<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:40:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG337-F" ref_strand="+" ref_description="TG337-F">
      <seq>tgttctctgctgtctctggactagaactttcaatggcaaagcatcatcaccaatgtgagtccatatcttttggcagatctgttgttccctaatggcccccttgcccatatcccttggtgaagaaaatgaagaatcataagtcatatctattatattttacagctttcttccatattattaaaagatgctcattcttgttatgtcaaaacagtacttattagatgatattctgatgctctagctaactgattaactgaaaagacctaggagtgtttatgacaaagtgtagaatataataattgaaaatagtttctggtctagtgtatgtctggtttaaagtagtcataatgaactactttctttgttaaaatttatttgtttggttttgacttgacatgaagtttaaaaaagtgaagtgttcttaaactaaagacaggtaaattatactaaaatattttttaattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="11943" stop="13009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12243" g_stop="12709" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="TG337-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="TG337-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12243" e_stop="12709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTCTGCTGTCTCTGGACTAGAACTTTCAATGGCAAAGCATCATCACCAATGTGAGTCCATATCTTTTGGCAGATCTGTTGTTCCCTAATGGCCCCCTTGCCCATATCCCTTGGTGAAGAAAATGAAGAATCATAAGTCATATCTATTATATTTTACAGCTTTCTTCCATATTATTAAAAGATGCTCATTCTTGTTATGTCAAAACAGTACTTATTAGATGATATTCTGATGCTCTAGCTAACTGATTAACTGAAAAGACCTAGGAGTGTTTATGACAAAGTGTAGAATATAATAATTGAAAATAGTTTCTGGTCTAGTGTATGTCTGGTTTAAAGTAGTCATAATGAACTACTTTCTTTGTTAAAATTTATTTGTTTGGTTTTGACTTGACATGAAGTTTAAAAAAGTGAAGTGTTCTTAAACTAAAGACAGGTAAATTATACTAAAATATTTTTTAATTTTG</genome_strand>
        <mrna_strand>TGTTCTCTGCTGTCTCTGGACTAGAACTTTCAATGGCAAAGCATCATCACCAATGTGAGTCCATATCTTTTGGCAGATCTGTTGTTCCCTAATGGCCCCCTTGCCCATATCCCTTGGTGAAGAAAATGAAGAATCATAAGTCATATCTATTATATTTTACAGCTTTCTTCCATATTATTAAAAGATGCTCATTCTTGTTATGTCAAAACAGTACTTATTAGATGATATTCTGATGCTCTAGCTAACTGATTAACTGAAAAGACCTAGGAGTGTTTATGACAAAGTGTAGAATATAATAATTGAAAATAGTTTCTGGTCTAGTGTATGTCTGGTTTAAAGTAGTCATAATGAACTACTTTCTTTGTTAAAATTTATTTGTTTGGTTTTGACTTGACATGAAGTTTAAAAAAGTGAAGTGTTCTTAAACTAAAGACAGGTAAATTATACTAAAATATTTTTTAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG518-F" ref_strand="+" ref_description="TG518-F">
      <seq>tgttctctgctgtctctggactagaactttcaatggcaaagcatcatcaccaatgtgagtccatatcttttggcagatctgttgttccctaatggcccccttgcccatatcccttggtgaagaaaatgaagaatcataagtcatatctattatattttacagctttcttccatattattaaaagatgctcattcttgttatgtcaaaacagtacttattagatgatattctgatgctctagctaactgattaactgaaaagacctaggagtgtttatgacaaagtgtagaatataataattgaaaatagtttctggtctagtgtatgtctggtttaaagtagtcataatgaactactttctttgttaaaatttatttgtttggttttgacttgacatgaagtttaaaaaagtgaagtgttcttaaactaaagacaggtaaattatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="+" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="11943" stop="12991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12243" g_stop="12691" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="+" ref_id="TG518-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="+"/>
