<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:34:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474349" ref_strand="+" ref_description="SGN-E474349 [cSTB-36-A10]">
      <seq>cattcagggaactgttttggatggccatgcacttatattgcaactttgtcacactaagaaggaccaattaccaaagagagctgagaatgacaagagttcaactaagttgcttgttaggaatgttgcttttgaggcaactgaaaaggatctcaggcaattattcagtccattcgggcaggtacttcctcttaactattggtaacatagggtgatactatgtagtaaaaaggtgatactaggtttccctgtgctggaagtgccaaagatagatgttggttgaggataaatatggctgcgaggcatgagcatgcatgatatcctgtacaggttcattttgattccacgtgagacttttttgtgtggaactcataaaattgcacttgtgctgctgatctgttggtctgaaacatgaaaactgaatttcacctgattaattattgttgctattattttaaaatggtggtatctgcgccagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="1051" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="751" g_stop="279" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E474349" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="751" e_stop="279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCAGGGAACTGTTTTGGATGGCCATGCACTTATATTGCAACTTTGTCACACTAAGAAGGACCATTTACCAAAGAGAGCTGAGAATGACAAGAGTTCAACTAAGTTGCTTGTTAGGAATGTTGCTTTTGAGGCAACTGAAAAGGATCTCAGGCAATTATTCAGTCCATTCGGGCAGGTACATCCTCTTAACTATTGGTAACATAGAGTGATACTATGTAGTAAAAAGGTGATACTAGGTTTCCCTGTGCTGGAAGCACC--A-A-AG--G-TAGTTGAGGATAAATATGTCTGCGAGGCACAAGCATGCATGATATCCTTGTACAGTTTCATTTTGATTCCACGTGAGACTTTTTTGTGTGGAACTCATAAAATTGCACTTATGCTGATGATCTGTTGGTCTGAATTGTGAAAACTGAATTTCACCTGATTAATTATTGTTGCTGTTATTTTAAAATGGTGGTATCTGCGTCAGTTTG</genome_strand>
        <mrna_strand>CATTCAGGGAACTGTTTTGGATGGCCATGCACTTATATTGCAACTTTGTCACACTAAGAAGGACCAATTACCAAAGAGAGCTGAGAATGACAAGAGTTCAACTAAGTTGCTTGTTAGGAATGTTGCTTTTGAGGCAACTGAAAAGGATCTCAGGCAATTATTCAGTCCATTCGGGCAGGTACTTCCTCTTAACTATTGGTAACATAGGGTGATACTATGTAGTAAAAAGGTGATACTAGGTTTCCCTGTGCTGGAAGTGCCAAAGATAGATGTTGGTTGAGGATAAATATGGCTGCGAGGCATGAGCATGCATGATATCC-TGTACAGGTTCATTTTGATTCCACGTGAGACTTTTTTGTGTGGAACTCATAAAATTGCACTTGTGCTGCTGATCTGTTGGTCTGAAACATGAAAACTGAATTTCACCTGATTAATTATTGTTGCTATTATTTTAAAATGGTGGTATCTGCGCCAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417152" ref_strand="+" ref_description="SGN-E417152 [STM-24-H22]">
      <seq>ccgatacggattatttcaatagtagagtgaggaaagattggtccgactcagaaagtagtgaatacgatggtagtgataatgaaagtgacaagagcagtgaatatgcaaatgctggtaatatccttgaacctgatgatacagaggaatttttgagtgatgggctcaccacatctaacaatgagtcgcttgagcctgttgacccttcatcaagtgttaaggatgaaaaataagaatatctggagatcggacgattatttgatcgtatccttccatacaccactacggaagaggagctggaagaacactttagagcatttggcactgtctcacaggttcatattgttgatgacaaagatacaaagcggtccataggaattgcatatgttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="5423" stop="4304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5123" g_stop="4838" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4837" i_stop="4712" i_length="126">
            <donor d_prob="0.984" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4711" g_stop="4604" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="391" r_length="108" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E417152" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5123" e_stop="4838"/>
          <exon e_start="4711" e_stop="4604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATACGGATTATTTCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATGAGGCAGCGCTTGAGCTTGTTGACCCTTCATCAAGTGTTAAGGACGAAATAGAAGAAGATCTGGAGAGCGGACGATTATTTGTTCGTAATCTTCCATACACCACTACGTAATACATCTTCGTTCTGCTTTTTCCTTTTTTTGGGCGATTTAGTCAACTCAATATGTTGCACTGTTTTATGACTTTAATGAACCTAATACATGTTCTTGTTAAACTGATGGGTTTATGATTCAGGGAAGAGGAGCTGGAAGAACACTTTAGAGCATTTGGCAATGTCTCACAGGTTCATATTGTTGTTGACAAAGATACAAAGCGGTCCAAAGGAATTGCATATGTTCTCTA</genome_strand>
        <mrna_strand>CCGATACGGATTATTTCAATAGTAGAGTGAGGAAAGATTGGTCCGACTCAGAAAGTAGTGAATACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAATATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGGCTCACCACATCTAACAATGA-G--TCGCTTGAGCCTGTTGACCCTTCATCAAGTGTTAAGGATGAAAAATAAGAATATCTGGAGATCGGACGATTATTTGATCGTATCCTTCCATACACCACTAC..............................................................................................................................GGAAGAGGAGCTGGAAGAACACTTTAGAGCATTTGGCACTGTCTCACAGGTTCATATTGTTGATGACAAAGATACAAAGCGGTCCATAGGAATTGCATATGTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440623" ref_strand="+" ref_description="SGN-E440623 [cSTA-17-H14]">
      <seq>ccgatacggattatttcaaaagtagagtgaggaaagattggtccgactcagaaagtagtgaagacgatggtagtgataatgaaagtgacaagagcagtgaagatgcaaatgctggtaatatccttgaacctgatgatacagaggaatttttgagtgatgggctcaccagatctaacaatgagtcgcttgagcctgttgacccttcatcaagtgttaaggatgaaaaagaagaagatctggagagcggacgattatttgttcgtaaccttccatacaccactacggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="5423" stop="4534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5123" g_stop="4838" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4837" i_stop="4712" i_length="126">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4711" g_stop="4707" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="288" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E440623" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5123" e_stop="4838"/>
          <exon e_start="4711" e_stop="4707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATACGGATTATTTCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATGAGGCAGCGCTTGAGCTTGTTGACCCTTCATCAAGTGTTAAGGACGAAATAGAAGAAGATCTGGAGAGCGGACGATTATTTGTTCGTAATCTTCCATACACCACTACGTAATACATCTTCGTTCTGCTTTTTCCTTTTTTTGGGCGATTTAGTCAACTCAATATGTTGCACTGTTTTATGACTTTAATGAACCTAATACATGTTCTTGTTAAACTGATGGGTTTATGATTCAGGGAAG</genome_strand>
        <mrna_strand>CCGATACGGATTATTTCAAAAGTAGAGTGAGGAAAGATTGGTCCGACTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGGCTCACCAGATCTAACAATGA-G--TCGCTTGAGCCTGTTGACCCTTCATCAAGTGTTAAGGATGAAAAAGAAGAAGATCTGGAGAGCGGACGATTATTTGTTCGTAACCTTCCATACACCACTAC..............................................................................................................................GGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246839" ref_strand="+" ref_description="SGN-E246839 [cLEF-41-A10]">
      <seq>tcaaaagtagagtgaggaaagattggtctgattcagaaagtagtgaagacgatggtagtgataatgaaagtgacaagagcagtgaagatgcaaatgctggtaatatccttgaacctgatgatacagaggaatttttgagtgatggtctcaccagatctaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="5408" stop="4644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5108" g_stop="4944" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E246839" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>165</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5108" e_stop="4944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATG</genome_strand>
        <mrna_strand>TCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="8343" stop="7598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8043" g_stop="7891" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8043" e_stop="7891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTACAATTGTATAATTTGTAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412112" ref_strand="+" ref_description="SGN-E412112 [STM-15-D6]">
      <seq>cttcaccatatcttatctcacgtttcacccctaattctttgcctttcacatcatcttcttcttttcctcatgccctaatagaacccacaacaagcacaattgcagccacttctctgacccaagaagagcttacacaaatcaatctactaatcccacgtttatgctcttcaaatcacctcaaagaagttgctaatctcatcacaacagcatttctcacaaacccatctttagaatcaatctctgtttccattttcattcacagactctctctggaacctgaccttacacagcccatgtacttcctcaatcgcctcaagtacaccccaaagactcaatcttttctattacccatttgtaaaatgttagtttctttgtattttaggaacagggaggctactaaagggttaaagatttttcattgggtgtcaaggcctgattttccttgtcctgtggattacggattgtgtgctattttggtgaatggcttttgcaagaatgatatggttgtggaggggttaaaggttttgaggatgatggtagttggggatttgaaggttgggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="11839" stop="12958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12089" g_stop="12658" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E412112" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12089" e_stop="12658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACCATCTCTTCTCTCTCGTTTCACTGCTAATTATTTGCCTTTAACATCATCGTATTCTTCTTCTTCTCCTCATGCCCAAATGGAACCCACAACAAGCATAACTGCAGCAACTTTTCTGACCCAAGAAGAGCTTACACAAATCAATCTACTAATCCCACGTTTGTGCTCTTCAAATCACCTCAAAGAAGCTGCTAATCTCATCACAACAGCATTTCTCACAAACCCATCTTTAGAATCAATTTCTGTTTCCATTTTCATTCACAGACTCTCTCTTGAACCTGACCTTACACAACCCATGTACTTCCTCAATCGCCTCAAGTACACCCCAAAGGCTCAATCTTTTCTATTACCCATTTGTAAAATGTTGGTTTCTTTGTACTTTAGGAACAGGGAGGCTAAGAAAGGTTTAAAGATTTTTCATTGGGTGTCCAGGCCTGATTTCCCTTGTCCTGTAGATTATGGATTGTGTGCTATTTTGGTGAACGGGTTTTGCAAGAATGATATGGTTGTGGAGGGGTTGAAGGTTTTGAGGATGATGGTAGTTGGGAATTTGAAGGTTGGGGGTG</genome_strand>
        <mrna_strand>CTTCACCATATCTTATCTCACGTTTCACCCCTAATTCTTTGCCTTT--CA-CATC--A-TCTTCTTCTTTTCCTCATGCCCTAATAGAACCCACAACAAGCACAATTGCAGCCACTTCTCTGACCCAAGAAGAGCTTACACAAATCAATCTACTAATCCCACGTTTATGCTCTTCAAATCACCTCAAAGAAGTTGCTAATCTCATCACAACAGCATTTCTCACAAACCCATCTTTAGAATCAATCTCTGTTTCCATTTTCATTCACAGACTCTCTCTGGAACCTGACCTTACACAGCCCATGTACTTCCTCAATCGCCTCAAGTACACCCCAAAGACTCAATCTTTTCTATTACCCATTTGTAAAATGTTAGTTTCTTTGTATTTTAGGAACAGGGAGGCTACTAAAGGGTTAAAGATTTTTCATTGGGTGTCAAGGCCTGATTTTCCTTGTCCTGTGGATTACGGATTGTGTGCTATTTTGGTGAATGGCTTTTGCAAGAATGATATGGTTGTGGAGGGGTTAAAGGTTTTGAGGATGATGGTAGTTGGGGATTTGAAGGTTGGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470072" ref_strand="+" ref_description="SGN-E470072 [cSTB-16-J24]">
      <seq>cttcaccatatcttatctcacgtttcacccctaattctttgcctttcacatcatcttcttcttttcctcatgccctaatagaacccacaacaagcacaattgcagccacttctctgacccaagaagagcttacacaaatcaatctactaatcccacgtttatgctcttcaaatcacctcaaagaagttgctaatctcatcacaacagcatttctcacaaacccatctttagaatcaatctctgtttccattttcattcacagactctctctggaacctgaccttacacagcccatgtacttcctcaatcgcctcaagtacaccccaaagactcaatcttttctattacccatttgtaaaatgttagtttctttgtatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="11839" stop="12774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12089" g_stop="12474" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E470072" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12089" e_stop="12474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACCATCTCTTCTCTCTCGTTTCACTGCTAATTATTTGCCTTTAACATCATCGTATTCTTCTTCTTCTCCTCATGCCCAAATGGAACCCACAACAAGCATAACTGCAGCAACTTTTCTGACCCAAGAAGAGCTTACACAAATCAATCTACTAATCCCACGTTTGTGCTCTTCAAATCACCTCAAAGAAGCTGCTAATCTCATCACAACAGCATTTCTCACAAACCCATCTTTAGAATCAATTTCTGTTTCCATTTTCATTCACAGACTCTCTCTTGAACCTGACCTTACACAACCCATGTACTTCCTCAATCGCCTCAAGTACACCCCAAAGGCTCAATCTTTTCTATTACCCATTTGTAAAATGTTGGTTTCTTTGTACTTT</genome_strand>
        <mrna_strand>CTTCACCATATCTTATCTCACGTTTCACCCCTAATTCTTTGCCTTT--CA-CATC--A-TCTTCTTCTTTTCCTCATGCCCTAATAGAACCCACAACAAGCACAATTGCAGCCACTTCTCTGACCCAAGAAGAGCTTACACAAATCAATCTACTAATCCCACGTTTATGCTCTTCAAATCACCTCAAAGAAGTTGCTAATCTCATCACAACAGCATTTCTCACAAACCCATCTTTAGAATCAATCTCTGTTTCCATTTTCATTCACAGACTCTCTCTGGAACCTGACCTTACACAGCCCATGTACTTCCTCAATCGCCTCAAGTACACCCCAAAGACTCAATCTTTTCTATTACCCATTTGTAAAATGTTAGTTTCTTTGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314474" ref_strand="+" ref_description="SGN-E314474 [cTOB-1-O1]">
      <seq>ccctgggcactctctcactgacagtagagtggataacgtttcaagaacccaaattccatcgatgtatgaatcttctttactgaaattccactaaatttttagctcactctcaagaatggtttcttccaccattctaattcagcaaccgacgaacttcttccaccagccagagcttcaccatcagctatggagaggtctgcagcatggatgtgttgcatcattgcagaaacaacctattttggtatgtaatagtaacaagagaaacagacctttgagagtttcttcaagtgctaatggtgctgttacttcttccactttggaggcctatgattcttctccgtctccttctgcatttcctctttttacacccccttctcaaccccaagatactcccgcttctcagttggaactggcagatcctgatttctacaaaataggatatgttagaagttttcgagcctacgggattgaattcagggagggaccaaatgggtatggagtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="15292" stop="17385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15592" g_stop="15775" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15776" i_stop="15870" i_length="95">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15871" g_stop="16089" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="403" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16090" i_stop="16982" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16983" g_stop="17085" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="506" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E314474" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15592" e_stop="15775"/>
          <exon e_start="15871" e_stop="16089"/>
          <exon e_start="16983" e_stop="17085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGGGCACTCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAGGTTAGGCCTTCGCCCCCACAAAACCAAATCATTCAAGAATGAATCTTTTTGCTTTTTGATTTTATGGGTGTTTGATTTTTTAATAATTGAACCAGCTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAGGTATTTTCTACTTGCCCCTTCTGTTTCATGTTCTTGAAGTTCAAGTTTAGTTTAATCACATCTTGTTACTTTCTGTGTGATAAGTGCTGTTTTCTTTTGGTAAGCTCACTGTATAAGTGCAATATGCAACACTTTTATGTACTCTTTTTTGTAGTTAGAGTTTTGGCACTGCATACCTTTTCCTCTTCAGTCATGGTTTCTTTTACTTTAATAGAATGCCAAACAAACAATGGACAACAATAAGCACTAGTCTCTCAATAAATTGAAGGAAGTGACAGCCAGGCAGTTGATGTTTGGAAAAGATAGGAGTTACACTTTGAAGATCGATGGAATTGTTCTTATGAATTGGTTTTGTTCCTCATTCAGATTTTCTTCACAAATTATTTGGTTCTAGGTCAGGTCCCATATAAATTTTTGGTGATTACTGTGTTAGAAATACAAAATGTTCTACATCAGGTATAGGGGAATCATATACCTAAAGCATTCTCTACTACTCCTTCACTGCATAAATTTTTCTTTAATATGTCGGAATTTCTAACCAATTAGTAAGTCCGTTCTCACACGTGTGAGTCTGCATTGGTTTCAGATATATAGAATGCCTAACATCTGGTGTTTAGGGGCATCCAAAGGGTTATGATGATTTTGAGCTACTCCCCAATTACCTTAAGATTTTCACTTAGATGCTCATGTTCGTTCTCACGTTCTCATGCATAGATATCCCATTTCTATTGTTACATAGTCAAACTAATGGTTGGAATCCCTCTACTTTCTCGGTCTTACATCCTTTGAGAAGCTGATGAACATATATTTTCCTATTTGATTATTTCAAATTATCCTTATTTTCTCCTGTTCTAATTGTTGATGATGGTGGTATAACATTTTCATATGAACAGTTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTG</genome_strand>
        <mrna_strand>CCCTGGGCACTCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAG...............................................................................................CTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAAATGGGTATGGAGTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366996" ref_strand="+" ref_description="SGN-E366996 [cLPT-6-F23]">
      <seq>tctctcactgacagtagagtggataacgtttcaagaacccaaattccatcgatgtatgaatcttctttactgaaattccactaaatttttagctcactctcaagaatggtttcatccaccattctaattcagcaaccgacgaacttcttccaccagccagagcttcaccatcagctatggagaggtctgcagcatggatgtgttgcatcattgcagaaacaacctattttggtatgtaatagtaacaagagaaacagacctttgagagtttcttcaagtgctaatggtgctgttacttcttccactttggaggcctatgattcttctccgtctccttctgcatttcctctttttacacccccttctcaaccccaagatactcccgcttctcagttggaactggcagatcctgatttctacaaaataggttatgttagaagttttcgagcctacgggattgaattcagggagggaccacatgggtatggagtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="15302" stop="17385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15602" g_stop="15775" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15776" i_stop="15870" i_length="95">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15871" g_stop="16089" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="393" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16090" i_stop="16982" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16983" g_stop="17085" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="496" r_length="103" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E366996" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15602" e_stop="15775"/>
          <exon e_start="15871" e_stop="16089"/>
          <exon e_start="16983" e_stop="17085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAGGTTAGGCCTTCGCCCCCACAAAACCAAATCATTCAAGAATGAATCTTTTTGCTTTTTGATTTTATGGGTGTTTGATTTTTTAATAATTGAACCAGCTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAGGTATTTTCTACTTGCCCCTTCTGTTTCATGTTCTTGAAGTTCAAGTTTAGTTTAATCACATCTTGTTACTTTCTGTGTGATAAGTGCTGTTTTCTTTTGGTAAGCTCACTGTATAAGTGCAATATGCAACACTTTTATGTACTCTTTTTTGTAGTTAGAGTTTTGGCACTGCATACCTTTTCCTCTTCAGTCATGGTTTCTTTTACTTTAATAGAATGCCAAACAAACAATGGACAACAATAAGCACTAGTCTCTCAATAAATTGAAGGAAGTGACAGCCAGGCAGTTGATGTTTGGAAAAGATAGGAGTTACACTTTGAAGATCGATGGAATTGTTCTTATGAATTGGTTTTGTTCCTCATTCAGATTTTCTTCACAAATTATTTGGTTCTAGGTCAGGTCCCATATAAATTTTTGGTGATTACTGTGTTAGAAATACAAAATGTTCTACATCAGGTATAGGGGAATCATATACCTAAAGCATTCTCTACTACTCCTTCACTGCATAAATTTTTCTTTAATATGTCGGAATTTCTAACCAATTAGTAAGTCCGTTCTCACACGTGTGAGTCTGCATTGGTTTCAGATATATAGAATGCCTAACATCTGGTGTTTAGGGGCATCCAAAGGGTTATGATGATTTTGAGCTACTCCCCAATTACCTTAAGATTTTCACTTAGATGCTCATGTTCGTTCTCACGTTCTCATGCATAGATATCCCATTTCTATTGTTACATAGTCAAACTAATGGTTGGAATCCCTCTACTTTCTCGGTCTTACATCCTTTGAGAAGCTGATGAACATATATTTTCCTATTTGATTATTTCAAATTATCCTTATTTTCTCCTGTTCTAATTGTTGATGATGGTGGTATAACATTTTCATATGAACAGTTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTG</genome_strand>
        <mrna_strand>TCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCATCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAG...............................................................................................CTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAACTGGCAGATCCTGATTTCTACAAAATAGGTTATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCACATGGGTATGGAGTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224362" ref_strand="+" ref_description="SGN-E224362 [cLEL-27-B2](-)">
      <seq>attatcaattcaaccaatcccgagacagattcggacttgaggttggcgtgccttcttttatatgcttttgattgcaaggacaacttttggcagctatacggagacttcttgcctagtgctgatgaatgcactagctttcttctagctaccgaggtctggatatgagtatcatccaaatttcagtgcattcaattaatgtaatattttgtggaagattctatagaaaatgctatgcattcacaaaattattctgcactttgttatggtgttctgctgaggttcaagtttgagtaactcgaaatgtgaattagaaaagcttttgtgatattcacactgttatgtgacctttgctattagtgggttctaatttataacaaaagtttcttcggctggaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="17399" stop="18636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17699" g_stop="17722" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17723" i_stop="17966" i_length="244">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17967" g_stop="18335" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="393" r_length="369" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="422"/>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E224362" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17699" e_stop="17722"/>
          <exon e_start="17967" e_stop="18335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCAATTCAACCAATCCCGAGGTAAAAGGATGCATTTTCCTTTTAAATATTTTAATTTTCCTACTAAATATTATTTAATGGAACACATGGGAGAATATTTATCCACATTTTCTTTGATTGGATAAAAATAAAAATTAGACGTCTTACCTTTTCCCTAATGGTACACATGAGAGGATTTGTTTTTATGCTCTAAATTTTTTCATTTTCTTTTTGGTTTTCTAAGATTTCTTGTGACTTTTTAATATTGATTACCTTCTTATGGCAGACAGATTCGGACTTGAGGTTGGCGTGCCTTCTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAGGTCTGGATATGAGTATCATCCAAATTTCAGTGCATTCAATTAATGTAATATTTTGTGGAAGATTCTATAGAAAATGCTATGCATTCACAAAATTATTCTGCACTTTGTTATGGTGTTCTGCTGAGGTTCAAGTTTGAGTAACTCGAAATGTGAATTAGAAAAGCTTTTGTGATATTCACACTGTTATGTGACCTTTGCTATTAGTGGGTTCTAATTTATAACAAAAGTTTCTTCGACTGA</genome_strand>
        <mrna_strand>ATTATCAATTCAACCAATCCCGAG....................................................................................................................................................................................................................................................ACAGATTCGGACTTGAGGTTGGCGTGCCTTCTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAGGTCTGGATATGAGTATCATCCAAATTTCAGTGCATTCAATTAATGTAATATTTTGTGGAAGATTCTATAGAAAATGCTATGCATTCACAAAATTATTCTGCACTTTGTTATGGTGTTCTGCTGAGGTTCAAGTTTGAGTAACTCGAAATGTGAATTAGAAAAGCTTTTGTGATATTCACACTGTTATGTGACCTTTGCTATTAGTGGGTTCTAATTTATAACAAAAGTTTCTTCGGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224862" ref_strand="+" ref_description="SGN-E224862 [cLEL-27-B2](-)">
      <seq>cttttatatgcttttgattgcaaggacaacttttggcagctatacggagacttcttgcctagtgctgatgaatgcactagcttttttctagctaccgaggtctggatatgagtatcatcccaatttcagtgcattcaattaatgtaatattttgtggaagattctatagaaaatgctatgcattcccaaaattattctgccctttgttatggtgttctgctgaggttcaagtttgagtaactcgaaatgtgaattagaaaagcttttgtgatattcacactgttatgtgacctttgctattagtgggttctaatttataacaaaagtttcttcggctggaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="17697" stop="18636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17997" g_stop="18335" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="368"/>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E224862" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17997" e_stop="18335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAGGTCTGGATATGAGTATCATCCAAATTTCAGTGCATTCAATTAATGTAATATTTTGTGGAAGATTCTATAGAAAATGCTATGCATTCACAAAATTATTCTGCACTTTGTTATGGTGTTCTGCTGAGGTTCAAGTTTGAGTAACTCGAAATGTGAATTAGAAAAGCTTTTGTGATATTCACACTGTTATGTGACCTTTGCTATTAGTGGGTTCTAATTTATAACAAAAGTTTCTTCGACTGA</genome_strand>
        <mrna_strand>CTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTTTTCTAGCTACCGAGGTCTGGATATGAGTATCATCCCAATTTCAGTGCATTCAATTAATGTAATATTTTGTGGAAGATTCTATAGAAAATGCTATGCATTCCCAAAATTATTCTGCCCTTTGTTATGGTGTTCTGCTGAGGTTCAAGTTTGAGTAACTCGAAATGTGAATTAGAAAAGCTTTTGTGATATTCACACTGTTATGTGACCTTTGCTATTAGTGGGTTCTAATTTATAACAAAAGTTTCTTCGGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429382" ref_strand="+" ref_description="SGN-E429382 [STM-51-P20]">
      <seq>tacctctcaaaattaagcgtcttgctcaggatcctgagagatttatttgggcaatgagtatagcacaatctcgatgcatcaacttgcaaacgagaattggttcactggttcaagatgcaaatatgttggtaccttatgctgacatgatgaatcattcttttcagccaaattgctttttccattggcgcttcaaggaccgcatgctggaggtgatgataaatgcgggacaaaaaattagaaaaggagaagagatgactgttgattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="18517" stop="21082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18817" g_stop="18957" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18958" i_stop="20666" i_length="1709">
            <donor d_prob="0.681" d_score="0.96"/>
            <acceptor a_prob="0.166" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20667" g_stop="20776" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="251" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E429382" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18817" e_stop="18957"/>
          <exon e_start="20667" e_stop="20776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCTCAAAATTAAGCGTCTTGCTCAGGATCCTGAGAGATTTATTTGGGCAATGAGTATAGCACAATCTCGATGCATCAGCATGCAAACAAGAATTGGTTCACTGGTTCAAGAAGCAAATATGTTGGTACCTTATGCTGGTGAGCTTCTTTATTGTATTTCTGTCCAAAATTTCAATAGTGAAATCGGGAGCTTTAATTAGTTTATTCACACAATGCAGCACCCTACTTTTAACAGATTGAACTTGGCTGAGATATTTTAAGATAGTCTGAATGGCATCCTTTATTTAATTATTGTTTAGATTGGTCTTGAAGTGATGCTCATGTGTACTTTAAGATGTTAAGTGGATCCAAAAGAGCAGATCCATGACTGCAGTAACAAGTTAGTCACTGAAAAATATGTTCAGTGTTCAGTTTACTGAAACCATGCCCCCAATGAGAATATTGTGTATTCAATTTTTTCCATTTTTTAAAAATAGCTGTGCTTTCTCCCTCTGCAGTCTGCATTATGAAACTCGACGCAGTTACTGTTACAGGTGGAAAATATTTGTCCACCCTAATGATATTTAATACTACTTTCATCACATTTTGGTAAGAAATATATGGTTCATAGAGGGTTTTCTTTAGTCTAATATATACTGTTTATTCTAAGAATTGTAATTATTCATATCTGATGTTAGACAGAGTGTATCAAGTAGTCAACCATTGTAAAACTAACCAGGTCATATTTTATGGGACAGAAGGAGTACCTTACAGAAGAGTAAAATCTGTTTTCCAGAGTTCCCACAAAGTTGTCCTATCAAAGAAAACATATCCCCTCAAAAATAAAATATTATATCAGCTTTTGAATTTCTCTCTACCCAAAACATCAGATTTTCGCCCATCCCTCCCTTTGTTTCAGCCTTGTGTGTGTATCTATGTGTCTCATATTAGAAGAGGCAAAATTAAACATTCTCAAATACTAGTCCTGGCAAAATTAAACATTCTCAAAATTAAACACTTCTCTCTGCATTTCCATCTTCCATTTGTTTCCTTGATTCAAATTCATCATTTTGCTATAGAATACAGCTCAATATCAAGATGGAGGTGCAATGACTTCTTATTTTTTGAGATAAGGAAGGTTTTATTGTTTGGCCGAACAAGTTTCATGAAAATACAAAATGGAAATGTAAAAAGTTGGAATTTCTTTTCCTTCTCCTTCTCCTTCAAAAAAGAAGAAAAAATTTGGAACTTTTCTGGATAATTTCTTGAAAACGAGGAGCATTGCAAAATACTGAAGGATGCTGATAACCGGAAGACAATGGTGATTATGAGAGAAAAATTGGTGACTTTGAATATATATTAACAGTTCCTTTGACTTGACATGATGAGAATTATTTGTTAATGGTTTTGCTATTTTTCTTCTTTTTCCATTAATTGCTAGTGAAGGCCTCAATAACTGTTATTCTCATTGCATCTGTGTCTTTCTAGTCCTAAAGTTTGATGTTGACTGGCGATGTGGTGATGCACATTATGCTTTCTTTTGTAAGTCACATATTTTGAAACTTCCACAAAAGTAATCGATGTATTAAAAGTCTATATTAGCTCTACTAATGCCAGTCAACTTTGTAGAGAAGTTCAGAAAACCTGAAAGCTTTTGAACTAGTATTAAAGAACACAACAACAAGACCTAATACTATGCCTTACCAAGCGTATTATTGTGACCTGTGTTTAAGAAAAAAAACTTAAAGACTTATTAGATAGGGATTCTTCATAATTTCAAGGCAGACTTGCTTGCAATTATCTGTAGCATCTTTAACCAAACTTTGTTTGTGAGGAAGTCCTAACATGTAACTCATCTCATTCTCCAGACATGATGAATCATTCTTTTCAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGCATGCTGGAGGTGATGATAAATGCAGGACAAAAAATTAGAAAAGGAGATGAG</genome_strand>
        <mrna_strand>TACCTCTCAAAATTAAGCGTCTTGCTCAGGATCCTGAGAGATTTATTTGGGCAATGAGTATAGCACAATCTCGATGCATCAACTTGCAAACGAGAATTGGTTCACTGGTTCAAGATGCAAATATGTTGGTACCTTATGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGATGAATCATTCTTTTCAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGCATGCTGGAGGTGATGATAAATGCGGGACAAAAAATTAGAAAAGGAGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371820" ref_strand="+" ref_description="SGN-E371820 [TUS-30-G3]">
      <seq>ccggagatgccaaaattcatctagacacctttttatcggtctttaacatatctggcctccctggagaatattaccacaacacaggtaagctatcaaatgatggagacagattcgtcgatggagcaataatagcagccgcaagaacgttgcccacttggtcagatggagatctccctccaattccaagtctagagaggaaagcagtgaaggagctgcaagaagaatgccaccagatgcttgcagaatttcccacaacttctgacgaagaccagaaaatcctagattcgatgcctgaatgcaggagaacattcgaagcagcaataaagtatagattacatcggaaattactgatagagaaggttatacaggccttggacatttaccaagacaggattctgttctaaacatgaataacagcaggagttgaagcaatctttaccagaaatcatgtagccatagaagacgggcgtcaagattatggttccatttcagctatgcagaaagctttatctatcacaatagcttttgcaacattttgagggcttttgttgggggtgggtgtaggaagtagctagtaatggtgtataggtggaaaatgacttataccattagttttggaaagatatgaagtgaagaaaaatgagaagttctctatagaaatcatgatgaaaatgaaggatagctttggtggatatgtttgataacaagtagaaaggctcttttgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="21894" stop="23755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22194" g_stop="22274" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22275" i_stop="22367" i_length="93">
            <donor d_prob="0.282" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22368" g_stop="22568" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="282" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22569" i_stop="22904" i_length="336">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22905" g_stop="22947" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="325" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22948" i_stop="23051" i_length="104">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23052" g_stop="23455" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="729" r_length="404" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E371820" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22194" e_stop="22274"/>
          <exon e_start="22368" e_stop="22568"/>
          <exon e_start="22905" e_stop="22947"/>
          <exon e_start="23052" e_stop="23455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACAGTATGGGTCTTAAAGAATGTTTTTGATATACTAGAGCTCCTTCACTGATCTAGGTTTGCAATTATGTTTAGAATCCTTGTTTAAAACTTGAAGCAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAGGTAAGCCTGGATTGTGTACTTCTATCTAATGATGCATGTTGAAGAAGAAATATAACTCCATCTTCTATGCGCTATGGTTGTCACCTGTATTTCATGCTAAAAAACAATGTGGATTTATGTATATTGAATTCAGAATCCATCAATCCTAGTACTGACTAACATCATAAGTTTTGGCTTTTGCCACGAATTACAAAGCTTGTAGGCGTCATGCTACACATGGGCTGACACTGTTTACCACTTTTTGTTGATTTCATCGGTTGACTTTGTAACATATTTCATTATTCACGTCATAATGCTGTCCAACAATGTATTCGTTTTCCTGGTTTCTGTGAACAGATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAAGTACGTAATGTATGAAGTATTATTCGTCATTGCATGCAGAGATCATCTTATCTTTGCTTCAATGTGAATGCAGATCTTATTTACATAATGCTTTCGTTTGGCAGGTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGA</genome_strand>
        <mrna_strand>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA.............................................................................................CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG................................................................................................................................................................................................................................................................................................................................................ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA........................................................................................................GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAAGGCTCTTTTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283122" ref_strand="+" ref_description="SGN-E283122 [cLER-17-M1]">
      <seq>ccggagatgccaaaattcatctagacacctttttatcggtctttaacatatctggcctccctggagaatattaccacaacacaggtaagctatcaaatgatggagacagattcgtcgatggagcaataatagcagccgcaagaacgttgcccacttggtcagatggagatctccctccaattccaagtctagagaggaaagcagtgaaggagctgcaagaagaatgccaccagatgcttgcagaatttcccacaacttctgacgaagaccagaaaatcctagattcgatgcctgaatgcaggagaacattcgaagcagcaataaagtatagattacatcggaaattactgatagagaaggttatacaggccttggacatttaccaagacaggattctgttctaaacatgaataacagcaggagttgaagcaatctttaccagaaatcatgtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="21894" stop="23480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22194" g_stop="22274" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22275" i_stop="22367" i_length="93">
            <donor d_prob="0.282" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22368" g_stop="22568" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="282" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22569" i_stop="22904" i_length="336">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22905" g_stop="22947" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="325" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22948" i_stop="23051" i_length="104">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23052" g_stop="23180" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="454" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E283122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22194" e_stop="22274"/>
          <exon e_start="22368" e_stop="22568"/>
          <exon e_start="22905" e_stop="22947"/>
          <exon e_start="23052" e_stop="23180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACAGTATGGGTCTTAAAGAATGTTTTTGATATACTAGAGCTCCTTCACTGATCTAGGTTTGCAATTATGTTTAGAATCCTTGTTTAAAACTTGAAGCAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAGGTAAGCCTGGATTGTGTACTTCTATCTAATGATGCATGTTGAAGAAGAAATATAACTCCATCTTCTATGCGCTATGGTTGTCACCTGTATTTCATGCTAAAAAACAATGTGGATTTATGTATATTGAATTCAGAATCCATCAATCCTAGTACTGACTAACATCATAAGTTTTGGCTTTTGCCACGAATTACAAAGCTTGTAGGCGTCATGCTACACATGGGCTGACACTGTTTACCACTTTTTGTTGATTTCATCGGTTGACTTTGTAACATATTTCATTATTCACGTCATAATGCTGTCCAACAATGTATTCGTTTTCCTGGTTTCTGTGAACAGATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAAGTACGTAATGTATGAAGTATTATTCGTCATTGCATGCAGAGATCATCTTATCTTTGCTTCAATGTGAATGCAGATCTTATTTACATAATGCTTTCGTTTGGCAGGTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGC</genome_strand>
        <mrna_strand>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA.............................................................................................CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG................................................................................................................................................................................................................................................................................................................................................ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA........................................................................................................GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371819" ref_strand="+" ref_description="SGN-E371819 [TUS-30-G3](-)">
      <seq>tcatctagacacctttttatcggtctttaacatatctggcctccctggagaatattaccacaacacaggtaagctatcaaatgatggagacagattcgtcgatggagcaataatagcagccgcaagaacgttgcccacttggtcagatggagatctccctccaattccaagtctagagaggaaagcagtgaaggagctgcaagaagaatgccaccagatgcttgcagaatttcccacaacttctgacgaagaccagaaaatcctagattcgatgcctgaatgcaggagaacattcgaagcagcaataaagtatagattacatcggaaattactgatagagaaggttatacaggccttggacatttaccaagacaggattctgttctaaacatgaataacagcaggagttgaagcaatctttaccagaaatcatgtagccatagaagacgggcgtcaagattatggttccatttcagctatgcagaaagctttatctatcacaatagcttttgcaacattttgagggcttttgttgggggtgggtgtaggaagtagctagtaatggtgtataggtggaaaatgacttataccattagttttggaaagatatgaagtgaagaaaaatgagaagttctctatagaaatcatgatgaaaatgaaggatagctttggtggatatgtttgataacaagtagaagggctcttttgcatgaatgaaatatatgaattctctttaaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="21910" stop="23783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22210" g_stop="22274" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22275" i_stop="22367" i_length="93">
