccattgagctcgcatgccaatgattattcggagaaatatgcagtgatatttgacgctggaagcactggtagcagagttcatgtctttcgttttaactcaaatttggatctcatcaatatcggcaatgatcttgaactcttcttggcgataaaaccaggtctgagttcatatgcagatgatccaaaggcagctgcaaattctctaaagccccttcttgagaaagctgaagctgttattcctaagaatttacagtctcaaacccctattaaagttggggcaactgcagggctgaggttattaaagggtgattcatctgaaaagattctgcaagcagtaagagatatgctgaaaaatgaaactactctgagttacaaggatgaatgggtctctgttctcgaaggaactctagaaggttcttatttttgggttgctttgaactatttgtatgggaatttgggcaaaaattacccagacaccattgctacaattgatcttggaggtggatcagttcaaattgcttatgctgtctcaaaacaaagtgctataaatgctccaaagttaccaaatggagacgcttatgtccaacaaaaagcacttcttggaactaattattacctctatgttcacagttttctaaattatggactattagcagctcgagctgatatcttgaaggcttctaaaaattacactagtccatgcatcgtggaagggcacaatgggtactacacatataatggagtatcttataaagctgcatcacgaaaacaaggtccaaatatcagaagatgtaaagcaataattagaaaattgcttcagattgatgcaccttgcaatcacaaaaattgttcatttgctgggatttggaatggtggtggtggagctggaaccaaaaatctctatatctcttcatttttctatgattatgcttctacagttggtatagtggatccaaaagaggcctatggtataactcagccaatacaatactataaagcagcgacgctggcttgtaagactaagaagcaaaacatgaaatcggtattccctaacattaacgataaggacataccctttatctgcatggatttattatatgaatacactttgctggtaaatggatttggtattgatccaataagaaagattacagtggtgcatcaagttaattacaaaaatcaccttgttgaagctgcatggccattaggctctgctattgatgctgtctcatccacaacatcagaaaatatgatttcatatgttgggaggataagttattagtgttaatttcatgtttacttaaggactttgttgatttgttttcatgtgttaaaaattgattagagcaatttctcctatggtcgatttagtaggagctgcagctgtttctattgattctccttatttggtatttcaaaaataaatggtgtttttctttttaattttcaactttaaaatggagatttatgtaagcaatcaaaagagattatcaaaatcaagatttgcttgtttatatataaggcagtaagtttagtattttctcaattatttcttgttgtaatatagttatttaattttcacaatttcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="59236" stop="54609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58936" g_stop="58858" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58857" i_stop="58778" i_length="80">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58777" g_stop="58553" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="304" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57358" g_stop="57230" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="433" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57091" g_stop="57035" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="490" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56894" g_stop="56802" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="583" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56553" g_stop="56351" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="786" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="56232" g_stop="56141" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="878" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55957" g_stop="55743" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="1093" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="55742" i_stop="55664" i_length="79">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="55663" g_stop="55474" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1094" r_stop="1283" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="55473" i_stop="55375" i_length="99">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="55374" g_stop="54909" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1284" r_stop="1749" r_length="466" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-U580600" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58936" e_stop="58858"/>
          <exon e_start="58777" e_stop="58553"/>
          <exon e_start="57358" e_stop="57230"/>
          <exon e_start="57091" e_stop="57035"/>
          <exon e_start="56894" e_stop="56802"/>
          <exon e_start="56553" e_stop="56351"/>
          <exon e_start="56232" e_stop="56141"/>
          <exon e_start="55957" e_stop="55743"/>
          <exon e_start="55663" e_stop="55474"/>
          <exon e_start="55374" e_stop="54909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAATGCAAAATATCAGTACAATTTGCGTGTATAAAGATAATAAAGCTGCAGTACTATTGTTGATAACTAAAGCAGGTACCATTTCTCTCTTTCTTCCTTATCTTGTGCATTGCTTTGTTTTAAATCAAACATTAATTGCTTTCATTTTTGTGCAGAGATCGAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCGGTACCTACTTAATACAACACTACTACACTTTTTAGCTACAGTATGCCTTGTTTTATTTTGACTTCATATAAAGAAATTAAAAAAAAAAAAGACTTTGAGGGTACATTTGGTAGAGAGGAAAATATTTTTTAAAAATAAACTTAAACTTATTTTCTTTTAGGATAAGAGTGGTAGCGGGTAAGTGGGAGAACGATGATACGGTGAAAAAAAAATTAAAATTTTGAAGTTGAAAATATTTTTTAAAAAGTAATTTTTTTTTTTTAGGGATAGAGGGTGGGGGCTGGTAGTTTCATTTTGTTGTCTTAATACCCTTACCCCTTCTGTTGACACTGATTCTTGTGGATCCATTTGGTTTCGAACCTCATCATTATTCGATTCACTCCTGTTTTTCTGGACCATTTTTTTTCCTTTTGATCTTGTATTGTAGGAATGAGATGTCAGCTTAAGCACAAATCAACCACCTTAATTTAAATGTTGGTAGAGGGTGGGTTGGGGACTGATAAGGTGTGGTGGGTAGGGAGAGGTTAGAAGGGAGTTTTGAAAACATTTTTCTTAAGTTTTTTTTGAAGGGAGTCATTTTTTTTAAATTTTAAAAAAAATAAGTTAATTTGAAAAACATTTAACCAATCAACCTTTTTCATTTTCCTTCCTACCAATCACGCCCTGAATGTTGTAAACTTTGTAGTCATACATTTGTTGTGCTAATAAGAGAAATAGACATTCTTGTTAGAATCCTAGGATAACCTATATCCGCTACAATTTTTGCTCCCGTCTTTTCCCTTTGAGTGAGAACTCTGTGATGAGTATCTTGTTTGCACTGAGTAAACCTGCAACAGTGTAACCTCTGCCTGTCTGGCCCAGCCCATATGGATAAGCATTCTATGGTGAGCATTTTGTGCGCATTAGGTAAATCCCTATTGTGTAATAATCTGTATATTACGGTATAAATATGTAAGCTGCATTGGCAAGACCTATGTAACAGACTCAACTCAGATATTGAGGAGGCATCGATTTCGAATCATACGTGTGGATAACCACCCTCCAAATCAATTGAATGGACAAATAAACCTTTTTCGTAAAACAAATTAAATAGGAAAATATAATAAACGAATCGAATAGAATGAACTAGTAGTAATTTTGCACTGTTATTACCAAAGATCTAGTTATAAGTGAGTTTTCTTTTTACCTTTGCAGATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGGGTCAGTTAATAATTAACTATTTATATCACTCTTAATTCTGATTAAGATTCATAATTATATTATTCCATATGATTGAGGAAAAAAAAGTACTATTAATATTAATTAACATTATTCTTGCGCTAATCTTAATTGATACAGGCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCAGTACATTTTTTTTATCCCTTCTTACTTTCACTAATTGGAAAATTAATCTTAATTATTGTATTATTTGATAATCCTTCATCGTACAAATTAATCTCACTGGTTTAATTATTGTTTTTTCTTATTATAATTCCTTGATTAAGGTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGGGTAAGTTTAATCATCAAACGTTCTTAATTAACTTCACAAAACAAATAATTTTGTGATTTTTCTCTTATAATTTGGTAAATTACATTTGGTGTTTATACATCGAAACTAAACAATTAAAAAGCCTATTCTTGGTTGAGTTTGTTGTACGAGACTTGCCTAATACAATATACTTTTTGACTATGATTTATTCATTTGCAATCAATTATTAAAATTAGAATGACTTTATTTTTTTCTTAAAAAAAATGCAGGTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAGGTTTCATTTCTATTATTATTATATATATTTATTTTATAGTATGCATTAATGTTTTCTAATCAATAAATTTTATTTAATTTCTCAAAATCATAATTAATTAACAACTTTATTGTTGTAGTTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATGGTACTTTCCTTTAACAAATACTTGAGCTGATATCTTTTTTTTATACCCTCTCTAGCAACTCCCACCCCCATTGCTCCTTTGGTGACTCGAACTCGAAAAAGATGCTTACCATCTGAGGAACTCCCTCTCGTCGTCTGTTGTTATTCCTTAATAAAATAGTTACAATTTTTTTTTCCCTTGAAGGGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACAGTAAGTACATCATATTATAAAAATGAAATAAGTATATACATATTTATTCACGATTCGATTAATATTTTAATTAATGTAGGTTGGTATAGTGGATCCAAAAGAGGCCTATGGTATAACTCAGCCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTGGTAAGTTTATTTAATTTCTCTTCTTTTTTTTTTTAGCTAATATTCCTTAATTATACCTCAAATTTTTACATTTTAATTAATTAATGAATGAATAAACAGGTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTAATTTTCAACTTTAAAATGGAGATTTATGTAAGCAATCTAAAGAGATTATCAAAATCAAGATTTGCTTGTTTATATATAAGGCAGTAAGTTTAGTATTTTCTCAATTATTTCTTGTTGTAATATAGTTATTTAATTTTCACAATTTCATCTT</genome_strand>
        <mrna_strand>ATACAAATGCAAAATATCAGTACAATTTGCGTGTATAAAGATAATAAAGCTGCAGTACTATTGTTGATAACTAAAGCAG................................................................................AGATCGAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG..........................................................................................................................................GCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA............................................................................................................................................GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG........................................................................................................................................................................................................................................................GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG......................................................................................................................TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG.......................................................................................................................................................................................GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACA...............................................................................GTTGGTATAGTGGATCCAAAAGAGGCCTATGGTATAACTCAGCCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTG...................................................................................................GTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTAATTTTCAACTTTAAAATGGAGATTTATGTAAGCAATCAAAAGAGATTATCAAAATCAAGATTTGCTTGTTTATATATAAGGCAGTAAGTTTAGTATTTTCTCAATTATTTCTTGTTGTAATATAGTTATTTAATTTTCACAATTTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577715" ref_strand="+" ref_description="SGN-U577715 Tomato 200607#2 [166 ESTs aligned] (*GB) gi|82621138|gb|ABB86257.1| (e_value=3e-80) 40S; (*ATH) AT1G04270.1 (e_value=2e-69) | Symbol: None | 40S ribosomal protein S15 (RPS15A), Strong similarity to Oryza 40S ribosomal protein S15. ESTs gb:R29788,gb:ATTS0365 come from this gene | chr1:1141603-1143050 REVERSE | Aliases: F19P19.29, F19P19_29; (*SWP) sp|P31674|RS15_ORYSJ (e_value=5e-71) 40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15; ">
      <seq>cggccggggctttcatcgtcgtccccaaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcgaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatttcaatgattgtgcttctatttagatttttgtacctttttgtttctctgaaattggttactttgtgtctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71641" stop="68585"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71341" g_stop="71264" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="87" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="233" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="70467" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="291" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69336" g_stop="68888" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="740" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="741" polyA_stop="751"/>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-U577715" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71341" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="70467"/>
          <exon e_start="69336" e_stop="68888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGA</genome_strand>
        <mrna_strand>CTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580459" ref_strand="+" ref_description="SGN-U580459 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|81076490|gb|ABB55394.1| (e_value=2e-40) 40S; (*ATH) AT5G09510.2 (e_value=6e-40) |; (*SWP) sp|Q945U1|RS15_ELAOL (e_value=1e-39) 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15; ">
      <seq>gcaaaaccctagccgcagtcacttccataggagcttagaagccaattcattctcgaagccatggcggaagttgaagctgatgttgcgaccggacagccaaggaagagaacattcaagaagttcagctacagaggagtagatctggattctcttcttgacatgtctactgatgagcttgttaagctttaccctgctcgtcctcgcagaaggttccagaggggtttgaagaggaagcctatggctttgatcaagaagctgcgcaaggcggtaagattactaacctccttttagcttctcttttaaaaataaatggtttatttggtgttaaatatcagccattttatggtagagaaacttgaaatagatatgttaggggttgtggaatgattacatgtctttgctttttgtagcctcagttatatccagcacaccttgcatttgtctattaatttagtgagaactctattagtgtaactgcaatgctatagtgaatttagatcatgagtcaaaagactgctgcgatgtgaagctgcatttttagtacatctgaatgctttttctcgaagttagtgaatgcaaccatttactgagcatggacaatctagtttacctgtatctttgttgattatccatgatcacctattgttctttctagttgcagaattgtatattatttcaacccccagatttttgcatgttcgacaaagtcatattaggtgaagctgaaattcgtttgatatacaaaaagaaacaatataagtataatgaatcttttagatgtgtttctgggttcttagtcttaaacgacttagagatgtttagaattaggcgcctaaggccgagcgcttccctcgttaattaagaggtggcgtggtattccacagagtgaggtttttatttgtggcgcactaagtgcgtaggcgcacaataatgttttggggtctccatggctgctttgggtgcatcaacctgcttccaaggtgtcgggattgccctatattttcaatctcccagtcgctttgtctttcttctgccactagaatttctacttgttttgttacattcttttgctggatttatgtggcagtattgtttcttttcttgtacataatagtctatgtgaactagtttattgtgatggtgaaattttactactatagttttttgggaaggaggaaaggccttctgatgttcaaatcatataatcagaatgccactttcctcatgcaactacctctccctacagaaataaacaggatttaatgcttgcacccagtgtttcatggtttgcaagtttggcttcgctgtaacatcgtaaacatcattatatgttttatattattaccaattttttgtatatgtatgtctttccattgatgtttttcatattcaaacagaaacgtgaggccccacctggtgagaagccagaggttgtgagaacacatttgaggaacatgatcattgttcctgagatgattggaagtgtcattggaatctacaatggaaaaactttcaatcaaattgaggtcaagcctgagatgattagtcactacttagctgagttctccatctcatacaagcctgtcaagcacggtaggcccggtattggtgctactcactcttcaaggttcattccattgaagtgattcatccaaatctgtctacatggtttctagtaatactagtacttttgttttactgcaattttgatgagaacagtggatactgaatggttctttgtttgagactagtaatttgctgatacattgcaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="71625" stop="68658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71326" g_stop="71264" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71162" g_stop="71017" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="209" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70524" g_stop="68958" g_length="1567"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="1776" r_length="1567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-U580459" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71326" e_stop="71264"/>
          <exon e_start="71162" e_stop="71017"/>
          <exon e_start="70524" e_stop="68958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATGGTAATTTCTATCTTTAAATCTGTAACCGATACGCTTCTATTTTCATTGTTCCTTGTATCTAACAGTTTGTTGATATGTTTTCTTTTTCTTCTGGTTGATAGGCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAGGTATTTAACTCTTTTTGCAAATGTATGCTGTTAAATTGCTATTCATTTGCTTTGTATGGATATGTGCTAGTGTAGAATTTTAATATCACGAGCTTATTCAACGTAATCTGTGCATGATTTTAAGTAAACATTGTCATTGTTGCTGTGTTATTGAAGAACATGTAACTAGGGCAAAAAATAGATATTGTAATTGATACTGTTAGATTCCCAAAAAGTAGCGTTCTTAGTAAAGTTTTTGTTGTTAAATTTTGAAGCAGGTAATGATTTTAAATACAGTTGTAAAATGCAGTCAAAGAATAGACATCTTTACCCTCGAAATTGTTTTACTGTGAAACAAAAGGGATATTAAGACCTAAAGTATATGAACTCTCAGACTCTTATGGATTTAGTGGATGTACCATATATATTTTTTTATTTACATGCTCATTTTTAATATGCAGTCAATTCCTTTTTCCGTGAAAAAGGACTCATCTTGAATGTTAATTGTGTTAGGTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATT</genome_strand>
        <mrna_strand>GCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG.....................................................................................................GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590094" ref_strand="+" ref_description="SGN-U590094 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aacaaagaaccattcagtttccattgttctcatcaaaattgcagtaaaacaaaagtactagtattactagaaaccatgtagacagatttggatgaatcacttcattggaatgaaccttgaagggggagtggctgcaataccgggcctaccgtgctagacagggttgtatgagagggaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="68692" stop="69472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68992" g_stop="69172" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-U590094" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>181</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68992" e_stop="69172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAGAACCATTCAGTATCCACTGTTCTCATCAAAATTGCAGTAAAACAAAAGTACTAGTATTACTAGAAACCATGTAGACAGATTTGGATGAATCACTTCAATGGAATGAACCTTGAAGAGTGAGTAGCACCAATACCGGGCCTACCGTGCTTGACAGGCTTGTATGAGATGGAGAAC</genome_strand>
        <mrna_strand>AACAAAGAACCATTCAGTTTCCATTGTTCTCATCAAAATTGCAGTAAAACAAAAGTACTAGTATTACTAGAAACCATGTAGACAGATTTGGATGAATCACTTCATTGGAATGAACCTTGAAGGGGGAGTGGCTGCAATACCGGGCCTACCGTGCTAGACAGGGTTGTATGAGAGGGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586140" ref_strand="+" ref_description="SGN-U586140 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|147823269|emb|CAN77553.1| (e_value=3e-51) hypothetical; (*ATH) AT5G07900.1 (e_value=1e-42)  Symbol: None | mitochondrial transcription termination factor family protein / mTERF family protein, low similarity to SP:Q99551 Transcription termination factor, mitochondrial precursor (mTERF) {Homo sapiens}; contains Pfam profile PF02536: mTERF |... ; ">