        <rDNA rDNA_id="TG518-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12243" e_stop="12691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTCTGCTGTCTCTGGACTAGAACTTTCAATGGCAAAGCATCATCACCAATGTGAGTCCATATCTTTTGGCAGATCTGTTGTTCCCTAATGGCCCCCTTGCCCATATCCCTTGGTGAAGAAAATGAAGAATCATAAGTCATATCTATTATATTTTACAGCTTTCTTCCATATTATTAAAAGATGCTCATTCTTGTTATGTCAAAACAGTACTTATTAGATGATATTCTGATGCTCTAGCTAACTGATTAACTGAAAAGACCTAGGAGTGTTTATGACAAAGTGTAGAATATAATAATTGAAAATAGTTTCTGGTCTAGTGTATGTCTGGTTTAAAGTAGTCATAATGAACTACTTTCTTTGTTAAAATTTATTTGTTTGGTTTTGACTTGACATGAAGTTTAAAAAAGTGAAGTGTTCTTAAACTAAAGACAGGTAAATTATACTA</genome_strand>
        <mrna_strand>TGTTCTCTGCTGTCTCTGGACTAGAACTTTCAATGGCAAAGCATCATCACCAATGTGAGTCCATATCTTTTGGCAGATCTGTTGTTCCCTAATGGCCCCCTTGCCCATATCCCTTGGTGAAGAAAATGAAGAATCATAAGTCATATCTATTATATTTTACAGCTTTCTTCCATATTATTAAAAGATGCTCATTCTTGTTATGTCAAAACAGTACTTATTAGATGATATTCTGATGCTCTAGCTAACTGATTAACTGAAAAGACCTAGGAGTGTTTATGACAAAGTGTAGAATATAATAATTGAAAATAGTTTCTGGTCTAGTGTATGTCTGGTTTAAAGTAGTCATAATGAACTACTTTCTTTGTTAAAATTTATTTGTTTGGTTTTGACTTGACATGAAGTTTAAAAAAGTGAAGTGTTCTTAAACTAAAGACAGGTAAATTATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG337-R" ref_strand="+" ref_description="TG337-R">
      <seq>atacaaatcatttcagcataatattcattagttccacagttattgcttcttgtttcaacaaaaagattttcagtatgatcttagactataacaataatcagtgacatcttcatcatccatagaaacaaaataagtttgcttctgactcccataatttcaaaaattaactcgagaaatcatcaaaactccatactagttaagcaagcatcatcaaataactgtcctgtatctgtaattatatgattggtttgaaccacattttcagattttttcttgatacagaaatccataagttgctagtatgagtccattttagagaaggaatatccatattatgggccacacgcaatatttatatgaataataagatttcttagcttattctccaaacaattgcaacaaaactatcagttatcattttgctgtcaaacagacacacccaactatttaggtaattagtttctacagttccttatcataatcactatctacaattttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="14379" stop="13279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14079" g_stop="13579" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="TG337-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="TG337-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14079" e_stop="13579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACAAATCATTTCAGCATAATATTCATTAGTTCCACAGTTATTGCTTCTTGTTTCAACAAAAAGATTTTCAGTATGATCTTAGACTATAACAATAATCAGTGACATCTTCATCATCCATAGAAACAAAATAAGTTTGCTTCTGACTCCCATAATTTCAAAAATTAACTCGAGAAATCATCAAAACTCCATACTAGTTAAGCAAGCATCATCAAATAACTGTCCTGTATCTGTAATTATATGATTGGTTTGAACCACATTTTCAGATTTTTTCTTGATACAGAAATCCATAAGTTGCTAGTATGAGTCCATTTTAGAGAAGGAATATCCATATTATGGGCCACACGCAATATTTATATGAATAATAAGATTTCTTAGCTTATTCTCCAAACAATTGCAACAAAACTATCAGTTATCATTTTGCTGTCAAACAGACACACCCAACTATTTAGGTAATTAGTTTCTACAGTTCCTTATCATAATCACTATCTACAATTTTAAG</genome_strand>