            <donor d_prob="0.282" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22368" g_stop="22568" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="266" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22569" i_stop="22904" i_length="336">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22905" g_stop="22947" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="309" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22948" i_stop="23051" i_length="104">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23052" g_stop="23490" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="748" r_length="439" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E371819" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22210" e_stop="22274"/>
          <exon e_start="22368" e_stop="22568"/>
          <exon e_start="22905" e_stop="22947"/>
          <exon e_start="23052" e_stop="23490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACAGTATGGGTCTTAAAGAATGTTTTTGATATACTAGAGCTCCTTCACTGATCTAGGTTTGCAATTATGTTTAGAATCCTTGTTTAAAACTTGAAGCAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAGGTAAGCCTGGATTGTGTACTTCTATCTAATGATGCATGTTGAAGAAGAAATATAACTCCATCTTCTATGCGCTATGGTTGTCACCTGTATTTCATGCTAAAAAACAATGTGGATTTATGTATATTGAATTCAGAATCCATCAATCCTAGTACTGACTAACATCATAAGTTTTGGCTTTTGCCACGAATTACAAAGCTTGTAGGCGTCATGCTACACATGGGCTGACACTGTTTACCACTTTTTGTTGATTTCATCGGTTGACTTTGTAACATATTTCATTATTCACGTCATAATGCTGTCCAACAATGTATTCGTTTTCCTGGTTTCTGTGAACAGATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAAGTACGTAATGTATGAAGTATTATTCGTCATTGCATGCAGAGATCATCTTATCTTTGCTTCAATGTGAATGCAGATCTTATTTACATAATGCTTTCGTTTGGCAGGTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACCAATTCCACT</genome_strand>
        <mrna_strand>TCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA.............................................................................................CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG................................................................................................................................................................................................................................................................................................................................................ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA........................................................................................................GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400046" ref_strand="+" ref_description="SGN-E400046 [cSTC-4-O20]">
      <seq>gtctctcatttatgttgtctttaatcttttgcttgaaattagttctaaagttcaagaatcagcaatcaataatgctatttatgatgttttaaattgttatttgagttccaaattcatggtttggctctttccattatcttgtctttcagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="25776" stop="26519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26076" g_stop="26227" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E400046" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>152</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26076" e_stop="26227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTCATTTATGTTGTTTTTAATCTTTTTCTTGAAATTAGTTCTGAAGTTCAATAATCAGCAATCAAGAATGCTATTTATGATGTTTTAAATTGTTATTTGAGTTCCAAATTCATGGTTTTGCTCTTTCCATTATCTTGTC-TCCAGTTAT</genome_strand>
        <mrna_strand>GTCTCTCATTTATGTTGTCTTTAATCTTTTGCTTGAAATTAGTTCTAAAGTTCAAGAATCAGCAATCAATAATGCTATTTATGATGTTTTAAATTGTTATTTGAGTTCCAAATTCATGGTTTGGCTCTTTCCATTATCTTGTCTTTCAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689329" ref_strand="+" ref_description="SGN-E689329 [t3_tus_84_C14]">
      <seq>cattaaagagtgcatgcctatntngnaaggggtgctcttgccttcaagattgggttcaacatttctccacttctgtggaggaaattacctggttgtcaatctgctggtcgggttcagtctgctgccctatcacttatatgtgacagagaaatggaaattgatggattcaaaccacaggagtattggacagtcctggttgaatttaagaagaacaaaaacctagatttagccaataactttttgtcgtcccatttgacccattttgataccaagaaattaagtcagttctctgttagctctcataccgaagcaatggaaattgaagggaagataaattcatcaaactttgaagttcttagctctaagataaccaaaaagcagagaaacccctctcctccttatataacatcaacacttcagcaagatgccgcaaacaaattggacttttcatcaacatatacgatgaaacttgcacaaaagctatatgagggaatccagttatctgatggcaagtcaacaggattgataacttacatcagaacagatggcttgcacatttcagatgaagctaccaaggacattcaatcctatatcagtgaaaggtatggacagaattttgcatcaaaagaatggtcgcaaatacttcaagaaggtgaagaatgctcaagaggcccatgaagctattagacccactgatatccgaaggttaccctcacagcttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="29121" stop="30401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29379" g_stop="30101" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E689329" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29379" e_stop="30101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAATTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATC-AAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCCACTGATATCCGAAGGTTACCCTCAAAGCTTGT</genome_strand>
        <mrna_strand>CATTAA-AGAGTGCATGCCTATNTNGNAAGGGGTGCTCTTGCCTTCAAGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCCACTGATATCCGAAGGTTACCCTCACAGCTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332539" ref_strand="+" ref_description="SGN-E332539 [cTOD-18-G9]">
      <seq>tttagtgcatgcctatcttgcaaggcgtgctcttgattacctgattgggttcaacatttctccacttctgtggaggaaattacctggttgtcaatctgctggtcgggttcagtctgctgccctatcacttatatgtgacagagaaatggaaattgatggattcaaaccacaggagtattggacagtcctggttgaatttaagaagaacaaaaacctagatttagccaataactttttgtcgtcccatttgacccattttgataccaagaaattaagtcagttctctgttagctctcataccgaagcaatggaaattgaagggaagataaattcatcaaactttgaagttcttagctctaagataaccaaaaagcagagaaacccctctcctccttatataacatcaacacttcagcaagatgccgcaaacaaattggacttttcatcaacatatacgatgaaacttgcacaaaagctatatgagggaatccagttatctgatggcaagtcaacaggattgataacttacatcagaacagatggcttgcacatttcagatgaagctaccaaggacattcaatcctatatcagtgaaaggtatggacagaattttgcatcaaagaatggtcgcaaatacttcaagaaagtgaagaatgctcaagaagcccatgaagctattagaaccactgatatccgaaggttacccctcaagctttgtcgggtgctggatgatgatgcacttaagctatacaaacttatatgggtcccgtacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="29085" stop="30457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29385" g_stop="30157" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="774" r_length="774" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E332539" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29385" e_stop="30157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCCACTGATATCCGAAGGTTACCCTCAAAGCTTGTCGGGGTGCTGGATGATGATGCACTTAAGCTATACAAACTTATAT-GGTCCCGTACCA</genome_strand>
        <mrna_strand>TTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAGAATGGTCGCAAATACTTCAAGAAAGTGAAGAATGCTCAAGAAGCCCATGAAGCTATTAGAACCACTGATATCCGAAGGTTACCCCTCAAGCTTTGTCGGGTGCTGGATGATGATGCACTTAAGCTATACAAACTTATATGGGTCCCGTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419963" ref_strand="+" ref_description="SGN-E419963 [STM-30-B13]">
      <seq>gtgctcttgattacctgattgggttcaacatttctccacttctgtggaggaaattacctggttgtcaatctgctggtcgggttcagtctgctgccttatcacttatatgtgacagagaaatggaaattgatggattcaaaccacaggagtattggacagtcctggttgaatttaagaagaacaaaaacctagatttagccaataactttttgtcatcccacttgacccattttgataccaagaaattaagtcagttctctgttagctctcataccgaagcaatggaaattgaagagaagataaattcatcaaactttgaagttcttagctctaagataaccaaaaagcagagaaacccctctcctccttatataacatcaacacttcagcaagatgccgcaaacaaattggacttttcatcaacatatacgatgaaacttgcacaaaagctctatgagggaatccagttatctgatggcaagtcaacaggattgataacttacatcagaacagatggattgcacatttcagatgaagctaccaaggacattcaatcctatatcagtgaaaggtatggacagaattttgcatcaaagaatggtcgcaaatacttcaagaaggtgaagaatgctcaagaggcccatgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="29111" stop="30359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29411" g_stop="30059" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E419963" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29411" e_stop="30059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGC</genome_strand>
        <mrna_strand>GTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCTTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCATCCCACTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGAGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTCTATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGATTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445400" ref_strand="+" ref_description="SGN-E445400 [cSTA-45-M12]">
      <seq>gtgctcttgattacctgattgggttcaacatttctccacttctgtggaggaaattacctggttgtcaatctgctggtcgggttcagtctgctgccttatcacttatatgtgacagagaaatggaaattgatggattcaaaccacaggagtattggacagtcctggttgaatttaagaagaacaaaaacctagatttagccaataactttttgtcatcccacttgacccattttgataccaagaaattaagtcagttctctgttagctctcataccgaagcaatggaaattgaagagaagataaattcatcaaactttgaagttcttagctctaagataaccaaaaagcagagaaacccctctcctccttatataacatcaacacttcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="29111" stop="30100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29411" g_stop="29800" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E445400" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29411" e_stop="29800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGC</genome_strand>
        <mrna_strand>GTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCTTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCATCCCACTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGAGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584748" ref_strand="+" ref_description="SGN-E584748 [10575]">
      <seq>gcttatatgtgacagagaaatggaaattgatggattcaaaccacaggagtattggacagtcctggttgaatttaagaagaacaaaaacctagatttagccaataactttttgtcatcccacttgacccattttgataccaagaaattaagtcagttctctgttagctctcataccgaagcaatggaaattgaagagaagataaattcatcaaactttgaagttcttagctctaagataaccaaaaagcagagaaacccctctcctccttatataacatcaacacttcagcaagatgccgcaaacaaattggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="29212" stop="30124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29511" g_stop="29824" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E584748" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29511" e_stop="29824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACT</genome_strand>
        <mrna_strand>GCTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCATCCCACTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGAGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479551" ref_strand="+" ref_description="SGN-E479551 [cSTD-10-K14]">
      <seq>gcatgccagatggaacctgctaccatcgagcagatacaagttgatattgggaaacctgaccaatccataatcttccgttcatcaagctcaaaagtacagtttcccgggtaccaagctgtctacgaggatgtagaaactaactcaacgagagataatgagaatgggagggatgatcgttctgaagtatttgaggctcttaggaatttaaccgctggggatccaatttatttgggtaaagtgaaacttgagcaacaccagactcagcctccaccacgatactctgaggggtctttggtcaaaaagctggaggagctcggcattggaagaccttctacttatgcagccacaataaaagtgttaaaggacaggaattatgtcattgccaaaggcagaacactgtatcctgaatttcgtgggcgtatggtatcggcatttctctctcattactttactgaagtaacagattatagcttcactgccgatatggagacggaacttgataatgtctctgctggtttgactgaatggaagggccttttgagagattactggactagatttagcaagtattgtgaacatactggtaatgtgcacattcatcaggtggagaagatgttggagaaaacatttggtgattttctggttgcatctcttcctaatgaaagcaggacatgcccaagctgtcttcagggaactttaatcttcaagtgagccagtttggtgcaggctactttataggttgtgaccaacacccaaaatgcaagtatattgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="29860" stop="31230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30160" g_stop="30923" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E479551" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30160" e_stop="30923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCCAGATGGAACCTGCTACCATAGAGCAGATACAAGTTGATATTGGGAAATCTGACCAATCCATAATCTTCCGTTCATCAAGCTCAAAAGTACAGTTTCCCGGGTACCAAGCTGCCTACGAGGATGTAGAAACTAACTCAACAAGAGATAATGAGAATGGGAGGGATGATCATTCTGAAGTATTTGAGGCTCTTAGGAATTTAACCGCTGGGGATCCAATGTATTTGGGTAAAGTGAAACTTGAGCAACACCAGACTCAGCCTCCACCACGATACTCTGAGGGGTCTTTGGTCAAAAAGCTAGAGGAGCTCGGCATTGGAAGACCTTCTACTTATGCAGCCACAATAAAAGTGTTAAAGGACAGGAATTATGTCATTGCCAAAGGCAGAACACTGCATCCTGAATTTCGTGGGCGTATGGTATCAGCATTTCTCTCTCATTACTTTACTGAAGTAACAGATTATAGCTTCACTGCTGATATGGAGACGGAACTTGATAATGTCTCTGCTGGTTTGACTGAATGGAAGGGCCTTTTGAGAGATTACTGGACTAGATTTAGCAAGTATTGTGAACATACTGGTAATGTGCACATTCATCAGGTGGAGAAGATGTTGGAGAAAACTTTTGGTGATTTTCTGTTTGCATCTCTTCCTAATGAAAGTAGGACATGCCCAAGCTGTCTTCAGGGAACTTTAATCTTCAAAGTGAGCAGGTTTGGTGCAGGCTACTTTATAGGTTGTGACCAACACCCAAAATGCAA</genome_strand>
        <mrna_strand>GCATGCCAGATGGAACCTGCTACCATCGAGCAGATACAAGTTGATATTGGGAAACCTGACCAATCCATAATCTTCCGTTCATCAAGCTCAAAAGTACAGTTTCCCGGGTACCAAGCTGTCTACGAGGATGTAGAAACTAACTCAACGAGAGATAATGAGAATGGGAGGGATGATCGTTCTGAAGTATTTGAGGCTCTTAGGAATTTAACCGCTGGGGATCCAATTTATTTGGGTAAAGTGAAACTTGAGCAACACCAGACTCAGCCTCCACCACGATACTCTGAGGGGTCTTTGGTCAAAAAGCTGGAGGAGCTCGGCATTGGAAGACCTTCTACTTATGCAGCCACAATAAAAGTGTTAAAGGACAGGAATTATGTCATTGCCAAAGGCAGAACACTGTATCCTGAATTTCGTGGGCGTATGGTATCGGCATTTCTCTCTCATTACTTTACTGAAGTAACAGATTATAGCTTCACTGCCGATATGGAGACGGAACTTGATAATGTCTCTGCTGGTTTGACTGAATGGAAGGGCCTTTTGAGAGATTACTGGACTAGATTTAGCAAGTATTGTGAACATACTGGTAATGTGCACATTCATCAGGTGGAGAAGATGTTGGAGAAAACATTTGGTGATTTTCTGGTTGCATCTCTTCCTAATGAAAGCAGGACATGCCCAAGCTGTCTTCAGGGAACTTTAATCTTC-AAGTGAGCCAGTTTGGTGCAGGCTACTTTATAGGTTGTGACCAACACCCAAAATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428309" ref_strand="+" ref_description="SGN-E428309 [STM-50-I11]">
      <seq>gcatgccagatggaacctgctaccatcgagcagatacaagttgatattgggaaacctgaccaatccataatcttccgttcatcaagctcaaaagtacagtttcccgggtaccaagctgtctacgaggatgtagaaactaactcaacgagagataatgagaatgggagggatgatcgttctgaagtatttgaggctcttaggaatttaaccgctggggatccaatttatttgggtaaagtgaaacttgagcaacaccagactcagcctccaccacgatactctgaggggtctttggtcaaaaagctggaggagctcggcattggaagaccttctacttatgcagccacaataaaagtgttaaaggacaggaattatgtcattgccaaaggcagaacactgtatcctgaatttcgtgggcgtatggtatcggcatttctctctcattactttactgaagtaacagattatagcttcactgccgatatggagaccgaacttgataatgtctctgctggtttgactgaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="29860" stop="30987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30160" g_stop="30687" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E428309" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E428309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30160" e_stop="30687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGCCAGATGGAACCTGCTACCATAGAGCAGATACAAGTTGATATTGGGAAATCTGACCAATCCATAATCTTCCGTTCATCAAGCTCAAAAGTACAGTTTCCCGGGTACCAAGCTGCCTACGAGGATGTAGAAACTAACTCAACAAGAGATAATGAGAATGGGAGGGATGATCATTCTGAAGTATTTGAGGCTCTTAGGAATTTAACCGCTGGGGATCCAATGTATTTGGGTAAAGTGAAACTTGAGCAACACCAGACTCAGCCTCCACCACGATACTCTGAGGGGTCTTTGGTCAAAAAGCTAGAGGAGCTCGGCATTGGAAGACCTTCTACTTATGCAGCCACAATAAAAGTGTTAAAGGACAGGAATTATGTCATTGCCAAAGGCAGAACACTGCATCCTGAATTTCGTGGGCGTATGGTATCAGCATTTCTCTCTCATTACTTTACTGAAGTAACAGATTATAGCTTCACTGCTGATATGGAGACGGAACTTGATAATGTCTCTGCTGGTTTGACTGAATGG</genome_strand>
        <mrna_strand>GCATGCCAGATGGAACCTGCTACCATCGAGCAGATACAAGTTGATATTGGGAAACCTGACCAATCCATAATCTTCCGTTCATCAAGCTCAAAAGTACAGTTTCCCGGGTACCAAGCTGTCTACGAGGATGTAGAAACTAACTCAACGAGAGATAATGAGAATGGGAGGGATGATCGTTCTGAAGTATTTGAGGCTCTTAGGAATTTAACCGCTGGGGATCCAATTTATTTGGGTAAAGTGAAACTTGAGCAACACCAGACTCAGCCTCCACCACGATACTCTGAGGGGTCTTTGGTCAAAAAGCTGGAGGAGCTCGGCATTGGAAGACCTTCTACTTATGCAGCCACAATAAAAGTGTTAAAGGACAGGAATTATGTCATTGCCAAAGGCAGAACACTGTATCCTGAATTTCGTGGGCGTATGGTATCGGCATTTCTCTCTCATTACTTTACTGAAGTAACAGATTATAGCTTCACTGCCGATATGGAGACCGAACTTGATAATGTCTCTGCTGGTTTGACTGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551750" ref_strand="+" ref_description="SGN-E551750 [cTSB-1-L20]">
      <seq>attgccaagacattatatggtgaagaggatgaagatatctcctctgaagacactaaaagaagtgtggaaccgccaaaattgctgggtgtccatccttcttcaaatgagaagattcttatgaataatggaccatatggatactatgttcagcttggagaagacaagaaaggatacgttcccaagcgggcttcgctttcacaggtgaaggatgtcaattctgttaccttggaagatgccctggagttgcttcgttaccctgtaacattgggaaaccaccccgatgatggccagccggtcgttttaaagcttgcaaagttcggatttacaatcagacataggcgaacaattgctccagtacccaagaatttaaaacccaaagacataaccatggaaaaagctttgaagcttttgctaagtaaagatgtaaggcgatgtggtcgacctaagcgccagccacaggtggaagaggccattgaggcaacataacatcacacttgttagcagattaatgtaccatagaagtcattctttgatgaaggccctcctcaggctgttttattttataggaggaatagtggaatacgaagcttatttacccccacacgggcttggatactctacaagtatgaagagttgtatatcttgagtggcaaagacgattttgttagtagaaattccatttctgtaatctcttcttacaatctttgttatagcattaggcaataacttggccatccaaatggtctgtttaattctcctttttttctgccttgctaagatgtaaagagagtgaaagcattttctttggcagttaaacgcttcaatttgctgaatacatccttttttattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="32604" stop="37148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32904" g_stop="33014" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33015" i_stop="33128" i_length="114">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.859" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33129" g_stop="33218" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="201" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33219" i_stop="34646" i_length="1428">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34647" g_stop="34712" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="267" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34713" i_stop="34828" i_length="116">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34829" g_stop="34924" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="363" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34925" i_stop="36359" i_length="1435">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36360" g_stop="36848" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="852" r_length="489" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E551750" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32904" e_stop="33014"/>
          <exon e_start="33129" e_stop="33218"/>
          <exon e_start="34647" e_stop="34712"/>
          <exon e_start="34829" e_stop="34924"/>
          <exon e_start="36360" e_stop="36848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCCAAGACATTATATGGTGAAGAGGATGAAGATATCTCCTCTGAAGACACTAAAAGAAGTGTAGAACCGCCAAAATTGCTGGGTGTCCATCCTTCTTCAAATGAGAAGGTTTCCACATCAAAACCCTTTATATATCAGTTGATTGATTTTACTAGTTGTTTGTTACCTATTAATTAGTTGTTTGTTCTCGGAGTTAAACACCTTTATGCCCTTTCTCTTTAGATTCTTATGAAGAATGGTCCATATGGATACTATGTTCAGCTTGGAGAAGACAAGAAAGGATACGTTCCCAAGCGGGCTTCGCTTTCACAGGTATTTTGATAAGCACTTTCTTGAACATGGTAGTGAGTTCTTTCCCATGTATAAATACCAGTTTCCGCTTTTATATTATTGCTAGTATATGGGCACGTGCGTTGCACGTTTACTTCATAACGATGAATAACATGATAAACGATTTAAGTTTTAAAAAAATGTTTGTAGTGTATAGTTAACTTGAAGAATTTTTTTTTGTATTTATGTCCTCCCTTTATTATATAATTTTGATATAGAAATTTTATATTTGTTTTAAAAGACAAAATAAAGTAGCAAAAACAAACATGTAGGCACACTATCTTATGATGAATTTTCTTAAAATGTCTTTTTTTTCTCATAAAAATGTTGAAATTAAATTAATAGTTGTACATTTCAAGAAGATAAAATGTTTGACATTAATTAGTAAAAGATGAAATTCTCCTTCTCTTTAAGTAGAATACAATTAAGTAATTCAAATTTATAAATAAAAAACTTATTAGAAGAAAATAATTAAGATTTTAAGTGCAATGATTGGTATTTAAATTATGTAATTATACAAATAAAATATTAATATTTAATTAAATAAATCAGATTTTAATTTAATGGAGAGCCAAAATGACAATATCAGTATTCTTACAATTAAAAGTTAAAATATATGTTACGTTTTTTTGTTAAAAAATTAATAGGAGCAATATTTGGTCAAAGGATAAAAGATCTTCTAACTTCTTAAGCATTTTGGTGTATCATTTTTTTGATTTTGGGATTTGGATCTCATGATAATTTTAATGAAAATTGTCTAAAAACTATATATTCTATTCACAAGCACATGTAAGAATGATTCTTTACAAATATTTAAAATTTTGCAAAAATGTAATTATTAATAATTTGAAATTAGAATATCTTGTAGGCATTAACTGTTTTGCATGCCTTTTACACTATTTTTATGATTGTATTTGTCTCATTTTATAAAGCAAAAAATACACATATATCTATTTAAAGGGTAAATAATTTCAAGAAAATAAATTAAATTAGATATTTTAATTAAGAATTATTCTAAAGAAGTGCATAAGTCATTAACATTTTTATTAAAATAATATAACTTAATATTTAAATTAAATAGTAAATATTTTTATAACATTTTAATTTATAATAAGGGTAAAACCGTAATTTAACTTTTAATTTTTTTGGTTCCCTCTTATAATAATAATATATGATATATGATATATGATAATAAAAAAAATACTGCAATTCCTCCAAAGTCACTGAGCGGAGCCTTCTCTTTCCCATTGAACGGAATTACCTTTTGCTTTTGTTTGATTTGATATAATTGCGCCTGGAGTATAATCTTTACAAATCACTATACTTAATGCCCTCCTCAAAGAAAAGTTCAATGAGATAAGTTTATCTTGGTAGATCGTAAGTGATGTAAATGCATTTTTCATGATCTAGGTGAAGGATGTCAATTCTGTTACCTTGGAAGATGCCCTGGAGTTGCTTCGTTACCCTGTAACATTGGTATGTTTGCAATGTGTACTTCCTTTTGTGTATTTAATATTTCTATCATCAGTTTTAAATATCTCTATCACTGGTTATGAGTATGCATACAAAAGATGAATGGGTCATGTCTATAGGGAAACCACCCCGATGATGGCCAGCCGGTCGTTTTAAAGCTTGCAAAGTTCGGATTTACAATCAGACATAGGCGAACAATTGCTCCAGTACCCAAGGTTTGGTGCAATCTCTCTGTGCTAAAATTGTTGTTTATTTTTTCCAAATATTTTGTCTTGATATGCTAGCTTCTGCTGAATAATATTAGAAGGTATTTATACGAGAAAATTATCTTGGAATCAATAAAGATCTGATAAAAAGTTATGACATAATGACAGCAGGACATAGGCTCCTGCAGTCTTGATGGATGATAAAGTGAAGTTTGTGGTTGTCAAATTTCCAAAGTGTTCAAATTGTCCCTTTACTCTTGGTGTGTGGTTTGGCATCCTGTTTGTGCCTTTGTGGTTGTATAAATTAATGATGCAGGAGACTGAAGCAGGAAAAAACATCTATCAAGGATGAATACTCTAGTGTTATCTCCCAATTCATGTTAAAAGACTTCTAGACTTTGTGCTTTAATCTAGTGAGAAGTAATAGAGTTTGTAAAAGTGTCTCTGTAATGCCTAGAATTCCAGTATCATTTGTTTCTTACATCAGATACTTTGTGCTTAATCATTTTTTAATGACGGTGGTGTCTGGGCAGCCACACAAACTGCTGGGAATGATGGGAAGAAATCACTTTGTGTTTTGGCCTTCACCGAGATTTGAACCTGAGATCTCATGGTTCTCCCACTAGGCGACACACTTAGTGCTTTGTGCTTAATATTTTTAGGGACCACAATCAATTGTTCATAATTGTCTATTGGGAATAGTTGCAAATGTAAAGACTCGTTCAAGCATTTATTAGTATGACTTCATATTCCTGTATATCAGCCTAATGCCAATGGCTGATGAGCCTCTGCCCTCTCATATTCCACACGTCCTGCCTCCGCAAAATTGAAGACCTTAAGAACTTTATATCATTGTAATTTGTATGACCTCACGATATCCACTGCTTGATACCACATTATATTTGGTTAATTTGTTTTTGTTAGAACAAAACGCGCCTAACTGAAGAGACAGCATATTTTGCTATGCTTTCTGCTAGTATCTTTCTTTAGATTTTTCGAATTTGTCATTTCTCATCAATAATTTTACTGAAAGGAAATTCATCTTAAGGTTCAATTTTATATATTTTTATTCTGTTACATTGAGATGAAGCTGCTACTGTTGCTGCTTGCTAATTACAAATGTTTCTGCAACTACTGTTAACTCTATACCAATGAATGTCAATGCTGGTCAGTATGCTTTCTTACATGTTAGTTATTGCTTATTATTGATACAATACAATAGATGTTACGTGAAGTGTCAATTTGCGAATAATTTAAAAGTGAATAAGGTCTGTATAAATCTCAACTAGATCAATGCTTTGAAGTAGATTAATGGTTATGGGTTTCTGTTTATTTCTTTTTACCATGTGAAGTTCTTGGTGCTGGGATAGCTGATAGATTTTGGTATTTGCTGATAGAAATTGTAAATGGAAATTAATATTGCCTATACTGATTTTGGTGACAGAATTTAAAACCCAAAGACATAACCATGGAAAAAGCTTTGAAGCTTTTGCTAAGTAAAGATGTAAGGCGATGTGGTCGACCTAAGCGCCAGCCACAGGTGGAAGAGGCCATTGAGGCAACATAACATCACACTTGTTAGCAGATTAATGTACCATAGAAGTCATTCTTTGATGAAGGCCCTCCTCAGGCTGTTTTATTTTATAGGAGGAATAGTGGAATACGAAGCTTATTTACCCCCACACGGGCTTGGATACTCTACAAGTATGAAGAGTTGTATATCTTGAGTGGCAAAGACGATTTTGTTAGTAGAAATTCCATTTCTGTAATCTCTTCTTACAATCTTTGTTATAGCATTAGGCAATAACTTGGCCATCCAAATGGTCTGTTTAATTCTCCTTTTTTTCTGCCTTGCTAAGATGTAAAGAGAGTGAAGGCATTTTCATTGGCAGTTAAACGCTTCAATTTGCTGAATACATCCTTTTTTATTATC</genome_strand>
        <mrna_strand>ATTGCCAAGACATTATATGGTGAAGAGGATGAAGATATCTCCTCTGAAGACACTAAAAGAAGTGTGGAACCGCCAAAATTGCTGGGTGTCCATCCTTCTTCAAATGAGAAG..................................................................................................................ATTCTTATGAATAATGGACCATATGGATACTATGTTCAGCTTGGAGAAGACAAGAAAGGATACGTTCCCAAGCGGGCTTCGCTTTCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGATGTCAATTCTGTTACCTTGGAAGATGCCCTGGAGTTGCTTCGTTACCCTGTAACATTG....................................................................................................................GGAAACCACCCCGATGATGGCCAGCCGGTCGTTTTAAAGCTTGCAAAGTTCGGATTTACAATCAGACATAGGCGAACAATTGCTCCAGTACCCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTAAAACCCAAAGACATAACCATGGAAAAAGCTTTGAAGCTTTTGCTAAGTAAAGATGTAAGGCGATGTGGTCGACCTAAGCGCCAGCCACAGGTGGAAGAGGCCATTGAGGCAACATAACATCACACTTGTTAGCAGATTAATGTACCATAGAAGTCATTCTTTGATGAAGGCCCTCCTCAGGCTGTTTTATTTTATAGGAGGAATAGTGGAATACGAAGCTTATTTACCCCCACACGGGCTTGGATACTCTACAAGTATGAAGAGTTGTATATCTTGAGTGGCAAAGACGATTTTGTTAGTAGAAATTCCATTTCTGTAATCTCTTCTTACAATCTTTGTTATAGCATTAGGCAATAACTTGGCCATCCAAATGGTCTGTTTAATTCTCCTTTTTTTCTGCCTTGCTAAGATGTAAAGAGAGTGAAAGCATTTTCTTTGGCAGTTAAACGCTTCAATTTGCTGAATACATCCTTTTTTATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622292" ref_strand="+" ref_description="SGN-E622292 [72657]">
      <seq>ccctcctcaggctgttttttataggaggaatagtggaatacgaagcttatttaccgtacacgggcttggatactgtccaagtatgaagagttgtatatcttgagtggcaaagacaattttgttagtagaaattccatttctgtaatctcttcttacaatctttgttatagcattaggcaataacttggccatccaaatggtctgtttaattctcctttttttctgccttgctaagatgtaaagagagtgaaggcattttcattggcagttaaaagcctcaatttgctgaacagtgacatccttttagtgtctaaatgagagctttcatatatttgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="36250" stop="37181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36536" g_stop="36883" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E622292" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36536" e_stop="36883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCCTCAGGCTGTTTTATTTTATAGGAGGAATAGTGGAATACGAAGCTTATTTACCCCCACACGGGCTTGGATACTCTACAAGTATGAAGAGTTGTATATCTTGAGTGGCAAAGACGATTTTGTTAGTAGAAATTCCATTTCTGTAATCTCTTCTTACAATCTTTGTTATAGCATTAGGCAATAACTTGGCCATCCAAATGGTCTGTTTAATTCTCCTTTTTTTCTGCCTTGCTAAGATGTAAAGAGAGTGAAGGCATTTTCATTGGCAGTTAAACGCTTCAATTTGCTGAATA-CATCCT-TTTTTATTATCTAAATGAGAGCTTTCA-ATATTTGCTTAACAACAGT</genome_strand>
        <mrna_strand>CCCTCCTCAGGCTG--TT-TTTTATAGGAGGAATAGTGGAATACGAAGCTTATTTA-CCGTACACGGGCTTGGATACTGTCCAAGTATGAAGAGTTGTATATCTTGAGTGGCAAAGACAATTTTGTTAGTAGAAATTCCATTTCTGTAATCTCTTCTTACAATCTTTGTTATAGCATTAGGCAATAACTTGGCCATCCAAATGGTCTGTTTAATTCTCCTTTTTTTCTGCCTTGCTAAGATGTAAAGAGAGTGAAGGCATTTTCATTGGCAGTTAAAAGCCTCAATTTGCTGAACAGTGACATCCTTTTAGTGTCTAAATGAGAGCTTTCATATATTTGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323850" ref_strand="+" ref_description="SGN-E323850 [cTOC-5-L21]">
      <seq>tttgatgcttgtcaatccaaatatggttcccattataaaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44897" stop="47266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45197" g_stop="45393" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="347" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="46966" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="412" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E323850" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45197" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="46966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGCTTCTCAATCCAAATATGGTTCCCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGAT</genome_strand>
        <mrna_strand>TTTGATGCTTGTCAATCCAAATATGGTTCCCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271239" ref_strand="+" ref_description="SGN-E271239 [cLEM-5-K8]">
      <seq>ctcaatcctaatatggttcccattatgaaaatttttgggaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataagagcgccagcagcagctcaagttaaatcaatctttgtatatccaattaaatcatgccgcggaatttctgtttctaaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44907" stop="46716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45207" g_stop="45393" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46416" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="282" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E271239" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45207" e_stop="45393"/>
          <exon e_start="46322" e_stop="46416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATCCAAATATGGTTCCCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCA</genome_strand>
        <mrna_strand>CTCAATCCTAATATGGTTCCCATTATGAAAATTTTTGGGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAAGAGCGCCAGCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGCGGAATTTCTGTTTCTAAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725461" ref_strand="+" ref_description="SGN-E725461 [LA03CB11]">
      <seq>ggttcccattataaaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcgctctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44921" stop="47340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45221" g_stop="45393" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="323" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47040" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="462" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E725461" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45221" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCCCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACA</genome_strand>
        <mrna_strand>GGTTCCCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGCTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345380" ref_strand="+" ref_description="SGN-E345380 [cTOF-13-G6]">
      <seq>ccattataaaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaagagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44926" stop="48045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45226" g_stop="45393" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="318" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="495" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="584" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="648" r_length="64" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47745" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="687" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E345380" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45226" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTT</genome_strand>
        <mrna_strand>CCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAA-GAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342863" ref_strand="+" ref_description="SGN-E342863 [cTOF-7-L8]">
      <seq>ccattataaaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctntagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44926" stop="47858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45226" g_stop="45393" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="318" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="495" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="584" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47558" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="620" r_length="36" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E342863" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45226" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGC</genome_strand>
        <mrna_strand>CCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTNTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTC-AGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310005" ref_strand="+" ref_description="SGN-E310005 [cTOA-4-G19]">
      <seq>ccattataaaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatgcaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44926" stop="47342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45226" g_stop="45393" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="318" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47042" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="459" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E310005" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45226" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATC</genome_strand>
        <mrna_strand>CCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATGCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328754" ref_strand="+" ref_description="SGN-E328754 [cTOC-23-N11]">
      <seq>cattataaaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccaaatcaataagttaacatttgagggtgtcaaactatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44927" stop="48097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45227" g_stop="45393" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="317" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="494" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="583" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="648" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47797" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="739" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E328754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45227" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGC</genome_strand>
        <mrna_strand>CATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270334" ref_strand="+" ref_description="SGN-E270334 [cLEM-1-E19]">
      <seq>aggaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44935" stop="47227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45232" g_stop="45393" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="312" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="46927" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="338" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E270334" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45232" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="46927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCA</genome_strand>
        <mrna_strand>AGGAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746779" ref_strand="+" ref_description="SGN-E746779 [GI|47104503]">