      <seq>gcactgcttcgccattttcactggagctgttcctattgttaggcttataatttgtgtcccttgaggcatgatcttggcattgacacatctctttcgtagggctccctttttttaaaatgcttcaatctctctataaatgtcaaagaaacttgtgtacaaagatcaggacaaccagccttctcgtgcagtttgtgtcaactagctgtggcagcaacatcccaactgatgagagcacactcgttgatttgtatcacagaaagacacatggtttatcaaaagaaaacgtcattagtgaagcagaaccactccaattagatactgctcaatgttcaaaagtttcagcttttgttgagttcttccaaaaccatgggttttctgcaacccaaacgaagagactaattagactacgccctaaattactagtatcgaaggtggacaaaaccctaaagcccaagttgaagttcttgcaatcaattggctttactgaagatgaacgcaataagattatctgtggtaaccccaacatactcatgagtagcgtagagaaacaactgactccatgctttgattccctaaagatgttcatgggtagtgaaatgcaagcaatggctgccatcaaacgaagtccgcagatctttaattataaattctctgatggtttggagcagactctacaggtattgcaccaacttggtattcctgattctgaagcttcagagtttatttcaaaagttcccattatcttgactataaatcccaaaaagatgagtaaggttggcttgagacttaaggaattggggtttgatgttacttcttcagcatttagggcagcttttaccgcaatgtctgtacttagtgattccaaaatggaaaagaaactggaaaactaccgaagtatgggcttttcagatggcgagatccgcaatatattcagattgcagccaacttgcatgttttattctgaggataatatcagggcaattgtggcattctatgttaataaactccatttgagcctatcacacttgtcacaaagaccatcctttctattgcgtagcctgaagaagagggttattcccaggtgttctgtcatgcaagttttgtggtcaacaggcgttatttcaaaagttaacaaactatcctcaattctaatgattagtgaaaaggacttcttacggaagtgtgttactaaatatgaagcacaagttcctcaactgctagctgcctaccgtggtgaacttgtgttcaacgaatacacttttcatttacgtgaaattcatcagatttcagtgtcaaaggcatcatcttctaaagctacgtagcttagtagtatttgcaccatctgtatctttcactgcaccatttactgtcgcattcatgttatcaacattgtttcccatatttaagttgaactactgccgttctgttcgtagaggtactagaattctttactggtaagcttatgaaggaaataaattttctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="72764" stop="78333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73063" g_stop="73104" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73105" i_stop="76590" i_length="3486">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76591" g_stop="78033" g_length="1443"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="1485" r_length="1443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-U586140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73063" e_stop="73104"/>
          <exon e_start="76591" e_stop="78033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGCTTCGCCATTTTCACTGGAGCTGTTCCTATTGTTAGGTATGTTATCTTGACTCCTCCTATTTTTGATGTATGTTTTATTTTTTAAAATTTGCTAATGATATTCGCTGTTCAAGTTTGTGTACATTGATTGATATAATTGAGGAAACAGCAGGAAATTTGTGCTATAATTTGGTGCTTTTCTGGTTCTTGAATTTGAATCTGATAATTTATCTGGGTTTTCTTTGTTTCTTTCTTTTATTTGTTCATTTAATCCGAATTCCTTTACCTGAGCACCCCCTTTACTGTTCTTCAGTCCCTTCAAGTTTTTGTTCCTTTGTGACTTGGGGCTTCTGGTAATTCTGAAGAAAAAGAAATTGCCTGTAGTTCATTAGTTTTTTCTTACAAGTTAAACGAAAGAATAGGGAAGAAGGATAACCAAGAGCCTACTTATTCTACTAAGTTTCATACTTGTAGAAAAAAATAATATTTTTAACCAAGATTGATTCTTTTTGAAGTGAACGACACGAACTCTTTGTTAGAATCCTACATTGATTGATTGATCTCGAATGAAATGAGTAGGGAATGATTTTGAAGAAGGTGAATTGGAAATGTGTTGCACAGCTCAGCCTATTTGCTTAGTGGTAATACGGTTCTCAAGAACCTAGAAGAGGGGGCAACACAAATGTTTGGAACTAATATTCTAGGAGAAGATGTTTTCAGATCATCCAATGAGTCGCGTGGAATGTAGTTGGTGTCGGAAAATGGAATTATTTTAATGTTTAACTTATACTTGTATGTTAGTAGTAATAGGAAGTATTGCTTCACAACATGACAATTGTTAAGCCTACGGAAGGGGTCAAAACTATAGTGTTTTAGAAAGATTTCTGTTGTTGGATTGCATAGAAGTAATGCATGTTATAGTTGGATGATAAGCTCAATAAAGATGTTTGTTGCATAGTATACTGTTGTCACTGCGACTGAGAAGTTAGGTAAGCATGTTACTTTTTTGGGTGATAGATTTGAGGCTTATAAGTTTTATGAATCTGACTAGCATTTTGGGTGGAAGGCTAGAGAAAATAAGGTCCTTATTCGATTGAGGCAGCATGCTAGAAGTTGTATAGATTACAATTACTTTCCTACCAGAGGACTTAGCTCAGCTAGTGAACTAATTATCAACTGCTCACTTTTGATATTATGATGGTTCACCACCACCCTTCAAGTGTGTTGTTGACTTGAGTTAAATCCTACAAGCAGTGAGTTCAAGTCATGAAGAGCTACAACACTTCTAAGGTGGAGAATATTGTTATGAGTGAGATTATAGTGGAAAGAAGATTCACAATGGAAACAATTGTTTATTATTCTGAGGAAGCATGCAGTAGACTAGCACTCCCCCTTATATGTTTTCTTCTTTGGTTCAGAACGTGTGAAAATGATCTTGATTGGGGACTTAAATTTGCAGCAATGTTATGAAAAAACAAAAGCACAAGGAAGTTATGCCTGAAGTTGTGAGGTGAATGCATTTTGAGGATAGTTCTTCTAAGTGTATTGAATTGATAAATGTGATGTATAAGTACATAATTGATTGGAAATAGAAGGGGAAAGAATAGATGTTGTGGTTGACTAGAATATCATATATGAACACCACTTATTTGAAAAAAAGAAGAAGTAAGAATACCATATACGAACACAACAGGAGTTATCAGCGGAGAATCTACTCTAAAAAGAGAACGAGGGAGAGGTAGGGACTTGAAGATCTTGGGCTTTATCAATGAGTTTGTTCAATCCTCTAAATATAATTAAGCTAGACAAACCAAATGAGCTCAAGGTCTGTACTAAAAAGTGGGGGCTTAAGATGTGATCTTCATCAATAAAAATATGAAGAGGCACCAAACAGTAAATAATAAGTGCCAAAAGATAAAATCGTAAAAGGTGAATTTCTCACCCTAAAACCACTAATAAGGAATGCATCGTATGAAAATTAGCAGAAAATGTCCTCATTGATGCTCAACTAGTGTTGAGTTTGGATTTGACTATGACTTGGATCTCAAGATTTGATGTCCATGTTGTTGACCTTACCTAGTGTCTCAACTAGGAGGCTGGCCAAGTCCTTTTCAAAGTCAAACTCAGATAGCTATATTTTTATAATAGTGATAAATCAGTACTTATTCTGTATCAATTTGTGTGTTTCACTTTCCTTTTCAGTTCGTCTAAAACAGAATGCCACTTTCTATATTTAGTAGGTGGCATTTGACTAGCACCATGTTTAAGAATTTAAGTAAGACTTCTGAAACTTATGATCTAAAACAAGCAATTAACTTTGTATGACTATGAATCAACTTAATAAGGGTAAAATAGAAAAATTAAAGTAAAACTGTTTCTAAATAACTGTAGTGTCTGGTTCAACTTGCGTGCACCACGACTAATTCCTTGGGGTAATTGCTACCTCCCACCAACACAAATACCAGGTAACTCCGTCCATCAAGGTTTGAACATCAGAATTTGAATCTCGTGGGCCTAATGAAGATGTGTATAATATACCAAAATGTCCTTTGAATGTTGTCTGGGATATGGAAACTAATTATAGAAAGTGGAATTCTTTTTAAAACATACTTAAAGGGAAGTAAGACAAATTAATTGAAACAGAGGATTATATTTTCCTCTCTGTCACAGTGTTCATGGTCCTCTTCCTCTTGCTCTCTTGGTCTGTCATGGAGCGACCAACAGTCATCATCTGCATAGCCTCTTGCTTTACTCTTTCTTATTATTGCCTGCTTCATCCACAATTTGACTTTCCCATTGTTTAGATGGCACTACTTTTTCTGTTTATACTTATGACTCACTGCTCTTTCATCTCACTCTTTCATTGTTACCAACAGAGACTTTATTACTATTTCTGCTCACTCAAGCATTATCTTCCACAATTTCCTTAGCTTTCCTGTGATAGAGGAATTCAATTTTTCCCTGTTGGTAAACCGGCAATAACAGTCTGAAGTATCTGCAAATATACAGCAATTTAATAAAAAAACAACCAAAGGAAACTCATTTTTTTGCTTCAGTTTTAATTAATTAATCTGTCTTGTCATACTGTTCTGAATCTTTTTGGGAGTGGTTGGAATAGGCATTTGACACTAGATCATTTAATCCTTTGTCGTCTTTTGTTCAAGTTGGATTTAATAACTTGAGTTTGAAAAACTGATTTCACATAGAGATTGAAAGTAAGAAAACCTAAATGCTGGACTGAGCTATTTTTATTTGGTAACAGTTAACGCACCAGACTCAAATATTTTCTTTAACTCAAACAGTCAGCTTATCAAACTGCTCGTGGCTGGTCCATTGTCATAATAGTTCTTCTAATGGGTCTAGAGATTGAGGAGTTTATCTGGCAATATGACAAAATTTTGGGGAATGTTGACTTTTCCTGAACTTGGAGGATTTATATAATTACACCAATGTTGAATTTCATTGTCCTCTTCTTTCACTAACAGGCACTCTTTTTTGGCGAACAGAGCTATTTAGCTAACAAGTTTTTGTTTGCTTTAGCAGGCTTATAATTTGTGTCCCTTGAGGCATGATCTTGGCATTGACACATCTCTTTCGTAGGGCTCCCTTTTTTTAAAATGCTTCAATCTCTCTATAAATGTCAAAGAAACTTGTGTACAAAGATCAGGACAACCAGCCTTCTCGTGCAGTTTGTGTCAACTAGCTGTGGCAGCAACATCCCAACTGATGAGAGCACACTCGTTGATTTGTATCACAGAAAGACACATGGTTTATCAAAAGAAAACGTCATTAGTGAAGCAGAACCACTCCAATTAGATACTGCTCAATGTTCAAAAGTTTCAGCTTTTGTTGAGTTCTTCCAAAACCATGGGTTTTCTGCAACCCAAACGAAGAGACTAATTAGACTACGCCCTAAATTACTAGTATCGAAGGTGGACAAAACCCTAAAGCCCAAGTTGAAGTTCTTGCAATCAATTGGCTTTACTGAAGATGAACGCAATAAGATTATCTGTGGTAACCCCAACATACTCATGAGTAGCGTAGAGAAACAACTGACTCCATGCTTTGATTCCCTAAAGATGTTCATGGGTAGTGAAATGCAAGCAATGGCTGCCATCAAACGAAGTCCGCAGATCTTTAATTATAAATTCTCTGATGGTTTGGAGCAGACTCTACAGGTATTGCACCAACTTGGTATTCCTGATTCTGAAGCTTCAGAGTTTATTTCAAAAGTTCCCATTATCTTGACTATAAATCCCAAAAAGATGAGTAAGGTTGGCTTGAGACTTAAGGAATTGGGGTTTGATGTTACTTCTTCAGCATTTAGGGCAGCTTTTACCGCAATGTCTGTACTTAGTGATTCCAAAATGGAAAAGAAACTGGAAAACTACCGAAGTATGGGCTTTTCAGATGGCGAGATCCGCAATATATTCAGATTGCAGCCAACTTGCATGTTTTATTCTGAGGATAATATCAGGGCAATTGTGGCATTCTATGTTAATAAACTCCATTTGAGCCTATCACACTTGTCACAAAGACCATCCTTTCTATTGCGTAGCCTGAAGAAGAGGGTTATTCCCAGGTGTTCTGTCATGCAAGTTTTGTGGTCAACAGGCGTTATTTCAAAAGTTAACAAACTATCCTCAATTCTAATGATTAGTGAAAAGGACTTCTTACGGAAGTGTGTTACTAAATATGAAGCACAAGTTCCTCAACTGCTAGCTGCCTACCGTGGTGAACTTGTGTTCAACGAATACACTTTTCATTTACGTGAAATTCATCAGATTTCAGTGTCAAAGGCATCATCTTCTAAAGCTACGTAGCTTAGTAGTATTTGCACCATCTGTATCTTTCACTGCACCATTTACTGTCGCATTCATGTTATCAACATTGTTTCCCATATTTAAGTTGAACTACTGCCGTTCTGTTCGTAGAGGTACTAGAATTCTTTACTGGTAAGCTTATGAAGGAAATAAATTTTCTGAT</genome_strand>
        <mrna_strand>GCACTGCTTCGCCATTTTCACTGGAGCTGTTCCTATTGTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTATAATTTGTGTCCCTTGAGGCATGATCTTGGCATTGACACATCTCTTTCGTAGGGCTCCCTTTTTTTAAAATGCTTCAATCTCTCTATAAATGTCAAAGAAACTTGTGTACAAAGATCAGGACAACCAGCCTTCTCGTGCAGTTTGTGTCAACTAGCTGTGGCAGCAACATCCCAACTGATGAGAGCACACTCGTTGATTTGTATCACAGAAAGACACATGGTTTATCAAAAGAAAACGTCATTAGTGAAGCAGAACCACTCCAATTAGATACTGCTCAATGTTCAAAAGTTTCAGCTTTTGTTGAGTTCTTCCAAAACCATGGGTTTTCTGCAACCCAAACGAAGAGACTAATTAGACTACGCCCTAAATTACTAGTATCGAAGGTGGACAAAACCCTAAAGCCCAAGTTGAAGTTCTTGCAATCAATTGGCTTTACTGAAGATGAACGCAATAAGATTATCTGTGGTAACCCCAACATACTCATGAGTAGCGTAGAGAAACAACTGACTCCATGCTTTGATTCCCTAAAGATGTTCATGGGTAGTGAAATGCAAGCAATGGCTGCCATCAAACGAAGTCCGCAGATCTTTAATTATAAATTCTCTGATGGTTTGGAGCAGACTCTACAGGTATTGCACCAACTTGGTATTCCTGATTCTGAAGCTTCAGAGTTTATTTCAAAAGTTCCCATTATCTTGACTATAAATCCCAAAAAGATGAGTAAGGTTGGCTTGAGACTTAAGGAATTGGGGTTTGATGTTACTTCTTCAGCATTTAGGGCAGCTTTTACCGCAATGTCTGTACTTAGTGATTCCAAAATGGAAAAGAAACTGGAAAACTACCGAAGTATGGGCTTTTCAGATGGCGAGATCCGCAATATATTCAGATTGCAGCCAACTTGCATGTTTTATTCTGAGGATAATATCAGGGCAATTGTGGCATTCTATGTTAATAAACTCCATTTGAGCCTATCACACTTGTCACAAAGACCATCCTTTCTATTGCGTAGCCTGAAGAAGAGGGTTATTCCCAGGTGTTCTGTCATGCAAGTTTTGTGGTCAACAGGCGTTATTTCAAAAGTTAACAAACTATCCTCAATTCTAATGATTAGTGAAAAGGACTTCTTACGGAAGTGTGTTACTAAATATGAAGCACAAGTTCCTCAACTGCTAGCTGCCTACCGTGGTGAACTTGTGTTCAACGAATACACTTTTCATTTACGTGAAATTCATCAGATTTCAGTGTCAAAGGCATCATCTTCTAAAGCTACGTAGCTTAGTAGTATTTGCACCATCTGTATCTTTCACTGCACCATTTACTGTCGCATTCATGTTATCAACATTGTTTCCCATATTTAAGTTGAACTACTGCCGTTCTGTTCGTAGAGGTACTAGAATTCTTTACTGGTAAGCTTATGAAGGAAATAAATTTTCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569468" ref_strand="+" ref_description="SGN-U569468 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>aaaacagagatacctacaaatggcgaaatcaatgagatcaaagagggaaaagaggctgagagctataaggagggatatagttgctacagaaccatctgttcttaagaaagaagctgctaaattggctgcccaagaagctgcccttgctgctcctaagcttattgttaagtctcccttcagccgcaccaccatggatacttctgcctctacttctaacgacgaatctaaaatggatgtggagatggctgatggcaatcaaagttcaaaatctctaaaacctcttggaaagaagatgaaaaagaagcttaaaatagctaagaagaagaatcatggcaagggaaagatcaggaggaagaatgtttgactgcaggcggtagccatcttgctaagctgatagatgtcttgttacttactgttgacaagcccctcccatattctctccttgattcatgatcttacattgtagtagagtatcttggaacttgagcatgtgagtgggtatgctcatatagattgtgttcatgggctgtcaaaatgaagcctcgagttcttaaatttgtttacaaaatagatggcgtttttcattttccttttacagtttgttggaacatgctaaacttgaaaggaaatatgaacatgtagactgtaatccaacaatgttaaagatgttttagttttctgattaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="-" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="80892" stop="78417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80592" g_stop="80360" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80359" i_stop="79173" i_length="1187">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79172" g_stop="78717" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="689" r_length="456" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="-" ref_id="SGN-U569468" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U569468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80592" e_stop="80360"/>
          <exon e_start="79172" e_stop="78717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGAGATACCTACAAATGGCGAAATCAATGAGATCAAAGAGGGAAAAGAGGCTGAGAGCTATAAGGAGGGATATAGTTGCTACAGAACCATCTGTTCTTAAGAAAGAAGCTGCTAAATTGGCTGCCCAAGAAGCTGCCCTTGCTGCTCCTAAGCTTATTGTTAAGTCTCCCTTCAGCCGCACCACCATGGATACTTCTGCCTCTACTTCTAACGACGAATCTAAAATGGGTATGCTTCTATTTATTTTTCCCATCGATTCACTTTTACTTGATTTGGAATAAATTTGATATCAAATTTGCTAAAAGACCAAAATTTTGTTGCTTTGGCTGCTTCTAGTTTGAATTTCTTTTTTTATGGTTTCAAATTTATCTTCTGCTGTTACCATTTATATTCTTGTGTGTTTGTTTTTGGAGTATGATATTTTGACAGGATGGAGTGGTGTGAGAAAGGTGGAAAACAGAAAAAATAAAAATTTATAGAGAAGATGTAAGAATGAAGAACGTATCTGGGTATTGCTATGGGAGCTTCATATTTCTTTGAAGATATTATCTTTGGAGATATCATGAATATGGCTATAGTAGATTCATATTTATGTGAAGTTTGACGAGATATCATGAAGTGTTGGCAAGTTCCTTACTACAGTTTTTAGACCATCAATGTCACATGAGAGTGAAGCTAAGGTTCTTTAGGTCCTAAATTGTTGCCAAACAAGCAACATGCATAGTTGAGGAGTGCACGAGTTGGCCTAAGCACCGCCATTATAAAAAAAATTGAAGCAGACTGAATAATGCATACAGGCAATCTAACTAATCAGGATTGAACCGTTTTTGTCAACTTTTGAAAGCTGATATTATGATGCATAAAATAACTCTTCATCTTTTCTTACTTTTTTGTTAGTGAATTTTGCTAGTTCTTAAGATACTCCAGATGAGGCTTAATTTAAGAGATTGAGATTAATGATTTAGCCAGTTAACGCTGATAATAGATTAACGGTCAGTTATCAGCATCAACCACTTTGTCTCAGTGTGTATATCCAGTGATTCCAGTAGTGATATGAAAGGAGGAATTATATGAATTATCTGAAACATATTGCCACGAAAGGAAGATATCTCGTTACTAGAGTTCATTGAATACATTAGTTTCATAAGTTTAGCTTGTACATCATCAGTGTGCACAATCAAGACACAACTCCATATCATGCCTTTTTCTTTTGGAACCCAGAAACAGCCCCCAACAACTAGCGTCCTAATATTATAAGTTCCTATTTAAATTTTATGGAAAGATTAATACATGTGAGTAAGATTTAACTGCTCATTCTACTCCAGTGTCCTGTATCTGCTATTGCTGCTGAAACTTGTGCACCTGATTTTTAGCCTCCCCTCAGTATGTTATCTTGTCATTGTTTTGATTTCCAGATGTGGAGATGGCTGATGGCAATCAAAGTTCAAAATCTCTAAAACCTCTTGGAAAGAAGATGAAAAAGAAGCTTAAAATAGCTAAGAAGAAGAATCATGGCAAGGGAAAGATCAGGAGGAAGAATGTTTGACTGCAGGCGGTAGCCATCTTGCTAAGCTGATAGATGTCTTGTTACTTACTGTTGACAAGTCCCTCCCATATTCTCTCCTTGATTCATGATCTTACATTGTAGTAGAGTATCTTGGAACTTGAGCATGTGAGTGGGTATGCTCATATAGATTGTGTTCATGGGCTGTCAAAATGAAGCCTCAAGTTCTTAAATTTGTTTACAAAATAGATGGCGTTTTTCATTTTCCTTTTACAGTTTGTTGGAACATGCTAAACTTGAAAGGAAATATGAACATGTAGACTGTAATCCAACAATGTTAAAGATGTTTTAGTTTTCTGATTAGGAG</genome_strand>
        <mrna_strand>AAAACAGAGATACCTACAAATGGCGAAATCAATGAGATCAAAGAGGGAAAAGAGGCTGAGAGCTATAAGGAGGGATATAGTTGCTACAGAACCATCTGTTCTTAAGAAAGAAGCTGCTAAATTGGCTGCCCAAGAAGCTGCCCTTGCTGCTCCTAAGCTTATTGTTAAGTCTCCCTTCAGCCGCACCACCATGGATACTTCTGCCTCTACTTCTAACGACGAATCTAAAATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAGATGGCTGATGGCAATCAAAGTTCAAAATCTCTAAAACCTCTTGGAAAGAAGATGAAAAAGAAGCTTAAAATAGCTAAGAAGAAGAATCATGGCAAGGGAAAGATCAGGAGGAAGAATGTTTGACTGCAGGCGGTAGCCATCTTGCTAAGCTGATAGATGTCTTGTTACTTACTGTTGACAAGCCCCTCCCATATTCTCTCCTTGATTCATGATCTTACATTGTAGTAGAGTATCTTGGAACTTGAGCATGTGAGTGGGTATGCTCATATAGATTGTGTTCATGGGCTGTCAAAATGAAGCCTCGAGTTCTTAAATTTGTTTACAAAATAGATGGCGTTTTTCATTTTCCTTTTACAGTTTGTTGGAACATGCTAAACTTGAAAGGAAATATGAACATGTAGACTGTAATCCAACAATGTTAAAGATGTTTTAGTTTTCTGATTAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U563046" ref_strand="+" ref_description="SGN-U563046 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|147779029|emb|CAN71395.1| (e_value=2e-134) hypothetical; (*ATH) AT3G20320.1 (e_value=1e-132) | Symbol: None | mce-related family protein, contains Pfam PF02470: mce related protein | chr3:7087479-7089868 REVERSE | Aliases: MQC12.6; (*SWP) sp|Q1XDB5|YCF22_PORYE (e_value=1e-14) Uncharacterized protein ycf22 OS=Porphyra yezoensis GN=ycf22; ">
      <seq>gctctcctctcagtgatgagagttcaacagattcagtcagtggttgatctgcgctagggttgcttccagcttgaaccttcctatatgcttccattttgttgatcttcaatctcgattttcaatttctccagctcaatttttatctatagaacaagaaaaagtgtataattttggaaagacaagaaaagaaaactagatgatgtctggaaatgctttagtccatgtatcaacaaattctactgttttccccatcatacccagtagaagaaatgtgttgggtgatcgttttctgtgtataaaatcaccaatcaggcctaaaaatcgaacctttagtgtgaaagcaatgtctgcaaatacgggtcatagtcaagaacaagagcaacaacccgagtcatcttccgaccagaaaggtccactttctgttattttagatgttcccaggaatatttggaagcgaactatgcgtccattgagtgattttgggtttggtaaaaggagcatctgggaaggtggggttgggttgtttatcgtttcgggtactgtgttgttggcactcagcttagcttggttgagagggtttcagctgcggtctaggtttaggaagtatttagctgtgcttgagtttgagcaggcttgtggcatctgcactggcacacctgttagaatcagaggagtaagtattggtaatgtgattcgagtcaatccttccttgagaaatgttgaagctgttgttgaggttgaagatgataagatcattattcctcgaaactcgttagttgaggtgaaccagtctggtcttatcatggaaaccatgattgatatcacacctcgagatccaatcccaataccttctgcagggcccctggatccggattgtgttaaggagggtctgataatttgcgacaggcaaaagattaaaggacaacaaggggttagtctagatgcattggttggaatattcacacgtcttggccgtgaagcagaagaaattggtttggcgaatacctatgctttggctgagagagctctaaatgttattgaggaggcgcgaccgctgcttacaaagattaaagccatggctgaggatgtccaacctatgctagctgatgttcgtgatagtggcttactgaaggaagttgagagtttaacccgaagtctggcactaacatctgaagatataaggagagtgcactccacggtcatgactcctgagaacaccgaattgatacggaagtctatttatacgctggtcttcactttgaagaatgttgagagcattagctccgacattttgggattcactggcgatgaagctactaggcgcaatttgaaaatgcttatcaaatcgctaagcaggctattgtaaagttgattaatgtcttgcaatactactagcctgagagaggttccaaagaggagaggttgttctgtttggcattgacaagagtccttgggctatggattataggttttctgctaattcaaaaggatttcaaggtgtgaaagcttccctcttcacctttgttctgtgttagaaattgcaatataaatgtcattagaagatggtttcactaatatgaattttgattgtttggtcactttctcttttgagtttcctaatatcagcacctcatgttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0020N15-1QskU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0020N15.1" temp_strand="+" temp_description="C02SLm0020N15.1  AC215473.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0020N15 sequenced_by:kribb upload_account_name:korea">
        <position start="81954" stop="86307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82254" g_stop="82989" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="736" r_length="736" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82990" i_stop="83115" i_length="126">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83116" g_stop="83445" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="737" r_stop="1066" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83446" i_stop="84796" i_length="1351">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84797" g_stop="84912" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1067" r_stop="1182" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84913" i_stop="85465" i_length="553">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="85466" g_stop="85556" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1183" r_stop="1273" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="85557" i_stop="85638" i_length="82">
            <donor d_prob="0.236" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="85639" g_stop="86007" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1274" r_stop="1642" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0020N15.1" gen_strand="+" ref_id="SGN-U563046" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0020N15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U563046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82254" e_stop="82989"/>
          <exon e_start="83116" e_stop="83445"/>
          <exon e_start="84797" e_stop="84912"/>
          <exon e_start="85466" e_stop="85556"/>