        <mrna_strand>ATACAAATCATTTCAGCATAATATTCATTAGTTCCACAGTTATTGCTTCTTGTTTCAACAAAAAGATTTTCAGTATGATCTTAGACTATAACAATAATCAGTGACATCTTCATCATCCATAGAAACAAAATAAGTTTGCTTCTGACTCCCATAATTTCAAAAATTAACTCGAGAAATCATCAAAACTCCATACTAGTTAAGCAAGCATCATCAAATAACTGTCCTGTATCTGTAATTATATGATTGGTTTGAACCACATTTTCAGATTTTTTCTTGATACAGAAATCCATAAGTTGCTAGTATGAGTCCATTTTAGAGAAGGAATATCCATATTATGGGCCACACGCAATATTTATATGAATAATAAGATTTCTTAGCTTATTCTCCAAACAATTGCAACAAAACTATCAGTTATCATTTTGCTGTCAAACAGACACACCCAACTATTTAGGTAATTAGTTTCTACAGTTCCTTATCATAATCACTATCTACAATTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG518-R" ref_strand="+" ref_description="TG518-R">
      <seq>ggagacaagcttgcatgcctgcagatacaaatcatttcagcataatattcattagttccacagttattgcttcttgtttcaacaaaaagattttcagtatgatcttagactataacaataatcagtgacatcttcatcatccatagaaacaaaataagtttgcttctgactcccataatttcaaaaattaactcgagaaatcatcaaaactccatactagttaagcaagcatcatcaaataactgtcctgtatctgtaattatatgattggtttgaaccacattttcagattttttcttgatacagaaatccataagttgctagtatgagtccattttagagaaggaatatccatattatgggccacacgcaatatttatatgaataataagatttcttagcttattctccaaacaattgcaacaaaactatcagttatcattttgctgtcaaacagacacacccaactatttaggtaattagtttctacagttcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0065M14-W1aeU/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLm0065M14.2" temp_strand="-" temp_description="C02SLm0065M14.2  AC215484.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0065M14 sequenced_by:kribb upload_account_name:korea">
        <position start="14385" stop="13305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14085" g_stop="13605" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="499" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0065M14.2" gen_strand="-" ref_id="TG518-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0065M14.2" gen_strand="-"/>
        <rDNA rDNA_id="TG518-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14085" e_stop="13605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAGATACAAATCATTTCAGCATAATATTCATTAGTTCCACAGTTATTGCTTCTTGTTTCAACAAAAAGATTTTCAGTATGATCTTAGACTATAACAATAATCAGTGACATCTTCATCATCCATAGAAACAAAATAAGTTTGCTTCTGACTCCCATAATTTCAAAAATTAACTCGAGAAATCATCAAAACTCCATACTAGTTAAGCAAGCATCATCAAATAACTGTCCTGTATCTGTAATTATATGATTGGTTTGAACCACATTTTCAGATTTTTTCTTGATACAGAAATCCATAAGTTGCTAGTATGAGTCCATTTTAGAGAAGGAATATCCATATTATGGGCCACACGCAATATTTATATGAATAATAAGATTTCTTAGCTTATTCTCCAAACAATTGCAACAAAACTATCAGTTATCATTTTGCTGTCAAACAGACACACCCAACTATTTAGGTAATTAGTTTCTACAGTTCCTTA</genome_strand>
        <mrna_strand>CTGCAGATACAAATCATTTCAGCATAATATTCATTAGTTCCACAGTTATTGCTTCTTGTTTCAACAAAAAGATTTTCAGTATGATCTTAGACTATAACAATAATCAGTGACATCTTCATCATCCATAGAAACAAAATAAGTTTGCTTCTGACTCCCATAATTTCAAAAATTAACTCGAGAAATCATCAAAACTCCATACTAGTTAAGCAAGCATCATCAAATAACTGTCCTGTATCTGTAATTATATGATTGGTTTGAACCACATTTTCAGATTTTTTCTTGATACAGAAATCCATAAGTTGCTAGTATGAGTCCATTTTAGAGAAGGAATATCCATATTATGGGCCACACGCAATATTTATATGAATAATAAGATTTCTTAGCTTATTCTCCAAACAATTGCAACAAAACTATCAGTTATCATTTTGCTGTCAAACAGACACACCCAACTATTTAGGTAATTAGTTTCTACAGTTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12243" PGL_stop="12