      <seq>aaaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccaaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacaacagtagcaggctctgagccaacagaaactctcttgaaattccgatccgataaggccttgcgtccgaataagaaacaacaagggaaggtatattttggacagaacatggtttgttccgacgctcttagccatggaaaaggcaagatagtcaaggttggggatcctgtttatgtccataaggttgttccttctagtgctgaggctccagcttgaactctagttgttctatcactgtaatgtaaaatgtgcatctgaataaggtgatcccaaaagataagaatactaatgtaaggaaaaatggtcttccaggccaatgctaaataaatctacataaacgtttcgcctgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44933" stop="48999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45233" g_stop="45393" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="311" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="488" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="577" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="642" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="745" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48238" g_stop="48348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="856" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48439" g_stop="48696" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="1114" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1116" polyA_stop="1132"/>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E746779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1114</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45233" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48348"/>
          <exon e_start="48439" e_stop="48696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCT</genome_strand>
        <mrna_strand>AAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG..........................................................................................GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727338" ref_strand="+" ref_description="SGN-E727338 [LA14BF11]">
      <seq>aataattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccaaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacaacagtagcaggctctgagccaacagaaactctcttgaaattccgatccgataaggccttgcgtccgaataagaaacaacaagggaaagtatattttggacagaacatggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44934" stop="48764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45233" g_stop="45393" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="311" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="488" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="577" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="642" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="745" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48238" g_stop="48348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="856" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48439" g_stop="48464" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="857" r_stop="882" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E727338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45233" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48348"/>
          <exon e_start="48439" e_stop="48464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACATGGTTTG</genome_strand>
        <mrna_strand>AATAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAA..........................................................................................GTATATTTTGGACAGAACATGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723048" ref_strand="+" ref_description="SGN-E723048 [FC19AG07]">
      <seq>aaaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44933" stop="48051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45233" g_stop="45393" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="311" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="488" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="577" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="642" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47751" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="687" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E723048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45233" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAA</genome_strand>
        <mrna_strand>AAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291366" ref_strand="+" ref_description="SGN-E291366 [cLET-2-L11]">
      <seq>aaaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44933" stop="47297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45233" g_stop="45393" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="311" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="46997" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="407" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E291366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45233" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="46997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTG</genome_strand>
        <mrna_strand>AAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200809" ref_strand="+" ref_description="SGN-E200809 [cLEC-9-J13]">
      <seq>aaaattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44934" stop="47255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45234" g_stop="45393" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="310" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="46955" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="364" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E200809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45234" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="46955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTG</genome_strand>
        <mrna_strand>AAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337732" ref_strand="+" ref_description="SGN-E337732 [cTOE-17-L22]">
      <seq>aattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44936" stop="47849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45236" g_stop="45393" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="308" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="485" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="574" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47549" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="602" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E337732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45236" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTC</genome_strand>
        <mrna_strand>AATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390655" ref_strand="+" ref_description="SGN-E390655 [TUS-47-O16]">
      <seq>aattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44936" stop="47734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45236" g_stop="45393" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="308" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="485" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47434" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="570" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E390655" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45236" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATC</genome_strand>
        <mrna_strand>AATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390775" ref_strand="+" ref_description="SGN-E390775 [TUS-47-O15]">
      <seq>aattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaagatacaatgttatgttttctgatggatatccatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44936" stop="47725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45236" g_stop="45393" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="308" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="485" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47425" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="561" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E390775" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45236" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCT</genome_strand>
        <mrna_strand>AATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAAGATACAATGTTATGTTTTCTGATGGATATCCATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284851" ref_strand="+" ref_description="SGN-E284851 [cLER-19-G24]">
      <seq>aattttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44936" stop="47384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45236" g_stop="45393" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="308" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="485" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47359" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="495" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E284851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45236" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAAT</genome_strand>
        <mrna_strand>AATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286993" ref_strand="+" ref_description="SGN-E286993 [cLES-6-K22]">
      <seq>attttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44937" stop="48038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45237" g_stop="45393" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="307" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="484" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="573" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="638" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47738" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="670" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E286993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45237" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTG</genome_strand>
        <mrna_strand>ATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288435" ref_strand="+" ref_description="SGN-E288435 [cLES-16-F20]">
      <seq>attttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaagatacaatgttatgttttctgatggatatccatacctcatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44937" stop="47733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45237" g_stop="45393" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="307" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="484" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47433" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="568" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E288435" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45237" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTAT</genome_strand>
        <mrna_strand>ATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAAGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286687" ref_strand="+" ref_description="SGN-E286687 [cLES-14-K15]">
      <seq>attttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44937" stop="47356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45237" g_stop="45393" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="307" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47056" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="462" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E286687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45237" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGT</genome_strand>
        <mrna_strand>ATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293817" ref_strand="+" ref_description="SGN-E293817 [cLET-37-K22]">
      <seq>attttttagaaaaaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44937" stop="45700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45237" g_stop="45393" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E293817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45237" e_stop="45393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG</genome_strand>
        <mrna_strand>ATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264721" ref_strand="+" ref_description="SGN-E264721 [cLEG-72-H8]">
      <seq>aaagaagaacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccgggatggatccactgaaaattcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44949" stop="47239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45249" g_stop="45393" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="295" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="46939" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="333" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E264721" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45249" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="46939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCA</genome_strand>
        <mrna_strand>AAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGGATGGATCCACTGAAAATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363915" ref_strand="+" ref_description="SGN-E363915 [cLPT-10-L24]">
      <seq>aacgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaatcaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcagagctcccggtatggatccactgaaaattccactaagtgacccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44956" stop="47253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45256" g_stop="45393" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="288" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="46953" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="340" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E363915" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45256" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="46953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATC</genome_strand>
        <mrna_strand>AACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698250" ref_strand="+" ref_description="SGN-E698250 [FA05CH08]">
      <seq>cgaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttcccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccaaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacaacagtagcaggctctgagccaacagaaactctcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44958" stop="48598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45258" g_stop="45393" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="286" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="463" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="552" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="618" r_length="66" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="721" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48238" g_stop="48298" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="782" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E698250" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45258" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTT-CCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGA</genome_strand>
        <mrna_strand>CGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255005" ref_strand="+" ref_description="SGN-E255005 [cLEG-33-P18]">
      <seq>gaatcttcaactcccatagagtgatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttcttgccctttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44959" stop="47716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45259" g_stop="45393" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="285" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="465" r_length="180" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47416" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="532" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E255005" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45259" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTC-TG-CC-TTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATA</genome_strand>
        <mrna_strand>GAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTTGCCCTTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451736" ref_strand="+" ref_description="SGN-E451736 [cSTS-14-G7]">
      <seq>cagataccgagagtgatggcagaagtcataggagcgccagcagctcaagttaaatcaatctttgtatatcccatcaaatcatgccgtggaatttctgtttctcaagcacctatctcttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctagggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagggttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcgttgaatgcgttaaattctcttctcaaggaacctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44976" stop="48036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45266" g_stop="45393" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="274" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="451" r_length="177" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.804" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="540" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="605" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47736" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="635" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E451736" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45266" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGC</genome_strand>
        <mrna_strand>CAGATACC-GAGAGTGATGGCAGAAGTCATAGGAGCGC---CAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCTCTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTAGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGGGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCGTTGAATGCGTTAAATTCTCTTCTCAAGGAACCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454433" ref_strand="+" ref_description="SGN-E454433 [cSTS-23-E16]">
      <seq>atacagagagtgatggcagaagtcataggagcaccagcagctcaagttaaatcaatctttgtatatcccatcaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgattcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcattgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccggatcaataagttgacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacagcagtagcaggctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44973" stop="48577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45270" g_stop="45393" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="271" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="448" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="537" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="602" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="705" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48238" g_stop="48277" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="745" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E454433" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45270" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTG</genome_strand>
        <mrna_strand>ATACAGAGAGTGATGGCAGAAGTCATAGGA--G-CACCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGATTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCATTGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCGGATCAATAAGTTGACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAGCAGTAGCAGGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484896" ref_strand="+" ref_description="SGN-E484896 [cSTE-15-B18]">
      <seq>gagtgatggcagaagtcataggagcaccagcagctcaagttaaatcaatctttgtatatcccatcaaatcatgccgtggaatttctgtttctcaagcacccatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagggttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcgttgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatagatgtgaaccgtttgctgaggatttgtggaaggagatccagatcaataagttgacatttgagggtgtcaaactatgctctcgctggtaggtacctaccataaatcaagaaacagcagtagcaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44977" stop="48573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45277" g_stop="45393" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="264" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="441" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="530" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="595" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="698" r_length="103" r_score="0.942"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48238" g_stop="48273" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="734" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E484896" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45277" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGC</genome_strand>
        <mrna_strand>GAGTGATGGCAGAAGTCATAGGA--G-CACCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCCATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGGGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCGTTGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATAGATGTGAACCGTTTGCTGAGGATTTGTGGAAGGAGATCCAGATCAATAAGTTGACATTTGAGGGTGTCAAACTATGCTCTCGCTGGTAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAGCAGTAGCAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484138" ref_strand="+" ref_description="SGN-E484138 [cSTE-12-O13]">
      <seq>gagtgatggcagaagtcataggagcaccagcagctcaagttaaatcaatctttgtatatcccatcaaatcatgccgtggaatttctgtttctcaagcacccatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagggttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcgttgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatagatgtgaaccgtttgctgaggatttgtggaaggagatccagatcaataagttgacatttgagggtgtcaaactatgctctcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44977" stop="48104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45277" g_stop="45393" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="264" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="441" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="530" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="595" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47804" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="693" r_length="98" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E484138" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45277" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCT</genome_strand>
        <mrna_strand>GAGTGATGGCAGAAGTCATAGGA--G-CACCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCCATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGGGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCGTTGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATAGATGTGAACCGTTTGCTGAGGATTTGTGGAAGGAGATCCAGATCAATAAGTTGACATTTGAGGGTGTCAAACTATGCTCTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453101" ref_strand="+" ref_description="SGN-E453101 [cSTS-18-J22]">
      <seq>gagtgatggcagaagtcataggagccgccagcagctcaagttaaatcaatctttgtatatcccatcaaatcattgccgtggaatttctgtttctcaagcacctatctcttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctagggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagggttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcgttgaatgcgttaaattctcttctcaaggaacctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaagagatccggatcaataagttgacatttgaggntgtcaagctatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44977" stop="48100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45277" g_stop="45393" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="266" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="443" r_length="177" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.804" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="532" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="597" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47800" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="691" r_length="94" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E453101" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45277" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCA-TGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCT</genome_strand>
        <mrna_strand>GAGTGATGGCAGAAGTCATAGGA--GCCGCCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATTGCCGTGGAATTTCTGTTTCTCAAGCACCTATCTCTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTAGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGGGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCGTTGAATGCGTTAAATTCTCTTCTCAAGGAACCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAAGAGATCCGGATCAATAAGTTGACATTTGAGGNTGTCAAGCTATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448314" ref_strand="+" ref_description="SGN-E448314 [cSTS-2-J7]">
      <seq>cctcgtgccgaattcggcacgagggagtgatggcagaagtcataggagcaccagcagctcaagttaaatcaatctttgtatatcccatcaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgattcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcattgaatgcgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44972" stop="47741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45278" g_stop="45393" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="138" r_length="113" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="288" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="465" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="554" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47540" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="573" r_length="19" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E448314" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45278" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAA</genome_strand>
        <mrna_strand>AGTGATGGCAGAAGTCATAGGA--GC-ACCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGATTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCATTGAATGCGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452837" ref_strand="+" ref_description="SGN-E452837 [cSTS-18-I17]">
      <seq>gatggcagaagtcataggagcaccagcagctcaagttaaatcaatctttgtatatcccatcaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcattgaatgcgataaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44981" stop="48038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45281" g_stop="45393" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="260" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="437" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="526" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="591" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47738" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="623" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E452837" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45281" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTG</genome_strand>
        <mrna_strand>GATGGCAGAAGTCATAGGA--G-CACCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCATTGAATGCGATAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276445" ref_strand="+" ref_description="SGN-E276445 [cLEN-17-L9]">
      <seq>gatggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44981" stop="47850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45281" g_stop="45393" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="263" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="440" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="529" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47550" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="558" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E276445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45281" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCT</genome_strand>
        <mrna_strand>GATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271176" ref_strand="+" ref_description="SGN-E271176 [cLEM-5-C19]">
      <seq>atggcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctantcccaggatcgatgaatgcgttaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44982" stop="47844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45282" g_stop="45393" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="262" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="439" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="528" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47544" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="551" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E271176" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45282" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTC</genome_strand>
        <mrna_strand>ATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTANTCCCA...................................................................................GGATCGATGAATGCGTTAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454025" ref_strand="+" ref_description="SGN-E454025 [cSTS-21-N4]">
      <seq>tggcagaagtcataggagcaccagcagctcaagttaaatcaatctttgtatatcccatcaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcattgaatgcgataaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccggatcaaatagttgacatttgagggtgtcaaactatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44983" stop="48100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45283" g_stop="45393" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="258" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="435" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="524" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="589" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47800" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="683" r_length="94" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E454025" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45283" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCT</genome_strand>
        <mrna_strand>TGGCAGAAGTCATAGGA--G-CACCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCATTGAATGCGATAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCGGATCAAATAGTTGACATTTGAGGGTGTCAAACTATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271931" ref_strand="+" ref_description="SGN-E271931 [cLEM-8-E15]">
      <seq>gcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaagagatccaaatcaataagttaacatttgagggtgtcaaactatgctctcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44985" stop="48103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45285" g_stop="45393" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="259" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="436" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="525" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="590" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47803" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="687" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E271931" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45285" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGC</genome_strand>
        <mrna_strand>GCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAAGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370792" ref_strand="+" ref_description="SGN-E370792 [TUS-28-L2]">
      <seq>gcagaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44985" stop="47267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45285" g_stop="45393" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="259" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="46967" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="325" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E370792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45285" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="46967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATG</genome_strand>
        <mrna_strand>GCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701978" ref_strand="+" ref_description="SGN-E701978 [FA17BH06]">
      <seq>cacaagtaataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccaaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacaacagtagcaggctctgagccaacagaaactctcttgaaattccgatccgataangccttgcgtccgaataagaaacaacaagggaaggtatattttggacagaacatggtttgttccgacgctcttagccatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44986" stop="48786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45286" g_stop="45393" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="258" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="435" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="524" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="589" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="692" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48238" g_stop="48348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="803" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="48439" g_stop="48486" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="851" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E701978" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45286" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48348"/>