          <exon e_start="85639" e_stop="86007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCCTCTCAGTGATGAGAGTTCAACAGATTCAGTCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAAAGGAGCATCTGGGAAGGTGGGGTTGGGTTGTTTATCGTTTCGGGTACTGTGTTGTTGGCACTCAGCTTAGCTTGGTTGAGAGGGTTTCAGCTGCGGTCTAGGTTTAGGAAGTATTTAGCTGTGCTTGAGTTTGAGCAGGCTTGTGGCATCTGCACTGGCACACCTGTTAGAATCAGAGGAGTAAGTATTGGTAATGTGATTCGAGTCAATCCTTCCTTGAGAAATGTTGAAGCTGTTGTTGAGGTGAGCGACATGTATCTTTGCTGAACACATTTACTGAATTATATATATTTCTTTTGAAGTAATAAGTAGTTGTTCTATAGTTGCTTGTGTATGTTTTGATCTTAAACATTGATTATGTGTTTATAGGTTGAAGATGATAAGATCATTATTCCTCGAAACTCGTTAGTTGAGGTGAACCAGTCTGGTCTTATCATGGAAACCATGATTGATATCACACCTCGAGATCCAATCCCAATACCTTCTGCAGGGCCCCTGGATCCGGATTGTGTTAAGGAGGGTCTGATAATTTGCGACAGGCAAAAGATTAAAGGACAACAAGGGGTTAGTCTAGATGCATTGGTTGGAATATTCACACGTCTTGGCCGTGAAGCAGAAGAAATTGGTTTGGCGAATACCTATGCTTTGGCTGAGAGAGCTCTAAATGTTATTGAGGAGGCGCGACCGCTGCTTACAAAGGTTTGATGCACTTTACATTTATTCACCTCCCATTTCATTCTTTTTGTATGGATGATGTTTAATCTGCTTACAAAGGTTTGATGCACTTTACATTTATTCACCTCCCATTTCATTCTTTTTGTATGGATGATGTTTAATATTAAGGATAAAAGAAGAAGGAAGTCTAACAAACAGATGAATTTAACTTCTGTACTTTTAGCTTAAGATATGGTTATGCAATGATATAACTTGTTGAAATTCTGTTCTTCTCTATTTATGATTCATAACATCTTTATGATAAAAAATTTGTTCTGTATTTTTTTCTTTAAAGACCTAGAGTCATGTATGGAAACATTTTTAAAAACACTGATATTCTAAGCTTAGGTTAAATCACACATCTCTACTTAGTTCTTTCCACCAACTCACTATGTTCTACACGTCTACACCCTATAAAAGTGTAATGCGTGATGTATGAGTTGTACTAGAATCTTATGGACTTCAATCCTCTTTGACAGCATCTGTGTAAAGAGCATTGGTGTAGATATTTCACTGTAATGAAATTTGTAAGTTGGATAACACTTAAATTTGGAGAACTCTTAGTTAAAAGACCCTGGTTAAGTTAATATGTTTCTGGAAGTGCAGAAAGTGATTACTGAGGTCATTAGCTTGGGAAAGCCCACAGTATATTATACCCCAAGTTATGATCTGCAGAGGAGATATGTGAATGAATTGTCAGACAAGATCTGCTTGATTGCTTTGCAATTCTTTTTATGAAGGATTTTTTTGTCACATGTGCATGCAAAACTAATTTGAGTTAGAATATCTTGTTTTGAATGCAGTAAAACTATTAATCAAGTGCTTAATAATACAAGATTAATTTTATAAGTCTGCTTGACTATTATTATCTCTAGTATGTGTATCTGTTTGAGAATTCTGTCAGACACTAACATCTCGTGCCTCATGCAACCATTTCTATTTACAGAAAAATGTTCTCTTGTTGACAAAATTAGTCTAATCCAGTTTGGACTTATTGATGTTCATTCAGTACACTAATATGTCATGTAGTGCATATTCTAAATAATATGTCCAAAGCAAGTGCACAACTATTGTTAGTTTGTCAGATGTTAGGTGGTAAGTGTAAAACTGTGAGTTGTAAGTACGGCTGCAATATGTGTTTTCCTATACCACATTCATCAGTATCAAGCTATAGGACCATTTATAGAGGAGGAGGGGAGAACTGAAACAGCGGTCAATGTTGGGCATACAGTTGCACTCATCCTATTATGCTACTTGAGCAATTTATGTGTTCCTTGCAGGTATTTAGTATATTCTCATGTATGAACATTGTACCTTTGATGTATTGACACCTCAGATTAAAGCCATGGCTGAGGATGTCCAACCTATGCTAGCTGATGTTCGTGATAGTGGCTTACTGAAGGAAGTTGAGAGTTTAACCCGAAGTCTGGCACTAACATCTGAAGATATAAGGTAAATCAGTAACTTATGGTAGCTTCTTTTCTAAGGCAAGGGTGAAGTAGTCCTAGACCTTTATAAGATATACTTGGTACTTGTTAGTTTGACTGAGAATAGAACTGGGTGATACAAATTAAGTTTTGCTCATGCTGCTCACTTGTGAGCTATATATTTGGAGTGAGACCAGTTATGTAAGAAGTTCAAATAAGCAGATAGCAAGTTCAATGAAAAAGGCTTCACAAACATGGCATGCTTTTGTACATTATCAAGAATTCTAGATAGCCACATATTGAACTCATGCTTTTACCCACGTCATAGGCCATTCTCCACTAGGACACAACTTTGGATGCTTTCTTGGTTGAGTATACATGATGTGAAAAGGGCTAAACATTTCTAATTTCCTGGTCGCAACAGTGAGTTCCTTTTATTGATATCAAAAGTGGAGTTCAAAAGATAGTAACTCTTCTAGGTGATCCCCAAGTTATGCATCTACTTTGAGGTTGCTTCTGTTACTGTTTGCTTTAGGCATGGAATCTGCTTTTACAGTGTTTTATGAACCAAATTGCAGGAGAGTGCACTCCACGGTCATGACTCCTGAGAACACCGAATTGATACGGAAGTCTATTTATACGCTGGTCTTCACTTTGAAGAATGTTGAGGTAATTTCCCGCGTGGTAATAGTCATTCTAACACGTCAATCACTTTCATGCTTTGTGATTCATCATTTGTCACATTATGCAGAGCATTAGCTCCGACATTTTGGGATTCACTGGCGATGAAGCTACTAGGCGCAATTTGAAAATGCTTATCAAATCGCTAAGCAGGCTATTGTAAAGTTGATTAATGTCTTGCAATACTACTAGCCTGAGAGAGGTTCCAAAGAGGAGAGGTTGTTCTGTTTGGCATTGACAAGAGTCCTTGGGCTATGGATTATAGGTTTTCTGCTAATCCAAAAGGATTTCAAGGTGTGAAAGCTTCCCTCTTCACCTTTGTTCTGTGTTAGAAATTGCAATATAAATGTCATTAGAAGATGGTTTCACTAATATGAATTTTGATTGTTTGGTCACTTTCTCTTTTGAGTTTCCTAATATCAGCACCTCATGTTTTCAT</genome_strand>
        <mrna_strand>GCTCTCCTCTCAGTGATGAGAGTTCAACAGATTCAGTCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAAAGGAGCATCTGGGAAGGTGGGGTTGGGTTGTTTATCGTTTCGGGTACTGTGTTGTTGGCACTCAGCTTAGCTTGGTTGAGAGGGTTTCAGCTGCGGTCTAGGTTTAGGAAGTATTTAGCTGTGCTTGAGTTTGAGCAGGCTTGTGGCATCTGCACTGGCACACCTGTTAGAATCAGAGGAGTAAGTATTGGTAATGTGATTCGAGTCAATCCTTCCTTGAGAAATGTTGAAGCTGTTGTTGAG..............................................................................................................................GTTGAAGATGATAAGATCATTATTCCTCGAAACTCGTTAGTTGAGGTGAACCAGTCTGGTCTTATCATGGAAACCATGATTGATATCACACCTCGAGATCCAATCCCAATACCTTCTGCAGGGCCCCTGGATCCGGATTGTGTTAAGGAGGGTCTGATAATTTGCGACAGGCAAAAGATTAAAGGACAACAAGGGGTTAGTCTAGATGCATTGGTTGGAATATTCACACGTCTTGGCCGTGAAGCAGAAGAAATTGGTTTGGCGAATACCTATGCTTTGGCTGAGAGAGCTCTAAATGTTATTGAGGAGGCGCGACCGCTGCTTACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAGCCATGGCTGAGGATGTCCAACCTATGCTAGCTGATGTTCGTGATAGTGGCTTACTGAAGGAAGTTGAGAGTTTAACCCGAAGTCTGGCACTAACATCTGAAGATATAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTGCACTCCACGGTCATGACTCCTGAGAACACCGAATTGATACGGAAGTCTATTTATACGCTGGTCTTCACTTTGAAGAATGTTGAG..................................................................................AGCATTAGCTCCGACATTTTGGGATTCACTGGCGATGAAGCTACTAGGCGCAATTTGAAAATGCTTATCAAATCGCTAAGCAGGCTATTGTAAAGTTGATTAATGTCTTGCAATACTACTAGCCTGAGAGAGGTTCCAAAGAGGAGAGGTTGTTCTGTTTGGCATTGACAAGAGTCCTTGGGCTATGGATTATAGGTTTTCTGCTAATTCAAAAGGATTTCAAGGTGTGAAAGCTTCCCTCTTCACCTTTGTTCTGTGTTAGAAATTGCAATATAAATGTCATTAGAAGATGGTTTCACTAATATGAATTTTGATTGTTTGGTCACTTTCTCTTTTGAGTTTCCTAATATCAGCACCTCATGTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2729" PGL_stop="1933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2729" e_stop="1933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="2729" e_stop="1933" e_length="797"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2729" stop="1933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573815" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCCACTGATATCCGAAGGTTACCCTCAAAGCTTGTCGGGGTGCTGGATGATGATGCACTTAAGCTATACAAACTTATATGGTCCCGTACCATGGCATGCCAGATGGAACCTGC</gDNA_template>
            <first_frame> N  L  V  H  A  Y  L  A  R  R  A  L  D  Y  L  I  G  F  N  I  S  P  L  L  W  R  K  L  P  G  C  Q  S  A  G  R  V  Q  S  A  A  L  S  L  I  C  D  R  E  M  E  I  D  G  F  K  P  Q  E  Y  W  T  V  L  V  E  F  K  K  N  K  N  L  D  L  A  N  N  F  L  S  S  H  L  T  H  F  D  T  K  K  L  S  Q  F  S  V  S  S  H  T  E  A  M  E  I  E  G  K  I  N  S  S  N  F  E  V  L  S  S  K  I  T  K  K  Q  R  N  P  S  P  P  Y  I  T  S  T  L  Q  Q  D  A  A  N  K  L  D  F  S  S  T  Y  T  M  K  L  A  Q  K  L  Y  E  G  I  Q  L  S  D  G  K  S  T  G  L  I  T  Y  I  R  T  D  G  L  H  I  S  D  E  A  T  K  D  I  Q  S  Y  I  S  E  R  Y  G  Q  N  F  A  S  K  N  G  R  K  Y  F  K  K  V  K  N  A  Q  E  A  H  E  A  I  R  P  T  D  I  R  R  L  P  S  K  L  V  G  V  L  D  D  D  A  L  K  L  Y  K  L  I  W  S  R  T  M  A  C  Q  M  E  P   </first_frame>
            <second_frame>  I  *  C  M  P  I  L  Q  G  V  L  L  I  T  *  L  G  S  T  F  L  H  F  C  G  G  N  Y  L  V  V  N  L  L  V  G  F  S  L  L  P  Y  H  L  Y  V  T  E  K  W  K  L  M  D  S  N  H  R  S  I  G  Q  S  W  L  N  L  R  R  T  K  T  *  I  *  P  I  T  F  C  R  P  I  *  P  I  L  I  P  R  N  *  V  S  S  L  L  A  L  I  P  K  Q  W  K  L  K  G  R  *  I  H  Q  T  L  K  F  L  A  L  R  *  P  K  S  R  E  T  P  L  L  L  I  *  H  Q  H  F  S  K  M  P  Q  T  N  W  T  F  H  Q  H  I  R  *  N  L  H  K  S  Y  M  R  E  S  S  Y  L  M  A  S  Q  Q  D  *  *  L  T  S  E  Q  M  A  C  T  F  Q  M  K  L  P  R  T  F  N  P  I  S  V  K  G  M  D  R  I  L  H  Q  R  M  V  A  N  T  S  R  R  *  R  M  L  K  R  P  M  K  L  L  D  P  L  I  S  E  G  Y  P  Q  S  L  S  G  C  W  M  M  M  H  L  S  Y  T  N  L  Y  G  P  V  P  W  H  A  R  W  N  L  </second_frame>
            <third_frame>   F  S  A  C  L  S  C  K  A  C  S  *  L  P  D  W  V  Q  H  F  S  T  S  V  E  E  I  T  W  L  S  I  C  W  S  G  S  V  C  C  P  I  T  Y  M  *  Q  R  N  G  N  *  W  I  Q  T  T  G  V  L  D  S  P  G  *  I  *  E  E  Q  K  P  R  F  S  Q  *  L  F  V  V  P  F  D  P  F  *  Y  Q  E  I  K  S  V  L  C  *  L  S  Y  R  S  N  G  N  *  R  E  D  K  F  I  K  L  *  S  S  *  L  *  D  N  Q  K  A  E  K  P  L  S  S  L  Y  N  I  N  T  S  A  R  C  R  K  Q  I  G  L  F  I  N  I  Y  D  E  T  C  T  K  A  I  *  G  N  P  V  I  *  W  Q  V  N  R  I  D  N  L  H  Q  N  R  W  L  A  H  F  R  *  S  Y  Q  G  H  S  I  L  Y  Q  *  K  V  W  T  E  F  C  I  K  E  W  S  Q  I  L  Q  E  G  E  E  C  S  R  G  P  *  S  Y  *  T  H  *  Y  P  K  V  T  L  K  A  C  R  G  A  G  *  *  C  T  *  A  I  Q  T  Y  M  V  P  Y  H  G  M  P  D  G  T  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2729" stop="1935"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDGFKPQEYWTVLVEFKKNKNLDLANNFLSSHLTHFDTKKLSQFSVSSHTEAMEIEGKINSSNFEVLSSKITKKQRNPSPPYITSTLQQDAANKLDFSSTYTMKLAQKLYEGIQLSDGKSTGLITYIRTDGLHISDEATKDIQSYISERYGQNFASKNGRKYFKKVKNAQEAHEAIRPTDIRRLPSKLVGVLDDDALKLYKLIWSRTMACQMEP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16522" PGL_stop="8631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16522" e_stop="16337"/>
            <exon e_start="16241" e_stop="16023"/>
            <exon e_start="15129" e_stop="14992"/>
            <exon e_start="14515" e_stop="14390"/>
            <exon e_start="14145" e_stop="14017"/>
            <exon e_start="13475" e_stop="13386"/>
            <exon e_start="13305" e_stop="13155"/>
            <exon e_start="11445" e_stop="11336"/>
            <exon e_start="10662" e_stop="10591"/>
            <exon e_start="9943" e_stop="9838"/>
            <exon e_start="9744" e_stop="9544"/>
            <exon e_start="9207" e_stop="9165"/>
            <exon e_start="9060" e_stop="8631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="1.000" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.338" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.681" acc_prob="0.166" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.367" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.282" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="16522" e_stop="16337" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16336" i_stop="16242" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="16241" e_stop="16023" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="16022" i_stop="15130" i_length="893"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15129" e_stop="14992" e_length="138"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14991" i_stop="14516" i_length="476"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14515" e_stop="14390" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="14389" i_stop="14146" i_length="244"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14145" e_stop="14017" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14016" i_stop="13476" i_length="541"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13475" e_stop="13386" e_length="90"/>
          </exon>
          <intron i_serial="6" don_prob="0.338" acc_prob="0.952">
            <gDNA_intron_boundary i_start="13385" i_stop="13306" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13305" e_stop="13155" e_length="151"/>
          </exon>
          <intron i_serial="7" don_prob="0.681" acc_prob="0.166">
            <gDNA_intron_boundary i_start="13154" i_stop="11446" i_length="1709"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="11445" e_stop="11336" e_length="110"/>
          </exon>
          <intron i_serial="8" don_prob="0.968" acc_prob="0.996">
            <gDNA_intron_boundary i_start="11335" i_stop="10663" i_length="673"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="10662" e_stop="10591" e_length="72"/>
          </exon>
          <intron i_serial="9" don_prob="0.367" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10590" i_stop="9944" i_length="647"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="9943" e_stop="9838" e_length="106"/>
          </exon>
          <intron i_serial="10" don_prob="0.282" acc_prob="0.906">
            <gDNA_intron_boundary i_start="9837" i_stop="9745" i_length="93"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="9744" e_stop="9544" e_length="201"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="9543" i_stop="9208" i_length="336"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="9207" e_stop="9165" e_length="43"/>
          </exon>
          <intron i_serial="12" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9164" i_stop="9061" i_length="104"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="9060" e_stop="8631" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16522" stop="16337"/>
              <exon start="16241" stop="16023"/>
              <exon start="15129" stop="14992"/>
              <exon start="14515" stop="14390"/>
              <exon start="14145" stop="14017"/>
              <exon start="13475" stop="13386"/>
              <exon start="13305" stop="13155"/>
              <exon start="11445" stop="11336"/>
              <exon start="10662" stop="10591"/>
              <exon start="9943" stop="9838"/>
              <exon start="9744" stop="9544"/>
              <exon start="9207" stop="9165"/>
              <exon start="9060" stop="8631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCCTGGGCACTCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAG : CTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAG : TTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTGCTTCCAAAGACGTGGAACCTCTCCGTCGAGCTAGG : GTAATAATGGAAATTCCTTTAGAACTTATGTTAACCATAAGCAAAAAGCTTCCTTGGATGTTTTTTCCAGATATTATACCTGTAGGACATCCAGTATTCGACATTATCAATTCAACCAATCCCGAG : ACAGATTCGGACTTGAGGTTGGCGTGCCTTCTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAG : GAGGATCTTTTGGAGTTGCAAGACGAGAAGCTTGCTTCTACCATGAGAGAACAGCAAAATCGAGCACTTGAGTTTTGGGAGAAAAACTGG : CATTCTGCAGTACCTCTCAAAATTAAGCGTCTTGCTCAGGATCCTGAGAGATTTATTTGGGCAATGAGTATAGCACAATCTCGATGCATCAGCATGCAAACAAGAATTGGTTCACTGGTTCAAGAAGCAAATATGTTGGTACCTTATGCTG : ACATGATGAATCATTCTTTTCAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGCATGCTGGAGGTGATGATAAATGCAGGACAAAAAATTAGAAAAGGAGATGAG : ATGACTGTTAATTACATGGCTGGACAGAAGAATGACTTATTTATGCAGAGATATGGTTTCTCATCGCCTGTG : AATCCTTGGGATGTCATTCATTTCACCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA : CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG : ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA : GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACC</gDNA_template>
            <first_frame> T  P  G  H  S  L  T  D  S  R  V  D  N  V  S  R  T  Q  I  P  S  M  Y  E  S  S  L  L  K  F  H  *  I  F  S  S  L  S  R  M  V  S  S  T  I  L  I  Q  Q  P  T  N  F  F  H  Q  P  E  L  H  H  Q  :  L  W  R  G  L  Q  H  G  C  V  A  S  L  Q  K  Q  P  I  L  V  C  N  S  N  K  R  N  R  P  L  R  V  S  S  S  A  N  G  A  V  T  S  S  T  L  E  A  Y  D  S  S  P  S  P  S  A  F  P  L  F  T  P  P  S  Q  P  Q  D  T  P  A  S  Q  :  L  E  L  A  D  P  D  F  Y  K  I  G  Y  V  R  S  F  R  A  Y  G  I  E  F  R  E  G  P  D  G  Y  G  V  F  A  S  K  D  V  E  P  L  R  R  A  R  :  V  I  M  E  I  P  L  E  L  M  L  T  I  S  K  K  L  P  W  M  F  F  P  D  I  I  P  V  G  H  P  V  F  D  I  I  N  S  T  N  P  E  :  T  D  S  D  L  R  L  A  C  L  L  L  Y  A  F  D  C  K  D  N  F  W  Q  L  Y  G  D  F  L  P  S  A  D  E  C  T  S  F  L  L  A  T  E  :  E  D  L  L  E  L  Q  D  E  K  L  A  S  T  M  R  E  Q  Q  N  R  A  L  E  F  W  E  K  N  W  :  H  S  A  V  P  L  K  I  K  R  L  A  Q  D  P  E  R  F  I  W  A  M  S  I  A  Q  S  R  C  I  S  M  Q  T  R  I  G  S  L  V  Q  E  A  N  M  L  V  P  Y  A   : D  M  M  N  H  S  F  Q  P  N  C  F  F  H  W  R  F  K  D  R  M  L  E  V  M  I  N  A  G  Q  K  I  R  K  G  D  E  :  M  T  V  N  Y  M  A  G  Q  K  N  D  L  F  M  Q  R  Y  G  F  S  S  P  V  :  N  P  W  D  V  I  H  F  T  G  D  A  K  I  H  L  D  T  F  L  S  V  F  N  I  S  G  L  P  G  E  Y  Y  H  N   : T  G  K  L  S  N  D  G  D  R  F  V  D  G  A  I  I  A  A  A  R  T  L  P  T  W  S  D  G  D  L  P  P  I  P  S  L  E  R  K  A  V  K  E  L  Q  E  E  C  H  Q  M  L  A  E  F  P  T  T  S  D  E  D  Q  K  I  L   : D  S  M  P  E  C  R  R  T  F  E  A  A  I  K :   Y  R  L  H  R  K  L  L  I  E  K  V  I  Q  A  L  D  I  Y  Q  D  R  I  L  F  *  T  *  I  T  A  G  V  E  A  I  F  T  R  N  H  V  A  I  E  D  G  R  Q  D  Y  G  S  I  S  A  M  Q  K  A  L  S  I  T  I  A  F  A  T  F  *  G  L  L  L  G  V  G  V  G  S  S  *  *  W  C  I  G  G  K  *  L  I  P  L  V  L  E  R  Y  E  V  K  K  N  E  K  F  S  I  E  I  M  M  K  M  K  D  S  F  G  G  Y  V  *  *  Q  V  E  G  L  F  C  M  N  E  I  Y  E  F  S  L  T </first_frame>
            <second_frame>  P  L  G  T  L  S  L  T  V  E  W  I  T  F  Q  E  P  K  F  H  R  C  M  N  L  L  Y  *  N  S  T  K  F  L  A  H  S  Q  E  W  F  L  P  P  F  *  F  S  N  R  R  T  S  S  T  S  Q  S  F  T  I  S :   Y  G  E  V  C  S  M  D  V  L  H  H  C  R  N  N  L  F  W  Y  V  I  V  T  R  E  T  D  L  *  E  F  L  Q  V  L  M  V  L  L  L  L  P  L  W  R  P  M  I  L  L  R  L  L  L  H  F  L  F  L  H  P  L  L  N  P  K  I  L  P  L  L  S :   W  N  W  Q  I  L  I  S  T  K  *  D  M  L  E  V  F  E  P  T  G  L  N  S  G  R  D  Q  M  G  M  E  C  L  L  P  K  T  W  N  L  S  V  E  L  G :   *  *  W  K  F  L  *  N  L  C  *  P  *  A  K  S  F  L  G  C  F  F  Q  I  L  Y  L  *  D  I  Q  Y  S  T  L  S  I  Q  P  I  P  R :   Q  I  R  T  *  G  W  R  A  F  F  Y  M  L  L  I  A  R  T  T  F  G  S  Y  T  E  T  S  C  L  V  L  M  N  A  L  A  F  F  *  L  P  R :   R  I  F  W  S  C  K  T  R  S  L  L  L  P  *  E  N  S  K  I  E  H  L  S  F  G  R  K  T  G :   I  L  Q  Y  L  S  K  L  S  V  L  L  R  I  L  R  D  L  F  G  Q  *  V  *  H  N  L  D  A  S  A  C  K  Q  E  L  V  H  W  F  K  K  Q  I  C  W  Y  L  M  L  :  T  *  *  I  I  L  F  S  Q  I  A  F  S  I  G  A  S  R  T  A  C  W  R  *  *  *  M  Q  D  K  K  L  E  K  E  M  R :   *  L  L  I  T  W  L  D  R  R  M  T  Y  L  C  R  D  M  V  S  H  R  L  * :   I  L  G  M  S  F  I  S  P  E  M  P  K  F  I  *  T  P  F  Y  R  S  L  T  Y  L  A  S  L  E  N  I  T  T  T  :  Q  V  S  Y  Q  M  M  E  T  D  S  S  M  E  Q  *  *  Q  P  Q  E  R  C  P  L  G  Q  M  E  I  S  L  Q  F  Q  V  *  R  G  K  Q  *  R  S  C  K  K  N  A  T  R  C  L  Q  N  F  P  Q  L  L  T  K  T  R  K  S  *  :  I  R  C  L  N  A  G  E  H  S  K  Q  Q  *   : S  I  D  Y  I  G  N  Y  *  *  R  R  L  Y  R  P  W  T  F  T  K  T  G  F  C  S  K  H  E  *  Q  Q  E  L  K  Q  S  L  P  E  I  M  *  P  *  K  T  G  V  K  I  M  V  P  F  Q  L  C  R  K  L  Y  L  S  Q  *  L  L  Q  H  F  E  G  F  C  W  G  W  V  *  E  V  A  S  N  G  V  *  V  E  N  D  L  Y  H  *  F  W  K  D  M  K  *  R  K  M  R  S  S  L  *  K  S  *  *  K  *  R  I  A  L  V  D  M  F  D  N  K  *  K  G  S  F  A  *  M  K  Y  M  N  S  L  *   </second_frame>