709"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12243" e_stop="12709"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12243" e_stop="12709" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12243" stop="12709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG337-F" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12243" stop="12691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG518-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTCTCTGCTGTCTCTGGACTAGAACTTTCAATGGCAAAGCATCATCACCAATGTGAGTCCATATCTTTTGGCAGATCTGTTGTTCCCTAATGGCCCCCTTGCCCATATCCCTTGGTGAAGAAAATGAAGAATCATAAGTCATATCTATTATATTTTACAGCTTTCTTCCATATTATTAAAAGATGCTCATTCTTGTTATGTCAAAACAGTACTTATTAGATGATATTCTGATGCTCTAGCTAACTGATTAACTGAAAAGACCTAGGAGTGTTTATGACAAAGTGTAGAATATAATAATTGAAAATAGTTTCTGGTCTAGTGTATGTCTGGTTTAAAGTAGTCATAATGAACTACTTTCTTTGTTAAAATTTATTTGTTTGGTTTTGACTTGACATGAAGTTTAAAAAAGTGAAGTGTTCTTAAACTAAAGACAGGTAAATTATACTAAAATATTTTTTAATTTTG</gDNA_template>
            <first_frame> C  S  L  L  S  L  D  *  N  F  Q  W  Q  S  I  I  T  N  V  S  P  Y  L  L  A  D  L  L  F  P  N  G  P  L  A  H  I  P  W  *  R  K  *  R  I  I  S  H  I  Y  Y  I  L  Q  L  S  S  I  L  L  K  D  A  H  S  C  Y  V  K  T  V  L  I  R  *  Y  S  D  A  L  A  N  *  L  T  E  K  T  *  E  C  L  *  Q  S  V  E  Y  N  N  *  K  *  F  L  V  *  C  M  S  G  L  K  *  S  *  *  T  T  F  F  V  K  I  Y  L  F  G  F  D  L  T  *  S  L  K  K  *  S  V  L  K  L  K  T  G  K  L  Y  *  N  I  F  *  F   </first_frame>
            <second_frame>  V  L  C  C  L  W  T  R  T  F  N  G  K  A  S  S  P  M  *  V  H  I  F  W  Q  I  C  C  S  L  M  A  P  L  P  I  S  L  G  E  E  N  E  E  S  *  V  I  S  I  I  F  Y  S  F  L  P  Y  Y  *  K  M  L  I  L  V  M  S  K  Q  Y  L  L  D  D  I  L  M  L  *  L  T  D  *  L  K  R  P  R  S  V  Y  D  K  V  *  N  I  I  I  E  N  S  F  W  S  S  V  C  L  V  *  S  S  H  N  E  L  L  S  L  L  K  F  I  C  L  V  L  T  *  H  E  V  *  K  S  E  V  F  L  N  *  R  Q  V  N  Y  T  K  I  F  F  N  F  </second_frame>
            <third_frame>   F  S  A  V  S  G  L  E  L  S  M  A  K  H  H  H  Q  C  E  S  I  S  F  G  R  S  V  V  P  *  W  P  P  C  P  Y  P  L  V  K  K  M  K  N  H  K  S  Y  L  L  Y  F  T  A  F  F  H  I  I  K  R  C  S  F  L  L  C  Q  N  S  T  Y  *  M  I  F  *  C  S  S  *  L  I  N  *  K  D  L  G  V  F  M  T  K  C  R  I  *  *  L  K  I  V  S  G  L  V  Y  V  W  F  K  V  V  I  M  N  Y  F  L  C  *  N  L  F  V  W  F  *  L  D  M  K  F  K  K  V  K  C  S  *  T  K  D  R  *  I  I  L  K  Y  F  L  