          <exon e_start="48439" e_stop="48486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGA</genome_strand>
        <mrna_strand>CACAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAANGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG..........................................................................................GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452727" ref_strand="+" ref_description="SGN-E452727 [cSTS-17-D14]">
      <seq>cagaagtcataggagcaccagcagctcaagttaaatcaatctttgtatatcccatcaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgattcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcattgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccggatcaataagttgacatttgaaggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacagcagtagcaggctctgagccaacagaaactctcttgaaaattcgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44986" stop="48608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45286" g_stop="45393" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="255" r_length="150" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="432" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="521" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="586" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="689" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48238" g_stop="48308" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="760" r_length="71" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E452727" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45286" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATC</genome_strand>
        <mrna_strand>CAGAAGTCATAGGA--G-CACCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGATTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCATTGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCGGATCAATAAGTTGACATTTGAAGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAGCAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAAATTCGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560267" ref_strand="+" ref_description="SGN-E560267 [19895]">
      <seq>cagaagtcataggagcaccagcagctcaagttaaatcaatctttgtatatcccatcaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44986" stop="47737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45286" g_stop="45393" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="255" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="432" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47437" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="520" r_length="88" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E560267" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45286" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCA</genome_strand>
        <mrna_strand>CAGAAGTCATAGGA--G-CACCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456484" ref_strand="+" ref_description="SGN-E456484 [cSTS-29-N5]">
      <seq>cagaagtcataggagcgccagcagctcaagttaaatcaatctttgtatatcccatcaaatcatgccgtggaatttctgtttctcaagcacctatctcttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctattgtggttctccacacatctagggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagggttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44986" stop="47734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45286" g_stop="45393" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="255" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="433" r_length="178" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.804" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47434" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="518" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E456484" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45286" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTA-TGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATC</genome_strand>
        <mrna_strand>CAGAAGTCATAGGAGCG-C--CAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCTCTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATTGTGGTTCTCCACACATCTAGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGGGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454177" ref_strand="+" ref_description="SGN-E454177 [cSTS-22-K12]">
      <seq>gtcataggagcgccagcagctcaagttaaatcaatctttgtatatcccatcaaatcatgccgtggaatttctgtttctcaagcacctatctcttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctagggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagggttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcgttgaatgcgttaaattctcttctcaaggacctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44991" stop="48030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45291" g_stop="45393" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="250" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="427" r_length="177" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.804" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="516" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="580" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47730" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="604" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E454177" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45291" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACC</genome_strand>
        <mrna_strand>GTCATAGGAGCG-C--CAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCTCTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTAGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGGGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCGTTGAATGCGTTAAATTCTCTTCTCAAGGA-CCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273305" ref_strand="+" ref_description="SGN-E273305 [cLEM-24-L14]">
      <seq>taataggagcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44992" stop="48026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45292" g_stop="45393" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="252" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="429" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="518" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="583" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47726" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="603" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E273305" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45292" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTG</genome_strand>
        <mrna_strand>TAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273056" ref_strand="+" ref_description="SGN-E273056 [cLEM-25-J20]">
      <seq>taataggagccgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44992" stop="47850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45292" g_stop="45393" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="253" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="430" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="519" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47550" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="548" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E273056" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45292" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAGGAG-CGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCT</genome_strand>
        <mrna_strand>TAATAGGAGCCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289369" ref_strand="+" ref_description="SGN-E289369 [cLET-3-A3]">
      <seq>taataggagcgccagcagcagctcaagttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatctccaggatcgatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44992" stop="47739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45292" g_stop="45393" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="252" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="429" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="518" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47533" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="530" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E289369" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45292" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAAT</genome_strand>
        <mrna_strand>TAATAGGAGCGCCAGCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCTCCA...................................................................................GGATCGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575880" ref_strand="+" ref_description="SGN-E575880 [35573]">
      <seq>cataggagcaccagcagctcaagttaaatcaatctttgtatatcccatcaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcattgaatgcgataaattctcttctcaaggagcctgttccagtaaaatcgttttagacccaatgtccttgttgatggatgtgaaccattttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="44994" stop="48037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45293" g_stop="45393" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="248" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="425" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="514" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="580" r_length="66" r_score="0.923"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47737" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="612" r_length="32" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E575880" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45293" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGT-AAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCA-TTTGCT</genome_strand>
        <mrna_strand>CATAGGA--G-CACCAGCAGCTCAAGTTAAATCAATCTTTGTATATCCCATCAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCATTGAATGCGATAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264511" ref_strand="+" ref_description="SGN-E264511 [cLEG-67-O21]">
      <seq>gcgccagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttngttgatggatgtgaaccatttgctgaggatttgtggaangagatccaaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="45000" stop="48556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45300" g_stop="45393" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="244" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="421" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="510" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="575" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="679" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48238" g_stop="48256" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="698" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E264511" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45300" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTT-GTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAG</genome_strand>
        <mrna_strand>GCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTNGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAANGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251205" ref_strand="+" ref_description="SGN-E251205 [cLEG-10-L18]">
      <seq>cagcagcagctcaggttaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="45004" stop="48038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45304" g_stop="45393" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="240" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="417" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="506" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="571" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47707" g_stop="47738" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="603" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E251205" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45304" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTG</genome_strand>
        <mrna_strand>CAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274520" ref_strand="+" ref_description="SGN-E274520 [cLEN-11-L9]">
      <seq>ctcaggtaaaatcaatctttgtatatccaattaaatcatgccgtggaatttctgtttctcaagcacctatcacttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="45013" stop="47838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45313" g_stop="45393" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="231" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="408" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="497" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47538" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="514" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E274520" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45313" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTT</genome_strand>
        <mrna_strand>CTCAGGTAAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268263" ref_strand="+" ref_description="SGN-E268263 [cLEM-3-M6]">
      <seq>tttgtatatccaattaaatcatgcccgtggaatttctgtttctcaagcacctatcacttctacctggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatacctcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="45030" stop="47850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45330" g_stop="45393" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928">
            <donor d_prob="0.937" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="217" r_length="151" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="394" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="483" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47522" g_stop="47550" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="512" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E268263" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45330" e_stop="45393"/>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTATATCCAATTAAATCATG-CCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTA-CTGGTAGTGCTCAATTTTACCTTTAGATCTTGAAATTTTTCATTTTTGGGTTTGTTTTACTGGTTATGGAGTGTAAAGGGAGTCTTCTGCTAGTGGGGTAAAGGAAAATAAGATAAAAGTTGATAACTTTCCTCTTTTTATGTTTTGGTTCGTATAAAAGTGTCAAGATCTGAGAAGATAGATTGCTTTTTTGGAGAATAGTTATCTGTTTGTTTCCTTCTTATTTGGGAAAAGTTGGATTTCCCAGTTCCGACTTTCAATATGCAAAACCAAATCAAGATTTGAACTCAGGATAAAAGTTATCCCCATCGAAATTTACATTTACACAATATATGCATGTTATGTGTTTATATTTATACTTCATTTTATTTTATTAAATCACATGATAATAAAAATTGCATCGACTTAATGGAAATATCCGGTGCCGTAAGTACTTTTCTTTGGAAACATTTGATAAATATAAAAAATAACTTAAAATTAACTTATAATAAATTTAAAAGTGTTTGACAAGATATAAAGATGAGTTAAAATAAGTTGAAAATAACTTCAAATAAGTTAGAAACCAAAAGTCTCAGATTGATTTTTTATTTTTGACTTAAAACTATTTTTTTTTTAAGTCAACTCCCTACTCATTTGTTCTCATTTCCGAAATGTAAAAACACAAAGTACTACTCCATTAGATATGAAATTTGTTAGAAGTTTGTTTTGTGGTCACCTTCTAGGATGGAGTACCTTGGGACAAAATTTATGTAGTACGGTTTAGTTTCACTTTTGTGCATTTTGAGCAAATAATAGTCTCGTTAACAAATTGTTAGTGGTGAGTTTTCTACTTTTTATTCCTTAACTTGTTTCTTCATTCATATTATCACTTGAAAATCTGTCTCAAAAAAAAATTATCACTTGAAAATTTGTATCTTGTTACATGAAACAGGATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATA-CTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCT</genome_strand>
        <mrna_strand>TTTGTATATCCAATTAAATCATGCCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACCTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708770" ref_strand="+" ref_description="SGN-E708770 [FA36CH06]">
      <seq>catctcttctactggatttcgatgggatcgacaatggttagtggtgaattccaaaggcagggcctatactcaaagagttgaaccaaagcttgctcttgtcgaagtggcattgccaattgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcaaagctcccggtatggatccactgaaaattccactaagtgacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcatgctatcccagggatcgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccaaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacaacagtagcaggctctgagccaacagaaactctcttgaaattccgatccgataaggccttgcgtccgaataagaaacaacaagggaaggtatattttggacagaacatggtttgttccgacgctcttagccatggaaaaggcaagatagtcaaggttggggatcctgtttatgtccataaggttgttccttctagtgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="46018" stop="48850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46322" g_stop="46471" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="164" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="341" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="430" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="495" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="598" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48238" g_stop="48348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="709" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48439" g_stop="48550" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="821" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E708770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46322" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48348"/>
          <exon e_start="48439" e_stop="48550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTG</genome_strand>
        <mrna_strand>GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG..........................................................................................GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451570" ref_strand="+" ref_description="SGN-E451570 [cSTS-13-J5]">
      <seq>tggtgaaattcccaaaggcagggcctactacttcaaagagttgaacccgaagcttgcttctttgtcgaaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgactcttatctagttatcagaagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctagggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagggttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcgttgaatgcgttaaattctcttctcaaggaacctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="46049" stop="48038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46349" g_stop="46471" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.854"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="309" r_length="178" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.804" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="398" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="463" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47707" g_stop="47738" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="495" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E451570" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46349" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTG-AATTCC-AAAGGCAGGGCCTA-TAC-TCAAAGAGTTGAA-CCAAAGCTTGC-TC-TTGTCG-AAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCA-AAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTG</genome_strand>
        <mrna_strand>TGGTGAAATTCCCAAAGGCAGGGCCTACTACTTCAAAGAGTTGAACCCGAAGCTTGCTTCTTTGTCGAAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTAGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGGGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCGTTGAATGCGTTAAATTCTCTTCTCAAGGAACCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481779" ref_strand="+" ref_description="SGN-E481779 [cSTD-19-B17]">
      <seq>ccgaagcttgctcttgtcgaagtggcattgccaactgaggccttttctgaaggctgggaaccaaataatgattcttatctagttatcagagctcccggtatggatccactgaacattccactaagtaacccatctgtagtgtcggatggtgtctcggtctgggagtggtctggttctgccttggacgagggagctgaggcagctatgtggttctccacacatctggggaaaccaagtcggctagttcgctttagtgaagttaaggaaatgagagttgtagatcctaattatgctcaaggatacaatgttatgttttctgatggatatccatacctcgtgctatcccagggatcattgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccggatcaataagttgacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacagcagtagcaggctctgagccaacagaaactctcttgaaattccgttccgataaggccnttgcgtccgaataagaaacaacaagggaaggtatattttggacagaacatgggtttgttccgacgctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="46090" stop="48777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46390" g_stop="46471" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430">
            <donor d_prob="0.864" d_score="0.96"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46902" g_stop="47078" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="259" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.804" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47350" g_stop="47438" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="348" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="413" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="516" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48238" g_stop="48348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="628" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48439" g_stop="48477" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="668" r_length="40" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E481779" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46390" e_stop="46471"/>
          <exon e_start="46902" e_stop="47078"/>
          <exon e_start="47350" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48348"/>
          <exon e_start="48439" e_stop="48477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAGGTAGTGTCATAGTTTTCAGTCGAAAATAAGGTCATAGTTTGATTATATTTTTTACTATGGATTATCTTATTGATACAGTTTCTCTTTTTAGCTAAATGGTGCTGCAGCAAAACTGGTCATGTTTTTCTCCTAGCAATCTATTACTACTAATATAGTCGACAAGAAAGAGAGAGGATAATAAATGTTAAAAGATAGATCATTCTACTGAAAATGTTGATATGCCAAGCTAACAATCAGTGTTTGGTTCCCTGTGTGACTTAAGAATTTAAGATCTTGGATATTGATGTTTGAATTGTAATACTGTTATTGTTTTTTAACTCCTTGTAGCATCTCCTTAATCATAGAAGCTTCTTGTCATACTGATAGCCCACAAGAAAATGACAAAGATTGGCCTATCTTTTTGATATCTCAAATTACCTTTTGGATGTAGTTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAGGTATAGCTTATCGCATAGTTCTATCTAGATTTTCCTCGTCTATATGTTACTCATATGAAATCACTGATGTTACAATATCCTTGTCTTAAATTTGCTCTGTATATCTCTTCCACCTTTTATGCTTAAATTCTCTACGTATTGTCCAGCTTCCGATACGTAGTTTATCGACTATCGCCTATTATTAGGTTCATGTTCTTGCTTTAGTAGAAAACTGCTGGAATAAACGTATACAATTTGATCGAAATAAGTTGCTTCCTGTTGACTCTTGTAGTTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCC-TTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACAT-GGTTTGTTCCGACGCTCTT</genome_strand>
        <mrna_strand>CCGAAGCTTGCTCTTGTCGAAGTGGCATTGCCAACTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGATTCTTATCTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCAGAGCTCCCGGTATGGATCCACTGAACATTCCACTAAGTAACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG...............................................................................................................................................................................................................................................................................TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCGTGCTATCCCAG...................................................................................GGATCATTGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCGGATCAATAAGTTGACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAGCAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGTTCCGATAAGGCCNTTGCGTCCGAATAAGAAACAACAAGGGAAG..........................................................................................GTATATTTTGGACAGAACATGGGTTTGTTCCGACGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396441" ref_strand="+" ref_description="SGN-E396441 [TUS-47-O13](-)">
      <seq>caaggatacaatgttatgttttgtgatggatatccatacctcatgctatcccagggaccgatgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgcggaaggagatccaaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacaacagtagcaggctttgagccaacagaaactctcttgaaattccgatccgataaggccttgcgtccgaataagaaacaacaagggaaggtatattttggacagaacatggtttgttctgacgctcttagccatggaaaaggcaagatagtcaaggttggggatcctgtttatgtccataaggttgttccttctagtgctgaggctccagcttgaactctagttgttctatcacagtaatgtaaaagtgtgcatctgaataaggtgatcccaaaagataagaatcctaatgtaaggaaaaatggtcatccaggccaatgctaaataaatctacataaacgtttcgccagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="47085" stop="48999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47385" g_stop="47438" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.936" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="119" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="222" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48238" g_stop="48348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="333" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48439" g_stop="48698" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="594" r_length="261" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="606"/>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E396441" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47385" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48348"/>
          <exon e_start="48439" e_stop="48698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAA-TGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTGT</genome_strand>
        <mrna_strand>CAAGGATACAATGTTATGTTTTGTGATGGATATCCATACCTCATGCTATCCCAG...................................................................................GGACCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGCGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTTTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG..........................................................................................GTATATTTTGGACAGAACATGGTTTGTTCTGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACAGTAATGTAAAAGTGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATCCTAATGTAAGGAAAAATGGTCATCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390654" ref_strand="+" ref_description="SGN-E390654 [TUS-47-O16](-)">
      <seq>ggatatccatcctccatggtatcccagggatcgaggaatgcgttaaattctcttttcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccaaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacaacagtagcaggctctgagccaacagaaactctcttgaaattccgatccgataaggccttgcgtccgaataagaaacaacaagggaaggtatattttggacagaacatggtttgttccgacgctcttagccatggaaaaggcaagatagtcaaggttggggatcctgtttatgtccataaggttgttccttctagtgctgaggctccagcttgaactctagttgttctatcactgtaatgtaaaatgtgcatctgaataaggtgatcccaaaagataagaatactaatgtaaggaaaaatggtcttccaggccaatgctaaataaatctacataaacgtttcgcctgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="47219" stop="48999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47412" g_stop="47438" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.936" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47522" g_stop="47586" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="92" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="195" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48238" g_stop="48348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="306" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48439" g_stop="48698" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="566" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="578"/>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E390654" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47412" e_stop="47438"/>
          <exon e_start="47522" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48348"/>
          <exon e_start="48439" e_stop="48698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATATCCATACCTCATGCTATCCCAGGTAAGTAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTGT</genome_strand>
        <mrna_strand>GGATATCCATCCTCCATGGTATCCCAG...................................................................................GGATCGAGGAATGCGTTAAATTCTCTTTTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG..........................................................................................GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545757" ref_strand="+" ref_description="SGN-E545757 [TUS-68-M9](-)">
      <seq>taaatcatcatttaaattcaacctaaacatccatagaacaagagcttaggctagattttcttggtccatgttctgcagggatcgttgaatgcgttaaattctcttctcaaggagcctgttccagtaaatcgttttagacccaagtatactcttgtcctacttatataatttgtttatgattggttgtttactttctttcctttttctgtacaaactgttagtactttagattaactcagttaaattttttgacaaagtcttctttcacagtgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccgaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacagcagtagcaggctctgagccaacagaaactctcttgaaattccgatccgataaggccttgcgtccgaataagaaacaacaagggaaggtatattttggacagaacatggtttgttccgacgctcttagccatggaaaaggcaagatagtcaaggtgggggatcctgtttatgtccataaggttgttccttctagtgctgaggctccagcttgaactctagttgttctatcactgtaatgtaaaatgtgcatctgaataaggtgatcccaaaagataagaatactaatgtaaggaaaaatggtcttccaggccactgctaaataaatctacataaacgtttcgcctgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="47144" stop="48999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47444" g_stop="47809" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48238" g_stop="48348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="484" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48439" g_stop="48696" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="742" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="744" polyA_stop="758"/>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E545757" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47444" e_stop="47809"/>
          <exon e_start="48238" e_stop="48348"/>
          <exon e_start="48439" e_stop="48696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTC--GTCCTACTTGTATAATTTGTTTATGATT-G--G-TTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAA-TTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCT</genome_strand>
        <mrna_strand>TAAATCATCATTTAAATTCAACCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGTTGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCTTGTCCTACTTATATAATTTGTTTATGATTGGTTGTTTACTTTCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTTGACAAAGTCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCGAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAGCAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG..........................................................................................GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTGGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCACTGCTAAATAAATCTACATAAACGTTTCGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287155" ref_strand="+" ref_description="SGN-E287155 [cLES-6-D5]">
      <seq>tcttctcaaggagcctgttccagtaaatcgttttagacccaatgtccttgttgatggatgtgaaccatttgctgaggatttgtggaaggagatccaaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacaacagtagcaggctctgagccaacagaaactctcttgaaattccgatccgataaggccttgcgtccgaataagaaacaacaagggaaggtatattttggacagaacatggtttgttccgacgctcttagccatggaaaaggcaagatagtcaaggttggggatcctgtttatgtccataaggttgttccttctagtgctgaggctccagcttgaactctagttgttctatcactgtaatgtaaaatgtgcatctgaataaggtgatcccaaaagataagaatactaatgtaaggaaaaatggtcttccaggccaatgctaaataaatctacataaacgtttcgcctgtatttcttttcatcattgtgaattgcatcaagcctggcttaaaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="47245" stop="49044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47545" g_stop="47586" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="145" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48238" g_stop="48348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="256" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48439" g_stop="48753" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="571" r_length="315" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E287155" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47545" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48348"/>
          <exon e_start="48439" e_stop="48753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTGTATTTCTTTTCATCATTGTGAATTGCATCAAGCCTGGCTTAAAACTATGTAAATGT</genome_strand>
        <mrna_strand>TCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA........................................................................................................................TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG..........................................................................................GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTGTATTTCTTTTCATCATTGTGAATTGCATCAAGCCTGGCTTAAAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306504" ref_strand="+" ref_description="SGN-E306504 [cLEX-13-I18]">