            <third_frame>   P  W  A  L  S  H  *  Q  *  S  G  *  R  F  K  N  P  N  S  I  D  V  *  I  F  F  T  E  I  P  L  N  F  *  L  T  L  K  N  G  F  F  H  H  S  N  S  A  T  D  E  L  L  P  P  A  R  A  S  P  S   : A  M  E  R  S  A  A  W  M  C  C  I  I  A  E  T  T  Y  F  G  M  *  *  *  Q  E  K  Q  T  F  E  S  F  F  K  C  *  W  C  C  Y  F  F  H  F  G  G  L  *  F  F  S  V  S  F  C  I  S  S  F  Y  T  P  F  S  T  P  R  Y  S  R  F  S   : V  G  T  G  R  S  *  F  L  Q  N  R  I  C  *  K  F  S  S  L  R  D  *  I  Q  G  G  T  R  W  V  W  S  V  C  F  Q  R  R  G  T  S  P  S  S  *   : G  N  N  G  N  S  F  R  T  Y  V  N  H  K  Q  K  A  S  L  D  V  F  S  R  Y  Y  T  C  R  T  S  S  I  R  H  Y  Q  F  N  Q  S  R   : D  R  F  G  L  E  V  G  V  P  S  F  I  C  F  *  L  Q  G  Q  L  L  A  A  I  R  R  L  L  A  *  C  *  *  M  H  *  L  S  S  S  Y  R   : G  G  S  F  G  V  A  R  R  E  A  C  F  Y  H  E  R  T  A  K  S  S  T  *  V  L  G  E  K  L   : A  F  C  S  T  S  Q  N  *  A  S  C  S  G  S  *  E  I  Y  L  G  N  E  Y  S  T  I  S  M  H  Q  H  A  N  K  N  W  F  T  G  S  R  S  K  Y  V  G  T  L  C  * :   H  D  E  S  F  F  S  A  K  L  L  F  P  L  A  L  Q  G  P  H  A  G  G  D  D  K  C  R  T  K  N  *  K  R  R  *   : D  D  C  *  L  H  G  W  T  E  E  *  L  I  Y  A  E  I  W  F  L  I  A  C   : E  S  L  G  C  H  S  F  H  R  R  C  Q  N  S  S  R  H  L  F  I  G  L  *  H  I  W  P  P  W  R  I  L  P  Q  H :   R  *  A  I  K  *  W  R  Q  I  R  R  W  S  N  N  S  S  R  K  N  V  A  H  L  V  R  W  R  S  P  S  N  S  K  S  R  E  E  S  S  E  G  A  A  R  R  M  P  P  D  A  C  R  I  S  H  N  F  *  R  R  P  E  N  P  R :   F  D  A  *  M  Q  E  N  I  R  S  S  N  K  :  V  *  I  T  S  E  I  T  D  R  E  G  Y  T  G  L  G  H  L  P  R  Q  D  S  V  L  N  M  N  N  S  R  S  *  S  N  L  Y  Q  K  S  C  S  H  R  R  R  A  S  R  L  W  F  H  F  S  Y  A  E  S  F  I  Y  H  N  S  F  C  N  I  L  R  A  F  V  G  G  G  C  R  K  *  L  V  M  V  Y  R  W  K  M  T  Y  T  I  S  F  G  K  I  *  S  E  E  K  *  E  V  L  Y  R  N  H  D  E  N  E  G  *  L  W  W  I  C  L  I  T  S  R  R  A  L  L  H  E  *  N  I  *  I  L  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16426" stop="16337"/>
                    <exon start="16241" stop="16023"/>
                    <exon start="15129" stop="14992"/>
                    <exon start="14515" stop="14390"/>
                    <exon start="14145" stop="14017"/>
                    <exon start="13475" stop="13386"/>
                    <exon start="13305" stop="13155"/>
                    <exon start="11445" stop="11336"/>
                    <exon start="10662" stop="10591"/>
                    <exon start="9943" stop="9838"/>
                    <exon start="9744" stop="9544"/>
                    <exon start="9207" stop="9165"/>
                    <exon start="9060" stop="8982"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1551</number_coding_nucleotides>
                  <number_encoded_amino_acids>517</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSSLSRMVSSTILIQQPTNFFHQPELHHQLWRGLQHGCVASLQKQPILVCNSNKRNRPLRVSSSANGAVTSSTLEAYDSSPSPSAFPLFTPPSQPQDTPASQLELADPDFYKIGYVRSFRAYGIEFREGPDGYGVFASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPVGHPVFDIINSTNPETDSDLRLACLLLYAFDCKDNFWQLYGDFLPSADECTSFLLATEEDLLELQDEKLASTMREQQNRALEFWEKNWHSAVPLKIKRLAQDPERFIWAMSIAQSRCISMQTRIGSLVQEANMLVPYADMMNHSFQPNCFFHWRFKDRMLEVMINAGQKIRKGDEMTVNYMAGQKNDLFMQRYGFSSPVNPWDVIHFTGDAKIHLDTFLSVFNISGLPGEYYHNTGKLSNDGDRFVDGAIIAAARTLPTWSDGDLPPIPSLERKAVKELQEECHQMLAEFPTTSDEDQKILDSMPECRRTFEAAIKYRLHRKLLIEKVIQALDIYQDRILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26968" PGL_stop="27524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26968" e_stop="27274"/>
            <exon e_start="27401" e_stop="27524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26968" e_stop="27274" e_length="307"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="27275" i_stop="27400" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27401" e_stop="27524" e_length="124"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26968" stop="27274"/>
              <exon start="27401" stop="27524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604253" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCGTAATGATGAAGTTATGACCGATACGGATTATTTCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATGAGGCAGCGCTTGAGCTTGTTGACCCTTCATCAAGTGTTAAGGACGAAATAGAAGAAGATCTGGAGAGCGGACGATTATTTGTTCGTAATCTTCCATACACCACTAC : GGAAGAGGAGCTGGAAGAACACTTTAGAGCATTTGGCAATGTCTCACAGGTTCATATTGTTGTTGACAAAGATACAAAGCGGTCCAAAGGAATTGCATATGTTCTCTATCCATTACCAGAATCT</gDNA_template>
            <first_frame> P  V  M  M  K  L  *  P  I  R  I  I  S  K  V  E  *  G  K  I  G  L  I  Q  K  V  V  K  T  M  V  V  I  M  K  V  T  R  A  V  K  M  Q  M  L  V  I  S  L  N  L  M  I  Q  R  N  F  *  V  M  V  S  P  D  L  T  M  R  Q  R  L  S  L  L  T  L  H  Q  V  L  R  T  K  *  K  K  I  W  R  A  D  D  Y  L  F  V  I  F  H  T  P  L   : R  K  R  S  W  K  N  T  L  E  H  L  A  M  S  H  R  F  I  L  L  L  T  K  I  Q  S  G  P  K  E  L  H  M  F  S  I  H  Y  Q  N   </first_frame>
            <second_frame>  P  *  *  *  S  Y  D  R  Y  G  L  F  Q  K  *  S  E  E  R  L  V  *  F  R  K  *  *  R  R  W  *  *  *  *  K  *  Q  E  Q  *  R  C  K  C  W  *  Y  P  *  T  *  *  Y  R  G  I  F  E  *  W  S  H  Q  I  *  Q  *  G  S  A  *  A  C  *  P  F  I  K  C  *  G  R  N  R  R  R  S  G  E  R  T  I  I  C  S  *  S  S  I  H  H  Y  :  G  R  G  A  G  R  T  L  *  S  I  W  Q  C  L  T  G  S  Y  C  C  *  Q  R  Y  K  A  V  Q  R  N  C  I  C  S  L  S  I  T  R  I  </second_frame>
            <third_frame>   R  N  D  E  V  M  T  D  T  D  Y  F  K  S  R  V  R  K  D  W  S  D  S  E  S  S  E  D  D  G  S  D  N  E  S  D  K  S  S  E  D  A  N  A  G  N  I  L  E  P  D  D  T  E  E  F  L  S  D  G  L  T  R  S  N  N  E  A  A  L  E  L  V  D  P  S  S  S  V  K  D  E  I  E  E  D  L  E  S  G  R  L  F  V  R  N  L  P  Y  T  T  T :   E  E  E  L  E  E  H  F  R  A  F  G  N  V  S  Q  V  H  I  V  V  D  K  D  T  K  R  S  K  G  I  A  Y  V  L  Y  P  L  P  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26970" stop="27274"/>
                    <exon start="27401" stop="27524"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNDEVMTDTDYFKSRVRKDWSDSESSEDDGSDNESDKSSEDANAGNILEPDDTEEFLSDGLTRSNNEAALELVDPSSSVKDEIEEDLESGRLFVRNLPYTTTEEELEEHFRAFGNVSQVHIVVDKDTKRSKGIAYVLYPLPES</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="38571" PGL_stop="39743"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38571" e_stop="38686"/>
            <exon e_start="39119" e_stop="39743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38571" e_stop="38686" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="38687" i_stop="39118" i_length="432"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="39119" e_stop="39743" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38571" stop="38686"/>
              <exon start="39119" stop="39743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTCCCGCTTCTCTGCAAAAATCCCTCGTCGACGGTAATCATCCTAGCAGACAGAAATTTCCGGCCGTTTTTGAACAGAGAGGGATTTGTTTGGGCACTCCATTGTTTAATCAG : AAATAGAAATGTTAGGCATCACACCGATATTGCCCCTTCCGGCACCCCCGTTGGATGGGAATCTGGGACCAACACCTCTAGCTCAGGTGGTAGAGGAACCAAATGATGTTAAGATGGAAGAGAATGAAGAGGAAAACAATAAGGACAAGGTTCCAGCATCTGTTGCAACACATACGAGAACTATTGGTATCATTTATCCCCCTCCTGATATTAGGAGTATTGTTGACAAGACTTCACAGTTTGTGGCGAAGAATGGTCCGGAATTTGAGAAGAGGATTGTTCTAAATAACGCTGGCAATGCAAAATTCAACTTCCTGAATGCTTCTGATCCTTACCATGCCTATTATCAGCACCGTTTGGCTGAAGCTCGCGCACAGAATCAGGGTTCTGGAGAGCAGCCTACTCAGCCAGAAGACAAAGAAGCAACCCCTGCTCCTACCGCTGATGATGCTGAGGCAACTGCAAAACCTGACCCATCAGCTCAATTTAGACCTGTCAGAAAGGTTCTTGAGCCACCTGAGGCAGAGCAATATACTGTTCGACTCCCTGAAGGGATCACAGGTGAAGAAATGGATATCATAAAGCTGACATCACAATTTGTGGCCAGAAATGGGAAGTCTTTCTT</gDNA_template>
            <first_frame> K  L  P  L  L  C  K  N  P  S  S  T  V  I  I  L  A  D  R  N  F  R  P  F  L  N  R  E  G  F  V  W  A  L  H  C  L  I  R :   N  R  N  V  R  H  H  T  D  I  A  P  S  G  T  P  V  G  W  E  S  G  T  N  T  S  S  S  G  G  R  G  T  K  *  C  *  D  G  R  E  *  R  G  K  Q  *  G  Q  G  S  S  I  C  C  N  T  Y  E  N  Y  W  Y  H  L  S  P  S  *  Y  *  E  Y  C  *  Q  D  F  T  V  C  G  E  E  W  S  G  I  *  E  E  D  C  S  K  *  R  W  Q  C  K  I  Q  L  P  E  C  F  *  S  L  P  C  L  L  S  A  P  F  G  *  S  S  R  T  E  S  G  F  W  R  A  A  Y  S  A  R  R  Q  R  S  N  P  C  S  Y  R  *  *  C  *  G  N  C  K  T  *  P  I  S  S  I  *  T  C  Q  K  G  S  *  A  T  *  G  R  A  I  Y  C  S  T  P  *  R  D  H  R  *  R  N  G  Y  H  K  A  D  I  T  I  C  G  Q  K  W  E  V  F  L </first_frame>
            <second_frame>  S  S  R  F  S  A  K  I  P  R  R  R  *  S  S  *  Q  T  E  I  S  G  R  F  *  T  E  R  D  L  F  G  H  S  I  V  *  S   : E  I  E  M  L  G  I  T  P  I  L  P  L  P  A  P  P  L  D  G  N  L  G  P  T  P  L  A  Q  V  V  E  E  P  N  D  V  K  M  E  E  N  E  E  E  N  N  K  D  K  V  P  A  S  V  A  T  H  T  R  T  I  G  I  I  Y  P  P  P  D  I  R  S  I  V  D  K  T  S  Q  F  V  A  K  N  G  P  E  F  E  K  R  I  V  L  N  N  A  G  N  A  K  F  N  F  L  N  A  S  D  P  Y  H  A  Y  Y  Q  H  R  L  A  E  A  R  A  Q  N  Q  G  S  G  E  Q  P  T  Q  P  E  D  K  E  A  T  P  A  P  T  A  D  D  A  E  A  T  A  K  P  D  P  S  A  Q  F  R  P  V  R  K  V  L  E  P  P  E  A  E  Q  Y  T  V  R  L  P  E  G  I  T  G  E  E  M  D  I  I  K  L  T  S  Q  F  V  A  R  N  G  K  S  F   </second_frame>
            <third_frame>   A  P  A  S  L  Q  K  S  L  V  D  G  N  H  P  S  R  Q  K  F  P  A  V  F  E  Q  R  G  I  C  L  G  T  P  L  F  N  Q  :  K  *  K  C  *  A  S  H  R  Y  C  P  F  R  H  P  R  W  M  G  I  W  D  Q  H  L  *  L  R  W  *  R  N  Q  M  M  L  R  W  K  R  M  K  R  K  T  I  R  T  R  F  Q  H  L  L  Q  H  I  R  E  L  L  V  S  F  I  P  L  L  I  L  G  V  L  L  T  R  L  H  S  L  W  R  R  M  V  R  N  L  R  R  G  L  F  *  I  T  L  A  M  Q  N  S  T  S  *  M  L  L  I  L  T  M  P  I  I  S  T  V  W  L  K  L  A  H  R  I  R  V  L  E  S  S  L  L  S  Q  K  T  K  K  Q  P  L  L  L  P  L  M  M  L  R  Q  L  Q  N  L  T  H  Q  L  N  L  D  L  S  E  R  F  L  S  H  L  R  Q  S  N  I  L  F  D  S  L  K  G  S  Q  V  K  K  W  I  S  *  S  *  H  H  N  L  W  P  E  M  G  S  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38683" stop="38686"/>
                    <exon start="39119" stop="39741"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEIEMLGITPILPLPAPPLDGNLGPTPLAQVVEEPNDVKMEENEEENNKDKVPASVATHTRTIGIIYPPPDIRSIVDKTSQFVAKNGPEFEKRIVLNNAGNAKFNFLNASDPYHAYYQHRLAEARAQNQGSGEQPTQPEDKEATPAPTADDAEATAKPDPSAQFRPVRKVLEPPEAEQYTVRLPEGITGEEMDIIKLTSQFVARNGKSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="40792" PGL_stop="42813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40792" e_stop="41271"/>
            <exon e_start="41368" e_stop="41667"/>
            <exon e_start="41834" e_stop="42076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.926" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.877" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="40792" e_stop="41271" e_length="480"/>
          </exon>
          <intron i_serial="1" don_prob="0.926" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41272" i_stop="41367" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41368" e_stop="41667" e_length="300"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41668" i_stop="41833" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="41834" e_stop="42076" e_length="243"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40792" stop="41271"/>
              <exon start="41368" stop="41667"/>
              <exon start="41834" stop="42076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583168" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCCACTACCTCCACCTCCTGGGCTTGCGCTGAATATTCCTAGGCCTCCTAATACATTCCAGTATTCCACACCTACCATAGCTGGTGCTGCTCCGCCTCCACCTCAACCTCCTATGGTTAACATGATTCCTCAGGTTCGGCCCCCACCTCCTCCCATGCTACAACTACAAGGTCAGCAAAACCTCATGGTCAATCGTCCCCCAATGCCTCCATCAATGGCTATGAGTTCGCATACCCTTACTATTCCACCACCTCCTGGATCACAGTTTACACCTATGGGAGCACCTCGGCCCTTTGTTCCCCACCCGATGTCCCAGCCGGGAATGTCTATGGTCCCGCCTCCTCCTATGCCCCAAGGAATGCCACCACCTCCTCCACCAGAAGAAGCTCCTCCTCTCCCTGAAGAGCCAGAGCCGAAGAGGCAAAAGCTTGACGAGTCTGTTCTCATTCCTGAAGACCAGTTTTTGGCTCAGCATTCG : GGACCTGCAAGGATCAATGTATCTGTGCCGAATACTGATGAAGGGAATCTCAAAGGACAAGTTCTGGAAATCACTGTGCAATCTCTGACCGAAACCATTGCAAGTCTGAAAGAGAAGATTTCTGGGGAGATCCAGCTTCCTGCGAACAAACAAAAGCTGAGTGGAAAGGCTGGTTTTCTCAAGGACAACTTGTCTCTTGCATACTATAATGTTGCTTCTGGAGAAACACTCGGCCTCTCTCTGAGAGAACGTGGTGGGAGAAAGAGATGAATGAGGATTTATTTGACATGGCTTTCCAAG : ATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTCTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAA</gDNA_template>
            <first_frame> R  P  L  P  P  P  P  G  L  A  L  N  I  P  R  P  P  N  T  F  Q  Y  S  T  P  T  I  A  G  A  A  P  P  P  P  Q  P  P  M  V  N  M  I  P  Q  V  R  P  P  P  P  P  M  L  Q  L  Q  G  Q  Q  N  L  M  V  N  R  P  P  M  P  P  S  M  A  M  S  S  H  T  L  T  I  P  P  P  P  G  S  Q  F  T  P  M  G  A  P  R  P  F  V  P  H  P  M  S  Q  P  G  M  S  M  V  P  P  P  P  M  P  Q  G  M  P  P  P  P  P  P  E  E  A  P  P  L  P  E  E  P  E  P  K  R  Q  K  L  D  E  S  V  L  I  P  E  D  Q  F  L  A  Q  H  S  :  G  P  A  R  I  N  V  S  V  P  N  T  D  E  G  N  L  K  G  Q  V  L  E  I  T  V  Q  S  L  T  E  T  I  A  S  L  K  E  K  I  S  G  E  I  Q  L  P  A  N  K  Q  K  L  S  G  K  A  G  F  L  K  D  N  L  S  L  A  Y  Y  N  V  A  S  G  E  T  L  G  L  S  L  R  E  R  G  G  R  K  R  *  M  R  I  Y  L  T  W  L  S  K  :  I  L  A  C  W  R  S  S  M  M  T  T  G  S  L  L  V  L  F  L  *  D  A  M  T  V  G  Y  V  L  L  I  C  V  S  *  H  V  Q  L  L  H  P  L  T  R  A  Q  L  L  F  C  C  I  F  *  V  Q  G  H  F  G  I  R  T  F  L  M  S  N  I  P  Y  N  F  R  G  F  P  W  Q </first_frame>
            <second_frame>  G  H  Y  L  H  L  L  G  L  R  *  I  F  L  G  L  L  I  H  S  S  I  P  H  L  P  *  L  V  L  L  R  L  H  L  N  L  L  W  L  T  *  F  L  R  F  G  P  H  L  L  P  C  Y  N  Y  K  V  S  K  T  S  W  S  I  V  P  Q  C  L  H  Q  W  L  *  V  R  I  P  L  L  F  H  H  L  L  D  H  S  L  H  L  W  E  H  L  G  P  L  F  P  T  R  C  P  S  R  E  C  L  W  S  R  L  L  L  C  P  K  E  C  H  H  L  L  H  Q  K  K  L  L  L  S  L  K  S  Q  S  R  R  G  K  S  L  T  S  L  F  S  F  L  K  T  S  F  W  L  S  I  R :   D  L  Q  G  S  M  Y  L  C  R  I  L  M  K  G  I  S  K  D  K  F  W  K  S  L  C  N  L  *  P  K  P  L  Q  V  *  K  R  R  F  L  G  R  S  S  F  L  R  T  N  K  S  *  V  E  R  L  V  F  S  R  T  T  C  L  L  H  T  I  M  L  L  L  E  K  H  S  A  S  L  *  E  N  V  V  G  E  R  D  E  *  G  F  I  *  H  G  F  P  R :   F  W  H  V  G  D  H  R  *  *  Q  Q  E  A  Y  *  F  Y  S  F  K  M  Q  *  L  *  V  M  F  Y  *  F  V  C  L  N  M  C  S  C  S  T  L  *  L  E  P  S  C  Y  F  V  V  S  F  E  S  K  A  I  L  G  L  E  L  F  *  C  Q  T  F  L  T  I  L  E  A  F  L  G   </second_frame>
            <third_frame>   A  T  T  S  T  S  W  A  C  A  E  Y  S  *  A  S  *  Y  I  P  V  F  H  T  Y  H  S  W  C  C  S  A  S  T  S  T  S  Y  G  *  H  D  S  S  G  S  A  P  T  S  S  H  A  T  T  T  R  S  A  K  P  H  G  Q  S  S  P  N  A  S  I  N  G  Y  E  F  A  Y  P  Y  Y  S  T  T  S  W  I  T  V  Y  T  Y  G  S  T  S  A  L  C  S  P  P  D  V  P  A  G  N  V  Y  G  P  A  S  S  Y  A  P  R  N  A  T  T  S  S  T  R  R  S  S  S  S  P  *  R  A  R  A  E  E  A  K  A  *  R  V  C  S  H  S  *  R  P  V  F  G  S  A  F   : G  T  C  K  D  Q  C  I  C  A  E  Y  *  *  R  E  S  Q  R  T  S  S  G  N  H  C  A  I  S  D  R  N  H  C  K  S  E  R  E  D  F  W  G  D  P  A  S  C  E  Q  T  K  A  E  W  K  G  W  F  S  Q  G  Q  L  V  S  C  I  L  *  C  C  F  W  R  N  T  R  P  L  S  E  R  T  W  W  E  K  E  M  N  E  D  L  F  D  M  A  F  Q   : D  F  G  M  L  A  I  I  D  D  D  N  R  K  L  T  S  S  I  P  L  R  C  N  D  C  R  L  C  S  T  N  L  C  V  L  T  C  A  V  A  P  P  S  N  *  S  P  V  V  I  L  L  Y  L  L  S  P  R  P  F  W  D  *  N  F  S  D  V  K  H  S  L  Q  F  *  R  L  S  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40792" stop="41271"/>
                    <exon start="41368" stop="41637"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPLPPPPGLALNIPRPPNTFQYSTPTIAGAAPPPPQPPMVNMIPQVRPPPPPMLQLQGQQNLMVNRPPMPPSMAMSSHTLTIPPPPGSQFTPMGAPRPFVPHPMSQPGMSMVPPPPMPQGMPPPPPPEEAPPLPEEPEPKRQKLDESVLIPEDQFLAQHSGPARINVSVPNTDEGNLKGQVLEITVQSLTETIASLKEKISGEIQLPANKQKLSGKAGFLKDNLSLAYYNVASGETLGLSLRERGGRKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41709" e_stop="42374"/>
            <exon e_start="42470" e_stop="42813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.858" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="41709" e_stop="42374" e_length="666"/>
          </exon>