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0065M14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="14085" PGL_stop="13579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14085" e_stop="13579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14085" e_stop="13579" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14085" stop="13605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG518-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14079" stop="13579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG337-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCAGATACAAATCATTTCAGCATAATATTCATTAGTTCCACAGTTATTGCTTCTTGTTTCAACAAAAAGATTTTCAGTATGATCTTAGACTATAACAATAATCAGTGACATCTTCATCATCCATAGAAACAAAATAAGTTTGCTTCTGACTCCCATAATTTCAAAAATTAACTCGAGAAATCATCAAAACTCCATACTAGTTAAGCAAGCATCATCAAATAACTGTCCTGTATCTGTAATTATATGATTGGTTTGAACCACATTTTCAGATTTTTTCTTGATACAGAAATCCATAAGTTGCTAGTATGAGTCCATTTTAGAGAAGGAATATCCATATTATGGGCCACACGCAATATTTATATGAATAATAAGATTTCTTAGCTTATTCTCCAAACAATTGCAACAAAACTATCAGTTATCATTTTGCTGTCAAACAGACACACCCAACTATTTAGGTAATTAGTTTCTACAGTTCCTTATCATAATCACTATCTACAATTTTAAG</gDNA_template>
            <first_frame> L  Q  I  Q  I  I  S  A  *  Y  S  L  V  P  Q  L  L  L  L  V  S  T  K  R  F  S  V  *  S  *  T  I  T  I  I  S  D  I  F  I  I  H  R  N  K  I  S  L  L  L  T  P  I  I  S  K  I  N  S  R  N  H  Q  N  S  I  L  V  K  Q  A  S  S  N  N  C  P  V  S  V  I  I  *  L  V  *  T  T  F  S  D  F  F  L  I  Q  K  S  I  S  C  *  Y  E  S  I  L  E  K  E  Y  P  Y  Y  G  P  H  A  I  F  I  *  I  I  R  F  L  S  L  F  S  K  Q  L  Q  Q  N  Y  Q  L  S  F  C  C  Q  T  D  T  P  N  Y  L  G  N  *  F  L  Q  F  L  I  I  I  T  I  Y  N  F  K </first_frame>
            <second_frame>  C  R  Y  K  S  F  Q  H  N  I  H  *  F  H  S  Y  C  F  L  F  Q  Q  K  D  F  Q  Y  D  L  R  L  *  Q  *  S  V  T  S  S  S  S  I  E  T  K  *  V  C  F  *  L  P  *  F  Q  K  L  T  R  E  I  I  K  T  P  Y  *  L  S  K  H  H  Q  I  T  V  L  Y  L  *  L  Y  D  W  F  E  P  H  F  Q  I  F  S  *  Y  R  N  P  *  V  A  S  M  S  P  F  *  R  R  N  I  H  I  M  G  H  T  Q  Y  L  Y  E  *  *  D  F  L  A  Y  S  P  N  N  C  N  K  T  I  S  Y  H  F  A  V  K  Q  T  H  P  T  I  *  V  I  S  F  Y  S  S  L  S  *  S  L  S  T  I  L   </second_frame>
            <third_frame>   A  D  T  N  H  F  S  I  I  F  I  S  S  T  V  I  A  S  C  F  N  K  K  I  F  S  M  I  L  D  Y  N  N  N  Q  *  H  L  H  H  P  *  K  Q  N  K  F  A  S  D  S  H  N  F  K  N  *  L  E  K  S  S  K  L  H  T  S  *  A  S  I  I  K  *  L  S  C  I  C  N  Y  M  I  G  L  N  H  I  F  R  F  F  L  D  T  E  I  H  K  L  L  V  *  V  H  F  R  E  G  I  S  I  L  W  A  T  R  N  I  Y  M  N  N  K  I  S  *  L  I  L  Q  T  I  A  T  K  L  S  V  I  I  L  L  S  N  R  H  T  Q  L  F  R  *  L  V  S  T  V  P  Y  H  N  H  Y  L  Q  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0065M14.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 13 chains have been computed
$ 
$ memory statistics:
$ 7648 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 1912 bytes was the average size of a spliced alignment
$ 6704 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3352 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 13 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:40:46
-->