      <seq>tttagacccaatgtccttgctgatggatgtgaaccatttgctgaggatttgtggaaggagatccaaatcaataagttaacatttgagggtgtcaaactatgctctcgctgtaaggtacctaccataaatcaagaaacaacagtagcaggctctgagccaacagaaactctcttgaaattccgatccgataaggccttgcgtccgaataagaaacaacaagggaaggtatattttggacagaacatggtttgttccgacgctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="47402" stop="48777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47576" g_stop="47586" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120">
            <donor d_prob="0.904" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47707" g_stop="47809" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="114" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48238" g_stop="48348" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="225" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48439" g_stop="48477" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="264" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E306504" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47576" e_stop="47586"/>
          <exon e_start="47707" e_stop="47809"/>
          <exon e_start="48238" e_stop="48348"/>
          <exon e_start="48439" e_stop="48477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAGGTAAGACCTCATGAACTTACTTTCTTACTAAACGACAGAGAATAACCTTTGCAAACTGGAAGCTGTTTTTTCCTCCTAATTTTTTCTTTCTGTATAATGTTCATGCAACATGATATTGAAGAGAAATTTAACATATCTGAGGTCCATTCGTAGCAACTCCATACGTAGTTTTTTTCTATAGTCGTGGGATAGGCATGAATTCAGACCTATTATTCTAGCAACTTGTTGGACAAGATCAAAAGAGTCTAGTTGTGTTTCTCCCTTTATGATGTTGTGATGAGCATCTTTGATTCAAGTTTTAACTAAGAGAATGGAGTTGATTATGGAACATTTTTTTAAAATTTTTTGTACTTAACCTTCCTGCATTTGAACGCTCATCATCAAGATAAACTCTTCATATTTGACCTTGATTCTGTTCTTTATATAAGGTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTT</genome_strand>
        <mrna_strand>TTTAGACCCAA........................................................................................................................TGTCCTTGCTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG..........................................................................................GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396303" ref_strand="+" ref_description="SGN-E396303 [TUS-47-O15](-)">
      <seq>ataaggccttgcgtccgaatatgaaacaacaagggaaggtatattttggacagaacatggtttgttccgacgctcttagccatggaaaaggcaagatagtcaaggttggggatcctgtttatgtccataaggttgttccttctagtgctgaggctccagcttgaactctagttgttctatcactgtaatgtaaaatgtgcatctgaataaggtgatcccaaaagataagaatactaatgtaaggaaaaatgaggttccaggccaatgctaaataaatctacataaacgttacgcctgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="48011" stop="48999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48311" g_stop="48348" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48439" g_stop="48698" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="298" r_length="260" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="299" polyA_stop="310"/>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E396303" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48311" e_stop="48348"/>
          <exon e_start="48439" e_stop="48698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAGGTAAGATCTAATAAAGTGAGAAGTTCCATAACTAATTACCTAATAATCCCTACATAAATCACAAGTAGGATCTTTCATGTTATTTTGCAGGTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTGT</genome_strand>
        <mrna_strand>ATAAGGCCTTGCGTCCGAATATGAAACAACAAGGGAAG..........................................................................................GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGAGGTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTACGCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331277" ref_strand="+" ref_description="SGN-E331277 [cTOD-6-P11]">
      <seq>tttagcttgaccaatacacctactcccgctaccctcctcgctgttgtcatcttcctcatcagcggctctcagagacctgatctacgttgtggatccggattagccgtgattctgtacgcggaaaccctgcatagatgatcattatcagaagtttttgtttttcttcatgagaatctgagttgaaaaggcatgctcttttactccttccgtaccaaacagttcacttcaaagctaatcccatgtaagtctttctctaacttcaccattaaccgtgtattctcagctctatctaacccttctcatactgaccaagaacctgaaatagactattcaatttctactttgaaaactgaaatgggactacccaaattgagttctcgtggaactgaaatggaaatacccatatctgataactcaatgaagattgccccaatacctaagtttaattcttgtgtaactgaagtagaagaacccctttctgataaatcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="61150" stop="62226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61453" g_stop="61926" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="492" r_length="474" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E331277" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61453" e_stop="61926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACTCCCGCTACCCTCCTCGCTGTTTTCATCTTCCTCATCAGCGTCTCTCAGAGACCTCCTTCATTTTGTTGAGCCTAAAAGATTCTTATATTTAAGGTTTAAACCCTGCATAGATGATCATTATCAGAAGTTTTTGTTTTTCTTCATGAGAATCTGAGTTGAAAAGGCATGCTCTTTTACTCCTTCCGTACCAAACAGTTCACTTCAAAGCTAATCCCATGTAAGTCTTTCTCTAACTTCACCATTAACCGTGTATTCTCAGCTCTATCTAACCCTTCTCATACTGACCAAGAACCTGAAATAGACTATTCAATTTCTACTTTGAAAACTGAAATGGGACTACCCAAATTGAGTTCTTGTGGAACTGAAATGGAAATACCCATATCTGATAACTCAATGAAGATTGCCCCAATACCTAAGTTTAATTCTTGTGTAACTGAAGTAGAAGAACCCCTTTCTGATAAATCATTT</genome_strand>
        <mrna_strand>CCTACTCCCGCTACCCTCCTCGCTGTTGTCATCTTCCTCATCAGCGGCTCTCAGAGACCTGATCTACGTTGTGGATCCGGATTAGCCGTGATTCTGTACGCGGAAACCCTGCATAGATGATCATTATCAGAAGTTTTTGTTTTTCTTCATGAGAATCTGAGTTGAAAAGGCATGCTCTTTTACTCCTTCCGTACCAAACAGTTCACTTCAAAGCTAATCCCATGTAAGTCTTTCTCTAACTTCACCATTAACCGTGTATTCTCAGCTCTATCTAACCCTTCTCATACTGACCAAGAACCTGAAATAGACTATTCAATTTCTACTTTGAAAACTGAAATGGGACTACCCAAATTGAGTTCTCGTGGAACTGAAATGGAAATACCCATATCTGATAACTCAATGAAGATTGCCCCAATACCTAAGTTTAATTCTTGTGTAACTGAAGTAGAAGAACCCCTTTCTGATAAATCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377514" ref_strand="+" ref_description="SGN-E377514 [TUS-20-P3](-)">
      <seq>acgaggccaaaaacttgttgagattttcagtagctggtgataagcaagtaaacatatttcaggattgtggattatctgctgcttccaccttggtttcttctcttccttcatcaatcagaagtgagatggccatgaaacttggagaaaagagaattctggatgactctggtagagttagacaacaaatagtgattggttcaaaagaacaggctgctgagtgcatgcagaggctagttagacgaaaggttatgttttctagcacaaggcaggctgttgcaggtttattgactgctggtgctgttcatggagtcagatatgtagcaaacaagatgcgcaaggcttggaaatcttgggtgtaattgtttcctgtttttgggtgacatcacgtcttttaactggttcagacatggggatatagccacaaccacagttacacctaatgacatgcggttcaacgatggagttcttagcatggatagagtttgccgactctcctgctgctttttcaaaataagacaaatagaatttgaggggggaaataaccaacaacccatcaaaaaatttcttctgaaagttttctgttcacttgtattcttttcttttatttatttcaaaggtgggaagagttcttcagggaaggtcgagctgttgtatgtttagaacatcctggtgaaaagaagttaatcaatgtttctaaacaaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="71600" stop="69331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71300" g_stop="71239" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71238" i_stop="70590" i_length="649">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70589" g_stop="70484" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="168" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70483" i_stop="70168" i_length="316">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70167" g_stop="69624" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="712" r_length="544" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E377514" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71300" e_stop="71239"/>
          <exon e_start="70589" e_stop="70484"/>
          <exon e_start="70167" e_stop="69624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAGGTCTCTCTCTTTTCTAAAGCTTTGTCTCGTGTTGCTTCCTTAACATGGTTAATTGTCCTGAATGATGCTAATAATTCTTTATTATAATCAATGCTTCTAATACGGGAACATATTTATATCGACGATAAAACACGTTTTTCTATTGAAGCATAAAAAAAAAAGTATGGTGTGAATGGGTGATCAAGAATATACAGCATGAGACATGCTAATGGGGCCCTTCTATTGTTGCCTGTTGTGTACATTTTTAGTGGTAATTTTTGACCTTGAATGGTAGCCTCTGTGGTCAGTGAAATTTATCTTTCTATTCTGAACATTTCTCAAATAGCTTTGAAGTCATTTGCTTTCACGACTTGTCAAGTAGAGTTTTGGGCATCACAAGTTCCCTTGCATGAAAATTAGTTAGTACTTTTACATGATTACAATTTGTACACACTCTGTTCATTGAGTCAATCTCGATCTTTGATTGCTTTCTTAAAATTTTCATATTACTTCTGGTAATACATCTATATGAGATTCTTTGACTACACAAGCACATCTTTTCTTTCTGATTGATCCAAGGAGATTGATATTGATTACACCTCTGTTGAGATATGTAAATAGGAAAATCAAGGTCAAGTCAATTGACATCTTTTAGTGTTATCCAAATCAGGATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTGGTACGTAAATCAACTGCAAAAAGAGTGAATTTTCTGGAAAGAATCTTAAAATTTCCTGTTCTTTCAGATTTTTTCCCTTGTTAGTAGTTCCTGTTGAATTGTGTCTAACTTCCTCATTAGTGAACATACACTTATATTTTAGTTATTTCACGTCTGTAACTCTTACGCTTAGATCCTGATACCATGTTGGATTGTGTGCTTGTCTCATCTCTAGAGAAAAGTTCTATTTAGTTATATTACTTGTTATGATAAGCTCTTCTAATGTTCCCTCCTCAGCTTAATCAAATCATTTCACCTATGCCATATTTTCTTGTAGGTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACCATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGGAATTGCTAT</genome_strand>
        <mrna_strand>ACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTG............................................................................................................................................................................................................................................................................................................................GTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACGATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550125" ref_strand="+" ref_description="SGN-E550125 [TUS-5-F35](-)">
      <seq>gaagaatacgaggccaaaaacttgttgagattttcagtagctggtgataagcaagtaaacatatttcaggattgtggattatctgctgcttccaccttggtttcttctcttccttcatcaatcagaagtgagatggccatgaaacttggagaaaagagaattctggatgactctggtagagttagacaacaaatagtgattggttcaaaagaacaggctgctgagtgcatgcagaggctagttagacgaaaggttatgttttctagcacaaggcaggctgttgcaggtttattgactgctggtgctgttcatggagtcagatatgtagcaaacaagatgcgcaaggcttggaaatcttgggtgtaattgtttcctgtttttgggtgacatcacgtcttttaactggttcagacatggggatatagccacaaccacagttacacctaatgacatgcggttcaacgatggagttcttagcatggatagagtttgccgactctcctgctgctttttcaaaataagacaaatagaatttgaggggggaaataaccaacaacccatcaaaaaatttcttctgaaagttttctgttcacttgtattcttttcttttatttatttcaaaggtgggaagagtacttcagggaaggtcgagctgttgtatggtagaacatcctgggaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="71607" stop="69357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71307" g_stop="71239" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71238" i_stop="70590" i_length="649">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70589" g_stop="70484" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="175" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70483" i_stop="70168" i_length="316">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70167" g_stop="69657" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="684" r_length="509" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E550125" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71307" e_stop="71239"/>
          <exon e_start="70589" e_stop="70484"/>
          <exon e_start="70167" e_stop="69657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAGGTCTCTCTCTTTTCTAAAGCTTTGTCTCGTGTTGCTTCCTTAACATGGTTAATTGTCCTGAATGATGCTAATAATTCTTTATTATAATCAATGCTTCTAATACGGGAACATATTTATATCGACGATAAAACACGTTTTTCTATTGAAGCATAAAAAAAAAAGTATGGTGTGAATGGGTGATCAAGAATATACAGCATGAGACATGCTAATGGGGCCCTTCTATTGTTGCCTGTTGTGTACATTTTTAGTGGTAATTTTTGACCTTGAATGGTAGCCTCTGTGGTCAGTGAAATTTATCTTTCTATTCTGAACATTTCTCAAATAGCTTTGAAGTCATTTGCTTTCACGACTTGTCAAGTAGAGTTTTGGGCATCACAAGTTCCCTTGCATGAAAATTAGTTAGTACTTTTACATGATTACAATTTGTACACACTCTGTTCATTGAGTCAATCTCGATCTTTGATTGCTTTCTTAAAATTTTCATATTACTTCTGGTAATACATCTATATGAGATTCTTTGACTACACAAGCACATCTTTTCTTTCTGATTGATCCAAGGAGATTGATATTGATTACACCTCTGTTGAGATATGTAAATAGGAAAATCAAGGTCAAGTCAATTGACATCTTTTAGTGTTATCCAAATCAGGATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTGGTACGTAAATCAACTGCAAAAAGAGTGAATTTTCTGGAAAGAATCTTAAAATTTCCTGTTCTTTCAGATTTTTTCCCTTGTTAGTAGTTCCTGTTGAATTGTGTCTAACTTCCTCATTAGTGAACATACACTTATATTTTAGTTATTTCACGTCTGTAACTCTTACGCTTAGATCCTGATACCATGTTGGATTGTGTGCTTGTCTCATCTCTAGAGAAAAGTTCTATTTAGTTATATTACTTGTTATGATAAGCTCTTCTAATGTTCCCTCCTCAGCTTAATCAAATCATTTCACCTATGCCATATTTTCTTGTAGGTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACCATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAA</genome_strand>
        <mrna_strand>GAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTG............................................................................................................................................................................................................................................................................................................................GTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACGATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTACTTCAGGGAAGGTCGAGCTGTTGTATG-GTAGAACATCCTGG-GAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550124" ref_strand="+" ref_description="SGN-E550124 [TUS-5-F35]">
      <seq>gttgtaccgatgcatgacttgattcagacatattgggatgggagaggttttatctcagcggtcgtttgcagaaaccagtgaacattcttacggataacttggatataaaaagcgtgaacagcgtgaatctgaaagctgcaacttctgctgctcttctccttttgccatctaaattcacggaggaagatttatatgccaaaatctgtagcctctcatatacaggtgacttgcgtatgctttttgcagaggacaaaaataaggtagatttgacatttgagtgggtttaaattttaaaattttgtggccctgactgtaccacatggaagtatcaatctacaagtaagtttatagtgtaattgggtagtttctcaattttatagttttatattacttccagcggatcaatgaatatcagttaatttgcatctcatatctacaaaatatcctttttggactagaatttgaatctcaacttttagcatagtatctcatagtgcattggcaactttcatgccacattaattgattgaattgattcttccattccgtgtacatgaatttcttcattgcatattgatccaggtgaacaaaattgtacaaggacagttccatttatttgaggaaatgtataagccatttctggaagaatacgaggccaaaaacttgttgagattttcagtagctggtgataagcaagtaaacatatttcaggattgtggattatctgctgcttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="73749" stop="70265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73449" g_stop="73372" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73371" i_stop="71960" i_length="1412">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71959" g_stop="71855" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="182" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71854" i_stop="71768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71767" g_stop="71239" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="711" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71238" i_stop="70590" i_length="649">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70589" g_stop="70565" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="736" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E550124" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73449" e_stop="73372"/>
          <exon e_start="71959" e_stop="71855"/>
          <exon e_start="71767" e_stop="71239"/>
          <exon e_start="70589" e_stop="70565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCAGTATGGCTTGTTTTGAACTGCTATTTAAATAACATATTTTACAAAGGACTTCGGTTACAGTATTAGTTACATTGATGTAAGGACTTCCGAATGAATTTAAGTCAGTTAGTATATTTTGCAATCCTTTTGTGCCTCTTAGTCATTATTGTGGTACTTCTATGTCACATGAATTTAATTTCTGTTGTGATGAATTTAATAATATTGATGGTATCAGGAATAGTTCTTTATTGATGACTGACTTTCCTGAGTTGCTATAAATACCTATCAGTCAAAGAAGCATGAAATCATCATTTAAGAAGTAACTTGCTACATGATGTTAGCTTACTCTCATTTGTATAACAAAAGGGAGAAAACTTGGTAATGTTTTTATTCGCATTAAATGTGGTCAAATAAGCTTACATTGGTTAGGATAATATCCACGAGCTCTTGTATGTTCTCTTAGCCGTAGGATCTCACTTTGGTGGTACCTAGAGACATAAGAATAAAGAGTTATCATAATAACGCTGTATTATGATCCTATTATAATAACGTTGTATTATAATCCTATCATAATAACGTTGTATTATAATCCTATCTAATTTTCCTCTTCCCCAAAAGAAATCCTATCTAATATTTCCTCCCAAAAAAAATATAATCGATTCTGGCTTGAAACTATATGTATATCTCAGCCTGCATTTTCTTACAAAACAAATTAGCATGTGCTTTTGATATTTGATGGCACACCACTGCTAGCTTTTAAGCTCTCTCTTCTATTAACCTGAAAATGAACATGAAAAGTCAAGTGAGTGTGTATGGTAACTTGTTGTACTCTCAAAGATATTCCTAACAGAAGCAGTGCACTCAAACATTTCTTGCGAGTGTTAAAAAGAACTTCAGTTGGAAATATTCGAATGAGATGCTTTGTTTTCTTCTGTCTATGTCTGCGCAAAGGTTTTAAACTTTGATAAACTTGACATTTGACCACCAAAGCTCTATGTTGCATCAGATTTTACAGCTCATTGCAAAATGGAACCTGCATCCCTAACTCCCGTCTGATTTCTAGTTTCCTTCTTAGTCGTATTAGTTGGAGGCTTAATAGCTATTGCTTGATTTTTATTAGACATTTCTATGCTTTCTAATTGGGAAGTCATGGGCTCATGGCTGAAATTCTGCGCTTCCTGAATAGAGAGTTTAAGTCTACTGTGGACTGAAAATATAGAAATGCTCCTGATAAAATATATAAAAATACATAGAGAGGCCGTCTGTTTCTCTAAATTATATTACATGATGCATTCAACAGATATCGCTCAACTGATTTTTAGTTTCATACTCAGATATAATATTCTGAATTTCTTTATTGGCTCCTTTTTTGCTTGTTGTGGTGAGTCTGGTGACTGTCCGTCATCCATAACTTACATTTACTTCTAAATCAGGTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAGGTTAGTCTCTTTAATCATTTCTGATTTCTTGTCAAATAGTACAGGGACATAACACATGCCACTTGGATTTGGTGTTTACGCATGCAGGAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAGGTCTCTCTCTTTTCTAAAGCTTTGTCTCGTGTTGCTTCCTTAACATGGTTAATTGTCCTGAATGATGCTAATAATTCTTTATTATAATCAATGCTTCTAATACGGGAACATATTTATATCGACGATAAAACACGTTTTTCTATTGAAGCATAAAAAAAAAAGTATGGTGTGAATGGGTGATCAAGAATATACAGCATGAGACATGCTAATGGGGCCCTTCTATTGTTGCCTGTTGTGTACATTTTTAGTGGTAATTTTTGACCTTGAATGGTAGCCTCTGTGGTCAGTGAAATTTATCTTTCTATTCTGAACATTTCTCAAATAGCTTTGAAGTCATTTGCTTTCACGACTTGTCAAGTAGAGTTTTGGGCATCACAAGTTCCCTTGCATGAAAATTAGTTAGTACTTTTACATGATTACAATTTGTACACACTCTGTTCATTGAGTCAATCTCGATCTTTGATTGCTTTCTTAAAATTTTCATATTACTTCTGGTAATACATCTATATGAGATTCTTTGACTACACAAGCACATCTTTTCTTTCTGATTGATCCAAGGAGATTGATATTGATTACACCTCTGTTGAGATATGTAAATAGGAAAATCAAGGTCAAGTCAATTGACATCTTTTAGTGTTATCCAAATCAGGATTGTGGATTATCTGCTGCTTCCA</genome_strand>
        <mrna_strand>GTTGTACCGATGCATGACTTGATTC-AGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAG.......................................................................................GAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGATTATCTGCTGCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377515" ref_strand="+" ref_description="SGN-E377515 [TUS-20-P3]">
      <seq>ttgtacggatgcatgacttgattcaagacatattgggatgggagaggttttatctcagcggtcgtttgcagaaaccagtgaacattcttacggataacttggatataaaaagcgtgaacagcgtgaatctgaaagctgcaacttctgctgctcttctccttttgccatctaaattcacggaggaagatttatatgccaaaatctgtagcctctcatatacaggtgacttgcgtatgctttttgcagaggacaaaaataaggtagatttgacatttgagtgggtttaaattttaaaattttgtggccctgactgtaccacatggaagtatcaatctacaagtaagtttatagtgtaattgggtagtttctcaattttatagttttatattacttccagcggatcaatgaatatcagttaatttgcatctcatatctacaaaatatcctttttggactagaatttgaatctcaacttttagcatagtatctcatagtgcattggcaactttcatgccacattaattgattgaattgattcttccattccgtgtacatgaatttcttcattgcatattgatccaggtgaacaaaattgtacaaggacagttccatttatttgaggaaatgtataagccatttctggaagaatacgaggccaaaaacttgttgagattttcagtagctggtgataagcaagtaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="73748" stop="70946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73448" g_stop="73372" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73371" i_stop="71960" i_length="1412">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71959" g_stop="71855" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="182" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71854" i_stop="71768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71767" g_stop="71246" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="704" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E377515" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73448" e_stop="73372"/>
          <exon e_start="71959" e_stop="71855"/>
          <exon e_start="71767" e_stop="71246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCAGTATGGCTTGTTTTGAACTGCTATTTAAATAACATATTTTACAAAGGACTTCGGTTACAGTATTAGTTACATTGATGTAAGGACTTCCGAATGAATTTAAGTCAGTTAGTATATTTTGCAATCCTTTTGTGCCTCTTAGTCATTATTGTGGTACTTCTATGTCACATGAATTTAATTTCTGTTGTGATGAATTTAATAATATTGATGGTATCAGGAATAGTTCTTTATTGATGACTGACTTTCCTGAGTTGCTATAAATACCTATCAGTCAAAGAAGCATGAAATCATCATTTAAGAAGTAACTTGCTACATGATGTTAGCTTACTCTCATTTGTATAACAAAAGGGAGAAAACTTGGTAATGTTTTTATTCGCATTAAATGTGGTCAAATAAGCTTACATTGGTTAGGATAATATCCACGAGCTCTTGTATGTTCTCTTAGCCGTAGGATCTCACTTTGGTGGTACCTAGAGACATAAGAATAAAGAGTTATCATAATAACGCTGTATTATGATCCTATTATAATAACGTTGTATTATAATCCTATCATAATAACGTTGTATTATAATCCTATCTAATTTTCCTCTTCCCCAAAAGAAATCCTATCTAATATTTCCTCCCAAAAAAAATATAATCGATTCTGGCTTGAAACTATATGTATATCTCAGCCTGCATTTTCTTACAAAACAAATTAGCATGTGCTTTTGATATTTGATGGCACACCACTGCTAGCTTTTAAGCTCTCTCTTCTATTAACCTGAAAATGAACATGAAAAGTCAAGTGAGTGTGTATGGTAACTTGTTGTACTCTCAAAGATATTCCTAACAGAAGCAGTGCACTCAAACATTTCTTGCGAGTGTTAAAAAGAACTTCAGTTGGAAATATTCGAATGAGATGCTTTGTTTTCTTCTGTCTATGTCTGCGCAAAGGTTTTAAACTTTGATAAACTTGACATTTGACCACCAAAGCTCTATGTTGCATCAGATTTTACAGCTCATTGCAAAATGGAACCTGCATCCCTAACTCCCGTCTGATTTCTAGTTTCCTTCTTAGTCGTATTAGTTGGAGGCTTAATAGCTATTGCTTGATTTTTATTAGACATTTCTATGCTTTCTAATTGGGAAGTCATGGGCTCATGGCTGAAATTCTGCGCTTCCTGAATAGAGAGTTTAAGTCTACTGTGGACTGAAAATATAGAAATGCTCCTGATAAAATATATAAAAATACATAGAGAGGCCGTCTGTTTCTCTAAATTATATTACATGATGCATTCAACAGATATCGCTCAACTGATTTTTAGTTTCATACTCAGATATAATATTCTGAATTTCTTTATTGGCTCCTTTTTTGCTTGTTGTGGTGAGTCTGGTGACTGTCCGTCATCCATAACTTACATTTACTTCTAAATCAGGTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAGGTTAGTCTCTTTAATCATTTCTGATTTCTTGTCAAATAGTACAGGGACATAACACATGCCACTTGGATTTGGTGTTTACGCATGCAGGAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACAT</genome_strand>
        <mrna_strand>TTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAG.......................................................................................GAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231933" ref_strand="+" ref_description="SGN-E231933 [cLED-7-J22]">
      <seq>ttgtacggatgcatgacttgattcaagacatattgggatgggagaggttttatctcagcggtcgtttgcagaaaccagtgaacattcttacggataacttggatataaaaagcgtgaacagcgtgaatctgaaagctgcaacttctgctgctcttctccttttgccatctaaattcacggaggaagatttatatgccaaaatctgtagcctctcatatacaggtgacttgcgtatgctttttgcagaggacaaaaataaggtagatttgacatttgagtgggtttaaattttaaaattttgtggccctgactgtaccacatggaagtatcaatctacaagtaagtttatagtgtaattgggtagtttctcaattttatagttttatattacttccagcggatcaatgaatatcagttaatttgcatctcatatctacaaaatatcctttttggactagaatttgaatctcaacttttagcatagtatctcatagtgcattggcaactttcatgccacattaattgattgaattgattcttccattccgtgtacatgaatttcttcattgcatattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="73748" stop="71072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73448" g_stop="73372" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73371" i_stop="71960" i_length="1412">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71959" g_stop="71855" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="182" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71854" i_stop="71768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71767" g_stop="71372" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="578" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E231933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73448" e_stop="73372"/>
          <exon e_start="71959" e_stop="71855"/>
          <exon e_start="71767" e_stop="71372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCAGTATGGCTTGTTTTGAACTGCTATTTAAATAACATATTTTACAAAGGACTTCGGTTACAGTATTAGTTACATTGATGTAAGGACTTCCGAATGAATTTAAGTCAGTTAGTATATTTTGCAATCCTTTTGTGCCTCTTAGTCATTATTGTGGTACTTCTATGTCACATGAATTTAATTTCTGTTGTGATGAATTTAATAATATTGATGGTATCAGGAATAGTTCTTTATTGATGACTGACTTTCCTGAGTTGCTATAAATACCTATCAGTCAAAGAAGCATGAAATCATCATTTAAGAAGTAACTTGCTACATGATGTTAGCTTACTCTCATTTGTATAACAAAAGGGAGAAAACTTGGTAATGTTTTTATTCGCATTAAATGTGGTCAAATAAGCTTACATTGGTTAGGATAATATCCACGAGCTCTTGTATGTTCTCTTAGCCGTAGGATCTCACTTTGGTGGTACCTAGAGACATAAGAATAAAGAGTTATCATAATAACGCTGTATTATGATCCTATTATAATAACGTTGTATTATAATCCTATCATAATAACGTTGTATTATAATCCTATCTAATTTTCCTCTTCCCCAAAAGAAATCCTATCTAATATTTCCTCCCAAAAAAAATATAATCGATTCTGGCTTGAAACTATATGTATATCTCAGCCTGCATTTTCTTACAAAACAAATTAGCATGTGCTTTTGATATTTGATGGCACACCACTGCTAGCTTTTAAGCTCTCTCTTCTATTAACCTGAAAATGAACATGAAAAGTCAAGTGAGTGTGTATGGTAACTTGTTGTACTCTCAAAGATATTCCTAACAGAAGCAGTGCACTCAAACATTTCTTGCGAGTGTTAAAAAGAACTTCAGTTGGAAATATTCGAATGAGATGCTTTGTTTTCTTCTGTCTATGTCTGCGCAAAGGTTTTAAACTTTGATAAACTTGACATTTGACCACCAAAGCTCTATGTTGCATCAGATTTTACAGCTCATTGCAAAATGGAACCTGCATCCCTAACTCCCGTCTGATTTCTAGTTTCCTTCTTAGTCGTATTAGTTGGAGGCTTAATAGCTATTGCTTGATTTTTATTAGACATTTCTATGCTTTCTAATTGGGAAGTCATGGGCTCATGGCTGAAATTCTGCGCTTCCTGAATAGAGAGTTTAAGTCTACTGTGGACTGAAAATATAGAAATGCTCCTGATAAAATATATAAAAATACATAGAGAGGCCGTCTGTTTCTCTAAATTATATTACATGATGCATTCAACAGATATCGCTCAACTGATTTTTAGTTTCATACTCAGATATAATATTCTGAATTTCTTTATTGGCTCCTTTTTTGCTTGTTGTGGTGAGTCTGGTGACTGTCCGTCATCCATAACTTACATTTACTTCTAAATCAGGTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAGGTTAGTCTCTTTAATCATTTCTGATTTCTTGTCAAATAGTACAGGGACATAACACATGCCACTTGGATTTGGTGTTTACGCATGCAGGAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGAT</genome_strand>
        <mrna_strand>TTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAG.......................................................................................GAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279282" ref_strand="-" ref_description="SGN-E279282 [cLEL-4-O12](-)">
      <seq>gcacgagcaggaacttaattgaaaagatttgccaaattgatagctaaattttgttaattagggttcaaattgcacatgtgtactgatcaaaatggtgggacaggataaagctgagctagggggtttgcttgaaattctacccccggtagagttttgctgtatatatggttctaaacttcatcccaacaacaaagatgagacatctatgacagattacattattggagtatctgatcctcgacaatggcattctgagaatctaaaattgaacaaggatcactatgcttcgtgtctcattcgccttggtggagcaaggatgataactgatattgcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="74660" stop="73407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74367" g_stop="74279" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74278" i_stop="74119" i_length="160">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74118" g_stop="74009" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="199" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74008" i_stop="73900" i_length="109">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73899" g_stop="73843" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="256" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73842" i_stop="73772" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.516" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73771" g_stop="73709" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="319" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73708" i_stop="73591" i_length="118">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73590" g_stop="73573" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="337" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E279282" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279282" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74367" e_stop="74279"/>
          <exon e_start="74118" e_stop="74009"/>
          <exon e_start="73899" e_stop="73843"/>
          <exon e_start="73771" e_stop="73709"/>
          <exon e_start="73590" e_stop="73573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCAGTAAGTGGTAACCAATGCATTATCTTAATAATTTCAAGCGTGTCTTCCAGATGTTTGATAAAATTCCTGTGAGAATACTTCAAGATTTTGATCCAATTGAACATATGTTTGTATGTACCATATTACATGATTTTTGTTTTGTTTTCATATGTTAATGTAGAAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAGGTTTTTTCTACTTCCTTCTTTCGGATAATGAATTCCACTCATGGTTTTATTTGATCAAGAAGTTCTATAAAATACTGCAATAGTACATTGCTAACAAATTCATTGCTAGACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAGGTAATTGCTGAATTTTAAGCAACTCTCTGTCCATCTTTGTTTTCAAAATCTAACGTCTTTCTACAATCCAGAATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATGGTGCTATTTCCTTTCTTGAATTAACTTTGATTTCCCTCATTTCTTTACTACTTTATATATGTTTTTAGTCTTACATTTCAACTCTAACTAAAGAACAATTTACTGTGCATTGTGTCAGATAACTGATATTGCAAAT</genome_strand>
        <mrna_strand>GCACGAGCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCA................................................................................................................................................................AAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAG.............................................................................................................ACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAG.......................................................................AATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATG......................................................................................................................ATAACTGATATTGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613312" ref_strand="+" ref_description="SGN-E613312 [63084]">
      <seq>tggatgcatgctttgttgttggacaggttcaagactgctgatgctgtcgattggaggaaatctggtgccactgtgctgcctgacttgatcgctaccaaagaatggcttacctctgaaaatttgaaatgcagtgacctgtgaaagtcctgtttgattattttcttgcctataatggtaggtagatttgtattacaagaatggttatgagttctatgaatgtgatgaggaaacatttagttcaatatgccagatgccgttgtatctgcataatattagaatgacaagaagaaataactatattcatcatgacttcaattacaccaaaagttgcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="82737" stop="83671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83036" g_stop="83364" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="343"/>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E613312" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83036" e_stop="83364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATGCATGCTTTGTTGTTGGACAGGTTCAAGACTGCTGATGCTGTCGATTGGAGGAAATCTGGTGTCACTGTGCTGCCTGACCTGATCGCTACCAAAGAATGGCTTACCTCTGAAAATTCGAAATGCATTGACCTGTAAAAGTCCCGTTTGATTATTTTCTTGCCTATAATGGTAGGTAGATTTGTATTACAAGAATGGTTATGAGTTTTATGAATGTGATGAAGAAACATTTAGTTCGATATGCCAGATGCTGTTGTATCTGCATAATATTAGAATGACAAGAAGAAATAACTATACTCATCATGATTTCAATTACACCAAAAGTT</genome_strand>
        <mrna_strand>TGGATGCATGCTTTGTTGTTGGACAGGTTCAAGACTGCTGATGCTGTCGATTGGAGGAAATCTGGTGCCACTGTGCTGCCTGACTTGATCGCTACCAAAGAATGGCTTACCTCTGAAAATTTGAAATGCAGTGACCTGTGAAAGTCCTGTTTGATTATTTTCTTGCCTATAATGGTAGGTAGATTTGTATTACAAGAATGGTTATGAGTTCTATGAATGTGATGAGGAAACATTTAGTTCAATATGCCAGATGCCGTTGTATCTGCATAATATTAGAATGACAAGAAGAAATAACTATATTCATCATGACTTCAATTACACCAAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222534" ref_strand="-" ref_description="SGN-E222534 [cLEL-16-H22](-)">
      <seq>ttttttttttttttttttttttgaaattccaagtatattgattcaatgaagaaaaatagttcaacacttgagcagcccttctaagatagaaggtgctaaacagtggccaaaatctttctactgccttgcaaacttcctgccctagaactaactatacacaccatacagcttcaaacaaaggcagttgttatgcagctgattagttgtatttcagctacagacatctacaggcaatgaagtacaaaaacagaaaacatctcaaaatttagatagaaaacagccttatggattgaaatactcaagtcttgacaaaaaaaaaaaaaaaaactcgagactagttctctcctcgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="79611" stop="88773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87335" g_stop="87352" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87353" i_stop="88171" i_length="819">
            <donor d_prob="0.928" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88172" g_stop="88474" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="321" r_length="303" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E222534" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222534" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87335" e_stop="87352"/>
          <exon e_start="88172" e_stop="88474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTCTCTCTGTGGCAAGCATCATTATGCCCACATAGTATATAGTGTAACTACTTGTTGATTGAGAATTTGCTACATAAACCACATGCACAATTAGAAGCAATCTTATGTCGTGCACCTTCCTTTTGCAGTTTTATATTGAAATGATCTCGTTGTTTCCACGAAAGCATAGTGGCACTAGCTTTGTTGTGGATTCAATTGAAACTCCAAGAAGTGAGGTAAATTGCCTTGTTGCCGCTGCATATGCCTCCCTTTGTTTATGTCATCACATTGATGAATCCACTATGGCTATTAAAAGTCTAAGTGCTTTTTCGCTACTACATAGGTGGCTAATAAAAGCCCCAGTCTTGATTTGTCATGCCCCCCCAGTTAAATTTGTTAAAAGGCTAACGCTGCAAAGCTCACAGCACTATTTAGGTGAAGTTTGAATTAGCACCTAAACTCATCAGGTGAAGTTTGAATTAGCACCTAAACTCATCGTCAACAATCACATCCCCTTGTCACTGTCTTCTTATATTGACAAATAGTTGGCTTTACGTTGAGTTAAATCTAATATTCATTTCTTTGAATAAGAATATCTATTTAACACGAGCACTTTTAGTAAGGTAGTGGAGTAGTTGATTGAGAAAGCTAAAGTGTAAAAGGTGAAAGAGTGATGAGTCTAACTACGCTCTCTGTTTTCAGAATATGAGCTGCTAAATTTTATGACAACATATATCAATATACCTCATTTTTGACTTATCAAAGAGCTACTTAATTCTGTTGCATATATGATATAAACCTATTCAAATCTGGGTTCAAAACTATTTGAGTATTTAAGCAAAACAAACACATTTTGAAATTCCAAGTATATTGATTCAATGAAGAAAAATAGTTCAACACTTGAGCAGCCCTTCTAAGATAGAAGGTGCTAAACAGTGGCCAAAATCTTTCTACTGCCTTGCAAACTTCCTGCCCTAGAACTAACTATACACACCATACAGCTTCAAACAAAGGCAGTTGTTATGCAGCTGATTAGTTGTATTTCAGCTACAGACATCTACAGGCAATGAAGTACAAAAACAGAAAACATCTCAAAATTTAGATAGAAAACAGCCTTATGGATTGAAATACTCAAGTCTTGACAAATAAAAAAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAAATTCCAAGTATATTGATTCAATGAAGAAAAATAGTTCAACACTTGAGCAGCCCTTCTAAGATAGAAGGTGCTAAACAGTGGCCAAAATCTTTCTACTGCCTTGCAAACTTCCTGCCCTAGAACTAACTATACACACCATACAGCTTCAAACAAAGGCAGTTGTTATGCAGCTGATTAGTTGTATTTCAGCTACAGACATCTACAGGCAATGAAGTACAAAAACAGAAAACATCTCAAAATTTAGATAGAAAACAGCCTTATGGATTGAAATACTCAAGTCTTGACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357790" ref_strand="+" ref_description="SGN-E357790 [cTOS-24-G11]">