          <intron i_serial="1" don_prob="0.858" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42375" i_stop="42469" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="42470" e_stop="42813" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41709" stop="42374"/>
              <exon start="42470" stop="42813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTAAAGAACTCTCCTTTCTTCTTTCATGTTATTTTGGAGATTATACTGGTCTTGTACTTCTAGATTTTCTTTCTGCAATTTAATCAATTTTATCTTTCTGATGGTTGTGGGTATCTACTACAGATTTTGGCATGTTGGCGATCATCGATGATGACAACAGGAAGCTTACTAGTTCTATTCCTTTAAGATGCAATGACTGTAGGTTATGTTCTACTAATTTGTGTGTCTTAACATGTGCAGTTGCTCCACCCTCTAACTAGAGCCCAGTTGTTATTTTGTTGTATCTTTTGAGTCCAAGGCCATTTTGGGATTAGAACTTTTCTGATGTCAAACATTCCTTACAATTTTAGAGGCTTTCCTTGGCAATTAATATTTCAAACTCTTCTGTGGATTTAGGACCTATTTCTGTAGAAGATGTGTGTGTCGTGTTTGGCGATGCTTGTCCCAAGCACACCTGCCTCATATGTGGTGCGTTTTTGGGGCACTTGAGCCCCTTTGTGCAAGTCCTATGTAGCTTCATTCTTTTCATTTGCTTTTGTGTAGTCTGCTATCTGGAGAAAGTGGCTAAGGTTTCTCTGATGCCTTTATTTTATCAACACAGCTTTACCCCTGTTAGAGGCTGTGATGGTTGTATTATGAGGTTCTATCTTGGTAGCAAAAGCAG : TTTGTCCGTGCTTTTGGAGGAGGTTGCAGATTGATGATTGATAAATGATTCATATGTGATCTTTGGGAATGCCAGATAATGTGCCGCCAGTAGTTTTTATTTGTTAATGGGAGTTGGTTTGTTAGCTTATATATGCTTTGTGTGTTTGTCCTGTTTGTATCTTGATCCACCCCATTTTTATGGGGTCCAATTATCTTAACTGCACTTTCAACTGATGATGACAGAACTAGTGACATTTCACAGCTAGGAATGTGATCGACATACTTTTTAAGAAACTGCTTTCTATGGGATCATGTTCTGGCCATGTATTTCTATCTTTGCAGCTTTCCCTTAATAAGCAGAAG</gDNA_template>
            <first_frame> I  *  R  T  L  L  S  S  F  M  L  F  W  R  L  Y  W  S  C  T  S  R  F  S  F  C  N  L  I  N  F  I  F  L  M  V  V  G  I  Y  Y  R  F  W  H  V  G  D  H  R  *  *  Q  Q  E  A  Y  *  F  Y  S  F  K  M  Q  *  L  *  V  M  F  Y  *  F  V  C  L  N  M  C  S  C  S  T  L  *  L  E  P  S  C  Y  F  V  V  S  F  E  S  K  A  I  L  G  L  E  L  F  *  C  Q  T  F  L  T  I  L  E  A  F  L  G  N  *  Y  F  K  L  F  C  G  F  R  T  Y  F  C  R  R  C  V  C  R  V  W  R  C  L  S  Q  A  H  L  P  H  M  W  C  V  F  G  A  L  E  P  L  C  A  S  P  M  *  L  H  S  F  H  L  L  L  C  S  L  L  S  G  E  S  G  *  G  F  S  D  A  F  I  L  S  T  Q  L  Y  P  C  *  R  L  *  W  L  Y  Y  E  V  L  S  W  *  Q  K  Q  :  F  V  R  A  F  G  G  G  C  R  L  M  I  D  K  *  F  I  C  D  L  W  E  C  Q  I  M  C  R  Q  *  F  L  F  V  N  G  S  W  F  V  S  L  Y  M  L  C  V  F  V  L  F  V  S  *  S  T  P  F  L  W  G  P  I  I  L  T  A  L  S  T  D  D  D  R  T  S  D  I  S  Q  L  G  M  *  S  T  Y  F  L  R  N  C  F  L  W  D  H  V  L  A  M  Y  F  Y  L  C  S  F  P  L  I  S  R   </first_frame>
            <second_frame>  F  K  E  L  S  F  L  L  S  C  Y  F  G  D  Y  T  G  L  V  L  L  D  F  L  S  A  I  *  S  I  L  S  F  *  W  L  W  V  S  T  T  D  F  G  M  L  A  I  I  D  D  D  N  R  K  L  T  S  S  I  P  L  R  C  N  D  C  R  L  C  S  T  N  L  C  V  L  T  C  A  V  A  P  P  S  N  *  S  P  V  V  I  L  L  Y  L  L  S  P  R  P  F  W  D  *  N  F  S  D  V  K  H  S  L  Q  F  *  R  L  S  L  A  I  N  I  S  N  S  S  V  D  L  G  P  I  S  V  E  D  V  C  V  V  F  G  D  A  C  P  K  H  T  C  L  I  C  G  A  F  L  G  H  L  S  P  F  V  Q  V  L  C  S  F  I  L  F  I  C  F  C  V  V  C  Y  L  E  K  V  A  K  V  S  L  M  P  L  F  Y  Q  H  S  F  T  P  V  R  G  C  D  G  C  I  M  R  F  Y  L  G  S  K  S  S :   L  S  V  L  L  E  E  V  A  D  *  *  L  I  N  D  S  Y  V  I  F  G  N  A  R  *  C  A  A  S  S  F  Y  L  L  M  G  V  G  L  L  A  Y  I  C  F  V  C  L  S  C  L  Y  L  D  P  P  H  F  Y  G  V  Q  L  S  *  L  H  F  Q  L  M  M  T  E  L  V  T  F  H  S  *  E  C  D  R  H  T  F  *  E  T  A  F  Y  G  I  M  F  W  P  C  I  S  I  F  A  A  F  P  *  *  A  E  </second_frame>
            <third_frame>   L  K  N  S  P  F  F  F  H  V  I  L  E  I  I  L  V  L  Y  F  *  I  F  F  L  Q  F  N  Q  F  Y  L  S  D  G  C  G  Y  L  L  Q  I  L  A  C  W  R  S  S  M  M  T  T  G  S  L  L  V  L  F  L  *  D  A  M  T  V  G  Y  V  L  L  I  C  V  S  *  H  V  Q  L  L  H  P  L  T  R  A  Q  L  L  F  C  C  I  F  *  V  Q  G  H  F  G  I  R  T  F  L  M  S  N  I  P  Y  N  F  R  G  F  P  W  Q  L  I  F  Q  T  L  L  W  I  *  D  L  F  L  *  K  M  C  V  S  C  L  A  M  L  V  P  S  T  P  A  S  Y  V  V  R  F  W  G  T  *  A  P  L  C  K  S  Y  V  A  S  F  F  S  F  A  F  V  *  S  A  I  W  R  K  W  L  R  F  L  *  C  L  Y  F  I  N  T  A  L  P  L  L  E  A  V  M  V  V  L  *  G  S  I  L  V  A  K  A   : V  C  P  C  F  W  R  R  L  Q  I  D  D  *  *  M  I  H  M  *  S  L  G  M  P  D  N  V  P  P  V  V  F  I  C  *  W  E  L  V  C  *  L  I  Y  A  L  C  V  C  P  V  C  I  L  I  H  P  I  F  M  G  S  N  Y  L  N  C  T  F  N  *  *  *  Q  N  *  *  H  F  T  A  R  N  V  I  D  I  L  F  K  K  L  L  S  M  G  S  C  S  G  H  V  F  L  S  L  Q  L  S  L  N  K  Q  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42061" stop="42374"/>
                    <exon start="42470" stop="42503"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLSLAINISNSSVDLGPISVEDVCVVFGDACPKHTCLICGAFLGHLSPFVQVLCSFILFICFCVVCYLEKVAKVSLMPLFYQHSFTPVRGCDGCIMRFYLGSKSSLSVLLEEVAD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="47495" PGL_stop="43361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47495" e_stop="47011"/>
            <exon e_start="46467" e_stop="45775"/>
            <exon e_start="45680" e_stop="45592"/>
            <exon e_start="45449" e_stop="45380"/>
            <exon e_start="45229" e_stop="45146"/>
            <exon e_start="45045" e_stop="44969"/>
            <exon e_start="44851" e_stop="44770"/>
            <exon e_start="44632" e_stop="44550"/>
            <exon e_start="44463" e_stop="44400"/>
            <exon e_start="44300" e_stop="44172"/>
            <exon e_start="43964" e_stop="43861"/>
            <exon e_start="43773" e_stop="43361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="0.998"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.870" e_score="1.000"/>
          <exon-intron don_prob="0.515" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.670" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="47495" e_stop="47011" e_length="485"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="47010" i_stop="46468" i_length="543"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46467" e_stop="45775" e_length="693"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="45774" i_stop="45681" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45680" e_stop="45592" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45591" i_stop="45450" i_length="142"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45449" e_stop="45380" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.916" acc_prob="0.870">
            <gDNA_intron_boundary i_start="45379" i_stop="45230" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45229" e_stop="45146" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.515" acc_prob="0.898">
            <gDNA_intron_boundary i_start="45145" i_stop="45046" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45045" e_stop="44969" e_length="77"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.952">
            <gDNA_intron_boundary i_start="44968" i_stop="44852" i_length="117"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="44851" e_stop="44770" e_length="82"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.979">
            <gDNA_intron_boundary i_start="44769" i_stop="44633" i_length="137"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="44632" e_stop="44550" e_length="83"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.670">
            <gDNA_intron_boundary i_start="44549" i_stop="44464" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="44463" e_stop="44400" e_length="64"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.890">
            <gDNA_intron_boundary i_start="44399" i_stop="44301" i_length="99"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="44300" e_stop="44172" e_length="129"/>
          </exon>
          <intron i_serial="10" don_prob="0.982" acc_prob="0.983">
            <gDNA_intron_boundary i_start="44171" i_stop="43965" i_length="207"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="43964" e_stop="43861" e_length="104"/>
          </exon>
          <intron i_serial="11" don_prob="0.975" acc_prob="0.898">
            <gDNA_intron_boundary i_start="43860" i_stop="43774" i_length="87"/>
          </intron>
          <exon e_serial="12" e_score="0.998">
            <gDNA_exon_boundary e_start="43773" e_stop="43361" e_length="413"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47495" stop="47011"/>
              <exon start="46467" stop="45775"/>
              <exon start="45680" stop="45592"/>
              <exon start="45449" stop="45380"/>
              <exon start="45229" stop="45146"/>
              <exon start="45045" stop="44969"/>
              <exon start="44851" stop="44770"/>
              <exon start="44632" stop="44550"/>
              <exon start="44463" stop="44400"/>
              <exon start="44300" stop="44172"/>
              <exon start="43964" stop="43861"/>
              <exon start="43773" stop="43361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581876" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACACAAAAACTCCAAAAAGTCTCCTCTGTTCACAGAGTCTTCTCTTGACACTTTCTTGATTTTTGGCCCCTTATGTAATCCATCTGTTTCTTTCTCCTCTTTACACCTCTTACAAACTTTTTGAAACCCCAAACATTACAAATTGTACCAATACTAAATATGCTTGTACCTTTACACTCTCCTGCAAACATGGCTGCTCTGTTTTTTCGACTTCTGTTTTTTTCCTTGATAGTATCGAATGTTGTGCTAGTTCAGGCAAGGTTTATAGTTGAGAAGAACAGTATAAGTGTTCTGTCTCCTTATTCAATGCACTCGAAGCATGATGCCTCTATTGGTAATTTTGGTGTCCCTGATTATGGTGGTTCTTTAGTTGGAACTGTTGTTTATCCTAGTAAAGGTGCTAATGGCTGCGCTGAATTTGATGGTGATAAACCCTTCAAATCTAAGGGTCATCGTCCTAATATCCTTCTTCTTGATCGTGGAG : ACTGCTATTTTGCTTTGAAGGTATGGAATGGGCAACAAGCTGGAGCAGCTGCAGTACTAGTTGCTGATAGTATAGATGAGGCTCTTATAACTATGGATTCTCCTGAAGAAAGTACGGATGCCAATGGATACATCGAGAAGATTGGTATCCCGTCAGCATTGATTGAAAAGTCGTTTGGTGACGCATTGAAAGAAGCTCTTAAGAAGGGAGAGGAAGTTGTGATCAAAATGGATTGGACGGAGTCAATGCCTCATCCTGATCAGCGAGTTGAGTATGAATTGTGGACTAATAGCAACGATGAGTGTGGGGTTCGTTGTGATGAGCAGATGAATTTCATCAAGAACTTCAAAGGACATGCTCAAATACTTGAGAAGGGCGGTTATACTATGTTCACGCCTCATTATATTACTTGGTACTGTCCTGAAGCTTTCATTCTTAGCAGCCAGTGCAAATCTCAGTGCATTAATCACGGGAGATATTGCGCTCCTGATCCGGAGCAGGACTTTGGGGAGGGGTACCAAGGGAAGGATGTTGTCTTTGAGAACTTGAGGCAGCTTTGCGTGCATAGAGTTGCAAATGAGAGTAGCCGTTCTTGGGTTTGGTGGGACTATGTGACGGATTTTCATATTAGATGTTCAATGAAGCAAAAGCGATACAGCAAAGAATGTGCTGAGGAGGTCATGAAATCACTTG : ATCTACCGGTTGACAAGATAAAGAAATGCATGGGCGATCCAGAGGCTAATGTTGAAAATGATGTGTTGAAGACTGAGCAAGACCTCCAG : GTTGGCCGAGGACCTCGTGGAGATGTGACAATCTTACCAACAATGGTCATCAATGATATTCAATATCGAG : GGAAATTGGAGAGGACTGCTGTTTTAAAAGCCATATGTGCTGGTTTTAAGGAAACAACTGAACCTTCGATATGTTTAAGTGGAG : ATCTTGAAACAAACCAGTGCCTAGAAAGGAACGGTGGCTGTTGGCGGGATCCTAAATCTAACATAACTGCCTGCAAG : GATACATATAGAGGAAGAGTTTGTGAGTGCCCTTTGGTGAACGGCGTTCAGTATAAAGGAGATGGATACACATCTTGTGAAG : CCGTTGGACCTGGAAGGTGTTCGGTAAACAACGGAGGATGCTGGTCAGAAACCAGAAATGGGCAAACATATTCAGCATGTTCA : GAGGGTGAACTATCAGGCTGTAAGTGTCCGTATGGTTTTAAAGGGGATGGCCATAAATGTGAAG : ATGTAGATGAATGCAAGGAAGGACTTGTTTGTCAGTGTGATGGCTGCAGCTGTAAGGACACATGGGGTGGATTCGAGTGTAAGTGCAAAGGAAATCAACTCTACATAATGGAGCATGATACTTGTATAG : AAAGACACTCATCAAAGATCGGACGGGTCCTTATGTTCTCTTTCCTAGCCATTGCAGTGGGGGCTGGTTTAGCTGGTTACACCTTTTACAAGTATAGACTTCGG : TCATACATGGACTCAGAGATTATGGCCATCATGTCGCAGTACATGCCTCTCGACAACCACAATCAGAATCAGGTTGTCCATCATGAAGCTGAACCTCTACAACAGAGCTCGGTATGATGAGTATTTCTGGGAGCTAATGTATGATTTCCCATCCTTCTCTTGGATACTTTTCGACTTATGGATATTGAAGGAGATGAAGAACAGAGTCATATTTAGAGGAAAACCAGATACTTGATGCTGGTTTGCCAACTCTCTAGTCCATAAAGACCTGGCTTTTCCCATTTGTGTATAATAGAGTTTTGAGATGTAAATGCAGGGTTCACTTGTGTTAAAAGGACATATAGAACAAAATATACTTGCGAAGGCAACCCATGGCCTTTTACATTATTCAGCAATTGCATCCTTCTTAAATC</gDNA_template>
            <first_frame> H  T  K  T  P  K  S  L  L  C  S  Q  S  L  L  L  T  L  S  *  F  L  A  P  Y  V  I  H  L  F  L  S  P  L  Y  T  S  Y  K  L  F  E  T  P  N  I  T  N  C  T  N  T  K  Y  A  C  T  F  T  L  S  C  K  H  G  C  S  V  F  S  T  S  V  F  F  L  D  S  I  E  C  C  A  S  S  G  K  V  Y  S  *  E  E  Q  Y  K  C  S  V  S  L  F  N  A  L  E  A  *  C  L  Y  W  *  F  W  C  P  *  L  W  W  F  F  S  W  N  C  C  L  S  *  *  R  C  *  W  L  R  *  I  *  W  *  *  T  L  Q  I  *  G  S  S  S  *  Y  P  S  S  *  S  W  R :   L  L  F  C  F  E  G  M  E  W  A  T  S  W  S  S  C  S  T  S  C  *  *  Y  R  *  G  S  Y  N  Y  G  F  S  *  R  K  Y  G  C  Q  W  I  H  R  E  D  W  Y  P  V  S  I  D  *  K  V  V  W  *  R  I  E  R  S  S  *  E  G  R  G  S  C  D  Q  N  G  L  D  G  V  N  A  S  S  *  S  A  S  *  V  *  I  V  D  *  *  Q  R  *  V  W  G  S  L  *  *  A  D  E  F  H  Q  E  L  Q  R  T  C  S  N  T  *  E  G  R  L  Y  Y  V  H  A  S  L  Y  Y  L  V  L  S  *  S  F  H  S  *  Q  P  V  Q  I  S  V  H  *  S  R  E  I  L  R  S  *  S  G  A  G  L  W  G  G  V  P  R  E  G  C  C  L  *  E  L  E  A  A  L  R  A  *  S  C  K  *  E  *  P  F  L  G  L  V  G  L  C  D  G  F  S  Y  *  M  F  N  E  A  K  A  I  Q  Q  R  M  C  *  G  G  H  E  I  T  * :   S  T  G  *  Q  D  K  E  M  H  G  R  S  R  G  *  C  *  K  *  C  V  E  D  *  A  R  P  P   : G  W  P  R  T  S  W  R  C  D  N  L  T  N  N  G  H  Q  *  Y  S  I  S  R :   E  I  G  E  D  C  C  F  K  S  H  M  C  W  F  *  G  N  N  *  T  F  D  M  F  K  W  R :   S  *  N  K  P  V  P  R  K  E  R  W  L  L  A  G  S  *  I  *  H  N  C  L  Q   : G  Y  I  *  R  K  S  L  *  V  P  F  G  E  R  R  S  V  *  R  R  W  I  H  I  L  *  S :   R  W  T  W  K  V  F  G  K  Q  R  R  M  L  V  R  N  Q  K  W  A  N  I  F  S  M  F   : R  G  *  T  I  R  L  *  V  S  V  W  F  *  R  G  W  P  *  M  *  R :   C  R  *  M  Q  G  R  T  C  L  S  V  *  W  L  Q  L  *  G  H  M  G  W  I  R  V  *  V  Q  R  K  S  T  L  H  N  G  A  *  Y  L  Y  R :   K  T  L  I  K  D  R  T  G  P  Y  V  L  F  P  S  H  C  S  G  G  W  F  S  W  L  H  L  L  Q  V  *  T  S   : V  I  H  G  L  R  D  Y  G  H  H  V  A  V  H  A  S  R  Q  P  Q  S  E  S  G  C  P  S  *  S  *  T  S  T  T  E  L  G  M  M  S  I  S  G  S  *  C  M  I  S  H  P  S  L  G  Y  F  S  T  Y  G  Y  *  R  R  *  R  T  E  S  Y  L  E  E  N  Q  I  L  D  A  G  L  P  T  L  *  S  I  K  T  W  L  F  P  F  V  Y  N  R  V  L  R  C  K  C  R  V  H  L  C  *  K  D  I  *  N  K  I  Y  L  R  R  Q  P  M  A  F  Y  I  I  Q  Q  L  H  P  S  *  I </first_frame>
            <second_frame>  T  Q  K  L  Q  K  V  S  S  V  H  R  V  F  S  *  H  F  L  D  F  W  P  L  M  *  S  I  C  F  F  L  L  F  T  P  L  T  N  F  L  K  P  Q  T  L  Q  I  V  P  I  L  N  M  L  V  P  L  H  S  P  A  N  M  A  A  L  F  F  R  L  L  F  F  S  L  I  V  S  N  V  V  L  V  Q  A  R  F  I  V  E  K  N  S  I  S  V  L  S  P  Y  S  M  H  S  K  H  D  A  S  I  G  N  F  G  V  P  D  Y  G  G  S  L  V  G  T  V  V  Y  P  S  K  G  A  N  G  C  A  E  F  D  G  D  K  P  F  K  S  K  G  H  R  P  N  I  L  L  L  D  R  G   : D  C  Y  F  A  L  K  V  W  N  G  Q  Q  A  G  A  A  A  V  L  V  A  D  S  I  D  E  A  L  I  T  M  D  S  P  E  E  S  T  D  A  N  G  Y  I  E  K  I  G  I  P  S  A  L  I  E  K  S  F  G  D  A  L  K  E  A  L  K  K  G  E  E  V  V  I  K  M  D  W  T  E  S  M  P  H  P  D  Q  R  V  E  Y  E  L  W  T  N  S  N  D  E  C  G  V  R  C  D  E  Q  M  N  F  I  K  N  F  K  G  H  A  Q  I  L  E  K  G  G  Y  T  M  F  T  P  H  Y  I  T  W  Y  C  P  E  A  F  I  L  S  S  Q  C  K  S  Q  C  I  N  H  G  R  Y  C  A  P  D  P  E  Q  D  F  G  E  G  Y  Q  G  K  D  V  V  F  E  N  L  R  Q  L  C  V  H  R  V  A  N  E  S  S  R  S  W  V  W  W  D  Y  V  T  D  F  H  I  R  C  S  M  K  Q  K  R  Y  S  K  E  C  A  E  E  V  M  K  S  L   : D  L  P  V  D  K  I  K  K  C  M  G  D  P  E  A  N  V  E  N  D  V  L  K  T  E  Q  D  L  Q  :  V  G  R  G  P  R  G  D  V  T  I  L  P  T  M  V  I  N  D  I  Q  Y  R   : G  K  L  E  R  T  A  V  L  K  A  I  C  A  G  F  K  E  T  T  E  P  S  I  C  L  S  G   : D  L  E  T  N  Q  C  L  E  R  N  G  G  C  W  R  D  P  K  S  N  I  T  A  C  K  :  D  T  Y  R  G  R  V  C  E  C  P  L  V  N  G  V  Q  Y  K  G  D  G  Y  T  S  C  E   : A  V  G  P  G  R  C  S  V  N  N  G  G  C  W  S  E  T  R  N  G  Q  T  Y  S  A  C  S  :  E  G  E  L  S  G  C  K  C  P  Y  G  F  K  G  D  G  H  K  C  E   : D  V  D  E  C  K  E  G  L  V  C  Q  C  D  G  C  S  C  K  D  T  W  G  G  F  E  C  K  C  K  G  N  Q  L  Y  I  M  E  H  D  T  C  I   : E  R  H  S  S  K  I  G  R  V  L  M  F  S  F  L  A  I  A  V  G  A  G  L  A  G  Y  T  F  Y  K  Y  R  L  R  :  S  Y  M  D  S  E  I  M  A  I  M  S  Q  Y  M  P  L  D  N  H  N  Q  N  Q  V  V  H  H  E  A  E  P  L  Q  Q  S  S  V  *  *  V  F  L  G  A  N  V  *  F  P  I  L  L  L  D  T  F  R  L  M  D  I  E  G  D  E  E  Q  S  H  I  *  R  K  T  R  Y  L  M  L  V  C  Q  L  S  S  P  *  R  P  G  F  S  H  L  C  I  I  E  F  *  D  V  N  A  G  F  T  C  V  K  R  T  Y  R  T  K  Y  T  C  E  G  N  P  W  P  F  T  L  F  S  N  C  I  L  L  K   </second_frame>