      <seq>tgatttagatgtatcccctgcacccagtgctttaaagaaaccaaaggtagaggtagtcgaggaagcattggataagtctgaactgaaaaaagaaaagaagaagaaaaagaagaaagaagctgatgaagctgcatcccctgatgtggagtctgtgaaaaaggaaaagaaaaagaaggacaaagagaataacgatgttgcatcctcagatgaggagaagtccgagaagaagaaaaagaaaaagaagaaagataaagaatcagagaatggtgatgttggaagtgacgatgaaggaagtaaaagcaagaagaaggataagaagaaaaagaagaataaagatgatgctcaagaggagtagaggtgaaggtttttaccccaattgagtgtgctcctatgtatgttaaaatgcacgtcatgtagttcaaaattttgccgtttattcacttgtttttgggcaggagtttgttgcagctgaagttcctggtcatagacgtgcttattagttaattagttttaccttttttatttgtcaagacttgagtatttcaatccataaggctgttttctatctaaattttgagatggtttctgtttttgtacttcattgcctgtagatgtctgtagctgaaatacaactaatcagctgcataacaactgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="89085" stop="88033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88988" g_stop="88333" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E357790" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88988" e_stop="88333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAAGATAAAGAATCAGAGAATGGTGATGTTGGAAGTGACGATGAAGGAAGTAAAAGCAAGAAGAAGGATAAGAAGAAAAAGAAGAATAAAGATGATGCTCAAGAGGAGTAGAGGTGAAGGTTTTTACCCCAATTGAGTGTGCTCCTATGTATGTTAAAATGCACGTCATGTAGTTCAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGGTCATAGACGTGCTTATTAGTTAATTAGTTTTACCTTTTTTATTTGTCAAGACTTGAGTATTTCAATCCATAAGGCTGTTTTCTATCTAAATTTTGAGATGTTTTCTGTTTTTGTACTTCATTGCCTGTAGATGTCTGTAGCTGAAATACAACTAATCAGCTGCATAACAACTGCC</genome_strand>
        <mrna_strand>TGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAAGATAAAGAATCAGAGAATGGTGATGTTGGAAGTGACGATGAAGGAAGTAAAAGCAAGAAGAAGGATAAGAAGAAAAAGAAGAATAAAGATGATGCTCAAGAGGAGTAGAGGTGAAGGTTTTTACCCCAATTGAGTGTGCTCCTATGTATGTTAAAATGCACGTCATGTAGTTCAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGGTCATAGACGTGCTTATTAGTTAATTAGTTTTACCTTTTTTATTTGTCAAGACTTGAGTATTTCAATCCATAAGGCTGTTTTCTATCTAAATTTTGAGATGGTTTCTGTTTTTGTACTTCATTGCCTGTAGATGTCTGTAGCTGAAATACAACTAATCAGCTGCATAACAACTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357349" ref_strand="+" ref_description="SGN-E357349 [cTOS-23-O20]">
      <seq>gaaaaagaagaaagaagctgatgaagctgcatcccctgatgtggagtctgtgaaaaaggaaaagaaaaagaaggacaaagagaataacgatgttgcatcctcagatgaggagaagtccgagaagaagaaaaagaaaaagaagaaagataaagaatcagagaatggtgatgttggaagtgacgatgaaggaagtaaaagcaagaagaaggataagaagaaaaagaagaataaagatgatgctcaagaggagtagaggtgaaggtttttaccccaattgagtgtgctcctatgtatgttaaaatgcacgtcatgtagttcaaaattttgccgtttattcacttgtttttgggcaggagtttgttgcagctgaagttcctggtcatagacgtgcttattagttaattagttttaccttttttatttgtcaagacttgagtatttcaatccataaggctgttttctatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="89085" stop="88118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88886" g_stop="88408" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E357349" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88886" e_stop="88408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAAGATAAAGAATCAGAGAATGGTGATGTTGGAAGTGACGATGAAGGAAGTAAAAGCAAGAAGAAGGATAAGAAGAAAAAGAAGAATAAAGATGATGCTCAAGAGGAGTAGAGGTGAAGGTTTTTACCCCAATTGAGTGTGCTCCTATGTATGTTAAAATGCACGTCATGTAGTTCAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGGTCATAGACGTGCTTATTAGTTAATTAGTTTTACCTTTTTTATTTGTCAAGACTTGAGTATTTCAATCCATAAGGCTGTTTTCTATCTAAATTTTGAGATG</genome_strand>
        <mrna_strand>GAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAAGATAAAGAATCAGAGAATGGTGATGTTGGAAGTGACGATGAAGGAAGTAAAAGCAAGAAGAAGGATAAGAAGAAAAAGAAGAATAAAGATGATGCTCAAGAGGAGTAGAGGTGAAGGTTTTTACCCCAATTGAGTGTGCTCCTATGTATGTTAAAATGCACGTCATGTAGTTCAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGGTCATAGACGTGCTTATTAGTTAATTAGTTTTACCTTTTTTATTTGTCAAGACTTGAGTATTTCAATCCATAAGGCTGTTTTCTATCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436237" ref_strand="+" ref_description="SGN-E436237 [STM-62-P19]">
      <seq>agtcgaggaagcactggagaagtctgaactgaaaaaagaaaagaagaagaaaaagaagaaagaagctgatgaagctggatcccctgatgtagagtccttgaaaaaggaaaagaaaaagaaggacaaagagaataatgatgctgcatcctcagatgaggagaagtctgagaaaaagaaaaagaagaagaagaaagacaaggaatcagagaatggtgatgttggaagtgacgacgaaggaagtaaaagcaagaagaaggagaagaagaaaaagaagaataaagatgcacaagaggagtagaggtgaaggtcttcgcctcaaatgagtgctcctatgtatgttaaaatgcatgtcatgtagttgttcaaaattttgccgtttattcacttgtttttgggcaggagtttgttgcagctgaagttcctgatcatagacgtgcttagtagttaattagttttacctttttatttgttaagacttgagtatttcaatccataaggctgttttcaatcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="89085" stop="88118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88934" g_stop="88409" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E436237" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88934" e_stop="88409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAAGATAAAGAATCAGAGAATGGTGATGTTGGAAGTGACGATGAAGGAAGTAAAAGCAAGAAGAAGGATAAGAAGAAAAAGAAGAATAAAGATGATGCTCAAGAGGAGTAGAGGTGAAGGTTTTTACCCCAATTGAGTGTGCTCCTATGTATGTTAAAATGCACGTCATGTAGTT---CAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGGTCATAGACGTGCTTATTAGTTAATTAGTTTTACCTTTTTTATTTGTCAAGACTTGAGTATTTCAATCCATAAGGCTGTTTTCTATCTAAATTTTGAGAT</genome_strand>
        <mrna_strand>AGTCGAGGAAGCACTGGAGAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGGATCCCCTGATGTAGAGTCCTTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAATGATGCTGCATCCTCAGATGAGGAGAAGTCTGAGAAAAAGAAAAAGAAGAAGAAGAAAGACAAGGAATCAGAGAATGGTGATGTTGGAAGTGACGACGAAGGAAGTAAAAGCAAGAAGAAGGAGAAGAAGAAAAAGAAGAAT-AA-A-GATGCACAAGAGGAGTAGAGGTGAAGGTCTTCGCCTCAAATGA--GTGCTCCTATGTATGTTAAAATGCATGTCATGTAGTTGTTCAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGATCATAGACGTGCTTAGTAGTTAATTAGTTTTACC-TTTTTATTTGTTAAGACTTGAGTATTTCAATCCATAAGGCTGTTTTCAATCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460400" ref_strand="+" ref_description="SGN-E460400 [cPRO-30-N24]">
      <seq>agtcgaggaagcactggagaagtctgaactgaaaaaagaaaagaagaagaaaaagaagaaagaagctgatgaagctggatcccctgatgtagagtccttgaaaaaggaaaagaaaaagaaggacaaagagaataatgatgctgcatcctcagatgaggagaagtctgagaaaaagaaaaagaagaagaagaaagacaaggaatcagagaatggtgatgttggaagtgacgacgaaggaagtaaaagcaagaagaaggagaagaagaaaaagaagaataaagatgcacaagaggagtagaggtgaaggtcttcgcctcaaatgagtgctcctatgtatgttaaaatgcatgtcatgtagttgttcaaaattttgccgtttattcacttgtttttgggcaggagtttgttgcagctgaagttcctgatcatagacgtgcttagtagttaattagttttacctttttatttgttaagacttgagtatttcaatccataaggctgttttcaatcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="89085" stop="88118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88934" g_stop="88409" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E460400" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88934" e_stop="88409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAAGATAAAGAATCAGAGAATGGTGATGTTGGAAGTGACGATGAAGGAAGTAAAAGCAAGAAGAAGGATAAGAAGAAAAAGAAGAATAAAGATGATGCTCAAGAGGAGTAGAGGTGAAGGTTTTTACCCCAATTGAGTGTGCTCCTATGTATGTTAAAATGCACGTCATGTAGTT---CAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGGTCATAGACGTGCTTATTAGTTAATTAGTTTTACCTTTTTTATTTGTCAAGACTTGAGTATTTCAATCCATAAGGCTGTTTTCTATCTAAATTTTGAGAT</genome_strand>
        <mrna_strand>AGTCGAGGAAGCACTGGAGAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGGATCCCCTGATGTAGAGTCCTTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAATGATGCTGCATCCTCAGATGAGGAGAAGTCTGAGAAAAAGAAAAAGAAGAAGAAGAAAGACAAGGAATCAGAGAATGGTGATGTTGGAAGTGACGACGAAGGAAGTAAAAGCAAGAAGAAGGAGAAGAAGAAAAAGAAGAAT-AA-A-GATGCACAAGAGGAGTAGAGGTGAAGGTCTTCGCCTCAAATGA--GTGCTCCTATGTATGTTAAAATGCATGTCATGTAGTTGTTCAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGATCATAGACGTGCTTAGTAGTTAATTAGTTTTACC-TTTTTATTTGTTAAGACTTGAGTATTTCAATCCATAAGGCTGTTTTCAATCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E598632" ref_strand="+" ref_description="SGN-E598632 [51602]">
      <seq>tttttttttaagattgaaaacagccttatggattgaaatactcaagtcttaacaaatataaaggtagaactaattaactaataagcacgtctatgatcaggaacttcagctgcaacaaactcctgccaaaacaagtgaataaaccggcaaaattttgaacaactacatgacatgcattttaacatacataggagcactcatttgaggcgaagaccttcacctctactcctcttgcgcatctttattcttctttttcttcttctccttcttcttgcttttacttccttcatcatcacttccaacatcaccattctctgattctttatctttcttcttcttctttttcttcttctcggacttctcctcatctgaggatgcagcatcattattctctttgtccttctttttcttttcctttttcaaggactctacatcaggggatccagcttcatcagcttctttcttctttttcttcttcttttcttttttcagttcagacttctctacagcttcctcgaccaactctacctttggtttctttaaagcactgggtgcaggggataccatctaaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="88118" stop="89085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88411" g_stop="88988" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="SGN-E598632" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88411" e_stop="88988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAATTTAGATAGAAAACAGCCTTATGGATTGAAATACTCAAGTCTTGACAAATAAAAAAGGTAAAACTAATTAACTAATAAGCACGTCTATGACCAGGAACTTCAGCTGCAACAAACTCCTGCCCAAAAACAAGTGAATAAA-CGGCAAAATTTTG---AACTACATGACGTGCATTTTAACATACATAGGAGCACACTCAATTGGGGTAAAAACCTTCACCTCTACTCCTCTTGAGCATCATCTTTATTCTTCTTTTTCTTCTTATCCTTCTTCTTGCTTTTACTTCCTTCATCGTCACTTCCAACATCACCATTCTCTGATTCTTTATCTTTCTTCTTTTTCTTTTTCTTCTTCTCGGACTTCTCCTCATCTGAGGATGCAACATCGTTATTCTCTTTGTCCTTCTTTTTCTTTTCCTTTTTCACAGACTCCACATCAGGGGATGCAGCTTCATCAGCTTCTTTCTTCTTTTTCTTCTTCTTTTCTTTTTTCAGTTCAGACTTATCCAATGCTTCCTCGACTACCTCTACCTTTGGTTTCTTTAAAGCACTGGGTGCAGGGGATA-CATCTAAATCA</genome_strand>
        <mrna_strand>TTTTTTTTTAAGATTGAAAACAGCCTTATGGATTGAAATACTCAAGTCTTAACAAAT-ATAAAGGTAGAACTAATTAACTAATAAGCACGTCTATGATCAGGAACTTCAGCTGCAACAAACTCCTG-CC-AAAACAAGTGAATAAACCGGCAAAATTTTGAACAACTACATGACATGCATTTTAACATACATAGGAG--CACTCATTTGAGGCGAAGACCTTCACCTCTACTCCTCTT--GC-GCATCTTTATTCTTCTTTTTCTTCTTCTCCTTCTTCTTGCTTTTACTTCCTTCATCATCACTTCCAACATCACCATTCTCTGATTCTTTATCTTTCTTCTTCTTCTTTTTCTTCTTCTCGGACTTCTCCTCATCTGAGGATGCAGCATCATTATTCTCTTTGTCCTTCTTTTTCTTTTCCTTTTTCAAGGACTCTACATCAGGGGATCCAGCTTCATCAGCTTCTTTCTTCTTTTTCTTCTTCTTTTCTTTTTTCAGTTCAGACTTCTCTACAGCTTCCTCGACCAACTCTACCTTTGGTTTCTTTAAAGCACTGGGTGCAGGGGATACCATCTAAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436238" ref_strand="-" ref_description="SGN-E436238 [STM-62-P19]">
      <seq>agtcgaggaagcactggagaagtctgaactgaaaaaagaaaagaagaagaaaaagaagaaagaagctgatgaagctggatcccctgatgtagagtccttgaaaaaggaaaagaaaaagaaggacaaagagaataatgatgctgcatcctcagatgaggagaagtctgagaaaaagaaaaagaagaagaagaaagacaaggaatcagagaatggtgatgttggaagtgacgacgaaggaagtaaaagcaagaagaaggagaagaagaaaaagaagaataaagatgcacaagaggagtagaggtgaaggtcttcgcctcaaatgagtgctcctatgtatgttaaaatgcatgtcatgtagttgttcaaaattttgccgtttattcacttgtttttgggcaggagtttgttgcagctgaagttcctgatcatagacgtgcttagtagttaattagttttacctttttatttgttaagacttgagtatttcaatccataaggctgttttcaatcttaaaaaaaaaaaaaaaaaaactcgagggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="89085" stop="88118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88934" g_stop="88419" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="532"/>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E436238" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436238" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="88934" e_stop="88419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAAGATAAAGAATCAGAGAATGGTGATGTTGGAAGTGACGATGAAGGAAGTAAAAGCAAGAAGAAGGATAAGAAGAAAAAGAAGAATAAAGATGATGCTCAAGAGGAGTAGAGGTGAAGGTTTTTACCCCAATTGAGTGTGCTCCTATGTATGTTAAAATGCACGTCATGTAGTT---CAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGGTCATAGACGTGCTTATTAGTTAATTAGTTTTACCTTTTTTATTTGTCAAGACTTGAGTATTTCAATCCATAAGGCTGTTTTCTATCTAA</genome_strand>
        <mrna_strand>AGTCGAGGAAGCACTGGAGAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGGATCCCCTGATGTAGAGTCCTTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAATGATGCTGCATCCTCAGATGAGGAGAAGTCTGAGAAAAAGAAAAAGAAGAAGAAGAAAGACAAGGAATCAGAGAATGGTGATGTTGGAAGTGACGACGAAGGAAGTAAAAGCAAGAAGAAGGAGAAGAAGAAAAAGAAGAAT-AA-A-GATGCACAAGAGGAGTAGAGGTGAAGGTCTTCGCCTCAAATGA--GTGCTCCTATGTATGTTAAAATGCATGTCATGTAGTTGTTCAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGATCATAGACGTGCTTAGTAGTTAATTAGTTTTACC-TTTTTATTTGTTAAGACTTGAGTATTTCAATCCATAAGGCTGTTTTCAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278709" ref_strand="+" ref_description="SGN-E278709 [cLER-2-E13]">
      <seq>aaaaagaagaaagataaagaatcagagaatggtgatgttggaagtgacgatgaaggaagtaaaagcaagaagaaggataagaagaaaaagaagaataaagatgatgctcaagaggagtagaggtgaaggtttttaccccaattgagtgtgctcctatgtatgttaaaatgcacgtcatgtagttcaaaattttgccgtttattcacttgtttttgggcaggagtttgttgcagctgaagttcctggtcatagacgtgcttattagttaattagttttaccttttttatttgtcaagacttgagtatttcaatccataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="89053" stop="88135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88753" g_stop="88435" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E278709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88753" e_stop="88435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAAGAAAGATAAAGAATCAGAGAATGGTGATGTTGGAAGTGACGATGAAGGAAGTAAAAGCAAGAAGAAGGATAAGAAGAAAAAGAAGAATAAAGATGATGCTCAAGAGGAGTAGAGGTGAAGGTTTTTACCCCAATTGAGTGTGCTCCTATGTATGTTAAAATGCACGTCATGTAGTTCAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGGTCATAGACGTGCTTATTAGTTAATTAGTTTTACCTTTTTTATTTGTCAAGACTTGAGTATTTCAATCCATAAG</genome_strand>
        <mrna_strand>AAAAAGAAGAAAGATAAAGAATCAGAGAATGGTGATGTTGGAAGTGACGATGAAGGAAGTAAAAGCAAGAAGAAGGATAAGAAGAAAAAGAAGAATAAAGATGATGCTCAAGAGGAGTAGAGGTGAAGGTTTTTACCCCAATTGAGTGTGCTCCTATGTATGTTAAAATGCACGTCATGTAGTTCAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGGTCATAGACGTGCTTATTAGTTAATTAGTTTTACCTTTTTTATTTGTCAAGACTTGAGTATTTCAATCCATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354479" ref_strand="+" ref_description="SGN-E354479 [cTOS-17-J6]">
      <seq>ctgatggtgctgcagttgaggttgagaagaaaaagaagaaacacaaggaagatgatgaggacgctaacaagagaaaattggatgatttagatgtatcccctgcacccagtgctttaaagaaaccaaaggtagaggtagtcgaggaagcattggataagtctgaactgaaaaaagaaaagaagaagaaaaagaagaaagaagctgatgaagctgcatcccctgatgtggagtctgtgaaaaaggaaaagaaaaagaaggacaaagagaataacgatgttgcatcctcagatgaggagaagtccgagaagaagaaaaagaaaaagaagaaagataaagaatcagagaatggtgatgttggaagtgacgatgaaggaagtaaaagcaagaagaaggataagaagaaaaagaagaataaagatgatgctcaagaggagtagaggtgaaggtttttaccccaattgagtgtgctcctatgtatgttaaaatgcacgtcatgtagttcaaaattttgccgtttattcacttgtttttgggcaggagtttgttgcagctgaagttcctggtcatagacgtgcttattagttaattagttttaccttttttatttgtcaagacttgagtatttcaatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="89085" stop="88138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89070" g_stop="88438" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E354479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89070" e_stop="88438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGTGCTGCAGTTGAGGTTGAGAAGAAAAAGAAGAAACACAAGGAAGATGATGAGGACGCTAACAAGAGAAAATTGGATGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAAGATAAAGAATCAGAGAATGGTGATGTTGGAAGTGACGATGAAGGAAGTAAAAGCAAGAAGAAGGATAAGAAGAAAAAGAAGAATAAAGATGATGCTCAAGAGGAGTAGAGGTGAAGGTTTTTACCCCAATTGAGTGTGCTCCTATGTATGTTAAAATGCACGTCATGTAGTTCAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGGTCATAGACGTGCTTATTAGTTAATTAGTTTTACCTTTTTTATTTGTCAAGACTTGAGTATTTCAATCCAT</genome_strand>
        <mrna_strand>CTGATGGTGCTGCAGTTGAGGTTGAGAAGAAAAAGAAGAAACACAAGGAAGATGATGAGGACGCTAACAAGAGAAAATTGGATGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAAGATAAAGAATCAGAGAATGGTGATGTTGGAAGTGACGATGAAGGAAGTAAAAGCAAGAAGAAGGATAAGAAGAAAAAGAAGAATAAAGATGATGCTCAAGAGGAGTAGAGGTGAAGGTTTTTACCCCAATTGAGTGTGCTCCTATGTATGTTAAAATGCACGTCATGTAGTTCAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGGTCATAGACGTGCTTATTAGTTAATTAGTTTTACCTTTTTTATTTGTCAAGACTTGAGTATTTCAATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221721" ref_strand="+" ref_description="SGN-E221721 [cLEL-10-O16](-)">
      <seq>ggcaccaggagaattggatgatttagatgtatcccctgcacccagtgctttaaagaaaccaaaggtagaggtagtcgaggaagcattggataagtctgaactgaaaaaagaaaagaagaagaaaaagaagaaagaagctgatgaagctgcatcccctgatgtggagtctgtgaaaaaggaaaaagaaaaagaaggacaaagagaataacgatgttgcatcctcagatgaggagaagtccgagaagaagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="89085" stop="88442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89007" g_stop="88742" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E221721" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89007" e_stop="88742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACAAGAGAAAATTGGATGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGG-AAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAA</genome_strand>
        <mrna_strand>GGCACCAG-GAGAATTGGATGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228712" ref_strand="+" ref_description="SGN-E228712 [cLEL-29-N10](-)">
      <seq>ggcaccaggagaattggatgatttagatgtatcccctgcacccagtgctttaaagaaaccaaaggtagaggtagtcgaggaagcattggataagtctgaactgaaaaaagaaaagaagaagaaaaagaagaaagaagctgatgaagctgcatcccctgatgtggagtctgtgaaaaaggaaaagaaaaagaagggcaaagagaataacgatgttgcatcctcagatgaggagaagtccgagaagaagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="89085" stop="88442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89007" g_stop="88742" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E228712" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89007" e_stop="88742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACAAGAGAAAATTGGATGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAA</genome_strand>
        <mrna_strand>GGCACCAG-GAGAATTGGATGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGGCAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221813" ref_strand="+" ref_description="SGN-E221813 [cLEL-10-O16](-)">
      <seq>ggcaccaggagaattggatgatttagatgtatcccctgcacccagtgctttaaagaaaccaaaggtagaggtagtcgaggaagcattggataagtctgaactgaaaaaagaaaagaagaagaaaaagaagaaagaagctgatgaagctgcatcccctgatgtggagtctgtgaaaaaggaaaagaaaaagaaggacaaagagaataacgatgttgcatcctcagatgaggagaagtccgagaagaagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="89085" stop="88442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89007" g_stop="88742" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E221813" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89007" e_stop="88742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACAAGAGAAAATTGGATGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAA</genome_strand>
        <mrna_strand>GGCACCAG-GAGAATTGGATGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229192" ref_strand="+" ref_description="SGN-E229192 [cLEL-29-N10](-)">
      <seq>ggcaccaggagaattggatgatttagatgtatcccctgcacccagtgctttaaagaaaccaaaggtagaggtagtcgaggaagcattggataagtctgaactgaaaaaagaaaagaagaagaaaaagaagaaagaagctgatgaagctgcatcccctgatgtggagtctgtgaaaaaggaaaagaaaaagaaggacaaagagaataacgatgttgcatcctcagatgaggagaagtccgagaagaagaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="89085" stop="88442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89007" g_stop="88742" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="SGN-E229192" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89007" e_stop="88742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACAAGAGAAAATTGGATGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAA</genome_strand>
        <mrna_strand>GGCACCAG-GAGAATTGGATGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>105</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="751" PGL_stop="279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="751" e_stop="279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="751" e_stop="279" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="751" stop="279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTCAGGGAACTGTTTTGGATGGCCATGCACTTATATTGCAACTTTGTCACACTAAGAAGGACCATTTACCAAAGAGAGCTGAGAATGACAAGAGTTCAACTAAGTTGCTTGTTAGGAATGTTGCTTTTGAGGCAACTGAAAAGGATCTCAGGCAATTATTCAGTCCATTCGGGCAGGTACATCCTCTTAACTATTGGTAACATAGAGTGATACTATGTAGTAAAAAGGTGATACTAGGTTTCCCTGTGCTGGAAGCACCAAAGGTAGTTGAGGATAAATATGTCTGCGAGGCACAAGCATGCATGATATCCTTGTACAGTTTCATTTTGATTCCACGTGAGACTTTTTTGTGTGGAACTCATAAAATTGCACTTATGCTGATGATCTGTTGGTCTGAATTGTGAAAACTGAATTTCACCTGATTAATTATTGTTGCTGTTATTTTAAAATGGTGGTATCTGCGTCAGTTTG</gDNA_template>
            <first_frame> H  S  G  N  C  F  G  W  P  C  T  Y  I  A  T  L  S  H  *  E  G  P  F  T  K  E  S  *  E  *  Q  E  F  N  *  V  A  C  *  E  C  C  F  *  G  N  *  K  G  S  Q  A  I  I  Q  S  I  R  A  G  T  S  S  *  L  L  V  T  *  S  D  T  M  *  *  K  G  D  T  R  F  P  C  A  G  S  T  K  G  S  *  G  *  I  C  L  R  G  T  S  M  H  D  I  L  V  Q  F  H  F  D  S  T  *  D  F  F  V  W  N  S  *  N  C  T  Y  A  D  D  L  L  V  *  I  V  K  T  E  F  H  L  I  N  Y  C  C  C  Y  F  K  M  V  V  S  A  S  V   </first_frame>
            <second_frame>  I  Q  G  T  V  L  D  G  H  A  L  I  L  Q  L  C  H  T  K  K  D  H  L  P  K  R  A  E  N  D  K  S  S  T  K  L  L  V  R  N  V  A  F  E  A  T  E  K  D  L  R  Q  L  F  S  P  F  G  Q  V  H  P  L  N  Y  W  *  H  R  V  I  L  C  S  K  K  V  I  L  G  F  P  V  L  E  A  P  K  V  V  E  D  K  Y  V  C  E  A  Q  A  C  M  I  S  L  Y  S  F  I  L  I  P  R  E  T  F  L  C  G  T  H  K  I  A  L  M  L  M  I  C  W  S  E  L  *  K  L  N  F  T  *  L  I  I  V  A  V  I  L  K  W  W  Y  L  R  Q  F  </second_frame>
            <third_frame>   F  R  E  L  F  W  M  A  M  H  L  Y  C  N  F  V  T  L  R  R  T  I  Y  Q  R  E  L  R  M  T  R  V  Q  L  S  C  L  L  G  M  L  L  L  R  Q  L  K  R  I  S  G  N  Y  S  V  H  S  G  R  Y  I  L  L  T  I  G  N  I  E  *  Y  Y  V  V  K  R  *  Y  *  V  S  L  C  W  K  H  Q  R  *  L  R  I  N  M  S  A  R  H  K  H  A  *  Y  P  C  T  V  S  F  *  F  H  V  R  L  F  C  V  E  L  I  K  L  H  L  C  *  *  S  V  G  L  N  C  E  N  *  I  S  P  D  *  L  L  L  L  L  F  *  N  G  G  I  C  V  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="749" stop="540"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRELFWMAMHLYCNFVTLRRTIYQRELRMTRVQLSCLLGMLLLRQLKRISGNYSVHSGRYILLTIGNIE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="549" stop="346"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRVILCSKKVILGFPVLEAPKVVEDKYVCEAQACMISLYSFILIPRETFLCGTHKIALMLMICWSEL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="750" stop="550"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQGTVLDGHALILQLCHTKKDHLPKRAENDKSSTKLLVRNVAFEATEKDLRQLFSPFGQVHPLNYW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5123" PGL_stop="4604"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5123" e_stop="4838"/>
            <exon e_start="4711" e_stop="4604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.998" e_score="0.962"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="5123" e_stop="4838" e_length="286"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.998">
            <gDNA_intron_boundary i_start="4837" i_stop="4712" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="4711" e_stop="4604" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5123" stop="4838"/>
              <exon start="4711" stop="4604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5123" stop="4838"/>
              <exon start="4711" stop="4707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5108" stop="4944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGATACGGATTATTTCAAAAGTAGAGTGAGGAAAGATTGGTCTGATTCAGAAAGTAGTGAAGACGATGGTAGTGATAATGAAAGTGACAAGAGCAGTGAAGATGCAAATGCTGGTAATATCCTTGAACCTGATGATACAGAGGAATTTTTGAGTGATGGTCTCACCAGATCTAACAATGAGGCAGCGCTTGAGCTTGTTGACCCTTCATCAAGTGTTAAGGACGAAATAGAAGAAGATCTGGAGAGCGGACGATTATTTGTTCGTAATCTTCCATACACCACTAC : GGAAGAGGAGCTGGAAGAACACTTTAGAGCATTTGGCAATGTCTCACAGGTTCATATTGTTGTTGACAAAGATACAAAGCGGTCCAAAGGAATTGCATATGTTCTCTA</gDNA_template>
            <first_frame> P  I  R  I  I  S  K  V  E  *  G  K  I  G  L  I  Q  K  V  V  K  T  M  V  V  I  M  K  V  T  R  A  V  K  M  Q  M  L  V  I  S  L  N  L  M  I  Q  R  N  F  *  V  M  V  S  P  D  L  T  M  R  Q  R  L  S  L  L  T  L  H  Q  V  L  R  T  K  *  K  K  I  W  R  A  D  D  Y  L  F  V  I  F  H  T  P  L   : R  K  R  S  W  K  N  T  L  E  H  L  A  M  S  H  R  F  I  L  L  L  T  K  I  Q  S  G  P  K  E  L  H  M  F  S  </first_frame>
            <second_frame>  R  Y  G  L  F  Q  K  *  S  E  E  R  L  V  *  F  R  K  *  *  R  R  W  *  *  *  *  K  *  Q  E  Q  *  R  C  K  C  W  *  Y  P  *  T  *  *  Y  R  G  I  F  E  *  W  S  H  Q  I  *  Q  *  G  S  A  *  A  C  *  P  F  I  K  C  *  G  R  N  R  R  R  S  G  E  R  T  I  I  C  S  *  S  S  I  H  H  Y  :  G  R  G  A  G  R  T  L  *  S  I  W  Q  C  L  T  G  S  Y  C  C  *  Q  R  Y  K  A  V  Q  R  N  C  I  C  S  L </second_frame>
            <third_frame>   D  T  D  Y  F  K  S  R  V  R  K  D  W  S  D  S  E  S  S  E  D  D  G  S  D  N  E  S  D  K  S  S  E  D  A  N  A  G  N  I  L  E  P  D  D  T  E  E  F  L  S  D  G  L  T  R  S  N  N  E  A  A  L  E  L  V  D  P  S  S  S  V  K  D  E  I  E  E  D  L  E  S  G  R  L  F  V  R  N  L  P  Y  T  T  T :   E  E  E  L  E  E  H  F  R  A  F  G  N  V  S  Q  V  H  I  V  V  D  K  D  T  K  R  S  K  G  I  A  Y  V  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5121" stop="4838"/>
                    <exon start="4711" stop="4606"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTDYFKSRVRKDWSDSESSEDDGSDNESDKSSEDANAGNILEPDDTEEFLSDGLTRSNNEAALELVDPSSSVKDEIEEDLESGRLFVRNLPYTTTEEELEEHFRAFGNVSQVHIVVDKDTKRSKGIAYVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="8043" PGL_stop="7891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8043" e_stop="7891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="8043" e_stop="7891" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8043" stop="7891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTATGTTGTATAAAGTTAGAGAAAATTGTATTTCACTACAATTGTATAATTTGTAATT</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  Y  V  V  *  S  *  R  K  L  Y  F  T  T  I  V  *  F  V  I </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  L  A  L  Y  K  N  R  N  T  I  Y  T  L  M  L  Y  K  V  R  E  N  C  I  S  L  Q  L  Y  N  L  *   </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  S  L  Y  T  K  T  E  T  Q  Y  I  H  L  C  C  I  K  L  E  K  I  V  F  H  Y  N  C  I  I  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0073G04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="12089" PGL_stop="12658"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12089" e_stop="12658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="12089" e_stop="12658" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12089" stop="12658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12089" stop="12474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470072" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCACCATCTCTTCTCTCTCGTTTCACTGCTAATTATTTGCCTTTAACATCATCGTATTCTTCTTCTTCTCCTCATGCCCAAATGGAACCCACAACAAGCATAACTGCAGCAACTTTTCTGACCCAAGAAGAGCTTACACAAATCAATCTACTAATCCCACGTTTGTGCTCTTCAAATCACCTCAAAGAAGCTGCTAATCTCATCACAACAGCATTTCTCACAAACCCATCTTTAGAATCAATTTCTGTTTCCATTTTCATTCACAGACTCTCTCTTGAACCTGACCTTACACAACCCATGTACTTCCTCAATCGCCTCAAGTACACCCCAAAGGCTCAATCTTTTCTATTACCCATTTGTAAAATGTTGGTTTCTTTGTACTTTAGGAACAGGGAGGCTAAGAAAGGTTTAAAGATTTTTCATTGGGTGTCCAGGCCTGATTTCCCTTGTCCTGTAGATTATGGATTGTGTGCTATTTTGGTGAACGGGTTTTGCAAGAATGATATGGTTGTGGAGGGGTTGAAGGTTTTGAGGATGATGGTAGTTGGGAATTTGAAGGTTGGGGGTG</gDNA_template>
            <first_frame> I  H  H  L  F  S  L  V  S  L  L  I  I  C  L  *  H  H  R  I  L  L  L  L  L  M  P  K  W  N  P  Q  Q  A  *  L  Q  Q  L  F  *  P  K  K  S  L  H  K  S  I  Y  *  S  H  V  C  A  L  Q  I  T  S  K  K  L  L  I  S  S  Q  Q  H  F  S  Q  T  H  L  *  N  Q  F  L  F  P  F  S  F  T  D  S  L  L  N  L  T  L  H  N  P  C  T  S  S  I  A  S  S  T  P  Q  R  L  N  L  F  Y  Y  P  F  V  K  C  W  F  L  C  T  L  G  T  G  R  L  R  K  V  *  R  F  F  I  G  C  P  G  L  I  S  L  V  L  *  I  M  D  C  V  L  F  W  *  T  G  F  A  R  M  I  W  L  W  R  G  *  R  F  *  G  *  W  *  L  G  I  *  R  L  G  V </first_frame>
            <second_frame>  F  T  I  S  S  L  S  F  H  C  *  L  F  A  F  N  I  I  V  F  F  F  F  S  S  C  P  N  G  T  H  N  K  H  N  C  S  N  F  S  D  P  R  R  A  Y  T  N  Q  S  T  N  P  T  F  V  L  F  K  S  P  Q  R  S  C  *  S  H  H  N  S  I  S  H  K  P  I  F  R  I  N  F  C  F  H  F  H  S  Q  T  L  S  *  T  *  P  Y  T  T  H  V  L  P  Q  S  P  Q  V  H  P  K  G  S  I  F  S  I  T  H  L  *  N  V  G  F  F  V  L  *  E  Q  G  G  *  E  R  F  K  D  F  S  L  G  V  Q  A  *  F  P  L  S  C  R  L  W  I  V  C  Y  F  G  E  R  V  L  Q  E  *  Y  G  C  G  G  V  E  G  F  E  D  D  G  S  W  E  F  E  G  W  G   </second_frame>
            <third_frame>   S  P  S  L  L  S  R  F  T  A  N  Y  L  P  L  T  S  S  Y  S  S  S  S  P  H  A  Q  M  E  P  T  T  S  I  T  A  A  T  F  L  T  Q  E  E  L  T  Q  I  N  L  L  I  P  R  L  C  S  S  N  H  L  K  E  A  A  N  L  I  T  T  A  F  L  T  N  P  S  L  E  S  I  S  V  S  I  F  I  H  R  L  S  L  E  P  D  L  T  Q  P  M  Y  F  L  N  R  L  K  Y  T  P  K  A  Q  S  F  L  L  P  I  C  K  M  L  V  S  L  Y  F  R  N  R  E  A  K  K  G  L  K  I  F  H  W  V  S  R  P  D  F  P  C  P  V  D  Y  G  L  C  A  I  L  V  N  G  F  C  K  N  D  M  V  V  E  G  L  K  V  L  R  M  M  V  V  G  N  L  K  V  G  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12091" stop="12657"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSLLSRFTANYLPLTSSYSSSSPHAQMEPTTSITAATFLTQEELTQINLLIPRLCSSNHLKEAANLITTAFLTNPSLESISVSIFIHRLSLEPDLTQPMYFLNRLKYTPKAQSFLLPICKMLVSLYFRNREAKKGLKIFHWVSRPDFPCPVDYGLCAILVNGFCKNDMVVEGLKVLRMMVVGNLKVGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="15592" PGL_stop="17085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15592" e_stop="15775"/>
            <exon e_start="15871" e_stop="16089"/>
            <exon e_start="16983" e_stop="17085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15592" e_stop="15775" e_length="184"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15776" i_stop="15870" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15871" e_stop="16089" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="16090" i_stop="16982" i_length="893"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="16983" e_stop="17085" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15592" stop="15775"/>
              <exon start="15871" stop="16089"/>
              <exon start="16983" stop="17085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15602" stop="15775"/>
              <exon start="15871" stop="16089"/>
              <exon start="16983" stop="17085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTGGGCACTCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAG : CTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAG : TTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTG</gDNA_template>
            <first_frame> P  W  A  L  S  H  *  Q  *  S  G  *  R  F  K  N  P  N  S  I  D  V  *  I  F  F  T  E  I  P  L  N  F  *  L  T  L  K  N  G  F  F  H  H  S  N  S  A  T  D  E  L  L  P  P  A  R  A  S  P  S   : A  M  E  R  S  A  A  W  M  C  C  I  I  A  E  T  T  Y  F  G  M  *  *  *  Q  E  K  Q  T  F  E  S  F  F  K  C  *  W  C  C  Y  F  F  H  F  G  G  L  *  F  F  S  V  S  F  C  I  S  S  F  Y  T  P  F  S  T  P  R  Y  S  R  F  S   : V  G  T  G  R  S  *  F  L  Q  N  R  I  C  *  K  F  S  S  L  R  D  *  I  Q  G  G  T  R  W  V  W  S  V   </first_frame>
            <second_frame>  P  G  H  S  L  T  D  S  R  V  D  N  V  S  R  T  Q  I  P  S  M  Y  E  S  S  L  L  K  F  H  *  I  F  S  S  L  S  R  M  V  S  S  T  I  L  I  Q  Q  P  T  N  F  F  H  Q  P  E  L  H  H  Q  :  L  W  R  G  L  Q  H  G  C  V  A  S  L  Q  K  Q  P  I  L  V  C  N  S  N  K  R  N  R  P  L  R  V  S  S  S  A  N  G  A  V  T  S  S  T  L  E  A  Y  D  S  S  P  S  P  S  A  F  P  L  F  T  P  P  S  Q  P  Q  D  T  P  A  S  Q  :  L  E  L  A  D  P  D  F  Y  K  I  G  Y  V  R  S  F  R  A  Y  G  I  E  F  R  E  G  P  D  G  Y  G  V  F  </second_frame>
            <third_frame>   L  G  T  L  S  L  T  V  E  W  I  T  F  Q  E  P  K  F  H  R  C  M  N  L  L  Y  *  N  S  T  K  F  L  A  H  S  Q  E  W  F  L  P  P  F  *  F  S  N  R  R  T  S  S  T  S  Q  S  F  T  I  S :   Y  G  E  V  C  S  M  D  V  L  H  H  C  R  N  N  L  F  W  Y  V  I  V  T  R  E  T  D  L  *  E  F  L  Q  V  L  M  V  L  L  L  L  P  L  W  R  P  M  I  L  L  R  L  L  L  H  F  L  F  L  H  P  L  L  N  P  K  I  L  P  L  L  S :   W  N  W  Q  I  L  I  S  T  K  *  D  M  L  E  V  F  E  P  T  G  L  N  S  G  R  D  Q  M  G  M  E  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15686" stop="15775"/>
                    <exon start="15871" stop="16089"/>
                    <exon start="16983" stop="17084"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSSLSRMVSSTILIQQPTNFFHQPELHHQLWRGLQHGCVASLQKQPILVCNSNKRNRPLRVSSSANGAVTSSTLEAYDSSPSPSAFPLFTPPSQPQDTPASQLELADPDFYKIGYVRSFRAYGIEFREGPDGYGVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="17699" PGL_stop="18335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17699" e_stop="17722"/>