            <third_frame>   H  K  N  S  K  K  S  P  L  F  T  E  S  S  L  D  T  F  L  I  F  G  P  L  C  N  P  S  V  S  F  S  S  L  H  L  L  Q  T  F  *  N  P  K  H  Y  K  L  Y  Q  Y  *  I  C  L  Y  L  Y  T  L  L  Q  T  W  L  L  C  F  F  D  F  C  F  F  P  *  *  Y  R  M  L  C  *  F  R  Q  G  L  *  L  R  R  T  V  *  V  F  C  L  L  I  Q  C  T  R  S  M  M  P  L  L  V  I  L  V  S  L  I  M  V  V  L  *  L  E  L  L  F  I  L  V  K  V  L  M  A  A  L  N  L  M  V  I  N  P  S  N  L  R  V  I  V  L  I  S  F  F  L  I  V  E  :  T  A  I  L  L  *  R  Y  G  M  G  N  K  L  E  Q  L  Q  Y  *  L  L  I  V  *  M  R  L  L  *  L  W  I  L  L  K  K  V  R  M  P  M  D  T  S  R  R  L  V  S  R  Q  H  *  L  K  S  R  L  V  T  H  *  K  K  L  L  R  R  E  R  K  L  *  S  K  W  I  G  R  S  Q  C  L  I  L  I  S  E  L  S  M  N  C  G  L  I  A  T  M  S  V  G  F  V  V  M  S  R  *  I  S  S  R  T  S  K  D  M  L  K  Y  L  R  R  A  V  I  L  C  S  R  L  I  I  L  L  G  T  V  L  K  L  S  F  L  A  A  S  A  N  L  S  A  L  I  T  G  D  I  A  L  L  I  R  S  R  T  L  G  R  G  T  K  G  R  M  L  S  L  R  T  *  G  S  F  A  C  I  E  L  Q  M  R  V  A  V  L  G  F  G  G  T  M  *  R  I  F  I  L  D  V  Q  *  S  K  S  D  T  A  K  N  V  L  R  R  S  *  N  H  L  :  I  Y  R  L  T  R  *  R  N  A  W  A  I  Q  R  L  M  L  K  M  M  C  *  R  L  S  K  T  S  R :   L  A  E  D  L  V  E  M  *  Q  S  Y  Q  Q  W  S  S  M  I  F  N  I  E  :  G  N  W  R  G  L  L  F  *  K  P  Y  V  L  V  L  R  K  Q  L  N  L  R  Y  V  *  V  E  :  I  L  K  Q  T  S  A  *  K  G  T  V  A  V  G  G  I  L  N  L  T  *  L  P  A  R :   I  H  I  E  E  E  F  V  S  A  L  W  *  T  A  F  S  I  K  E  M  D  T  H  L  V  K  :  P  L  D  L  E  G  V  R  *  T  T  E  D  A  G  Q  K  P  E  M  G  K  H  I  Q  H  V  Q :   R  V  N  Y  Q  A  V  S  V  R  M  V  L  K  G  M  A  I  N  V  K  :  M  *  M  N  A  R  K  D  L  F  V  S  V  M  A  A  A  V  R  T  H  G  V  D  S  S  V  S  A  K  E  I  N  S  T  *  W  S  M  I  L  V  *  :  K  D  T  H  Q  R  S  D  G  S  L  C  S  L  S  *  P  L  Q  W  G  L  V  *  L  V  T  P  F  T  S  I  D  F  G :   H  T  W  T  Q  R  L  W  P  S  C  R  S  T  C  L  S  T  T  T  I  R  I  R  L  S  I  M  K  L  N  L  Y  N  R  A  R  Y  D  E  Y  F  W  E  L  M  Y  D  F  P  S  F  S  W  I  L  F  D  L  W  I  L  K  E  M  K  N  R  V  I  F  R  G  K  P  D  T  *  C  W  F  A  N  S  L  V  H  K  D  L  A  F  P  I  C  V  *  *  S  F  E  M  *  M  Q  G  S  L  V  L  K  G  H  I  E  Q  N  I  L  A  K  A  T  H  G  L  L  H  Y  S  A  I  A  S  F  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47416" stop="47011"/>
                    <exon start="46467" stop="45775"/>
                    <exon start="45680" stop="45592"/>
                    <exon start="45449" stop="45380"/>
                    <exon start="45229" stop="45146"/>
                    <exon start="45045" stop="44969"/>
                    <exon start="44851" stop="44770"/>
                    <exon start="44632" stop="44550"/>
                    <exon start="44463" stop="44400"/>
                    <exon start="44300" stop="44172"/>
                    <exon start="43964" stop="43861"/>
                    <exon start="43773" stop="43657"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1995</number_coding_nucleotides>
                  <number_encoded_amino_acids>665</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SICFFLLFTPLTNFLKPQTLQIVPILNMLVPLHSPANMAALFFRLLFFSLIVSNVVLVQARFIVEKNSISVLSPYSMHSKHDASIGNFGVPDYGGSLVGTVVYPSKGANGCAEFDGDKPFKSKGHRPNILLLDRGDCYFALKVWNGQQAGAAAVLVADSIDEALITMDSPEESTDANGYIEKIGIPSALIEKSFGDALKEALKKGEEVVIKMDWTESMPHPDQRVEYELWTNSNDECGVRCDEQMNFIKNFKGHAQILEKGGYTMFTPHYITWYCPEAFILSSQCKSQCINHGRYCAPDPEQDFGEGYQGKDVVFENLRQLCVHRVANESSRSWVWWDYVTDFHIRCSMKQKRYSKECAEEVMKSLDLPVDKIKKCMGDPEANVENDVLKTEQDLQVGRGPRGDVTILPTMVINDIQYRGKLERTAVLKAICAGFKETTEPSICLSGDLETNQCLERNGGCWRDPKSNITACKDTYRGRVCECPLVNGVQYKGDGYTSCEAVGPGRCSVNNGGCWSETRNGQTYSACSEGELSGCKCPYGFKGDGHKCEDVDECKEGLVCQCDGCSCKDTWGGFECKCKGNQLYIMEHDTCIERHSSKIGRVLMFSFLAIAVGAGLAGYTFYKYRLRSYMDSEIMAIMSQYMPLDNHNQNQVVHHEAEPLQQSSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="58936" PGL_stop="54909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58936" e_stop="58858"/>
            <exon e_start="58777" e_stop="58553"/>
            <exon e_start="57358" e_stop="57230"/>
            <exon e_start="57091" e_stop="57035"/>
            <exon e_start="56894" e_stop="56802"/>
            <exon e_start="56553" e_stop="56351"/>
            <exon e_start="56232" e_stop="56141"/>
            <exon e_start="55957" e_stop="55743"/>
            <exon e_start="55663" e_stop="55474"/>
            <exon e_start="55374" e_stop="54909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58936" e_stop="58858" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.964">
            <gDNA_intron_boundary i_start="58857" i_stop="58778" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58777" e_stop="58553" e_length="225"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="58552" i_stop="57359" i_length="1194"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57358" e_stop="57230" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57229" i_stop="57092" i_length="138"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57091" e_stop="57035" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.783">
            <gDNA_intron_boundary i_start="57034" i_stop="56895" i_length="140"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56894" e_stop="56802" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56801" i_stop="56554" i_length="248"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="56553" e_stop="56351" e_length="203"/>
          </exon>
          <intron i_serial="6" don_prob="0.887" acc_prob="0.966">
            <gDNA_intron_boundary i_start="56350" i_stop="56233" i_length="118"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="56232" e_stop="56141" e_length="92"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.949">
            <gDNA_intron_boundary i_start="56140" i_stop="55958" i_length="183"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55957" e_stop="55743" e_length="215"/>
          </exon>
          <intron i_serial="8" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55742" i_stop="55664" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="55663" e_stop="55474" e_length="190"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.992">
            <gDNA_intron_boundary i_start="55473" i_stop="55375" i_length="99"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="55374" e_stop="54909" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58936" stop="58858"/>
              <exon start="58777" stop="58553"/>
              <exon start="57358" stop="57230"/>
              <exon start="57091" stop="57035"/>
              <exon start="56894" stop="56802"/>
              <exon start="56553" stop="56351"/>
              <exon start="56232" stop="56141"/>
              <exon start="55957" stop="55743"/>
              <exon start="55663" stop="55474"/>
              <exon start="55374" stop="54909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACAAATGCAAAATATCAGTACAATTTGCGTGTATAAAGATAATAAAGCTGCAGTACTATTGTTGATAACTAAAGCAG : AGATCGAAAATGCAGAAGCATAATATTAGTAATGTTTATAACTTGTTCAACATTATGTTGTTGATACTTGTTGGGTTGCCATTGAGCTCGCATGCCAATGATTATTCGGAGAAATATGCAGTGATATTTGACGCTGGAAGCACTGGTAGCAGAGTTCATGTCTTTCGTTTTAACTCAAATTTGGATCTCATCAATATCGGCAATGATCTTGAACTCTTCTTGGCG : ATAAAACCAGGTCTGAGTTCATATGCAGATGATCCAAAGGCAGCTGCAAATTCTCTAAAGCCCCTTCTTGAGAAAGCTGAAGCTGTTATTCCTAAGAATTTACAGTCTCAAACCCCTATTAAAGTTGGG : GCAACTGCAGGGCTGAGGTTATTAAAGGGTGATTCATCTGAAAAGATTCTGCAAGCA : GTAAGAGATATGCTGAAAAATGAAACTACTCTGAGTTACAAGGATGAATGGGTCTCTGTTCTCGAAGGAACTCTAGAAGGTTCTTATTTTTGG : GTTGCTTTGAACTATTTGTATGGGAATTTGGGCAAAAATTACCCAGACACCATTGCTACAATTGATCTTGGAGGTGGATCAGTTCAAATTGCTTATGCTGTCTCAAAACAAAGTGCTATAAATGCTCCAAAGTTACCAAATGGAGACGCTTATGTCCAACAAAAAGCACTTCTTGGAACTAATTATTACCTCTATGTTCACAG : TTTTCTAAATTATGGACTATTAGCAGCTCGAGCTGATATCTTGAAGGCTTCTAAAAATTACACTAGTCCATGCATCGTGGAAGGGCACAATG : GGTACTACACATATAATGGAGTATCTTATAAAGCTGCATCACGAAAACAAGGTCCAAATATCAGAAGATGTAAAGCAATAATTAGAAAATTGCTTCAGATTGATGCACCTTGCAATCACAAAAATTGTTCATTTGCTGGGATTTGGAATGGTGGTGGTGGAGCTGGAACCAAAAATCTCTATATCTCTTCATTTTTCTATGATTATGCTTCTACA : GTTGGTATAGTGGATCCAAAAGAGGCCTATGGTATAACTCAGCCAATACAATACTATAAAGCAGCGACGCTGGCTTGTAAGACTAAGAAGCAAAACATGAAATCGGTATTCCCTAACATTAACGATAAGGACATACCCTTTATCTGCATGGATTTATTATATGAATACACTTTGCTGGTAAATGGATTTG : GTATTGATCCAATAAGAAAGATTACAGTGGTGCATCAAGTTAATTACAAAAATCACCTTGTTGAAGCTGCATGGCCATTAGGCTCTGCTATTGATGCTGTCTCATCCACAACATCAGAAAATATGATTTCATATGTTGGGAGGATAAGTTATTAGTGTTAATTTCATGTTTACTTAAGGACTTTGTTGATTTGTTTTCATGTGTTAAAAATTGATTAGAGCAATTTCTCCTATGGTCGATTTAGTAGGAGCTGCAGCTGTTTCTATTGATTCTCCTTATTTGGTATTTCAAAAATAAATGGTGTTTTTCTTTTTAATTTTCAACTTTAAAATGGAGATTTATGTAAGCAATCTAAAGAGATTATCAAAATCAAGATTTGCTTGTTTATATATAAGGCAGTAAGTTTAGTATTTTCTCAATTATTTCTTGTTGTAATATAGTTATTTAATTTTCACAATTTCATCTT</gDNA_template>
            <first_frame> I  Q  M  Q  N  I  S  T  I  C  V  Y  K  D  N  K  A  A  V  L  L  L  I  T  K  A   : E  I  E  N  A  E  A  *  Y  *  *  C  L  *  L  V  Q  H  Y  V  V  D  T  C  W  V  A  I  E  L  A  C  Q  *  L  F  G  E  I  C  S  D  I  *  R  W  K  H  W  *  Q  S  S  C  L  S  F  *  L  K  F  G  S  H  Q  Y  R  Q  *  S  *  T  L  L  G   : D  K  T  R  S  E  F  I  C  R  *  S  K  G  S  C  K  F  S  K  A  P  S  *  E  S  *  S  C  Y  S  *  E  F  T  V  S  N  P  Y  *  S  W   : G  N  C  R  A  E  V  I  K  G  *  F  I  *  K  D  S  A  S   : S  K  R  Y  A  E  K  *  N  Y  S  E  L  Q  G  *  M  G  L  C  S  R  R  N  S  R  R  F  L  F  L   : G  C  F  E  L  F  V  W  E  F  G  Q  K  L  P  R  H  H  C  Y  N  *  S  W  R  W  I  S  S  N  C  L  C  C  L  K  T  K  C  Y  K  C  S  K  V  T  K  W  R  R  L  C  P  T  K  S  T  S  W  N  *  L  L  P  L  C  S  Q  :  F  S  K  L  W  T  I  S  S  S  S  *  Y  L  E  G  F  *  K  L  H  *  S  M  H  R  G  R  A  Q  W :   V  L  H  I  *  W  S  I  L  *  S  C  I  T  K  T  R  S  K  Y  Q  K  M  *  S  N  N  *  K  I  A  S  D  *  C  T  L  Q  S  Q  K  L  F  I  C  W  D  L  E  W  W  W  W  S  W  N  Q  K  S  L  Y  L  F  I  F  L  *  L  C  F  Y   : S  W  Y  S  G  S  K  R  G  L  W  Y  N  S  A  N  T  I  L  *  S  S  D  A  G  L  *  D  *  E  A  K  H  E  I  G  I  P  *  H  *  R  *  G  H  T  L  Y  L  H  G  F  I  I  *  I  H  F  A  G  K  W  I  W :   Y  *  S  N  K  K  D  Y  S  G  A  S  S  *  L  Q  K  S  P  C  *  S  C  M  A  I  R  L  C  Y  *  C  C  L  I  H  N  I  R  K  Y  D  F  I  C  W  E  D  K  L  L  V  L  I  S  C  L  L  K  D  F  V  D  L  F  S  C  V  K  N  *  L  E  Q  F  L  L  W  S  I  *  *  E  L  Q  L  F  L  L  I  L  L  I  W  Y  F  K  N  K  W  C  F  S  F  *  F  S  T  L  K  W  R  F  M  *  A  I  *  R  D  Y  Q  N  Q  D  L  L  V  Y  I  *  G  S  K  F  S  I  F  S  I  I  S  C  C  N  I  V  I  *  F  S  Q  F  H  L </first_frame>
            <second_frame>  Y  K  C  K  I  S  V  Q  F  A  C  I  K  I  I  K  L  Q  Y  Y  C  *  *  L  K  Q  :  R  S  K  M  Q  K  H  N  I  S  N  V  Y  N  L  F  N  I  M  L  L  I  L  V  G  L  P  L  S  S  H  A  N  D  Y  S  E  K  Y  A  V  I  F  D  A  G  S  T  G  S  R  V  H  V  F  R  F  N  S  N  L  D  L  I  N  I  G  N  D  L  E  L  F  L  A  :  I  K  P  G  L  S  S  Y  A  D  D  P  K  A  A  A  N  S  L  K  P  L  L  E  K  A  E  A  V  I  P  K  N  L  Q  S  Q  T  P  I  K  V  G  :  A  T  A  G  L  R  L  L  K  G  D  S  S  E  K  I  L  Q  A  :  V  R  D  M  L  K  N  E  T  T  L  S  Y  K  D  E  W  V  S  V  L  E  G  T  L  E  G  S  Y  F  W  :  V  A  L  N  Y  L  Y  G  N  L  G  K  N  Y  P  D  T  I  A  T  I  D  L  G  G  G  S  V  Q  I  A  Y  A  V  S  K  Q  S  A  I  N  A  P  K  L  P  N  G  D  A  Y  V  Q  Q  K  A  L  L  G  T  N  Y  Y  L  Y  V  H  S :   F  L  N  Y  G  L  L  A  A  R  A  D  I  L  K  A  S  K  N  Y  T  S  P  C  I  V  E  G  H  N   : G  Y  Y  T  Y  N  G  V  S  Y  K  A  A  S  R  K  Q  G  P  N  I  R  R  C  K  A  I  I  R  K  L  L  Q  I  D  A  P  C  N  H  K  N  C  S  F  A  G  I  W  N  G  G  G  G  A  G  T  K  N  L  Y  I  S  S  F  F  Y  D  Y  A  S  T  :  V  G  I  V  D  P  K  E  A  Y  G  I  T  Q  P  I  Q  Y  Y  K  A  A  T  L  A  C  K  T  K  K  Q  N  M  K  S  V  F  P  N  I  N  D  K  D  I  P  F  I  C  M  D  L  L  Y  E  Y  T  L  L  V  N  G  F   : G  I  D  P  I  R  K  I  T  V  V  H  Q  V  N  Y  K  N  H  L  V  E  A  A  W  P  L  G  S  A  I  D  A  V  S  S  T  T  S  E  N  M  I  S  Y  V  G  R  I  S  Y  *  C  *  F  H  V  Y  L  R  T  L  L  I  C  F  H  V  L  K  I  D  *  S  N  F  S  Y  G  R  F  S  R  S  C  S  C  F  Y  *  F  S  L  F  G  I  S  K  I  N  G  V  F  L  F  N  F  Q  L  *  N  G  D  L  C  K  Q  S  K  E  I  I  K  I  K  I  C  L  F  I  Y  K  A  V  S  L  V  F  S  Q  L  F  L  V  V  I  *  L  F  N  F  H  N  F  I   </second_frame>
            <third_frame>   T  N  A  K  Y  Q  Y  N  L  R  V  *  R  *  *  S  C  S  T  I  V  D  N  *  S  R :   D  R  K  C  R  S  I  I  L  V  M  F  I  T  C  S  T  L  C  C  *  Y  L  L  G  C  H  *  A  R  M  P  M  I  I  R  R  N  M  Q  *  Y  L  T  L  E  A  L  V  A  E  F  M  S  F  V  L  T  Q  I  W  I  S  S  I  S  A  M  I  L  N  S  S  W  R :   *  N  Q  V  *  V  H  M  Q  M  I  Q  R  Q  L  Q  I  L  *  S  P  F  L  R  K  L  K  L  L  F  L  R  I  Y  S  L  K  P  L  L  K  L  G :   Q  L  Q  G  *  G  Y  *  R  V  I  H  L  K  R  F  C  K  Q :   *  E  I  C  *  K  M  K  L  L  *  V  T  R  M  N  G  S  L  F  S  K  E  L  *  K  V  L  I  F  G :   L  L  *  T  I  C  M  G  I  W  A  K  I  T  Q  T  P  L  L  Q  L  I  L  E  V  D  Q  F  K  L  L  M  L  S  Q  N  K  V  L  *  M  L  Q  S  Y  Q  M  E  T  L  M  S  N  K  K  H  F  L  E  L  I  I  T  S  M  F  T   : V  F  *  I  M  D  Y  *  Q  L  E  L  I  S  *  R  L  L  K  I  T  L  V  H  A  S  W  K  G  T  M  :  G  T  T  H  I  M  E  Y  L  I  K  L  H  H  E  N  K  V  Q  I  S  E  D  V  K  Q  *  L  E  N  C  F  R  L  M  H  L  A  I  T  K  I  V  H  L  L  G  F  G  M  V  V  V  E  L  E  P  K  I  S  I  S  L  H  F  S  M  I  M  L  L  Q :   L  V  *  W  I  Q  K  R  P  M  V  *  L  S  Q  Y  N  T  I  K  Q  R  R  W  L  V  R  L  R  S  K  T  *  N  R  Y  S  L  T  L  T  I  R  T  Y  P  L  S  A  W  I  Y  Y  M  N  T  L  C  W  *  M  D  L  :  V  L  I  Q  *  E  R  L  Q  W  C  I  K  L  I  T  K  I  T  L  L  K  L  H  G  H  *  A  L  L  L  M  L  S  H  P  Q  H  Q  K  I  *  F  H  M  L  G  G  *  V  I  S  V  N  F  M  F  T  *  G  L  C  *  F  V  F  M  C  *  K  L  I  R  A  I  S  P  M  V  D  L  V  G  A  A  A  V  S  I  D  S  P  Y  L  V  F  Q  K  *  M  V  F  F  F  L  I  F  N  F  K  M  E  I  Y  V  S  N  L  K  R  L  S  K  S  R  F  A  C  L  Y  I  R  Q  *  V  *  Y  F  L  N  Y  F  L  L  *  Y  S  Y  L  I  F  T  I  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58866" stop="58858"/>
                    <exon start="58777" stop="58553"/>
                    <exon start="57358" stop="57230"/>
                    <exon start="57091" stop="57035"/>
                    <exon start="56894" stop="56802"/>
                    <exon start="56553" stop="56351"/>
                    <exon start="56232" stop="56141"/>
                    <exon start="55957" stop="55743"/>
                    <exon start="55663" stop="55474"/>
                    <exon start="55374" stop="55220"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1365</number_coding_nucleotides>
                  <number_encoded_amino_acids>455</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKQRSKMQKHNISNVYNLFNIMLLILVGLPLSSHANDYSEKYAVIFDAGSTGSRVHVFRFNSNLDLINIGNDLELFLAIKPGLSSYADDPKAAANSLKPLLEKAEAVIPKNLQSQTPIKVGATAGLRLLKGDSSEKILQAVRDMLKNETTLSYKDEWVSVLEGTLEGSYFWVALNYLYGNLGKNYPDTIATIDLGGGSVQIAYAVSKQSAINAPKLPNGDAYVQQKALLGTNYYLYVHSFLNYGLLAARADILKASKNYTSPCIVEGHNGYYTYNGVSYKAASRKQGPNIRRCKAIIRKLLQIDAPCNHKNCSFAGIWNGGGGAGTKNLYISSFFYDYASTVGIVDPKEAYGITQPIQYYKAATLACKTKKQNMKSVFPNINDKDIPFICMDLLYEYTLLVNGFGIDPIRKITVVHQVNYKNHLVEAAWPLGSAIDAVSSTTSENMISYVGRISY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="71341" PGL_stop="68888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71341" e_stop="71264"/>
            <exon e_start="71162" e_stop="71017"/>
            <exon e_start="70524" e_stop="70467"/>
            <exon e_start="69336" e_stop="68888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71341" e_stop="71264" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71162" e_stop="71017" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="70467" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70466" i_stop="69337" i_length="1130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69336" e_stop="68888" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71341" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="70467"/>
              <exon start="69336" stop="68888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCATCGTCGTCCCCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG : GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG : GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCG : AAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATTTCAATGATTGTGCTTCTATTTAGATTTTTGTACCTTTTTGTTTCTCTGAAATTGGTTACTTTGTGTCTGA</gDNA_template>
            <first_frame> L  S  S  S  S  P  K  P  *  P  Q  S  L  P  *  E  L  R  S  Q  F  I  L  E  A  M  :  A  E  V  E  A  D  V  A  T  G  Q  P  R  K  R  T  F  K  K  F  S  Y  R  G  V  D  L  D  S  L  L  D  M  S  T  D  E  L  V  K  L  Y  P  A  R  P  R  R  R :   F  Q  R  G  L  K  R  K  P  M  A  L  I  K  K  L  R  K  A  :  K  R  E  A  P  P  G  E  K  P  E  V  V  R  T  H  L  R  N  M  I  I  V  P  E  M  I  G  S  V  I  G  I  Y  N  G  K  T  F  N  Q  I  E  V  K  P  E  M  I  S  H  Y  L  A  E  F  S  I  S  Y  K  P  V  K  H  G  R  P  G  I  G  A  T  H  S  S  R  F  I  P  L  K  *  F  I  Q  I  C  L  H  G  F  *  *  Y  *  Y  F  C  F  T  A  I  L  M  R  T  V  D  T  E  W  F  F  V  *  D  *  *  F  A  D  T  L  Q  H  F  N  D  C  A  S  I  *  I  F  V  P  F  C  F  S  E  I  G  Y  F  V  S   </first_frame>