            <exon e_start="17967" e_stop="18335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.940" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17699" e_stop="17722" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.940">
            <gDNA_intron_boundary i_start="17723" i_stop="17966" i_length="244"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="17967" e_stop="18335" e_length="369"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17699" stop="17722"/>
              <exon start="17967" stop="18335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17997" stop="18335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224862" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATCAATTCAACCAATCCCGAG : ACAGATTCGGACTTGAGGTTGGCGTGCCTTCTTTTATATGCTTTTGATTGCAAGGACAACTTTTGGCAGCTATACGGAGACTTCTTGCCTAGTGCTGATGAATGCACTAGCTTTCTTCTAGCTACCGAGGTCTGGATATGAGTATCATCCAAATTTCAGTGCATTCAATTAATGTAATATTTTGTGGAAGATTCTATAGAAAATGCTATGCATTCACAAAATTATTCTGCACTTTGTTATGGTGTTCTGCTGAGGTTCAAGTTTGAGTAACTCGAAATGTGAATTAGAAAAGCTTTTGTGATATTCACACTGTTATGTGACCTTTGCTATTAGTGGGTTCTAATTTATAACAAAAGTTTCTTCGACTGA</gDNA_template>
            <first_frame> I  I  N  S  T  N  P  E  :  T  D  S  D  L  R  L  A  C  L  L  L  Y  A  F  D  C  K  D  N  F  W  Q  L  Y  G  D  F  L  P  S  A  D  E  C  T  S  F  L  L  A  T  E  V  W  I  *  V  S  S  K  F  Q  C  I  Q  L  M  *  Y  F  V  E  D  S  I  E  N  A  M  H  S  Q  N  Y  S  A  L  C  Y  G  V  L  L  R  F  K  F  E  *  L  E  M  *  I  R  K  A  F  V  I  F  T  L  L  C  D  L  C  Y  *  W  V  L  I  Y  N  K  S  F  F  D  * </first_frame>
            <second_frame>  L  S  I  Q  P  I  P  R :   Q  I  R  T  *  G  W  R  A  F  F  Y  M  L  L  I  A  R  T  T  F  G  S  Y  T  E  T  S  C  L  V  L  M  N  A  L  A  F  F  *  L  P  R  S  G  Y  E  Y  H  P  N  F  S  A  F  N  *  C  N  I  L  W  K  I  L  *  K  M  L  C  I  H  K  I  I  L  H  F  V  M  V  F  C  *  G  S  S  L  S  N  S  K  C  E  L  E  K  L  L  *  Y  S  H  C  Y  V  T  F  A  I  S  G  F  *  F  I  T  K  V  S  S  T   </second_frame>
            <third_frame>   Y  Q  F  N  Q  S  R   : D  R  F  G  L  E  V  G  V  P  S  F  I  C  F  *  L  Q  G  Q  L  L  A  A  I  R  R  L  L  A  *  C  *  *  M  H  *  L  S  S  S  Y  R  G  L  D  M  S  I  I  Q  I  S  V  H  S  I  N  V  I  F  C  G  R  F  Y  R  K  C  Y  A  F  T  K  L  F  C  T  L  L  W  C  S  A  E  V  Q  V  *  V  T  R  N  V  N  *  K  S  F  C  D  I  H  T  V  M  *  P  L  L  L  V  G  S  N  L  *  Q  K  F  L  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0073G04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="18817" PGL_stop="20776"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18817" e_stop="18957"/>
            <exon e_start="20667" e_stop="20776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.681" acc_prob="0.166" e_score="0.972"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="18817" e_stop="18957" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.681" acc_prob="0.166">
            <gDNA_intron_boundary i_start="18958" i_stop="20666" i_length="1709"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="20667" e_stop="20776" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18817" stop="18957"/>
              <exon start="20667" stop="20776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429382" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCTCTCAAAATTAAGCGTCTTGCTCAGGATCCTGAGAGATTTATTTGGGCAATGAGTATAGCACAATCTCGATGCATCAGCATGCAAACAAGAATTGGTTCACTGGTTCAAGAAGCAAATATGTTGGTACCTTATGCTG : ACATGATGAATCATTCTTTTCAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGCATGCTGGAGGTGATGATAAATGCAGGACAAAAAATTAGAAAAGGAGATGAG</gDNA_template>
            <first_frame> Y  L  S  K  L  S  V  L  L  R  I  L  R  D  L  F  G  Q  *  V  *  H  N  L  D  A  S  A  C  K  Q  E  L  V  H  W  F  K  K  Q  I  C  W  Y  L  M  L  :  T  *  *  I  I  L  F  S  Q  I  A  F  S  I  G  A  S  R  T  A  C  W  R  *  *  *  M  Q  D  K  K  L  E  K  E  M   </first_frame>
            <second_frame>  T  S  Q  N  *  A  S  C  S  G  S  *  E  I  Y  L  G  N  E  Y  S  T  I  S  M  H  Q  H  A  N  K  N  W  F  T  G  S  R  S  K  Y  V  G  T  L  C  * :   H  D  E  S  F  F  S  A  K  L  L  F  P  L  A  L  Q  G  P  H  A  G  G  D  D  K  C  R  T  K  N  *  K  R  R  *  </second_frame>
            <third_frame>   P  L  K  I  K  R  L  A  Q  D  P  E  R  F  I  W  A  M  S  I  A  Q  S  R  C  I  S  M  Q  T  R  I  G  S  L  V  Q  E  A  N  M  L  V  P  Y  A   : D  M  M  N  H  S  F  Q  P  N  C  F  F  H  W  R  F  K  D  R  M  L  E  V  M  I  N  A  G  Q  K  I  R  K  G  D  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18819" stop="18957"/>
                    <exon start="20667" stop="20776"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLKIKRLAQDPERFIWAMSIAQSRCISMQTRIGSLVQEANMLVPYADMMNHSFQPNCFFHWRFKDRMLEVMINAGQKIRKGDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="22194" PGL_stop="23490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22194" e_stop="22274"/>
            <exon e_start="22368" e_stop="22568"/>
            <exon e_start="22905" e_stop="22947"/>
            <exon e_start="23052" e_stop="23490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.282" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22194" e_stop="22274" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.282" acc_prob="0.906">
            <gDNA_intron_boundary i_start="22275" i_stop="22367" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22368" e_stop="22568" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="22569" i_stop="22904" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22905" e_stop="22947" e_length="43"/>
          </exon>
          <intron i_serial="3" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22948" i_stop="23051" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="23052" e_stop="23490" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22194" stop="22274"/>
              <exon start="22368" stop="22568"/>
              <exon start="22905" stop="22947"/>
              <exon start="23052" stop="23455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22194" stop="22274"/>
              <exon start="22368" stop="22568"/>
              <exon start="22905" stop="22947"/>
              <exon start="23052" stop="23180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22210" stop="22274"/>
              <exon start="22368" stop="22568"/>
              <exon start="22905" stop="22947"/>
              <exon start="23052" stop="23490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371819" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA : CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG : ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA : GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACCAATTCCACT</gDNA_template>
            <first_frame> P  E  M  P  K  F  I  *  T  P  F  Y  R  S  L  T  Y  L  A  S  L  E  N  I  T  T  T  :  Q  V  S  Y  Q  M  M  E  T  D  S  S  M  E  Q  *  *  Q  P  Q  E  R  C  P  L  G  Q  M  E  I  S  L  Q  F  Q  V  *  R  G  K  Q  *  R  S  C  K  K  N  A  T  R  C  L  Q  N  F  P  Q  L  L  T  K  T  R  K  S  *  :  I  R  C  L  N  A  G  E  H  S  K  Q  Q  *   : S  I  D  Y  I  G  N  Y  *  *  R  R  L  Y  R  P  W  T  F  T  K  T  G  F  C  S  K  H  E  *  Q  Q  E  L  K  Q  S  L  P  E  I  M  *  P  *  K  T  G  V  K  I  M  V  P  F  Q  L  C  R  K  L  Y  L  S  Q  *  L  L  Q  H  F  E  G  F  C  W  G  W  V  *  E  V  A  S  N  G  V  *  V  E  N  D  L  Y  H  *  F  W  K  D  M  K  *  R  K  M  R  S  S  L  *  K  S  *  *  K  *  R  I  A  L  V  D  M  F  D  N  K  *  K  G  S  F  A  *  M  K  Y  M  N  S  L  *  P  I  P   </first_frame>
            <second_frame>  R  R  C  Q  N  S  S  R  H  L  F  I  G  L  *  H  I  W  P  P  W  R  I  L  P  Q  H :   R  *  A  I  K  *  W  R  Q  I  R  R  W  S  N  N  S  S  R  K  N  V  A  H  L  V  R  W  R  S  P  S  N  S  K  S  R  E  E  S  S  E  G  A  A  R  R  M  P  P  D  A  C  R  I  S  H  N  F  *  R  R  P  E  N  P  R :   F  D  A  *  M  Q  E  N  I  R  S  S  N  K  :  V  *  I  T  S  E  I  T  D  R  E  G  Y  T  G  L  G  H  L  P  R  Q  D  S  V  L  N  M  N  N  S  R  S  *  S  N  L  Y  Q  K  S  C  S  H  R  R  R  A  S  R  L  W  F  H  F  S  Y  A  E  S  F  I  Y  H  N  S  F  C  N  I  L  R  A  F  V  G  G  G  C  R  K  *  L  V  M  V  Y  R  W  K  M  T  Y  T  I  S  F  G  K  I  *  S  E  E  K  *  E  V  L  Y  R  N  H  D  E  N  E  G  *  L  W  W  I  C  L  I  T  S  R  R  A  L  L  H  E  *  N  I  *  I  L  F  N  Q  F  H  </second_frame>
            <third_frame>   G  D  A  K  I  H  L  D  T  F  L  S  V  F  N  I  S  G  L  P  G  E  Y  Y  H  N   : T  G  K  L  S  N  D  G  D  R  F  V  D  G  A  I  I  A  A  A  R  T  L  P  T  W  S  D  G  D  L  P  P  I  P  S  L  E  R  K  A  V  K  E  L  Q  E  E  C  H  Q  M  L  A  E  F  P  T  T  S  D  E  D  Q  K  I  L   : D  S  M  P  E  C  R  R  T  F  E  A  A  I  K :   Y  R  L  H  R  K  L  L  I  E  K  V  I  Q  A  L  D  I  Y  Q  D  R  I  L  F  *  T  *  I  T  A  G  V  E  A  I  F  T  R  N  H  V  A  I  E  D  G  R  Q  D  Y  G  S  I  S  A  M  Q  K  A  L  S  I  T  I  A  F  A  T  F  *  G  L  L  L  G  V  G  V  G  S  S  *  *  W  C  I  G  G  K  *  L  I  P  L  V  L  E  R  Y  E  V  K  K  N  E  K  F  S  I  E  I  M  M  K  M  K  D  S  F  G  G  Y  V  *  *  Q  V  E  G  L  F  C  M  N  E  I  Y  E  F  S  L  T  N  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22196" stop="22274"/>
                    <exon start="22368" stop="22568"/>
                    <exon start="22905" stop="22947"/>
                    <exon start="23052" stop="23130"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDAKIHLDTFLSVFNISGLPGEYYHNTGKLSNDGDRFVDGAIIAAARTLPTWSDGDLPPIPSLERKAVKELQEECHQMLAEFPTTSDEDQKILDSMPECRRTFEAAIKYRLHRKLLIEKVIQALDIYQDRILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="26076" PGL_stop="26227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26076" e_stop="26227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="26076" e_stop="26227" e_length="152"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26076" stop="26227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400046" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTCTCATTTATGTTGTTTTTAATCTTTTTCTTGAAATTAGTTCTGAAGTTCAATAATCAGCAATCAAGAATGCTATTTATGATGTTTTAAATTGTTATTTGAGTTCCAAATTCATGGTTTTGCTCTTTCCATTATCTTGTCTCCAGTTAT</gDNA_template>
            <first_frame> V  S  H  L  C  C  F  *  S  F  S  *  N  *  F  *  S  S  I  I  S  N  Q  E  C  Y  L  *  C  F  K  L  L  F  E  F  Q  I  H  G  F  A  L  S  I  I  L  S  P  V   </first_frame>
            <second_frame>  S  L  I  Y  V  V  F  N  L  F  L  E  I  S  S  E  V  Q  *  S  A  I  K  N  A  I  Y  D  V  L  N  C  Y  L  S  S  K  F  M  V  L  L  F  P  L  S  C  L  Q  L  </second_frame>
            <third_frame>   L  S  F  M  L  F  L  I  F  F  L  K  L  V  L  K  F  N  N  Q  Q  S  R  M  L  F  M  M  F  *  I  V  I  *  V  P  N  S  W  F  C  S  F  H  Y  L  V  S  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0073G04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="29379" PGL_stop="30157"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29379" e_stop="30157"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="29379" e_stop="30157" e_length="779"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29379" stop="30101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29385" stop="30157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29411" stop="30059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29411" stop="29800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29511" stop="29824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAAATTTAGTGCATGCCTATCTTGCAAGGCGTGCTCTTGATTACCTGATTGGGTTCAACATTTCTCCACTTCTGTGGAGGAAATTACCTGGTTGTCAATCTGCTGGTCGGGTTCAGTCTGCTGCCCTATCACTTATATGTGACAGAGAAATGGAAATTGATGGATTCAAACCACAGGAGTATTGGACAGTCCTGGTTGAATTTAAGAAGAACAAAAACCTAGATTTAGCCAATAACTTTTTGTCGTCCCATTTGACCCATTTTGATACCAAGAAATTAAGTCAGTTCTCTGTTAGCTCTCATACCGAAGCAATGGAAATTGAAGGGAAGATAAATTCATCAAACTTTGAAGTTCTTAGCTCTAAGATAACCAAAAAGCAGAGAAACCCCTCTCCTCCTTATATAACATCAACACTTCAGCAAGATGCCGCAAACAAATTGGACTTTTCATCAACATATACGATGAAACTTGCACAAAAGCTATATGAGGGAATCCAGTTATCTGATGGCAAGTCAACAGGATTGATAACTTACATCAGAACAGATGGCTTGCACATTTCAGATGAAGCTACCAAGGACATTCAATCCTATATCAGTGAAAGGTATGGACAGAATTTTGCATCAAAGAATGGTCGCAAATACTTCAAGAAGGTGAAGAATGCTCAAGAGGCCCATGAAGCTATTAGACCCACTGATATCCGAAGGTTACCCTCAAAGCTTGTCGGGGTGCTGGATGATGATGCACTTAAGCTATACAAACTTATATGGTCCCGTACCA</gDNA_template>
            <first_frame> R  K  F  S  A  C  L  S  C  K  A  C  S  *  L  P  D  W  V  Q  H  F  S  T  S  V  E  E  I  T  W  L  S  I  C  W  S  G  S  V  C  C  P  I  T  Y  M  *  Q  R  N  G  N  *  W  I  Q  T  T  G  V  L  D  S  P  G  *  I  *  E  E  Q  K  P  R  F  S  Q  *  L  F  V  V  P  F  D  P  F  *  Y  Q  E  I  K  S  V  L  C  *  L  S  Y  R  S  N  G  N  *  R  E  D  K  F  I  K  L  *  S  S  *  L  *  D  N  Q  K  A  E  K  P  L  S  S  L  Y  N  I  N  T  S  A  R  C  R  K  Q  I  G  L  F  I  N  I  Y  D  E  T  C  T  K  A  I  *  G  N  P  V  I  *  W  Q  V  N  R  I  D  N  L  H  Q  N  R  W  L  A  H  F  R  *  S  Y  Q  G  H  S  I  L  Y  Q  *  K  V  W  T  E  F  C  I  K  E  W  S  Q  I  L  Q  E  G  E  E  C  S  R  G  P  *  S  Y  *  T  H  *  Y  P  K  V  T  L  K  A  C  R  G  A  G  *  *  C  T  *  A  I  Q  T  Y  M  V  P  Y   </first_frame>
            <second_frame>  A  N  L  V  H  A  Y  L  A  R  R  A  L  D  Y  L  I  G  F  N  I  S  P  L  L  W  R  K  L  P  G  C  Q  S  A  G  R  V  Q  S  A  A  L  S  L  I  C  D  R  E  M  E  I  D  G  F  K  P  Q  E  Y  W  T  V  L  V  E  F  K  K  N  K  N  L  D  L  A  N  N  F  L  S  S  H  L  T  H  F  D  T  K  K  L  S  Q  F  S  V  S  S  H  T  E  A  M  E  I  E  G  K  I  N  S  S  N  F  E  V  L  S  S  K  I  T  K  K  Q  R  N  P  S  P  P  Y  I  T  S  T  L  Q  Q  D  A  A  N  K  L  D  F  S  S  T  Y  T  M  K  L  A  Q  K  L  Y  E  G  I  Q  L  S  D  G  K  S  T  G  L  I  T  Y  I  R  T  D  G  L  H  I  S  D  E  A  T  K  D  I  Q  S  Y  I  S  E  R  Y  G  Q  N  F  A  S  K  N  G  R  K  Y  F  K  K  V  K  N  A  Q  E  A  H  E  A  I  R  P  T  D  I  R  R  L  P  S  K  L  V  G  V  L  D  D  D  A  L  K  L  Y  K  L  I  W  S  R  T  </second_frame>
            <third_frame>   Q  I  *  C  M  P  I  L  Q  G  V  L  L  I  T  *  L  G  S  T  F  L  H  F  C  G  G  N  Y  L  V  V  N  L  L  V  G  F  S  L  L  P  Y  H  L  Y  V  T  E  K  W  K  L  M  D  S  N  H  R  S  I  G  Q  S  W  L  N  L  R  R  T  K  T  *  I  *  P  I  T  F  C  R  P  I  *  P  I  L  I  P  R  N  *  V  S  S  L  L  A  L  I  P  K  Q  W  K  L  K  G  R  *  I  H  Q  T  L  K  F  L  A  L  R  *  P  K  S  R  E  T  P  L  L  L  I  *  H  Q  H  F  S  K  M  P  Q  T  N  W  T  F  H  Q  H  I  R  *  N  L  H  K  S  Y  M  R  E  S  S  Y  L  M  A  S  Q  Q  D  *  *  L  T  S  E  Q  M  A  C  T  F  Q  M  K  L  P  R  T  F  N  P  I  S  V  K  G  M  D  R  I  L  H  Q  R  M  V  A  N  T  S  R  R  *  R  M  L  K  R  P  M  K  L  L  D  P  L  I  S  E  G  Y  P  Q  S  L  S  G  C  W  M  M  M  H  L  S  Y  T  N  L  Y  G  P  V  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29380" stop="30156"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDGFKPQEYWTVLVEFKKNKNLDLANNFLSSHLTHFDTKKLSQFSVSSHTEAMEIEGKINSSNFEVLSSKITKKQRNPSPPYITSTLQQDAANKLDFSSTYTMKLAQKLYEGIQLSDGKSTGLITYIRTDGLHISDEATKDIQSYISERYGQNFASKNGRKYFKKVKNAQEAHEAIRPTDIRRLPSKLVGVLDDDALKLYKLIWSRT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="30160" PGL_stop="30923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30160" e_stop="30923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="30160" e_stop="30923" e_length="764"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30160" stop="30923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30160" stop="30687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATGCCAGATGGAACCTGCTACCATAGAGCAGATACAAGTTGATATTGGGAAATCTGACCAATCCATAATCTTCCGTTCATCAAGCTCAAAAGTACAGTTTCCCGGGTACCAAGCTGCCTACGAGGATGTAGAAACTAACTCAACAAGAGATAATGAGAATGGGAGGGATGATCATTCTGAAGTATTTGAGGCTCTTAGGAATTTAACCGCTGGGGATCCAATGTATTTGGGTAAAGTGAAACTTGAGCAACACCAGACTCAGCCTCCACCACGATACTCTGAGGGGTCTTTGGTCAAAAAGCTAGAGGAGCTCGGCATTGGAAGACCTTCTACTTATGCAGCCACAATAAAAGTGTTAAAGGACAGGAATTATGTCATTGCCAAAGGCAGAACACTGCATCCTGAATTTCGTGGGCGTATGGTATCAGCATTTCTCTCTCATTACTTTACTGAAGTAACAGATTATAGCTTCACTGCTGATATGGAGACGGAACTTGATAATGTCTCTGCTGGTTTGACTGAATGGAAGGGCCTTTTGAGAGATTACTGGACTAGATTTAGCAAGTATTGTGAACATACTGGTAATGTGCACATTCATCAGGTGGAGAAGATGTTGGAGAAAACTTTTGGTGATTTTCTGTTTGCATCTCTTCCTAATGAAAGTAGGACATGCCCAAGCTGTCTTCAGGGAACTTTAATCTTCAAAGTGAGCAGGTTTGGTGCAGGCTACTTTATAGGTTGTGACCAACACCCAAAATGCAA</gDNA_template>
            <first_frame> A  C  Q  M  E  P  A  T  I  E  Q  I  Q  V  D  I  G  K  S  D  Q  S  I  I  F  R  S  S  S  S  K  V  Q  F  P  G  Y  Q  A  A  Y  E  D  V  E  T  N  S  T  R  D  N  E  N  G  R  D  D  H  S  E  V  F  E  A  L  R  N  L  T  A  G  D  P  M  Y  L  G  K  V  K  L  E  Q  H  Q  T  Q  P  P  P  R  Y  S  E  G  S  L  V  K  K  L  E  E  L  G  I  G  R  P  S  T  Y  A  A  T  I  K  V  L  K  D  R  N  Y  V  I  A  K  G  R  T  L  H  P  E  F  R  G  R  M  V  S  A  F  L  S  H  Y  F  T  E  V  T  D  Y  S  F  T  A  D  M  E  T  E  L  D  N  V  S  A  G  L  T  E  W  K  G  L  L  R  D  Y  W  T  R  F  S  K  Y  C  E  H  T  G  N  V  H  I  H  Q  V  E  K  M  L  E  K  T  F  G  D  F  L  F  A  S  L  P  N  E  S  R  T  C  P  S  C  L  Q  G  T  L  I  F  K  V  S  R  F  G  A  G  Y  F  I  G  C  D  Q  H  P  K  C   </first_frame>
            <second_frame>  H  A  R  W  N  L  L  P  *  S  R  Y  K  L  I  L  G  N  L  T  N  P  *  S  S  V  H  Q  A  Q  K  Y  S  F  P  G  T  K  L  P  T  R  M  *  K  L  T  Q  Q  E  I  M  R  M  G  G  M  I  I  L  K  Y  L  R  L  L  G  I  *  P  L  G  I  Q  C  I  W  V  K  *  N  L  S  N  T  R  L  S  L  H  H  D  T  L  R  G  L  W  S  K  S  *  R  S  S  A  L  E  D  L  L  L  M  Q  P  Q  *  K  C  *  R  T  G  I  M  S  L  P  K  A  E  H  C  I  L  N  F  V  G  V  W  Y  Q  H  F  S  L  I  T  L  L  K  *  Q  I  I  A  S  L  L  I  W  R  R  N  L  I  M  S  L  L  V  *  L  N  G  R  A  F  *  E  I  T  G  L  D  L  A  S  I  V  N  I  L  V  M  C  T  F  I  R  W  R  R  C  W  R  K  L  L  V  I  F  C  L  H  L  F  L  M  K  V  G  H  A  Q  A  V  F  R  E  L  *  S  S  K  *  A  G  L  V  Q  A  T  L  *  V  V  T  N  T  Q  N  A  </second_frame>
            <third_frame>   M  P  D  G  T  C  Y  H  R  A  D  T  S  *  Y  W  E  I  *  P  I  H  N  L  P  F  I  K  L  K  S  T  V  S  R  V  P  S  C  L  R  G  C  R  N  *  L  N  K  R  *  *  E  W  E  G  *  S  F  *  S  I  *  G  S  *  E  F  N  R  W  G  S  N  V  F  G  *  S  E  T  *  A  T  P  D  S  A  S  T  T  I  L  *  G  V  F  G  Q  K  A  R  G  A  R  H  W  K  T  F  Y  L  C  S  H  N  K  S  V  K  G  Q  E  L  C  H  C  Q  R  Q  N  T  A  S  *  I  S  W  A  Y  G  I  S  I  S  L  S  L  L  Y  *  S  N  R  L  *  L  H  C  *  Y  G  D  G  T  *  *  C  L  C  W  F  D  *  M  E  G  P  F  E  R  L  L  D  *  I  *  Q  V  L  *  T  Y  W  *  C  A  H  S  S  G  G  E  D  V  G  E  N  F  W  *  F  S  V  C  I  S  S  *  *  K  *  D  M  P  K  L  S  S  G  N  F  N  L  Q  S  E  Q  V  W  C  R  L  L  Y  R  L  *  P  T  P  K  M  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30160" stop="30921"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ACQMEPATIEQIQVDIGKSDQSIIFRSSSSKVQFPGYQAAYEDVETNSTRDNENGRDDHSEVFEALRNLTAGDPMYLGKVKLEQHQTQPPPRYSEGSLVKKLEELGIGRPSTYAATIKVLKDRNYVIAKGRTLHPEFRGRMVSAFLSHYFTEVTDYSFTADMETELDNVSAGLTEWKGLLRDYWTRFSKYCEHTGNVHIHQVEKMLEKTFGDFLFASLPNESRTCPSCLQGTLIFKVSRFGAGYFIGCDQHPKC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="32904" PGL_stop="36883"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32904" e_stop="33014"/>
            <exon e_start="33129" e_stop="33218"/>
            <exon e_start="34647" e_stop="34712"/>
            <exon e_start="34829" e_stop="34924"/>
            <exon e_start="36360" e_stop="36883"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.859" e_score="0.991"/>
          <exon-intron don_prob="0.968" acc_prob="0.998" e_score="0.978"/>
          <exon-intron don_prob="0.993" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.942" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="32904" e_stop="33014" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.859">
            <gDNA_intron_boundary i_start="33015" i_stop="33128" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="33129" e_stop="33218" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.968" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33219" i_stop="34646" i_length="1428"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34647" e_stop="34712" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.991">
            <gDNA_intron_boundary i_start="34713" i_stop="34828" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34829" e_stop="34924" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.942">
            <gDNA_intron_boundary i_start="34925" i_stop="36359" i_length="1435"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="36360" e_stop="36883" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32904" stop="33014"/>
              <exon start="33129" stop="33218"/>
              <exon start="34647" stop="34712"/>
              <exon start="34829" stop="34924"/>
              <exon start="36360" stop="36848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36536" stop="36883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGCCAAGACATTATATGGTGAAGAGGATGAAGATATCTCCTCTGAAGACACTAAAAGAAGTGTAGAACCGCCAAAATTGCTGGGTGTCCATCCTTCTTCAAATGAGAAG : ATTCTTATGAAGAATGGTCCATATGGATACTATGTTCAGCTTGGAGAAGACAAGAAAGGATACGTTCCCAAGCGGGCTTCGCTTTCACAG : GTGAAGGATGTCAATTCTGTTACCTTGGAAGATGCCCTGGAGTTGCTTCGTTACCCTGTAACATTG : GGAAACCACCCCGATGATGGCCAGCCGGTCGTTTTAAAGCTTGCAAAGTTCGGATTTACAATCAGACATAGGCGAACAATTGCTCCAGTACCCAAG : AATTTAAAACCCAAAGACATAACCATGGAAAAAGCTTTGAAGCTTTTGCTAAGTAAAGATGTAAGGCGATGTGGTCGACCTAAGCGCCAGCCACAGGTGGAAGAGGCCATTGAGGCAACATAACATCACACTTGTTAGCAGATTAATGTACCATAGAAGTCATTCTTTGATGAAGGCCCTCCTCAGGCTGTTTTATTTTATAGGAGGAATAGTGGAATACGAAGCTTATTTACCCCCACACGGGCTTGGATACTCTACAAGTATGAAGAGTTGTATATCTTGAGTGGCAAAGACGATTTTGTTAGTAGAAATTCCATTTCTGTAATCTCTTCTTACAATCTTTGTTATAGCATTAGGCAATAACTTGGCCATCCAAATGGTCTGTTTAATTCTCCTTTTTTTCTGCCTTGCTAAGATGTAAAGAGAGTGAAGGCATTTTCATTGGCAGTTAAACGCTTCAATTTGCTGAATACATCCTTTTTTATTATCTAAATGAGAGCTTTCAATATTTGCTTAACAACAGT</gDNA_template>
            <first_frame> I  A  K  T  L  Y  G  E  E  D  E  D  I  S  S  E  D  T  K  R  S  V  E  P  P  K  L  L  G  V  H  P  S  S  N  E  K  :  I  L  M  K  N  G  P  Y  G  Y  Y  V  Q  L  G  E  D  K  K  G  Y  V  P  K  R  A  S  L  S  Q  :  V  K  D  V  N  S  V  T  L  E  D  A  L  E  L  L  R  Y  P  V  T  L  :  G  N  H  P  D  D  G  Q  P  V  V  L  K  L  A  K  F  G  F  T  I  R  H  R  R  T  I  A  P  V  P  K  :  N  L  K  P  K  D  I  T  M  E  K  A  L  K  L  L  L  S  K  D  V  R  R  C  G  R  P  K  R  Q  P  Q  V  E  E  A  I  E  A  T  *  H  H  T  C  *  Q  I  N  V  P  *  K  S  F  F  D  E  G  P  P  Q  A  V  L  F  Y  R  R  N  S  G  I  R  S  L  F  T  P  T  R  A  W  I  L  Y  K  Y  E  E  L  Y  I  L  S  G  K  D  D  F  V  S  R  N  S  I  S  V  I  S  S  Y  N  L  C  Y  S  I  R  Q  *  L  G  H  P  N  G  L  F  N  S  P  F  F  L  P  C  *  D  V  K  R  V  K  A  F  S  L  A  V  K  R  F  N  L  L  N  T  S  F  F  I  I  *  M  R  A  F  N  I  C  L  T  T   </first_frame>
            <second_frame>  L  P  R  H  Y  M  V  K  R  M  K  I  S  P  L  K  T  L  K  E  V  *  N  R  Q  N  C  W  V  S  I  L  L  Q  M  R  R :   F  L  *  R  M  V  H  M  D  T  M  F  S  L  E  K  T  R  K  D  T  F  P  S  G  L  R  F  H  R :   *  R  M  S  I  L  L  P  W  K  M  P  W  S  C  F  V  T  L  *  H  W :   E  T  T  P  M  M  A  S  R  S  F  *  S  L  Q  S  S  D  L  Q  S  D  I  G  E  Q  L  L  Q  Y  P  R :   I  *  N  P  K  T  *  P  W  K  K  L  *  S  F  C  *  V  K  M  *  G  D  V  V  D  L  S  A  S  H  R  W  K  R  P  L  R  Q  H  N  I  T  L  V  S  R  L  M  Y  H  R  S  H  S  L  M  K  A  L  L  R  L  F  Y  F  I  G  G  I  V  E  Y  E  A  Y  L  P  P  H  G  L  G  Y  S  T  S  M  K  S  C  I  S  *  V  A  K  T  I  L  L  V  E  I  P  F  L  *  S  L  L  T  I  F  V  I  A  L  G  N  N  L  A  I  Q  M  V  C  L  I  L  L  F  F  C  L  A  K  M  *  R  E  *  R  H  F  H  W  Q  L  N  A  S  I  C  *  I  H  P  F  L  L  S  K  *  E  L  S  I  F  A  *  Q  Q  </second_frame>
            <third_frame>   C  Q  D  I  I  W  *  R  G  *  R  Y  L  L  *  R  H  *  K  K  C  R  T  A  K  I  A  G  C  P  S  F  F  K  *  E   : D  S  Y  E  E  W  S  I  W  I  L  C  S  A  W  R  R  Q  E  R  I  R  S  Q  A  G  F  A  F  T   : G  E  G  C  Q  F  C  Y  L  G  R  C  P  G  V  A  S  L  P  C  N  I   : G  K  P  P  R  *  W  P  A  G  R  F  K  A  C  K  V  R  I  Y  N  Q  T  *  A  N  N  C  S  S  T  Q   : E  F  K  T  Q  R  H  N  H  G  K  S  F  E  A  F  A  K  *  R  C  K  A  M  W  S  T  *  A  P  A  T  G  G  R  G  H  *  G  N  I  T  S  H  L  L  A  D  *  C  T  I  E  V  I  L  *  *  R  P  S  S  G  C  F  I  L  *  E  E  *  W  N  T  K  L  I  Y  P  H  T  G  L  D  T  L  Q  V  *  R  V  V  Y  L  E  W  Q  R  R  F  C  *  *  K  F  H  F  C  N  L  F  L  Q  S  L  L  *  H  *  A  I  T  W  P  S  K  W  S  V  *  F  S  F  F  S  A  L  L  R  C  K  E  S  E  G  I  F  I  G  S  *  T  L  Q  F  A  E  Y  I  L  F  Y  Y  L  N  E  S  F  Q  Y  L  L  N  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32904" stop="33014"/>
                    <exon start="33129" stop="33218"/>
                    <exon start="34647" stop="34712"/>
                    <exon start="34829" stop="34924"/>
                    <exon start="36360" stop="36482"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAKTLYGEEDEDISSEDTKRSVEPPKLLGVHPSSNEKILMKNGPYGYYVQLGEDKKGYVPKRASLSQVKDVNSVTLEDALELLRYPVTLGNHPDDGQPVVLKLAKFGFTIRHRRTIAPVPKNLKPKDITMEKALKLLLSKDVRRCGRPKRQPQVEEAIEAT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36516" stop="36722"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSFFDEGPPQAVLFYRRNSGIRSLFTPTRAWILYKYEELYILSGKDDFVSRNSISVISSYNLCYSIRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="45197" PGL_stop="48753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45197" e_stop="45393"/>
            <exon e_start="46322" e_stop="46471"/>
            <exon e_start="46902" e_stop="47078"/>
            <exon e_start="47350" e_stop="47438"/>
            <exon e_start="47522" e_stop="47586"/>
            <exon e_start="47707" e_stop="47809"/>
            <exon e_start="48238" e_stop="48348"/>
            <exon e_start="48439" e_stop="48753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.864" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.804" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45197" e_stop="45393" e_length="197"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.997">
            <gDNA_intron_boundary i_start="45394" i_stop="46321" i_length="928"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46322" e_stop="46471" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.864" acc_prob="0.972">
            <gDNA_intron_boundary i_start="46472" i_stop="46901" i_length="430"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46902" e_stop="47078" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.804">
            <gDNA_intron_boundary i_start="47079" i_stop="47349" i_length="271"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47350" e_stop="47438" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.936">
            <gDNA_intron_boundary i_start="47439" i_stop="47521" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47522" e_stop="47586" e_length="65"/>
          </exon>
          <intron i_serial="5" don_prob="0.904" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47587" i_stop="47706" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47707" e_stop="47809" e_length="103"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.987">
            <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="48238" e_stop="48348" e_length="111"/>
          </exon>
          <intron i_serial="7" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="0.981">
            <gDNA_exon_boundary e_start="48439" e_stop="48753" e_length="315"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47576" stop="47586"/>
              <exon start="47707" stop="47809"/>
              <exon start="48238" stop="48348"/>
              <exon start="48439" stop="48477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48311" stop="48348"/>
              <exon start="48439" stop="48698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATGCTTCTCAATCCAAATATGGTTCCCATTATAAAAATTTTTTAGAAAAAAGAAGAACGAATCTTCAACTCCCATAGAGTGATGGCAGAAGTAATAGGAGCGCCAGCAGCAGCTCAGGTTAAATCAATCTTTGTATATCCAATTAAATCATGCCGTGGAATTTCTGTTTCTCAAGCACCTATCACTTCTACTG : GATTTCGATGGGATCGACAATGGTTAGTGGTGAATTCCAAAGGCAGGGCCTATACTCAAAGAGTTGAACCAAAGCTTGCTCTTGTCGAAGTGGCATTGCCAATTGAGGCCTTTTCTGAAGGCTGGGAACCAAATAATGACTCTTATCTAG : TTATCAAAGCTCCCGGTATGGATCCACTGAAAATTCCACTAAGTGACCCATCTGTAGTGTCGGATGGTGTCTCGGTCTGGGAGTGGTCTGGTTCTGCCTTGGACGAGGGAGCTGAGGCAGCTATGTGGTTCTCCACACATCTGGGGAAACCAAGTCGGCTAGTTCGCTTTAGTGAAG : TTAAGGAAATGAGAGTTGTAGATCCTAATTATGCTCAAGGATACAATGTTATGTTTTCTGATGGATATCCATACCTCATGCTATCCCAG : GGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAA : TGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG : GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG : GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTGTATTTCTTTTCATCATTGTGAATTGCATCAAGCCTGGCTTAAAACTATGTAAATGT</gDNA_template>
            <first_frame> F  D  A  S  Q  S  K  Y  G  S  H  Y  K  N  F  L  E  K  R  R  T  N  L  Q  L  P  *  S  D  G  R  S  N  R  S  A  S  S  S  S  G  *  I  N  L  C  I  S  N  *  I  M  P  W  N  F  C  F  S  S  T  Y  H  F  Y  W :   I  S  M  G  S  T  M  V  S  G  E  F  Q  R  Q  G  L  Y  S  K  S  *  T  K  A  C  S  C  R  S  G  I  A  N  *  G  L  F  *  R  L  G  T  K  *  *  L  L  S  S :   Y  Q  S  S  R  Y  G  S  T  E  N  S  T  K  *  P  I  C  S  V  G  W  C  L  G  L  G  V  V  W  F  C  L  G  R  G  S  *  G  S  Y  V  V  L  H  T  S  G  E  T  K  S  A  S  S  L  *  *  S :   *  G  N  E  S  C  R  S  *  L  C  S  R  I  Q  C  Y  V  F  *  W  I  S  I  P  H  A  I  P   : G  I  D  E  C  V  K  F  S  S  Q  G  A  C  S  S  K  S  F  *  T  Q  :  C  P  C  *  W  M  *  T  I  C  *  G  F  V  E  G  D  P  N  Q  *  V  N  I  *  G  C  Q  T  M  L  S  L  *   : G  T  Y  H  K  S  R  N  N  S  S  R  L  *  A  N  R  N  S  L  E  I  P  I  R  *  G  L  A  S  E  *  E  T  T  R  E   : G  I  F  W  T  E  H  G  L  F  R  R  S  *  P  W  K  R  Q  D  S  Q  G  W  G  S  C  L  C  P  *  G  C  S  F  *  C  *  G  S  S  L  N  S  S  C  S  I  T  V  M  *  N  V  H  L  N  K  V  I  P  K  D  K  N  T  N  V  R  K  N  G  L  P  G  Q  C  *  I  N  L  H  K  R  F  A  C  I  S  F  H  H  C  E  L  H  Q  A  W  L  K  T  M  *  M  </first_frame>
            <second_frame>  L  M  L  L  N  P  N  M  V  P  I  I  K  I  F  *  K  K  E  E  R  I  F  N  S  H  R  V  M  A  E  V  I  G  A  P  A  A  A  Q  V  K  S  I  F  V  Y  P  I  K  S  C  R  G  I  S  V  S  Q  A  P  I  T  S  T   : G  F  R  W  D  R  Q  W  L  V  V  N  S  K  G  R  A  Y  T  Q  R  V  E  P  K  L  A  L  V  E  V  A  L  P  I  E  A  F  S  E  G  W  E  P  N  N  D  S  Y  L   : V  I  K  A  P  G  M  D  P  L  K  I  P  L  S  D  P  S  V  V  S  D  G  V  S  V  W  E  W  S  G  S  A  L  D  E  G  A  E  A  A  M  W  F  S  T  H  L  G  K  P  S  R  L  V  R  F  S  E   : V  K  E  M  R  V  V  D  P  N  Y  A  Q  G  Y  N  V  M  F  S  D  G  Y  P  Y  L  M  L  S  Q  :  G  S  M  N  A  L  N  S  L  L  K  E  P  V  P  V  N  R  F  R  P  N :   V  L  V  D  G  C  E  P  F  A  E  D  L  W  K  E  I  Q  I  N  K  L  T  F  E  G  V  K  L  C  S  R  C  K  :  V  P  T  I  N  Q  E  T  T  V  A  G  S  E  P  T  E  T  L  L  K  F  R  S  D  K  A  L  R  P  N  K  K  Q  Q  G  K  :  V  Y  F  G  Q  N  M  V  C  S  D  A  L  S  H  G  K  G  K  I  V  K  V  G  D  P  V  Y  V  H  K  V  V  P  S  S  A  E  A  P  A  *  T  L  V  V  L  S  L  *  C  K  M  C  I  *  I  R  *  S  Q  K  I  R  I  L  M  *  G  K  M  V  F  Q  A  N  A  K  *  I  Y  I  N  V  S  P  V  F  L  F  I  I  V  N  C  I  K  P  G  L  K  L  C  K  C </second_frame>
            <third_frame>   *  C  F  S  I  Q  I  W  F  P  L  *  K  F  F  R  K  K  K  N  E  S  S  T  P  I  E  *  W  Q  K  *  *  E  R  Q  Q  Q  L  R  L  N  Q  S  L  Y  I  Q  L  N  H  A  V  E  F  L  F  L  K  H  L  S  L  L  L  :  D  F  D  G  I  D  N  G  *  W  *  I  P  K  A  G  P  I  L  K  E  L  N  Q  S  L  L  L  S  K  W  H  C  Q  L  R  P  F  L  K  A  G  N  Q  I  M  T  L  I  *  :  L  S  K  L  P  V  W  I  H  *  K  F  H  *  V  T  H  L  *  C  R  M  V  S  R  S  G  S  G  L  V  L  P  W  T  R  E  L  R  Q  L  C  G  S  P  H  I  W  G  N  Q  V  G  *  F  A  L  V  K  :  L  R  K  *  E  L  *  I  L  I  M  L  K  D  T  M  L  C  F  L  M  D  I  H  T  S  C  Y  P  R :   D  R  *  M  R  *  I  L  F  S  R  S  L  F  Q  *  I  V  L  D  P   : M  S  L  L  M  D  V  N  H  L  L  R  I  C  G  R  R  S  K  S  I  S  *  H  L  R  V  S  N  Y  A  L  A  V  R :   Y  L  P  *  I  K  K  Q  Q  *  Q  A  L  S  Q  Q  K  L  S  *  N  S  D  P  I  R  P  C  V  R  I  R  N  N  K  G  R :   Y  I  L  D  R  T  W  F  V  P  T  L  L  A  M  E  K  A  R  *  S  R  L  G  I  L  F  M  S  I  R  L  F  L  L  V  L  R  L  Q  L  E  L  *  L  F  Y  H  C  N  V  K  C  A  S  E  *  G  D  P  K  R  *  E  Y  *  C  K  E  K  W  S  S  R  P  M  L  N  K  S  T  *  T  F  R  L  Y  F  F  S  S  L  *  I  A  S  S  L  A  *  N  Y  V  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45246" stop="45393"/>
                    <exon start="46322" stop="46471"/>
                    <exon start="46902" stop="47078"/>
                    <exon start="47350" stop="47438"/>
                    <exon start="47522" stop="47586"/>
                    <exon start="47707" stop="47809"/>
                    <exon start="48238" stop="48348"/>
                    <exon start="48439" stop="48564"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKEERIFNSHRVMAEVIGAPAAAQVKSIFVYPIKSCRGISVSQAPITSTGFRWDRQWLVVNSKGRAYTQRVEPKLALVEVALPIEAFSEGWEPNNDSYLVIKAPGMDPLKIPLSDPSVVSDGVSVWEWSGSALDEGAEAAMWFSTHLGKPSRLVRFSEVKEMRVVDPNYAQGYNVMFSDGYPYLMLSQGSMNALNSLLKEPVPVNRFRPNVLVDGCEPFAEDLWKEIQINKLTFEGVKLCSRCKVPTINQETTVAGSEPTETLLKFRSDKALRPNKKQQGKVYFGQNMVCSDALSHGKGKIVKVGDPVYVHKVVPSSAEAPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47444" e_stop="47809"/>
            <exon e_start="48238" e_stop="48348"/>
            <exon e_start="48439" e_stop="48698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.987" e_score="0.937"/>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="0.991"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="47444" e_stop="47809" e_length="366"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.987">
            <gDNA_intron_boundary i_start="47810" i_stop="48237" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="48238" e_stop="48348" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="48349" i_stop="48438" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="48439" e_stop="48698" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47444" stop="47809"/>
              <exon start="48238" stop="48348"/>
              <exon start="48439" stop="48696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545757" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48311" stop="48348"/>
              <exon start="48439" stop="48698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATCGTCATTTAAATTCAGCCTAAACATCCATAGAACAAGAGCTTAGGCTAGATTTTCTTGGTCCATGTTCTGCAGGGATCGATGAATGCGTTAAATTCTCTTCTCAAGGAGCCTGTTCCAGTAAATCGTTTTAGACCCAAGTATACTCGTCCTACTTGTATAATTTGTTTATGATTGGTTACTTCCTTTCCTTTTTCTGTACAAACTGTTAGTACTTTAGATTAACTCAGTTAAATTTTTGACATTATCTTCTTTCACAGTGTCCTTGTTGATGGATGTGAACCATTTGCTGAGGATTTGTGGAAGGAGATCCAAATCAATAAGTTAACATTTGAGGGTGTCAAACTATGCTCTCGCTGTAAG : GTACCTACCATAAATCAAGAAACAACAGTAGCAGGCTCTGAGCCAACAGAAACTCTCTTGAAATTCCGATCCGATAAGGCCTTGCGTCCGAATAAGAAACAACAAGGGAAG : GTATATTTTGGACAGAACATGGTTTGTTCCGACGCTCTTAGCCATGGAAAAGGCAAGATAGTCAAGGTTGGGGATCCTGTTTATGTCCATAAGGTTGTTCCTTCTAGTGCTGAGGCTCCAGCTTGAACTCTAGTTGTTCTATCACTGTAATGTAAAATGTGCATCTGAATAAGGTGATCCCAAAAGATAAGAATACTAATGTAAGGAAAAATGGTCTTCCAGGCCAATGCTAAATAAATCTACATAAACGTTTCGCCTGT</gDNA_template>
            <first_frame> *  I  V  I  *  I  Q  P  K  H  P  *  N  K  S  L  G  *  I  F  L  V  H  V  L  Q  G  S  M  N  A  L  N  S  L  L  K  E  P  V  P  V  N  R  F  R  P  K  Y  T  R  P  T  C  I  I  C  L  *  L  V  T  S  F  P  F  S  V  Q  T  V  S  T  L  D  *  L  S  *  I  F  D  I  I  F  F  H  S  V  L  V  D  G  C  E  P  F  A  E  D  L  W  K  E  I  Q  I  N  K  L  T  F  E  G  V  K  L  C  S  R  C  K  :  V  P  T  I  N  Q  E  T  T  V  A  G  S  E  P  T  E  T  L  L  K  F  R  S  D  K  A  L  R  P  N  K  K  Q  Q  G  K  :  V  Y  F  G  Q  N  M  V  C  S  D  A  L  S  H  G  K  G  K  I  V  K  V  G  D  P  V  Y  V  H  K  V  V  P  S  S  A  E  A  P  A  *  T  L  V  V  L  S  L  *  C  K  M  C  I  *  I  R  *  S  Q  K  I  R  I  L  M  *  G  K  M  V  F  Q  A  N  A  K  *  I  Y  I  N  V  S  P   </first_frame>
            <second_frame>  K  S  S  F  K  F  S  L  N  I  H  R  T  R  A  *  A  R  F  S  W  S  M  F  C  R  D  R  *  M  R  *  I  L  F  S  R  S  L  F  Q  *  I  V  L  D  P  S  I  L  V  L  L  V  *  F  V  Y  D  W  L  L  P  F  L  F  L  Y  K  L  L  V  L  *  I  N  S  V  K  F  L  T  L  S  S  F  T  V  S  L  L  M  D  V  N  H  L  L  R  I  C  G  R  R  S  K  S  I  S  *  H  L  R  V  S  N  Y  A  L  A  V  R :   Y  L  P  *  I  K  K  Q  Q  *  Q  A  L  S  Q  Q  K  L  S  *  N  S  D  P  I  R  P  C  V  R  I  R  N  N  K  G  R :   Y  I  L  D  R  T  W  F  V  P  T  L  L  A  M  E  K  A  R  *  S  R  L  G  I  L  F  M  S  I  R  L  F  L  L  V  L  R  L  Q  L  E  L  *  L  F  Y  H  C  N  V  K  C  A  S  E  *  G  D  P  K  R  *  E  Y  *  C  K  E  K  W  S  S  R  P  M  L  N  K  S  T  *  T  F  R  L  </second_frame>
            <third_frame>   N  R  H  L  N  S  A  *  T  S  I  E  Q  E  L  R  L  D  F  L  G  P  C  S  A  G  I  D  E  C  V  K  F  S  S  Q  G  A  C  S  S  K  S  F  *  T  Q  V  Y  S  S  Y  L  Y  N  L  F  M  I  G  Y  F  L  S  F  F  C  T  N  C  *  Y  F  R  L  T  Q  L  N  F  *  H  Y  L  L  S  Q  C  P  C  *  W  M  *  T  I  C  *  G  F  V  E  G  D  P  N  Q  *  V  N  I  *  G  C  Q  T  M  L  S  L  *   : G  T  Y  H  K  S  R  N  N  S  S  R  L  *  A  N  R  N  S  L  E  I  P  I  R  *  G  L  A  S  E  *  E  T  T  R  E   : G  I  F  W  T  E  H  G  L  F  R  R  S  *  P  W  K  R  Q  D  S  Q  G  W  G  S  C  L  C  P  *  G  C  S  F  *  C  *  G  S  S  L  N  S  S  C  S  I  T  V  M  *  N  V  H  L  N  K  V  I  P  K  D  K  N  T  N  V  R  K  N  G  L  P  G  Q  C  *  I  N  L  H  K  R  F  A  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47681" stop="47809"/>
                    <exon start="48238" stop="48348"/>
                    <exon start="48439" stop="48564"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFDIIFFHSVLVDGCEPFAEDLWKEIQINKLTFEGVKLCSRCKVPTINQETTVAGSEPTETLLKFRSDKALRPNKKQQGKVYFGQNMVCSDALSHGKGKIVKVGDPVYVHKVVPSSAEAPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="61453" PGL_stop="61926"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61453" e_stop="61926"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="61453" e_stop="61926" e_length="474"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61453" stop="61926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331277" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTACTCCCGCTACCCTCCTCGCTGTTTTCATCTTCCTCATCAGCGTCTCTCAGAGACCTCCTTCATTTTGTTGAGCCTAAAAGATTCTTATATTTAAGGTTTAAACCCTGCATAGATGATCATTATCAGAAGTTTTTGTTTTTCTTCATGAGAATCTGAGTTGAAAAGGCATGCTCTTTTACTCCTTCCGTACCAAACAGTTCACTTCAAAGCTAATCCCATGTAAGTCTTTCTCTAACTTCACCATTAACCGTGTATTCTCAGCTCTATCTAACCCTTCTCATACTGACCAAGAACCTGAAATAGACTATTCAATTTCTACTTTGAAAACTGAAATGGGACTACCCAAATTGAGTTCTTGTGGAACTGAAATGGAAATACCCATATCTGATAACTCAATGAAGATTGCCCCAATACCTAAGTTTAATTCTTGTGTAACTGAAGTAGAAGAACCCCTTTCTGATAAATCATTT</gDNA_template>
            <first_frame> P  T  P  A  T  L  L  A  V  F  I  F  L  I  S  V  S  Q  R  P  P  S  F  C  *  A  *  K  I  L  I  F  K  V  *  T  L  H  R  *  S  L  S  E  V  F  V  F  L  H  E  N  L  S  *  K  G  M  L  F  Y  S  F  R  T  K  Q  F  T  S  K  L  I  P  C  K  S  F  S  N  F  T  I  N  R  V  F  S  A  L  S  N  P  S  H  T  D  Q  E  P  E  I  D  Y  S  I  S  T  L  K  T  E  M  G  L  P  K  L  S  S  C  G  T  E  M  E  I  P  I  S  D  N  S  M  K  I  A  P  I  P  K  F  N  S  C  V  T  E  V  E  E  P  L  S  D  K  S  F </first_frame>
            <second_frame>  L  L  P  L  P  S  S  L  F  S  S  S  S  S  A  S  L  R  D  L  L  H  F  V  E  P  K  R  F  L  Y  L  R  F  K  P  C  I  D  D  H  Y  Q  K  F  L  F  F  F  M  R  I  *  V  E  K  A  C  S  F  T  P  S  V  P  N  S  S  L  Q  S  *  S  H  V  S  L  S  L  T  S  P  L  T  V  Y  S  Q  L  Y  L  T  L  L  I  L  T  K  N  L  K  *  T  I  Q  F  L  L  *  K  L  K  W  D  Y  P  N  *  V  L  V  E  L  K  W  K  Y  P  Y  L  I  T  Q  *  R  L  P  Q  Y  L  S  L  I  L  V  *  L  K  *  K  N  P  F  L  I  N  H   </second_frame>
            <third_frame>   Y  S  R  Y  P  P  R  C  F  H  L  P  H  Q  R  L  S  E  T  S  F  I  L  L  S  L  K  D  S  Y  I  *  G  L  N  P  A  *  M  I  I  I  R  S  F  C  F  S  S  *  E  S  E  L  K  R  H  A  L  L  L  L  P  Y  Q  T  V  H  F  K  A  N  P  M  *  V  F  L  *  L  H  H  *  P  C  I  L  S  S  I  *  P  F  S  Y  *  P  R  T  *  N  R  L  F  N  F  Y  F  E  N  *  N  G  T  T  Q  I  E  F  L  W  N  *  N  G  N  T  H  I  *  *  L  N  E  D  C  P  N  T  *  V  *  F  L  C  N  *  S  R  R  T  P  F  *  *  I  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61618" stop="61926"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGMLFYSFRTKQFTSKLIPCKSFSNFTINRVFSALSNPSHTDQEPEIDYSISTLKTEMGLPKLSSCGTEMEIPISDNSMKIAPIPKFNSCVTEVEEPLSDKSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="73449" PGL_stop="69624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73449" e_stop="73372"/>
            <exon e_start="71959" e_stop="71855"/>
            <exon e_start="71767" e_stop="71239"/>
            <exon e_start="70589" e_stop="70484"/>
            <exon e_start="70167" e_stop="69624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.827" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.843" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73449" e_stop="73372" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.827" acc_prob="0.972">
            <gDNA_intron_boundary i_start="73371" i_stop="71960" i_length="1412"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71959" e_stop="71855" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.842">
            <gDNA_intron_boundary i_start="71854" i_stop="71768" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71767" e_stop="71239" e_length="529"/>
          </exon>
          <intron i_serial="3" don_prob="0.882" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71238" i_stop="70590" i_length="649"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70589" e_stop="70484" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.915" acc_prob="0.843">
            <gDNA_intron_boundary i_start="70483" i_stop="70168" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="70167" e_stop="69624" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73449" stop="73372"/>
              <exon start="71959" stop="71855"/>
              <exon start="71767" stop="71239"/>
              <exon start="70589" stop="70565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73448" stop="73372"/>
              <exon start="71959" stop="71855"/>
              <exon start="71767" stop="71246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73448" stop="73372"/>
              <exon start="71959" stop="71855"/>
              <exon start="71767" stop="71372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71307" stop="71239"/>
              <exon start="70589" stop="70484"/>
              <exon start="70167" stop="69657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71300" stop="71239"/>
              <exon start="70589" stop="70484"/>
              <exon start="70167" stop="69624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCA : GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAG : GAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG : GATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTG : GTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACCATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGGAATTGCTAT</gDNA_template>
            <first_frame> V  V  R  M  H  D  L  I  Q  D  I  L  G  W  E  R  F  Y  L  S  G  R  L  Q  K  P  :  V  N  I  L  T  D  N  L  D  I  K  S  V  N  S  V  N  L  K  A  A  T  S  A  A  L  L  L  L  P  S  K  F  T  E  :  E  D  L  Y  A  K  I  C  S  L  S  Y  T  G  D  L  R  M  L  F  A  E  D  K  N  K  V  D  L  T  F  E  W  V  *  I  L  K  F  C  G  P  D  C  T  T  W  K  Y  Q  S  T  S  K  F  I  V  *  L  G  S  F  S  I  L  *  F  Y  I  T  S  S  G  S  M  N  I  S  *  F  A  S  H  I  Y  K  I  S  F  L  D  *  N  L  N  L  N  F  *  H  S  I  S  *  C  I  G  N  F  H  A  T  L  I  D  *  I  D  S  S  I  P  C  T  *  I  S  S  L  H  I  D  P  G  E  Q  N  C  T  R  T  V  P  F  I  *  G  N  V  *  A  I  S  G  R  I  R  G  Q  K  L  V  E  I  F  S  S  W  *  *  A  S  K  H  I  S   : G  L  W  I  I  C  C  F  H  L  G  F  F  S  S  F  I  N  Q  K  *  D  G  H  E  T  W  R  K  E  N  S  G  *  L  W :   *  S  *  T  T  N  S  D  W  F  K  R  T  G  C  *  V  H  A  E  A  S  *  T  K  G  Y  V  F  *  H  K  A  G  C  C  R  F  I  D  C  W  C  C  S  W  S  Q  I  C  S  K  Q  D  A  Q  G  L  E  I  L  G  V  I  V  S  C  F  W  V  T  S  R  L  L  T  G  S  D  M  G  I  *  P  Q  P  Q  L  H  L  M  T  C  G  S  T  M  E  F  L  A  W  I  E  F  A  D  S  P  A  A  F  S  K  *  D  K  *  N  L  R  G  E  I  T  N  N  P  S  K  N  F  F  *  K  F  S  V  H  L  Y  S  F  L  L  F  I  S  K  V  G  R  V  L  Q  G  R  S  S  C  C  M  F  R  T  S  W  *  K  E  V  N  Q  C  F  *  T  R  N  C  Y </first_frame>
            <second_frame>  L  Y  G  C  M  T  *  F  K  T  Y  W  D  G  R  G  F  I  S  A  V  V  C  R  N  Q :   *  T  F  L  R  I  T  W  I  *  K  A  *  T  A  *  I  *  K  L  Q  L  L  L  L  F  S  F  C  H  L  N  S  R  R :   K  I  Y  M  P  K  S  V  A  S  H  I  Q  V  T  C  V  C  F  L  Q  R  T  K  I  R  *  I  *  H  L  S  G  F  K  F  *  N  F  V  A  L  T  V  P  H  G  S  I  N  L  Q  V  S  L  *  C  N  W  V  V  S  Q  F  Y  S  F  I  L  L  P  A  D  Q  *  I  S  V  N  L  H  L  I  S  T  K  Y  P  F  W  T  R  I  *  I  S  T  F  S  I  V  S  H  S  A  L  A  T  F  M  P  H  *  L  I  E  L  I  L  P  F  R  V  H  E  F  L  H  C  I  L  I  Q  V  N  K  I  V  Q  G  Q  F  H  L  F  E  E  M  Y  K  P  F  L  E  E  Y  E  A  K  N  L  L  R  F  S  V  A  G  D  K  Q  V  N  I  F  Q  :  D  C  G  L  S  A  A  S  T  L  V  S  S  L  P  S  S  I  R  S  E  M  A  M  K  L  G  E  K  R  I  L  D  D  S   : G  R  V  R  Q  Q  I  V  I  G  S  K  E  Q  A  A  E  C  M  Q  R  L  V  R  R  K  V  M  F  S  S  T  R  Q  A  V  A  G  L  L  T  A  G  A  V  H  G  V  R  Y  V  A  N  K  M  R  K  A  W  K  S  W  V  *  L  F  P  V  F  G  *  H  H  V  F  *  L  V  Q  T  W  G  Y  S  H  N  H  S  Y  T  *  *  H  A  V  Q  P  W  S  S  *  H  G  *  S  L  P  T  L  L  L  L  F  Q  N  K  T  N  R  I  *  G  G  K  *  P  T  T  H  Q  K  I  S  S  E  S  F  L  F  T  C  I  L  F  F  Y  L  F  Q  R  W  E  E  F  F  R  E  G  R  A  V  V  C  L  E  H  P  G  E  K  K  L  I  N  V  S  K  Q  G  I  A   </second_frame>
            <third_frame>   C  T  D  A  *  L  D  S  R  H  I  G  M  G  E  V  L  S  Q  R  S  F  A  E  T   : S  E  H  S  Y  G  *  L  G  Y  K  K  R  E  Q  R  E  S  E  S  C  N  F  C  C  S  S  P  F  A  I  *  I  H  G   : G  R  F  I  C  Q  N  L  *  P  L  I  Y  R  *  L  A  Y  A  F  C  R  G  Q  K  *  G  R  F  D  I  *  V  G  L  N  F  K  I  L  W  P  *  L  Y  H  M  E  V  S  I  Y  K  *  V  Y  S  V  I  G  *  F  L  N  F  I  V  L  Y  Y  F  Q  R  I  N  E  Y  Q  L  I  C  I  S  Y  L  Q  N  I  L  F  G  L  E  F  E  S  Q  L  L  A  *  Y  L  I  V  H  W  Q  L  S  C  H  I  N  *  L  N  *  F  F  H  S  V  Y  M  N  F  F  I  A  Y  *  S  R  *  T  K  L  Y  K  D  S  S  I  Y  L  R  K  C  I  S  H  F  W  K  N  T  R  P  K  T  C  *  D  F  Q  *  L  V  I  S  K  *  T  Y  F  R :   I  V  D  Y  L  L  L  P  P  W  F  L  L  F  L  H  Q  S  E  V  R  W  P  *  N  L  E  K  R  E  F  W  M  T  L  :  V  E  L  D  N  K  *  *  L  V  Q  K  N  R  L  L  S  A  C  R  G  *  L  D  E  R  L  C  F  L  A  Q  G  R  L  L  Q  V  Y  *  L  L  V  L  F  M  E  S  D  M  *  Q  T  R  C  A  R  L  G  N  L  G  C  N  C  F  L  F  L  G  D  I  T  S  F  N  W  F  R  H  G  D  I  A  T  T  T  V  T  P  N  D  M  R  F  N  H  G  V  L  S  M  D  R  V  C  R  L  S  C  C  F  F  K  I  R  Q  I  E  F  E  G  G  N  N  Q  Q  P  I  K  K  F  L  L  K  V  F  C  S  L  V  F  F  S  F  I  Y  F  K  G  G  K  S  S  S  G  K  V  E  L  L  Y  V  *  N  I  L  V  K  R  S  *  S  M  F  L  N  K  E  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71427" stop="71239"/>
                    <exon start="70589" stop="70484"/>
                    <exon start="70167" stop="69977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIELILPFRVHEFLHCILIQVNKIVQGQFHLFEEMYKPFLEEYEAKNLLRFSVAGDKQVNIFQDCGLSAASTLVSSLPSSIRSEMAMKLGEKRILDDSGRVRQQIVIGSKEQAAECMQRLVRRKVMFSSTRQAVAGLLTAGAVHGVRYVANKMRKAWKSWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73449" stop="73372"/>
                    <exon start="71959" stop="71855"/>
                    <exon start="71767" stop="71663"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVRMHDLIQDILGWERFYLSGRLQKPVNILTDNLDIKSVNSVNLKAATSAALLLLPSKFTEEDLYAKICSLSYTGDLRMLFAEDKNKVDLTFEWV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="74367" PGL_stop="73573"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74367" e_stop="74279"/>
            <exon e_start="74118" e_stop="74009"/>
            <exon e_start="73899" e_stop="73843"/>
            <exon e_start="73771" e_stop="73709"/>
            <exon e_start="73590" e_stop="73573"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.933"/>
          <exon-intron don_prob="0.917" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.516" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="74367" e_stop="74279" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74278" i_stop="74119" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74118" e_stop="74009" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.917" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74008" i_stop="73900" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="73899" e_stop="73843" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.516">
            <gDNA_intron_boundary i_start="73842" i_stop="73772" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73771" e_stop="73709" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="73708" i_stop="73591" i_length="118"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73590" e_stop="73573" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74367" stop="74279"/>
              <exon start="74118" stop="74009"/>
              <exon start="73899" stop="73843"/>
              <exon start="73771" stop="73709"/>
              <exon start="73590" stop="73573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279282" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACCCCAGGAACTTAATTGAAAAGATTTGCCAAATTGATAGCTAAATTTTGTTAATTAGGGTTCAAATTGCACATGTGTACTGATCA : AAATGGTGGGACAGGATAAAGCTGAGCTAGGGGGTTTGCTTGAAATTCTACCCCCGGTAGAGTTTTGCTGTATATATGGTTCTAAACTTCATCCCAACAACAAAGATGAG : ACATCTATGACAGATTACATTATTGGAGTATCTGATCCTCGACAATGGCATTCTGAG : AATCTAAAATTGAACAAGGATCACTATGCTTCGTGTCTCATTCGCCTTGGTGGAGCAAGGATG : ATAACTGATATTGCAAAT</gDNA_template>
            <first_frame> K  T  P  G  T  *  L  K  R  F  A  K  L  I  A  K  F  C  *  L  G  F  K  L  H  M  C  T  D  Q :   N  G  G  T  G  *  S  *  A  R  G  F  A  *  N  S  T  P  G  R  V  L  L  Y  I  W  F  *  T  S  S  Q  Q  Q  R  *   : D  I  Y  D  R  L  H  Y  W  S  I  *  S  S  T  M  A  F  *   : E  S  K  I  E  Q  G  S  L  C  F  V  S  H  S  P  W  W  S  K  D   : D  N  *  Y  C  K  </first_frame>
            <second_frame>  K  P  Q  E  L  N  *  K  D  L  P  N  *  *  L  N  F  V  N  *  G  S  N  C  T  C  V  L  I   : K  M  V  G  Q  D  K  A  E  L  G  G  L  L  E  I  L  P  P  V  E  F  C  C  I  Y  G  S  K  L  H  P  N  N  K  D  E  :  T  S  M  T  D  Y  I  I  G  V  S  D  P  R  Q  W  H  S  E  :  N  L  K  L  N  K  D  H  Y  A  S  C  L  I  R  L  G  G  A  R  M  :  I  T  D  I  A  N </second_frame>
            <third_frame>   N  P  R  N  L  I  E  K  I  C  Q  I  D  S  *  I  L  L  I  R  V  Q  I  A  H  V  Y  *  S  :  K  W  W  D  R  I  K  L  S  *  G  V  C  L  K  F  Y  P  R  *  S  F  A  V  Y  M  V  L  N  F  I  P  T  T  K  M  R :   H  L  *  Q  I  T  L  L  E  Y  L  I  L  D  N  G  I  L  R :   I  *  N  *  T  R  I  T  M  L  R  V  S  F  A  L  V  E  Q  G  * :   *  L  I  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74306" stop="74279"/>
                    <exon start="74118" stop="74009"/>
                    <exon start="73899" stop="73843"/>
                    <exon start="73771" stop="73709"/>
                    <exon start="73590" stop="73573"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSNCTCVLIKMVGQDKAELGGLLEILPPVEFCCIYGSKLHPNNKDETSMTDYIIGVSDPRQWHSENLKLNKDHYASCLIRLGGARMITDIAN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="83036" PGL_stop="83364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83036" e_stop="83364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="83036" e_stop="83364" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83036" stop="83364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613312" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGATGCATGCTTTGTTGTTGGACAGGTTCAAGACTGCTGATGCTGTCGATTGGAGGAAATCTGGTGTCACTGTGCTGCCTGACCTGATCGCTACCAAAGAATGGCTTACCTCTGAAAATTCGAAATGCATTGACCTGTAAAAGTCCCGTTTGATTATTTTCTTGCCTATAATGGTAGGTAGATTTGTATTACAAGAATGGTTATGAGTTTTATGAATGTGATGAAGAAACATTTAGTTCGATATGCCAGATGCTGTTGTATCTGCATAATATTAGAATGACAAGAAGAAATAACTATACTCATCATGATTTCAATTACACCAAAAGTT</gDNA_template>
            <first_frame> G  M  H  A  L  L  L  D  R  F  K  T  A  D  A  V  D  W  R  K  S  G  V  T  V  L  P  D  L  I  A  T  K  E  W  L  T  S  E  N  S  K  C  I  D  L  *  K  S  R  L  I  I  F  L  P  I  M  V  G  R  F  V  L  Q  E  W  L  *  V  L  *  M  *  *  R  N  I  *  F  D  M  P  D  A  V  V  S  A  *  Y  *  N  D  K  K  K  *  L  Y  S  S  *  F  Q  L  H  Q  K   </first_frame>
            <second_frame>  G  C  M  L  C  C  W  T  G  S  R  L  L  M  L  S  I  G  G  N  L  V  S  L  C  C  L  T  *  S  L  P  K  N  G  L  P  L  K  I  R  N  A  L  T  C  K  S  P  V  *  L  F  S  C  L  *  W  *  V  D  L  Y  Y  K  N  G  Y  E  F  Y  E  C  D  E  E  T  F  S  S  I  C  Q  M  L  L  Y  L  H  N  I  R  M  T  R  R  N  N  Y  T  H  H  D  F  N  Y  T  K  S  </second_frame>
            <third_frame>   D  A  C  F  V  V  G  Q  V  Q  D  C  *  C  C  R  L  E  E  I  W  C  H  C  A  A  *  P  D  R  Y  Q  R  M  A  Y  L  *  K  F  E  M  H  *  P  V  K  V  P  F  D  Y  F  L  A  Y  N  G  R  *  I  C  I  T  R  M  V  M  S  F  M  N  V  M  K  K  H  L  V  R  Y  A  R  C  C  C  I  C  I  I  L  E  *  Q  E  E  I  T  I  L  I  M  I  S  I  T  P  K  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0073G04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="87335" PGL_stop="88988"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87335" e_stop="87352"/>
            <exon e_start="88172" e_stop="88988"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="87335" e_stop="87352" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87353" i_stop="88171" i_length="819"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="88172" e_stop="88988" e_length="817"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87335" stop="87352"/>
              <exon start="88172" stop="88474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222534" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88411" stop="88988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598632" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTCTCTCTCTGTG : TTTTGAAATTCCAAGTATATTGATTCAATGAAGAAAAATAGTTCAACACTTGAGCAGCCCTTCTAAGATAGAAGGTGCTAAACAGTGGCCAAAATCTTTCTACTGCCTTGCAAACTTCCTGCCCTAGAACTAACTATACACACCATACAGCTTCAAACAAAGGCAGTTGTTATGCAGCTGATTAGTTGTATTTCAGCTACAGACATCTACAGGCAATGAAGTACAAAAACAGAAAACATCTCAAAATTTAGATAGAAAACAGCCTTATGGATTGAAATACTCAAGTCTTGACAAATAAAAAAGGTAAAACTAATTAACTAATAAGCACGTCTATGACCAGGAACTTCAGCTGCAACAAACTCCTGCCCAAAAACAAGTGAATAAACGGCAAAATTTTGAACTACATGACGTGCATTTTAACATACATAGGAGCACACTCAATTGGGGTAAAAACCTTCACCTCTACTCCTCTTGAGCATCATCTTTATTCTTCTTTTTCTTCTTATCCTTCTTCTTGCTTTTACTTCCTTCATCGTCACTTCCAACATCACCATTCTCTGATTCTTTATCTTTCTTCTTTTTCTTTTTCTTCTTCTCGGACTTCTCCTCATCTGAGGATGCAACATCGTTATTCTCTTTGTCCTTCTTTTTCTTTTCCTTTTTCACAGACTCCACATCAGGGGATGCAGCTTCATCAGCTTCTTTCTTCTTTTTCTTCTTCTTTTCTTTTTTCAGTTCAGACTTATCCAATGCTTCCTCGACTACCTCTACCTTTGGTTTCTTTAAAGCACTGGGTGCAGGGGATACATCTAAATCA</gDNA_template>
            <first_frame> F  F  S  L  S  V  :  F  *  N  S  K  Y  I  D  S  M  K  K  N  S  S  T  L  E  Q  P  F  *  D  R  R  C  *  T  V  A  K  I  F  L  L  P  C  K  L  P  A  L  E  L  T  I  H  T  I  Q  L  Q  T  K  A  V  V  M  Q  L  I  S  C  I  S  A  T  D  I  Y  R  Q  *  S  T  K  T  E  N  I  S  K  F  R  *  K  T  A  L  W  I  E  I  L  K  S  *  Q  I  K  K  V  K  L  I  N  *  *  A  R  L  *  P  G  T  S  A  A  T  N  S  C  P  K  T  S  E  *  T  A  K  F  *  T  T  *  R  A  F  *  H  T  *  E  H  T  Q  L  G  *  K  P  S  P  L  L  L  L  S  I  I  F  I  L  L  F  L  L  I  L  L  L  A  F  T  S  F  I  V  T  S  N  I  T  I  L  *  F  F  I  F  L  L  F  L  F  L  L  L  G  L  L  L  I  *  G  C  N  I  V  I  L  F  V  L  L  F  L  F  L  F  H  R  L  H  I  R  G  C  S  F  I  S  F  F  L  L  F  L  L  L  F  F  F  Q  F  R  L  I  Q  C  F  L  D  Y  L  Y  L  W  F  L  *  S  T  G  C  R  G  Y  I  *  I  </first_frame>
            <second_frame>  F  F  L  S  L  C :   F  E  I  P  S  I  L  I  Q  *  R  K  I  V  Q  H  L  S  S  P  S  K  I  E  G  A  K  Q  W  P  K  S  F  Y  C  L  A  N  F  L  P  *  N  *  L  Y  T  P  Y  S  F  K  Q  R  Q  L  L  C  S  *  L  V  V  F  Q  L  Q  T  S  T  G  N  E  V  Q  K  Q  K  T  S  Q  N  L  D  R  K  Q  P  Y  G  L  K  Y  S  S  L  D  K  *  K  R  *  N  *  L  T  N  K  H  V  Y  D  Q  E  L  Q  L  Q  Q  T  P  A  Q  K  Q  V  N  K  R  Q  N  F  E  L  H  D  V  H  F  N  I  H  R  S  T  L  N  W  G  K  N  L  H  L  Y  S  S  *  A  S  S  L  F  F  F  F  F  L  S  F  F  L  L  L  L  P  S  S  S  L  P  T  S  P  F  S  D  S  L  S  F  F  F  F  F  F  F  F  S  D  F  S  S  S  E  D  A  T  S  L  F  S  L  S  F  F  F  F  S  F  F  T  D  S  T  S  G  D  A  A  S  S  A  S  F  F  F  F  F  F  F  S  F  F  S  S  D  L  S  N  A  S  S  T  T  S  T  F  G  F  F  K  A  L  G  A  G  D  T  S  K  S </second_frame>
            <third_frame>   F  F  S  L  C   : V  L  K  F  Q  V  Y  *  F  N  E  E  K  *  F  N  T  *  A  A  L  L  R  *  K  V  L  N  S  G  Q  N  L  S  T  A  L  Q  T  S  C  P  R  T  N  Y  T  H  H  T  A  S  N  K  G  S  C  Y  A  A  D  *  L  Y  F  S  Y  R  H  L  Q  A  M  K  Y  K  N  R  K  H  L  K  I  *  I  E  N  S  L  M  D  *  N  T  Q  V  L  T  N  K  K  G  K  T  N  *  L  I  S  T  S  M  T  R  N  F  S  C  N  K  L  L  P  K  N  K  *  I  N  G  K  I  L  N  Y  M  T  C  I  L  T  Y  I  G  A  H  S  I  G  V  K  T  F  T  S  T  P  L  E  H  H  L  Y  S  S  F  S  S  Y  P  S  S  C  F  Y  F  L  H  R  H  F  Q  H  H  H  S  L  I  L  Y  L  S  S  F  S  F  S  S  S  R  T  S  P  H  L  R  M  Q  H  R  Y  S  L  C  P  S  F  S  F  P  F  S  Q  T  P  H  Q  G  M  Q  L  H  Q  L  L  S  S  F  S  S  S  F  L  F  S  V  Q  T  Y  P  M  L  P  R  L  P  L  P  L  V  S  L  K  H  W  V  Q  G  I  H  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88552" stop="88986"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INGKILNYMTCILTYIGAHSIGVKTFTSTPLEHHLYSSFSSYPSSCFYFLHRHFQHHHSLILYLSSFSFSSSRTSPHLRMQHRYSLCPSFSFPFSQTPHQGMQLHQLLSSFSSSFLFSVQTYPMLPRLPLPLVSLKHWVQGIHLN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="89070" PGL_stop="88333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89070" e_stop="88333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89070" e_stop="88333" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89070" stop="88438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89007" stop="88742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89007" stop="88742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89007" stop="88742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89007" stop="88742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88988" stop="88333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88934" stop="88409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88934" stop="88409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88934" stop="88419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436238" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88886" stop="88408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88753" stop="88435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGATGGTGCTGCAGTTGAGGTTGAGAAGAAAAAGAAGAAACACAAGGAAGATGATGAGGACGCTAACAAGAGAAAATTGGATGATTTAGATGTATCCCCTGCACCCAGTGCTTTAAAGAAACCAAAGGTAGAGGTAGTCGAGGAAGCATTGGATAAGTCTGAACTGAAAAAAGAAAAGAAGAAGAAAAAGAAGAAAGAAGCTGATGAAGCTGCATCCCCTGATGTGGAGTCTGTGAAAAAGGAAAAGAAAAAGAAGGACAAAGAGAATAACGATGTTGCATCCTCAGATGAGGAGAAGTCCGAGAAGAAGAAAAAGAAAAAGAAGAAAGATAAAGAATCAGAGAATGGTGATGTTGGAAGTGACGATGAAGGAAGTAAAAGCAAGAAGAAGGATAAGAAGAAAAAGAAGAATAAAGATGATGCTCAAGAGGAGTAGAGGTGAAGGTTTTTACCCCAATTGAGTGTGCTCCTATGTATGTTAAAATGCACGTCATGTAGTTCAAAATTTTGCCGTTTATTCACTTGTTTTTGGGCAGGAGTTTGTTGCAGCTGAAGTTCCTGGTCATAGACGTGCTTATTAGTTAATTAGTTTTACCTTTTTTATTTGTCAAGACTTGAGTATTTCAATCCATAAGGCTGTTTTCTATCTAAATTTTGAGATGTTTTCTGTTTTTGTACTTCATTGCCTGTAGATGTCTGTAGCTGAAATACAACTAATCAGCTGCATAACAACTGCC</gDNA_template>
            <first_frame> L  M  V  L  Q  L  R  L  R  R  K  R  R  N  T  R  K  M  M  R  T  L  T  R  E  N  W  M  I  *  M  Y  P  L  H  P  V  L  *  R  N  Q  R  *  R  *  S  R  K  H  W  I  S  L  N  *  K  K  K  R  R  R  K  R  R  K  K  L  M  K  L  H  P  L  M  W  S  L  *  K  R  K  R  K  R  R  T  K  R  I  T  M  L  H  P  Q  M  R  R  S  P  R  R  R  K  R  K  R  R  K  I  K  N  Q  R  M  V  M  L  E  V  T  M  K  E  V  K  A  R  R  R  I  R  R  K  R  R  I  K  M  M  L  K  R  S  R  G  E  G  F  Y  P  N  *  V  C  S  Y  V  C  *  N  A  R  H  V  V  Q  N  F  A  V  Y  S  L  V  F  G  Q  E  F  V  A  A  E  V  P  G  H  R  R  A  Y  *  L  I  S  F  T  F  F  I  C  Q  D  L  S  I  S  I  H  K  A  V  F  Y  L  N  F  E  M  F  S  V  F  V  L  H  C  L  *  M  S  V  A  E  I  Q  L  I  S  C  I  T  T  A </first_frame>
            <second_frame>  *  W  C  C  S  *  G  *  E  E  K  E  E  T  Q  G  R  *  *  G  R  *  Q  E  K  I  G  *  F  R  C  I  P  C  T  Q  C  F  K  E  T  K  G  R  G  S  R  G  S  I  G  *  V  *  T  E  K  R  K  E  E  E  K  E  E  R  S  *  *  S  C  I  P  *  C  G  V  C  E  K  G  K  E  K  E  G  Q  R  E  *  R  C  C  I  L  R  *  G  E  V  R  E  E  E  K  E  K  E  E  R  *  R  I  R  E  W  *  C  W  K  *  R  *  R  K  *  K  Q  E  E  G  *  E  E  K  E  E  *  R  *  C  S  R  G  V  E  V  K  V  F  T  P  I  E  C  A  P  M  Y  V  K  M  H  V  M  *  F  K  I  L  P  F  I  H  L  F  L  G  R  S  L  L  Q  L  K  F  L  V  I  D  V  L  I  S  *  L  V  L  P  F  L  F  V  K  T  *  V  F  Q  S  I  R  L  F  S  I  *  I  L  R  C  F  L  F  L  Y  F  I  A  C  R  C  L  *  L  K  Y  N  *  S  A  A  *  Q  L   </second_frame>
            <third_frame>   D  G  A  A  V  E  V  E  K  K  K  K  K  H  K  E  D  D  E  D  A  N  K  R  K  L  D  D  L  D  V  S  P  A  P  S  A  L  K  K  P  K  V  E  V  V  E  E  A  L  D  K  S  E  L  K  K  E  K  K  K  K  K  K  K  E  A  D  E  A  A  S  P  D  V  E  S  V  K  K  E  K  K  K  K  D  K  E  N  N  D  V  A  S  S  D  E  E  K  S  E  K  K  K  K  K  K  K  K  D  K  E  S  E  N  G  D  V  G  S  D  D  E  G  S  K  S  K  K  K  D  K  K  K  K  K  N  K  D  D  A  Q  E  E  *  R  *  R  F  L  P  Q  L  S  V  L  L  C  M  L  K  C  T  S  C  S  S  K  F  C  R  L  F  T  C  F  W  A  G  V  C  C  S  *  S  S  W  S  *  T  C  L  L  V  N  *  F  Y  L  F  Y  L  S  R  L  E  Y  F  N  P  *  G  C  F  L  S  K  F  *  D  V  F  C  F  C  T  S  L  P  V  D  V  C  S  *  N  T  T  N  Q  L  H  N  N  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89068" stop="88634"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGAAVEVEKKKKKHKEDDEDANKRKLDDLDVSPAPSALKKPKVEVVEEALDKSELKKEKKKKKKKEADEAASPDVESVKKEKKKKDKENNDVASSDEEKSEKKKKKKKKDKESENGDVGSDDEGSKSKKKDKKKKKNKDDAQEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 128 chains have been computed
$ 
$ memory statistics:
$ 238088 bytes spliced alignments in total
$ 105 spliced alignments have been stored
$ 2267 bytes was the average size of a spliced alignment
$ 28512 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1500 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 145 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:36:16
-->