            <second_frame>  F  H  R  R  P  Q  N  P  S  R  S  H  F  H  R  S  L  E  A  N  S  F  S  K  P  W :   R  K  L  K  L  M  L  R  P  D  S  Q  G  R  E  H  S  R  S  S  A  T  E  E  *  I  W  I  L  F  L  T  C  L  L  M  S  L  L  S  F  T  L  L  V  L  A  E   : G  S  R  G  V  *  R  G  S  L  W  L  *  S  R  S  C  A  R  R :   N  V  R  P  H  L  V  R  S  Q  R  L  *  E  H  I  *  G  T  *  S  L  F  L  R  *  L  E  V  S  L  E  S  T  M  E  K  L  S  I  K  L  R  S  S  L  R  *  L  V  T  T  *  L  S  S  P  S  H  T  S  L  S  S  T  V  G  P  V  L  V  L  L  T  L  Q  G  S  F  H  *  S  D  S  S  K  S  V  Y  M  V  S  S  N  T  S  T  F  V  L  L  Q  F  *  *  E  Q  W  I  L  N  G  S  L  F  E  T  S  N  L  L  I  H  C  N  I  S  M  I  V  L  L  F  R  F  L  Y  L  F  V  S  L  K  L  V  T  L  C  L  </second_frame>
            <third_frame>   F  I  V  V  P  K  T  L  A  A  V  T  S  I  G  A  *  K  P  I  H  S  R  S  H   : G  G  S  *  S  *  C  C  D  R  T  A  K  E  E  N  I  Q  E  V  Q  L  Q  R  S  R  S  G  F  S  S  *  H  V  Y  *  *  A  C  *  A  L  P  C  S  S  S  Q  K  :  V  P  E  G  F  E  E  E  A  Y  G  F  D  Q  E  A  A  Q  G   : E  T  *  G  P  T  W  *  E  A  R  G  C  E  N  T  F  E  E  H  D  H  C  S  *  D  D  W  K  C  H  W  N  L  Q  W  K  N  F  Q  S  N  *  G  Q  A  *  D  D  *  S  L  L  S  *  V  L  H  L  I  Q  A  C  Q  A  R  *  A  R  Y  W  C  Y  S  L  F  K  V  H  S  I  E  V  I  H  P  N  L  S  T  W  F  L  V  I  L  V  L  L  F  Y  C  N  F  D  E  N  S  G  Y  *  M  V  L  C  L  R  L  V  I  C  *  Y  I  A  T  F  Q  *  L  C  F  Y  L  D  F  C  T  F  L  F  L  *  N  W  L  L  C  V  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71296" stop="71264"/>
                    <exon start="71162" stop="71017"/>
                    <exon start="70524" stop="70467"/>
                    <exon start="69336" stop="69088"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELRSQFILEAMAEVEADVATGQPRKRTFKKFSYRGVDLDSLLDMSTDELVKLYPARPRRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEVVRTHLRNMIIVPEMIGSVIGIYNGKTFNQIEVKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71326" e_stop="71264"/>
            <exon e_start="71162" e_stop="71017"/>
            <exon e_start="70524" e_stop="68958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.984"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="71326" e_stop="71264" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71263" i_stop="71163" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71162" e_stop="71017" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71016" i_stop="70525" i_length="492"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70524" e_stop="68958" e_length="1567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71326" stop="71264"/>
              <exon start="71162" stop="71017"/>
              <exon start="70524" stop="68958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580459" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAAACCCTAGCCGCAGTCACTTCCATAGGAGCTTAGAAGCCAATTCATTCTCGAAGCCATG : GCGGAAGTTGAAGCTGATGTTGCGACCGGACAGCCAAGGAAGAGAACATTCAAGAAGTTCAGCTACAGAGGAGTAGATCTGGATTCTCTTCTTGACATGTCTACTGATGAGCTTGTTAAGCTTTACCCTGCTCGTCCTCGCAGAAG : GTTCCAGAGGGGTTTGAAGAGGAAGCCTATGGCTTTGATCAAGAAGCTGCGCAAGGCGGTAAGATTACTAACCTCCTTTTAGCTTCTCTTTTAAAAATAAATGGTTTATTTGGTGTTAAATATCAGCCATTTTATGGTAGAGAAACTTGAAATAGATATGTTAGGGGTTGTGGAATGATTACATGTCTTTGCTTTTTGTAGCCTCAGTTATATCCAGCACACCTTGCATTTGTCTATTAATTTAGTGAGAACTCTATTAGTGTAACTGCAATGCTATAGTGAATTTAGATCATGAGTCAAAAGACTGCTGCGATGTGAAGCTGCATTTTTAGTACATCTGAATGCTTTTTCTCGAAGTTAGTGAATGCAACCATTTACTGAGCATGGACAATCTAGTTTACCTGTATCTTTGTTGATTATCCATGATCACCTATTGTTCTTTCTAGTTGCAGAATTGTATATTATTTCAACCCCCAGATTTTTGCATGTTCGACAAAGTCATATTAGGTGAAGCTGAAATTCGTTTGATATACAAAAAGAAACAATATAAGTATAATGAATCTTTTAGATGTGTTTCTGGGTTCTTAGTCTTAAACGACTTAGAGATGTTTAGAATTAGGCGCCTAAGGCCGAGCGCTTCCCTCGTTAATTAAGAGGTGGCGTGGTATTCCACAGAGTGAGGTTTTTATTTGTGGCGCACTAAGTGCGTAGGCGCACAATAATGTTTTGGGGTCTCCATGGCTGCTTTGGGTGCATCAACCTGCTTCCAAGGTGTCGGGATTGCCCTATATTTTCAATCTCCCAGTCGCTTTGTCTTTCTTCTGCCACTAGAATTTCTACTTGTTTTGTTACATTCTTTTGCTGGATTTATGTGGCAGTATTGTTTCTTTTCTTGTACATAATAGTCTATGTGAACTAGTTTATTGTGATGGTGAAATTTTACTACTATAGTTTTTTGGGAAGGAGGAAAGGCCTTCTGATGTTCAAATCATATAATCAGAATGCCACTTTCCTCATGCAACTACCTCTCCCTACAGAAATAAACAGGATTTAATGCTTGCACCCAGTGTTTCATGGTTTGCAAGTTTGGCTTCGCTGTAACATCGTAAACATCATTATATGTTTTATATTATTACCAATTTTTTGTATATGTATGTCTTTCCATTGATGTTTTTCATATTCAAACAGAAACGTGAGGCCCCACCTGGTGAGAAGCCAGAGGTTGTGAGAACACATTTGAGGAACATGATCATTGTTCCTGAGATGATTGGAAGTGTCATTGGAATCTACAATGGAAAAACTTTCAATCAAATTGAGGTCAAGCCTGAGATGATTAGTCACTACTTAGCTGAGTTCTCCATCTCATACAAGCCTGTCAAGCACGGTAGGCCCGGTATTGGTGCTACTCACTCTTCAAGGTTCATTCCATTGAAGTGATTCATCCAAATCTGTCTACATGGTTTCTAGTAATACTAGTACTTTTGTTTTACTGCAATTTTGATGAGAACAGTGGATACTGAATGGTTCTTTGTTTGAGACTAGTAATTTGCTGATACATTGCAACATT</gDNA_template>
            <first_frame> P  K  P  *  P  Q  S  L  P  *  E  L  R  S  Q  F  I  L  E  A  M  :  A  E  V  E  A  D  V  A  T  G  Q  P  R  K  R  T  F  K  K  F  S  Y  R  G  V  D  L  D  S  L  L  D  M  S  T  D  E  L  V  K  L  Y  P  A  R  P  R  R  R :   F  Q  R  G  L  K  R  K  P  M  A  L  I  K  K  L  R  K  A  V  R  L  L  T  S  F  *  L  L  F  *  K  *  M  V  Y  L  V  L  N  I  S  H  F  M  V  E  K  L  E  I  D  M  L  G  V  V  E  *  L  H  V  F  A  F  C  S  L  S  Y  I  Q  H  T  L  H  L  S  I  N  L  V  R  T  L  L  V  *  L  Q  C  Y  S  E  F  R  S  *  V  K  R  L  L  R  C  E  A  A  F  L  V  H  L  N  A  F  S  R  S  *  *  M  Q  P  F  T  E  H  G  Q  S  S  L  P  V  S  L  L  I  I  H  D  H  L  L  F  F  L  V  A  E  L  Y  I  I  S  T  P  R  F  L  H  V  R  Q  S  H  I  R  *  S  *  N  S  F  D  I  Q  K  E  T  I  *  V  *  *  I  F  *  M  C  F  W  V  L  S  L  K  R  L  R  D  V  *  N  *  A  P  K  A  E  R  F  P  R  *  L  R  G  G  V  V  F  H  R  V  R  F  L  F  V  A  H  *  V  R  R  R  T  I  M  F  W  G  L  H  G  C  F  G  C  I  N  L  L  P  R  C  R  D  C  P  I  F  S  I  S  Q  S  L  C  L  S  S  A  T  R  I  S  T  C  F  V  T  F  F  C  W  I  Y  V  A  V  L  F  L  F  L  Y  I  I  V  Y  V  N  *  F  I  V  M  V  K  F  Y  Y  Y  S  F  L  G  R  R  K  G  L  L  M  F  K  S  Y  N  Q  N  A  T  F  L  M  Q  L  P  L  P  T  E  I  N  R  I  *  C  L  H  P  V  F  H  G  L  Q  V  W  L  R  C  N  I  V  N  I  I  I  C  F  I  L  L  P  I  F  C  I  C  M  S  F  H  *  C  F  S  Y  S  N  R  N  V  R  P  H  L  V  R  S  Q  R  L  *  E  H  I  *  G  T  *  S  L  F  L  R  *  L  E  V  S  L  E  S  T  M  E  K  L  S  I  K  L  R  S  S  L  R  *  L  V  T  T  *  L  S  S  P  S  H  T  S  L  S  S  T  V  G  P  V  L  V  L  L  T  L  Q  G  S  F  H  *  S  D  S  S  K  S  V  Y  M  V  S  S  N  T  S  T  F  V  L  L  Q  F  *  *  E  Q  W  I  L  N  G  S  L  F  E  T  S  N  L  L  I  H  C  N  I </first_frame>
            <second_frame>  Q  N  P  S  R  S  H  F  H  R  S  L  E  A  N  S  F  S  K  P  W :   R  K  L  K  L  M  L  R  P  D  S  Q  G  R  E  H  S  R  S  S  A  T  E  E  *  I  W  I  L  F  L  T  C  L  L  M  S  L  L  S  F  T  L  L  V  L  A  E   : G  S  R  G  V  *  R  G  S  L  W  L  *  S  R  S  C  A  R  R  *  D  Y  *  P  P  F  S  F  S  F  K  N  K  W  F  I  W  C  *  I  S  A  I  L  W  *  R  N  L  K  *  I  C  *  G  L  W  N  D  Y  M  S  L  L  F  V  A  S  V  I  S  S  T  P  C  I  C  L  L  I  *  *  E  L  Y  *  C  N  C  N  A  I  V  N  L  D  H  E  S  K  D  C  C  D  V  K  L  H  F  *  Y  I  *  M  L  F  L  E  V  S  E  C  N  H  L  L  S  M  D  N  L  V  Y  L  Y  L  C  *  L  S  M  I  T  Y  C  S  F  *  L  Q  N  C  I  L  F  Q  P  P  D  F  C  M  F  D  K  V  I  L  G  E  A  E  I  R  L  I  Y  K  K  K  Q  Y  K  Y  N  E  S  F  R  C  V  S  G  F  L  V  L  N  D  L  E  M  F  R  I  R  R  L  R  P  S  A  S  L  V  N  *  E  V  A  W  Y  S  T  E  *  G  F  Y  L  W  R  T  K  C  V  G  A  Q  *  C  F  G  V  S  M  A  A  L  G  A  S  T  C  F  Q  G  V  G  I  A  L  Y  F  Q  S  P  S  R  F  V  F  L  L  P  L  E  F  L  L  V  L  L  H  S  F  A  G  F  M  W  Q  Y  C  F  F  S  C  T  *  *  S  M  *  T  S  L  L  *  W  *  N  F  T  T  I  V  F  W  E  G  G  K  A  F  *  C  S  N  H  I  I  R  M  P  L  S  S  C  N  Y  L  S  L  Q  K  *  T  G  F  N  A  C  T  Q  C  F  M  V  C  K  F  G  F  A  V  T  S  *  T  S  L  Y  V  L  Y  Y  Y  Q  F  F  V  Y  V  C  L  S  I  D  V  F  H  I  Q  T  E  T  *  G  P  T  W  *  E  A  R  G  C  E  N  T  F  E  E  H  D  H  C  S  *  D  D  W  K  C  H  W  N  L  Q  W  K  N  F  Q  S  N  *  G  Q  A  *  D  D  *  S  L  L  S  *  V  L  H  L  I  Q  A  C  Q  A  R  *  A  R  Y  W  C  Y  S  L  F  K  V  H  S  I  E  V  I  H  P  N  L  S  T  W  F  L  V  I  L  V  L  L  F  Y  C  N  F  D  E  N  S  G  Y  *  M  V  L  C  L  R  L  V  I  C  *  Y  I  A  T   </second_frame>
            <third_frame>   K  T  L  A  A  V  T  S  I  G  A  *  K  P  I  H  S  R  S  H   : G  G  S  *  S  *  C  C  D  R  T  A  K  E  E  N  I  Q  E  V  Q  L  Q  R  S  R  S  G  F  S  S  *  H  V  Y  *  *  A  C  *  A  L  P  C  S  S  S  Q  K  :  V  P  E  G  F  E  E  E  A  Y  G  F  D  Q  E  A  A  Q  G  G  K  I  T  N  L  L  L  A  S  L  L  K  I  N  G  L  F  G  V  K  Y  Q  P  F  Y  G  R  E  T  *  N  R  Y  V  R  G  C  G  M  I  T  C  L  C  F  L  *  P  Q  L  Y  P  A  H  L  A  F  V  Y  *  F  S  E  N  S  I  S  V  T  A  M  L  *  *  I  *  I  M  S  Q  K  T  A  A  M  *  S  C  I  F  S  T  S  E  C  F  F  S  K  L  V  N  A  T  I  Y  *  A  W  T  I  *  F  T  C  I  F  V  D  Y  P  *  S  P  I  V  L  S  S  C  R  I  V  Y  Y  F  N  P  Q  I  F  A  C  S  T  K  S  Y  *  V  K  L  K  F  V  *  Y  T  K  R  N  N  I  S  I  M  N  L  L  D  V  F  L  G  S  *  S  *  T  T  *  R  C  L  E  L  G  A  *  G  R  A  L  P  S  L  I  K  R  W  R  G  I  P  Q  S  E  V  F  I  C  G  A  L  S  A  *  A  H  N  N  V  L  G  S  P  W  L  L  W  V  H  Q  P  A  S  K  V  S  G  L  P  Y  I  F  N  L  P  V  A  L  S  F  F  C  H  *  N  F  Y  L  F  C  Y  I  L  L  L  D  L  C  G  S  I  V  S  F  L  V  H  N  S  L  C  E  L  V  Y  C  D  G  E  I  L  L  L  *  F  F  G  K  E  E  R  P  S  D  V  Q  I  I  *  S  E  C  H  F  P  H  A  T  T  S  P  Y  R  N  K  Q  D  L  M  L  A  P  S  V  S  W  F  A  S  L  A  S  L  *  H  R  K  H  H  Y  M  F  Y  I  I  T  N  F  L  Y  M  Y  V  F  P  L  M  F  F  I  F  K  Q  K  R  E  A  P  P  G  E  K  P  E  V  V  R  T  H  L  R  N  M  I  I  V  P  E  M  I  G  S  V  I  G  I  Y  N  G  K  T  F  N  Q  I  E  V  K  P  E  M  I  S  H  Y  L  A  E  F  S  I  S  Y  K  P  V  K  H  G  R  P  G  I  G  A  T  H  S  S  R  F  I  P  L  K  *  F  I  Q  I  C  L  H  G  F  *  *  Y  *  Y  F  C  F  T  A  I  L  M  R  T  V  D  T  E  W  F  F  V  *  D  *  *  F  A  D  T  L  Q  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69423" stop="69088"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRKHHYMFYIITNFLYMYVFPLMFFIFKQKREAPPGEKPEVVRTHLRNMIIVPEMIGSVIGIYNGKTFNQIEVKPEMISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71296" stop="71264"/>
                    <exon start="71162" stop="71017"/>
                    <exon start="70524" stop="70443"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELRSQFILEAMAEVEADVATGQPRKRTFKKFSYRGVDLDSLLDMSTDELVKLYPARPRRRFQRGLKRKPMALIKKLRKAVRLLTSF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69821" stop="69606"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRRRTIMFWGLHGCFGCINLLPRCRDCPIFSISQSLCLSSATRISTCFVTFFCWIYVAVLFLFLYIIVYVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70078" stop="69872"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQNCILFQPPDFCMFDKVILGEAEIRLIYKKKQYKYNESFRCVSGFLVLNDLEMFRIRRLRPSASLVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="68992" PGL_stop="69172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68992" e_stop="69172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="68992" e_stop="69172" e_length="181"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68992" stop="69172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAAAGAACCATTCAGTATCCACTGTTCTCATCAAAATTGCAGTAAAACAAAAGTACTAGTATTACTAGAAACCATGTAGACAGATTTGGATGAATCACTTCAATGGAATGAACCTTGAAGAGTGAGTAGCACCAATACCGGGCCTACCGTGCTTGACAGGCTTGTATGAGATGGAGAAC</gDNA_template>
            <first_frame> N  K  E  P  F  S  I  H  C  S  H  Q  N  C  S  K  T  K  V  L  V  L  L  E  T  M  *  T  D  L  D  E  S  L  Q  W  N  E  P  *  R  V  S  S  T  N  T  G  P  T  V  L  D  R  L  V  *  D  G  E  </first_frame>
            <second_frame>  T  K  N  H  S  V  S  T  V  L  I  K  I  A  V  K  Q  K  Y  *  Y  Y  *  K  P  C  R  Q  I  W  M  N  H  F  N  G  M  N  L  E  E  *  V  A  P  I  P  G  L  P  C  L  T  G  L  Y  E  M  E  N </second_frame>
            <third_frame>   Q  R  T  I  Q  Y  P  L  F  S  S  K  L  Q  *  N  K  S  T  S  I  T  R  N  H  V  D  R  F  G  *  I  T  S  M  E  *  T  L  K  S  E  *  H  Q  Y  R  A  Y  R  A  *  Q  A  C  M  R  W  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0020N15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="73063" PGL_stop="78033"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73063" e_stop="73104"/>
            <exon e_start="76591" e_stop="78033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.913" e_score="0.976"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="73063" e_stop="73104" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.913">
            <gDNA_intron_boundary i_start="73105" i_stop="76590" i_length="3486"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76591" e_stop="78033" e_length="1443"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73063" stop="73104"/>
              <exon start="76591" stop="78033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586140" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACTGCTTCGCCATTTTCACTGGAGCTGTTCCTATTGTTAG : GCTTATAATTTGTGTCCCTTGAGGCATGATCTTGGCATTGACACATCTCTTTCGTAGGGCTCCCTTTTTTTAAAATGCTTCAATCTCTCTATAAATGTCAAAGAAACTTGTGTACAAAGATCAGGACAACCAGCCTTCTCGTGCAGTTTGTGTCAACTAGCTGTGGCAGCAACATCCCAACTGATGAGAGCACACTCGTTGATTTGTATCACAGAAAGACACATGGTTTATCAAAAGAAAACGTCATTAGTGAAGCAGAACCACTCCAATTAGATACTGCTCAATGTTCAAAAGTTTCAGCTTTTGTTGAGTTCTTCCAAAACCATGGGTTTTCTGCAACCCAAACGAAGAGACTAATTAGACTACGCCCTAAATTACTAGTATCGAAGGTGGACAAAACCCTAAAGCCCAAGTTGAAGTTCTTGCAATCAATTGGCTTTACTGAAGATGAACGCAATAAGATTATCTGTGGTAACCCCAACATACTCATGAGTAGCGTAGAGAAACAACTGACTCCATGCTTTGATTCCCTAAAGATGTTCATGGGTAGTGAAATGCAAGCAATGGCTGCCATCAAACGAAGTCCGCAGATCTTTAATTATAAATTCTCTGATGGTTTGGAGCAGACTCTACAGGTATTGCACCAACTTGGTATTCCTGATTCTGAAGCTTCAGAGTTTATTTCAAAAGTTCCCATTATCTTGACTATAAATCCCAAAAAGATGAGTAAGGTTGGCTTGAGACTTAAGGAATTGGGGTTTGATGTTACTTCTTCAGCATTTAGGGCAGCTTTTACCGCAATGTCTGTACTTAGTGATTCCAAAATGGAAAAGAAACTGGAAAACTACCGAAGTATGGGCTTTTCAGATGGCGAGATCCGCAATATATTCAGATTGCAGCCAACTTGCATGTTTTATTCTGAGGATAATATCAGGGCAATTGTGGCATTCTATGTTAATAAACTCCATTTGAGCCTATCACACTTGTCACAAAGACCATCCTTTCTATTGCGTAGCCTGAAGAAGAGGGTTATTCCCAGGTGTTCTGTCATGCAAGTTTTGTGGTCAACAGGCGTTATTTCAAAAGTTAACAAACTATCCTCAATTCTAATGATTAGTGAAAAGGACTTCTTACGGAAGTGTGTTACTAAATATGAAGCACAAGTTCCTCAACTGCTAGCTGCCTACCGTGGTGAACTTGTGTTCAACGAATACACTTTTCATTTACGTGAAATTCATCAGATTTCAGTGTCAAAGGCATCATCTTCTAAAGCTACGTAGCTTAGTAGTATTTGCACCATCTGTATCTTTCACTGCACCATTTACTGTCGCATTCATGTTATCAACATTGTTTCCCATATTTAAGTTGAACTACTGCCGTTCTGTTCGTAGAGGTACTAGAATTCTTTACTGGTAAGCTTATGAAGGAAATAAATTTTCTGAT</gDNA_template>
            <first_frame> S  L  L  R  H  F  H  W  S  C  S  Y  C  *  :  A  Y  N  L  C  P  L  R  H  D  L  G  I  D  T  S  L  S  *  G  S  L  F  L  K  C  F  N  L  S  I  N  V  K  E  T  C  V  Q  R  S  G  Q  P  A  F  S  C  S  L  C  Q  L  A  V  A  A  T  S  Q  L  M  R  A  H  S  L  I  C  I  T  E  R  H  M  V  Y  Q  K  K  T  S  L  V  K  Q  N  H  S  N  *  I  L  L  N  V  Q  K  F  Q  L  L  L  S  S  S  K  T  M  G  F  L  Q  P  K  R  R  D  *  L  D  Y  A  L  N  Y  *  Y  R  R  W  T  K  P  *  S  P  S  *  S  S  C  N  Q  L  A  L  L  K  M  N  A  I  R  L  S  V  V  T  P  T  Y  S  *  V  A  *  R  N  N  *  L  H  A  L  I  P  *  R  C  S  W  V  V  K  C  K  Q  W  L  P  S  N  E  V  R  R  S  L  I  I  N  S  L  M  V  W  S  R  L  Y  R  Y  C  T  N  L  V  F  L  I  L  K  L  Q  S  L  F  Q  K  F  P  L  S  *  L  *  I  P  K  R  *  V  R  L  A  *  D  L  R  N  W  G  L  M  L  L  L  Q  H  L  G  Q  L  L  P  Q  C  L  Y  L  V  I  P  K  W  K  R  N  W  K  T  T  E  V  W  A  F  Q  M  A  R  S  A  I  Y  S  D  C  S  Q  L  A  C  F  I  L  R  I  I  S  G  Q  L  W  H  S  M  L  I  N  S  I  *  A  Y  H  T  C  H  K  D  H  P  F  Y  C  V  A  *  R  R  G  L  F  P  G  V  L  S  C  K  F  C  G  Q  Q  A  L  F  Q  K  L  T  N  Y  P  Q  F  *  *  L  V  K  R  T  S  Y  G  S  V  L  L  N  M  K  H  K  F  L  N  C  *  L  P  T  V  V  N  L  C  S  T  N  T  L  F  I  Y  V  K  F  I  R  F  Q  C  Q  R  H  H  L  L  K  L  R  S  L  V  V  F  A  P  S  V  S  F  T  A  P  F  T  V  A  F  M  L  S  T  L  F  P  I  F  K  L  N  Y  C  R  S  V  R  R  G  T  R  I  L  Y  W  *  A  Y  E  G  N  K  F  S  D </first_frame>
            <second_frame>  H  C  F  A  I  F  T  G  A  V  P  I  V  R :   L  I  I  C  V  P  *  G  M  I  L  A  L  T  H  L  F  R  R  A  P  F  F  *  N  A  S  I  S  L  *  M  S  K  K  L  V  Y  K  D  Q  D  N  Q  P  S  R  A  V  C  V  N  *  L  W  Q  Q  H  P  N  *  *  E  H  T  R  *  F  V  S  Q  K  D  T  W  F  I  K  R  K  R  H  *  *  S  R  T  T  P  I  R  Y  C  S  M  F  K  S  F  S  F  C  *  V  L  P  K  P  W  V  F  C  N  P  N  E  E  T  N  *  T  T  P  *  I  T  S  I  E  G  G  Q  N  P  K  A  Q  V  E  V  L  A  I  N  W  L  Y  *  R  *  T  Q  *  D  Y  L  W  *  P  Q  H  T  H  E  *  R  R  E  T  T  D  S  M  L  *  F  P  K  D  V  H  G  *  *  N  A  S  N  G  C  H  Q  T  K  S  A  D  L  *  L  *  I  L  *  W  F  G  A  D  S  T  G  I  A  P  T  W  Y  S  *  F  *  S  F  R  V  Y  F  K  S  S  H  Y  L  D  Y  K  S  Q  K  D  E  *  G  W  L  E  T  *  G  I  G  V  *  C  Y  F  F  S  I  *  G  S  F  Y  R  N  V  C  T  *  *  F  Q  N  G  K  E  T  G  K  L  P  K  Y  G  L  F  R  W  R  D  P  Q  Y  I  Q  I  A  A  N  L  H  V  L  F  *  G  *  Y  Q  G  N  C  G  I  L  C  *  *  T  P  F  E  P  I  T  L  V  T  K  T  I  L  S  I  A  *  P  E  E  E  G  Y  S  Q  V  F  C  H  A  S  F  V  V  N  R  R  Y  F  K  S  *  Q  T  I  L  N  S  N  D  *  *  K  G  L  L  T  E  V  C  Y  *  I  *  S  T  S  S  S  T  A  S  C  L  P  W  *  T  C  V  Q  R  I  H  F  S  F  T  *  N  S  S  D  F  S  V  K  G  I  I  F  *  S  Y  V  A  *  *  Y  L  H  H  L  Y  L  S  L  H  H  L  L  S  H  S  C  Y  Q  H  C  F  P  Y  L  S  *  T  T  A  V  L  F  V  E  V  L  E  F  F  T  G  K  L  M  K  E  I  N  F  L   </second_frame>
            <third_frame>   T  A  S  P  F  S  L  E  L  F  L  L  L   : G  L  *  F  V  S  L  E  A  *  S  W  H  *  H  I  S  F  V  G  L  P  F  F  K  M  L  Q  S  L  Y  K  C  Q  R  N  L  C  T  K  I  R  T  T  S  L  L  V  Q  F  V  S  T  S  C  G  S  N  I  P  T  D  E  S  T  L  V  D  L  Y  H  R  K  T  H  G  L  S  K  E  N  V  I  S  E  A  E  P  L  Q  L  D  T  A  Q  C  S  K  V  S  A  F  V  E  F  F  Q  N  H  G  F  S  A  T  Q  T  K  R  L  I  R  L  R  P  K  L  L  V  S  K  V  D  K  T  L  K  P  K  L  K  F  L  Q  S  I  G  F  T  E  D  E  R  N  K  I  I  C  G  N  P  N  I  L  M  S  S  V  E  K  Q  L  T  P  C  F  D  S  L  K  M  F  M  G  S  E  M  Q  A  M  A  A  I  K  R  S  P  Q  I  F  N  Y  K  F  S  D  G  L  E  Q  T  L  Q  V  L  H  Q  L  G  I  P  D  S  E  A  S  E  F  I  S  K  V  P  I  I  L  T  I  N  P  K  K  M  S  K  V  G  L  R  L  K  E  L  G  F  D  V  T  S  S  A  F  R  A  A  F  T  A  M  S  V  L  S  D  S  K  M  E  K  K  L  E  N  Y  R  S  M  G  F  S  D  G  E  I  R  N  I  F  R  L  Q  P  T  C  M  F  Y  S  E  D  N  I  R  A  I  V  A  F  Y  V  N  K  L  H  L  S  L  S  H  L  S  Q  R  P  S  F  L  L  R  S  L  K  K  R  V  I  P  R  C  S  V  M  Q  V  L  W  S  T  G  V  I  S  K  V  N  K  L  S  S  I  L  M  I  S  E  K  D  F  L  R  K  C  V  T  K  Y  E  A  Q  V  P  Q  L  L  A  A  Y  R  G  E  L  V  F  N  E  Y  T  F  H  L  R  E  I  H  Q  I  S  V  S  K  A  S  S  S  K  A  T  *  L  S  S  I  C  T  I  C  I  F  H  C  T  I  Y  C  R  I  H  V  I  N  I  V  S  H  I  *  V  E  L  L  P  F  C  S  *  R  Y  *  N  S  L  L  V  S  L  *  R  K  *  I  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76632" stop="77870"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1236</number_coding_nucleotides>
                  <number_encoded_amino_acids>412</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HISFVGLPFFKMLQSLYKCQRNLCTKIRTTSLLVQFVSTSCGSNIPTDESTLVDLYHRKTHGLSKENVISEAEPLQLDTAQCSKVSAFVEFFQNHGFSATQTKRLIRLRPKLLVSKVDKTLKPKLKFLQSIGFTEDERNKIICGNPNILMSSVEKQLTPCFDSLKMFMGSEMQAMAAIKRSPQIFNYKFSDGLEQTLQVLHQLGIPDSEASEFISKVPIILTINPKKMSKVGLRLKELGFDVTSSAFRAAFTAMSVLSDSKMEKKLENYRSMGFSDGEIRNIFRLQPTCMFYSEDNIRAIVAFYVNKLHLSLSHLSQRPSFLLRSLKKRVIPRCSVMQVLWSTGVISKVNKLSSILMISEKDFLRKCVTKYEAQVPQLLAAYRGELVFNEYTFHLREIHQISVSKASSSKAT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="80592" PGL_stop="78717"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80592" e_stop="80360"/>
            <exon e_start="79172" e_stop="78717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80592" e_stop="80360" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="80359" i_stop="79173" i_length="1187"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="79172" e_stop="78717" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80592" stop="80360"/>
              <exon start="79172" stop="78717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACAGAGATACCTACAAATGGCGAAATCAATGAGATCAAAGAGGGAAAAGAGGCTGAGAGCTATAAGGAGGGATATAGTTGCTACAGAACCATCTGTTCTTAAGAAAGAAGCTGCTAAATTGGCTGCCCAAGAAGCTGCCCTTGCTGCTCCTAAGCTTATTGTTAAGTCTCCCTTCAGCCGCACCACCATGGATACTTCTGCCTCTACTTCTAACGACGAATCTAAAATGG : ATGTGGAGATGGCTGATGGCAATCAAAGTTCAAAATCTCTAAAACCTCTTGGAAAGAAGATGAAAAAGAAGCTTAAAATAGCTAAGAAGAAGAATCATGGCAAGGGAAAGATCAGGAGGAAGAATGTTTGACTGCAGGCGGTAGCCATCTTGCTAAGCTGATAGATGTCTTGTTACTTACTGTTGACAAGTCCCTCCCATATTCTCTCCTTGATTCATGATCTTACATTGTAGTAGAGTATCTTGGAACTTGAGCATGTGAGTGGGTATGCTCATATAGATTGTGTTCATGGGCTGTCAAAATGAAGCCTCAAGTTCTTAAATTTGTTTACAAAATAGATGGCGTTTTTCATTTTCCTTTTACAGTTTGTTGGAACATGCTAAACTTGAAAGGAAATATGAACATGTAGACTGTAATCCAACAATGTTAAAGATGTTTTAGTTTTCTGATTAGGAG</gDNA_template>
            <first_frame> K  T  E  I  P  T  N  G  E  I  N  E  I  K  E  G  K  E  A  E  S  Y  K  E  G  Y  S  C  Y  R  T  I  C  S  *  E  R  S  C  *  I  G  C  P  R  S  C  P  C  C  S  *  A  Y  C  *  V  S  L  Q  P  H  H  H  G  Y  F  C  L  Y  F  *  R  R  I  *  N  G :   C  G  D  G  *  W  Q  S  K  F  K  I  S  K  T  S  W  K  E  D  E  K  E  A  *  N  S  *  E  E  E  S  W  Q  G  K  D  Q  E  E  E  C  L  T  A  G  G  S  H  L  A  K  L  I  D  V  L  L  L  T  V  D  K  S  L  P  Y  S  L  L  D  S  *  S  Y  I  V  V  E  Y  L  G  T  *  A  C  E  W  V  C  S  Y  R  L  C  S  W  A  V  K  M  K  P  Q  V  L  K  F  V  Y  K  I  D  G  V  F  H  F  P  F  T  V  C  W  N  M  L  N  L  K  G  N  M  N  M  *  T  V  I  Q  Q  C  *  R  C  F  S  F  L  I  R   </first_frame>
            <second_frame>  K  Q  R  Y  L  Q  M  A  K  S  M  R  S  K  R  E  K  R  L  R  A  I  R  R  D  I  V  A  T  E  P  S  V  L  K  K  E  A  A  K  L  A  A  Q  E  A  A  L  A  A  P  K  L  I  V  K  S  P  F  S  R  T  T  M  D  T  S  A  S  T  S  N  D  E  S  K  M   : D  V  E  M  A  D  G  N  Q  S  S  K  S  L  K  P  L  G  K  K  M  K  K  K  L  K  I  A  K  K  K  N  H  G  K  G  K  I  R  R  K  N  V  *  L  Q  A  V  A  I  L  L  S  *  *  M  S  C  Y  L  L  L  T  S  P  S  H  I  L  S  L  I  H  D  L  T  L  *  *  S  I  L  E  L  E  H  V  S  G  Y  A  H  I  D  C  V  H  G  L  S  K  *  S  L  K  F  L  N  L  F  T  K  *  M  A  F  F  I  F  L  L  Q  F  V  G  T  C  *  T  *  K  E  I  *  T  C  R  L  *  S  N  N  V  K  D  V  L  V  F  *  L  G  </second_frame>
            <third_frame>   N  R  D  T  Y  K  W  R  N  Q  *  D  Q  R  G  K  R  G  *  E  L  *  G  G  I  *  L  L  Q  N  H  L  F  L  R  K  K  L  L  N  W  L  P  K  K  L  P  L  L  L  L  S  L  L  L  S  L  P  S  A  A  P  P  W  I  L  L  P  L  L  L  T  T  N  L  K  W  :  M  W  R  W  L  M  A  I  K  V  Q  N  L  *  N  L  L  E  R  R  *  K  R  S  L  K  *  L  R  R  R  I  M  A  R  E  R  S  G  G  R  M  F  D  C  R  R  *  P  S  C  *  A  D  R  C  L  V  T  Y  C  *  Q  V  P  P  I  F  S  P  *  F  M  I  L  H  C  S  R  V  S  W  N  L  S  M  *  V  G  M  L  I  *  I  V  F  M  G  C  Q  N  E  A  S  S  S  *  I  C  L  Q  N  R  W  R  F  S  F  S  F  Y  S  L  L  E  H  A  K  L  E  R  K  Y  E  H  V  D  C  N  P  T  M  L  K  M  F  *  F  S  D  *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80591" stop="80360"/>
                    <exon start="79172" stop="79042"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQRYLQMAKSMRSKREKRLRAIRRDIVATEPSVLKKEAAKLAAQEAALAAPKLIVKSPFSRTTMDTSASTSNDESKMDVEMADGNQSSKSLKPLGKKMKKKLKIAKKKNHGKGKIRRKNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="82254" PGL_stop="86007"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82254" e_stop="82989"/>
            <exon e_start="83116" e_stop="83445"/>
            <exon e_start="84797" e_stop="84912"/>
            <exon e_start="85466" e_stop="85556"/>
            <exon e_start="85639" e_stop="86007"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.236" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82254" e_stop="82989" e_length="736"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="82990" i_stop="83115" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="83116" e_stop="83445" e_length="330"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="83446" i_stop="84796" i_length="1351"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84797" e_stop="84912" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.940" acc_prob="0.949">
            <gDNA_intron_boundary i_start="84913" i_stop="85465" i_length="553"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="85466" e_stop="85556" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.236" acc_prob="0.993">
            <gDNA_intron_boundary i_start="85557" i_stop="85638" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="85639" e_stop="86007" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82254" stop="82989"/>
              <exon start="83116" stop="83445"/>
              <exon start="84797" stop="84912"/>
              <exon start="85466" stop="85556"/>
              <exon start="85639" stop="86007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U563046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCTCCTCTCAGTGATGAGAGTTCAACAGATTCAGTCAGTGGTTGATCTGCGCTAGGGTTGCTTCCAGCTTGAACCTTCCTATATGCTTCCATTTTGTTGATCTTCAATCTCGATTTTCAATTTCTCCAGCTCAATTTTTATCTATAGAACAAGAAAAAGTGTATAATTTTGGAAAGACAAGAAAAGAAAACTAGATGATGTCTGGAAATGCTTTAGTCCATGTATCAACAAATTCTACTGTTTTCCCCATCATACCCAGTAGAAGAAATGTGTTGGGTGATCGTTTTCTGTGTATAAAATCACCAATCAGGCCTAAAAATCGAACCTTTAGTGTGAAAGCAATGTCTGCAAATACGGGTCATAGTCAAGAACAAGAGCAACAACCCGAGTCATCTTCCGACCAGAAAGGTCCACTTTCTGTTATTTTAGATGTTCCCAGGAATATTTGGAAGCGAACTATGCGTCCATTGAGTGATTTTGGGTTTGGTAAAAGGAGCATCTGGGAAGGTGGGGTTGGGTTGTTTATCGTTTCGGGTACTGTGTTGTTGGCACTCAGCTTAGCTTGGTTGAGAGGGTTTCAGCTGCGGTCTAGGTTTAGGAAGTATTTAGCTGTGCTTGAGTTTGAGCAGGCTTGTGGCATCTGCACTGGCACACCTGTTAGAATCAGAGGAGTAAGTATTGGTAATGTGATTCGAGTCAATCCTTCCTTGAGAAATGTTGAAGCTGTTGTTGAG : GTTGAAGATGATAAGATCATTATTCCTCGAAACTCGTTAGTTGAGGTGAACCAGTCTGGTCTTATCATGGAAACCATGATTGATATCACACCTCGAGATCCAATCCCAATACCTTCTGCAGGGCCCCTGGATCCGGATTGTGTTAAGGAGGGTCTGATAATTTGCGACAGGCAAAAGATTAAAGGACAACAAGGGGTTAGTCTAGATGCATTGGTTGGAATATTCACACGTCTTGGCCGTGAAGCAGAAGAAATTGGTTTGGCGAATACCTATGCTTTGGCTGAGAGAGCTCTAAATGTTATTGAGGAGGCGCGACCGCTGCTTACAAAG : ATTAAAGCCATGGCTGAGGATGTCCAACCTATGCTAGCTGATGTTCGTGATAGTGGCTTACTGAAGGAAGTTGAGAGTTTAACCCGAAGTCTGGCACTAACATCTGAAGATATAAG : GAGAGTGCACTCCACGGTCATGACTCCTGAGAACACCGAATTGATACGGAAGTCTATTTATACGCTGGTCTTCACTTTGAAGAATGTTGAG : AGCATTAGCTCCGACATTTTGGGATTCACTGGCGATGAAGCTACTAGGCGCAATTTGAAAATGCTTATCAAATCGCTAAGCAGGCTATTGTAAAGTTGATTAATGTCTTGCAATACTACTAGCCTGAGAGAGGTTCCAAAGAGGAGAGGTTGTTCTGTTTGGCATTGACAAGAGTCCTTGGGCTATGGATTATAGGTTTTCTGCTAATCCAAAAGGATTTCAAGGTGTGAAAGCTTCCCTCTTCACCTTTGTTCTGTGTTAGAAATTGCAATATAAATGTCATTAGAAGATGGTTTCACTAATATGAATTTTGATTGTTTGGTCACTTTCTCTTTTGAGTTTCCTAATATCAGCACCTCATGTTTTCAT</gDNA_template>
            <first_frame> A  L  L  S  V  M  R  V  Q  Q  I  Q  S  V  V  D  L  R  *  G  C  F  Q  L  E  P  S  Y  M  L  P  F  C  *  S  S  I  S  I  F  N  F  S  S  S  I  F  I  Y  R  T  R  K  S  V  *  F  W  K  D  K  K  R  K  L  D  D  V  W  K  C  F  S  P  C  I  N  K  F  Y  C  F  P  H  H  T  Q  *  K  K  C  V  G  *  S  F  S  V  Y  K  I  T  N  Q  A  *  K  S  N  L  *  C  E  S  N  V  C  K  Y  G  S  *  S  R  T  R  A  T  T  R  V  I  F  R  P  E  R  S  T  F  C  Y  F  R  C  S  Q  E  Y  L  E  A  N  Y  A  S  I  E  *  F  W  V  W  *  K  E  H  L  G  R  W  G  W  V  V  Y  R  F  G  Y  C  V  V  G  T  Q  L  S  L  V  E  R  V  S  A  A  V  *  V  *  E  V  F  S  C  A  *  V  *  A  G  L  W  H  L  H  W  H  T  C  *  N  Q  R  S  K  Y  W  *  C  D  S  S  Q  S  F  L  E  K  C  *  S  C  C  *   : G  *  R  *  *  D  H  Y  S  S  K  L  V  S  *  G  E  P  V  W  S  Y  H  G  N  H  D  *  Y  H  T  S  R  S  N  P  N  T  F  C  R  A  P  G  S  G  L  C  *  G  G  S  D  N  L  R  Q  A  K  D  *  R  T  T  R  G  *  S  R  C  I  G  W  N  I  H  T  S  W  P  *  S  R  R  N  W  F  G  E  Y  L  C  F  G  *  E  S  S  K  C  Y  *  G  G  A  T  A  A  Y  K   : D  *  S  H  G  *  G  C  P  T  Y  A  S  *  C  S  *  *  W  L  T  E  G  S  *  E  F  N  P  K  S  G  T  N  I  *  R  Y  K  :  E  S  A  L  H  G  H  D  S  *  E  H  R  I  D  T  E  V  Y  L  Y  A  G  L  H  F  E  E  C  *   : E  H  *  L  R  H  F  G  I  H  W  R  *  S  Y  *  A  Q  F  E  N  A  Y  Q  I  A  K  Q  A  I  V  K  L  I  N  V  L  Q  Y  Y  *  P  E  R  G  S  K  E  E  R  L  F  C  L  A  L  T  R  V  L  G  L  W  I  I  G  F  L  L  I  Q  K  D  F  K  V  *  K  L  P  S  S  P  L  F  C  V  R  N  C  N  I  N  V  I  R  R  W  F  H  *  Y  E  F  *  L  F  G  H  F  L  F  *  V  S  *  Y  Q  H  L  M  F  S  </first_frame>
            <second_frame>  L  S  S  Q  *  *  E  F  N  R  F  S  Q  W  L  I  C  A  R  V  A  S  S  L  N  L  P  I  C  F  H  F  V  D  L  Q  S  R  F  S  I  S  P  A  Q  F  L  S  I  E  Q  E  K  V  Y  N  F  G  K  T  R  K  E  N  *  M  M  S  G  N  A  L  V  H  V  S  T  N  S  T  V  F  P  I  I  P  S  R  R  N  V  L  G  D  R  F  L  C  I  K  S  P  I  R  P  K  N  R  T  F  S  V  K  A  M  S  A  N  T  G  H  S  Q  E  Q  E  Q  Q  P  E  S  S  S  D  Q  K  G  P  L  S  V  I  L  D  V  P  R  N  I  W  K  R  T  M  R  P  L  S  D  F  G  F  G  K  R  S  I  W  E  G  G  V  G  L  F  I  V  S  G  T  V  L  L  A  L  S  L  A  W  L  R  G  F  Q  L  R  S  R  F  R  K  Y  L  A  V  L  E  F  E  Q  A  C  G  I  C  T  G  T  P  V  R  I  R  G  V  S  I  G  N  V  I  R  V  N  P  S  L  R  N  V  E  A  V  V  E  :  V  E  D  D  K  I  I  I  P  R  N  S  L  V  E  V  N  Q  S  G  L  I  M  E  T  M  I  D  I  T  P  R  D  P  I  P  I  P  S  A  G  P  L  D  P  D  C  V  K  E  G  L  I  I  C  D  R  Q  K  I  K  G  Q  Q  G  V  S  L  D  A  L  V  G  I  F  T  R  L  G  R  E  A  E  E  I  G  L  A  N  T  Y  A  L  A  E  R  A  L  N  V  I  E  E  A  R  P  L  L  T  K  :  I  K  A  M  A  E  D  V  Q  P  M  L  A  D  V  R  D  S  G  L  L  K  E  V  E  S  L  T  R  S  L  A  L  T  S  E  D  I  R :   R  V  H  S  T  V  M  T  P  E  N  T  E  L  I  R  K  S  I  Y  T  L  V  F  T  L  K  N  V  E  :  S  I  S  S  D  I  L  G  F  T  G  D  E  A  T  R  R  N  L  K  M  L  I  K  S  L  S  R  L  L  *  S  *  L  M  S  C  N  T  T  S  L  R  E  V  P  K  R  R  G  C  S  V  W  H  *  Q  E  S  L  G  Y  G  L  *  V  F  C  *  S  K  R  I  S  R  C  E  S  F  P  L  H  L  C  S  V  L  E  I  A  I  *  M  S  L  E  D  G  F  T  N  M  N  F  D  C  L  V  T  F  S  F  E  F  P  N  I  S  T  S  C  F  H </second_frame>
            <third_frame>   S  P  L  S  D  E  S  S  T  D  S  V  S  G  *  S  A  L  G  L  L  P  A  *  T  F  L  Y  A  S  I  L  L  I  F  N  L  D  F  Q  F  L  Q  L  N  F  Y  L  *  N  K  K  K  C  I  I  L  E  R  Q  E  K  K  T  R  *  C  L  E  M  L  *  S  M  Y  Q  Q  I  L  L  F  S  P  S  Y  P  V  E  E  M  C  W  V  I  V  F  C  V  *  N  H  Q  S  G  L  K  I  E  P  L  V  *  K  Q  C  L  Q  I  R  V  I  V  K  N  K  S  N  N  P  S  H  L  P  T  R  K  V  H  F  L  L  F  *  M  F  P  G  I  F  G  S  E  L  C  V  H  *  V  I  L  G  L  V  K  G  A  S  G  K  V  G  L  G  C  L  S  F  R  V  L  C  C  W  H  S  A  *  L  G  *  E  G  F  S  C  G  L  G  L  G  S  I  *  L  C  L  S  L  S  R  L  V  A  S  A  L  A  H  L  L  E  S  E  E  *  V  L  V  M  *  F  E  S  I  L  P  *  E  M  L  K  L  L  L  R :   L  K  M  I  R  S  L  F  L  E  T  R  *  L  R  *  T  S  L  V  L  S  W  K  P  *  L  I  S  H  L  E  I  Q  S  Q  Y  L  L  Q  G  P  W  I  R  I  V  L  R  R  V  *  *  F  A  T  G  K  R  L  K  D  N  K  G  L  V  *  M  H  W  L  E  Y  S  H  V  L  A  V  K  Q  K  K  L  V  W  R  I  P  M  L  W  L  R  E  L  *  M  L  L  R  R  R  D  R  C  L  Q  R :   L  K  P  W  L  R  M  S  N  L  C  *  L  M  F  V  I  V  A  Y  *  R  K  L  R  V  *  P  E  V  W  H  *  H  L  K  I  *   : G  E  C  T  P  R  S  *  L  L  R  T  P  N  *  Y  G  S  L  F  I  R  W  S  S  L  *  R  M  L  R :   A  L  A  P  T  F  W  D  S  L  A  M  K  L  L  G  A  I  *  K  C  L  S  N  R  *  A  G  Y  C  K  V  D  *  C  L  A  I  L  L  A  *  E  R  F  Q  R  G  E  V  V  L  F  G  I  D  K  S  P  W  A  M  D  Y  R  F  S  A  N  P  K  G  F  Q  G  V  K  A  S  L  F  T  F  V  L  C  *  K  L  Q  Y  K  C  H  *  K  M  V  S  L  I  *  I  L  I  V  W  S  L  S  L  L  S  F  L  I  S  A  P  H  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0020N15.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82450" stop="82989"/>
                    <exon start="83116" stop="83445"/>
                    <exon start="84797" stop="84912"/>
                    <exon start="85466" stop="85556"/>
                    <exon start="85639" stop="85731"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1167</number_coding_nucleotides>
                  <number_encoded_amino_acids>389</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MMSGNALVHVSTNSTVFPIIPSRRNVLGDRFLCIKSPIRPKNRTFSVKAMSANTGHSQEQEQQPESSSDQKGPLSVILDVPRNIWKRTMRPLSDFGFGKRSIWEGGVGLFIVSGTVLLALSLAWLRGFQLRSRFRKYLAVLEFEQACGICTGTPVRIRGVSIGNVIRVNPSLRNVEAVVEVEDDKIIIPRNSLVEVNQSGLIMETMIDITPRDPIPIPSAGPLDPDCVKEGLIICDRQKIKGQQGVSLDALVGIFTRLGREAEEIGLANTYALAERALNVIEEARPLLTKIKAMAEDVQPMLADVRDSGLLKEVESLTRSLALTSEDIRRVHSTVMTPENTELIRKSIYTLVFTLKNVESISSDILGFTGDEATRRNLKMLIKSLSRLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 68 chains have been computed
$ 
$ memory statistics:
$ 31696 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 2264 bytes was the average size of a spliced alignment
$ 20176 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1681 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 72 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:25:34
-->
