<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:48:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598464" ref_strand="+" ref_description="SGN-U598464 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118490015|gb|ABK96801.1| (e_value=9e-43) ACRE; (*ATH) AT1G29340.1 (e_value=4e-23)  Symbol: None | armadillo/beta-catenin repeat family protein / U-box domain-containing protein, contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain | chr1:10264381-10266804 FORWARD | Aliases: F15D2.34, F... ; (*SWP) sp|Q9C7R6|PUB17_ARATH (e_value=3e-22) U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17; ">
      <seq>tatagaatatacctatatttttccttttttggttctcttgtcaatccatacaagttttttgtacaaataataaatacccatttcgttcttggtcttaaattcaaacctttcttgatagttttttatcagaaaggtagaatcttggagttgtttttacagttttttttttggtatacccatatagatatctcactgaaatattgcaaaaataaaatcaanaaagcatttttcantgggaaacannaaaagggctggagttgatttttcaagattttggtgaaattgggtgtgggaaattgatggcatctgctgcaattttctcatcgttganaaaacaaaggtcgccnacnctggaagcgttcttggcgccggtggatctgacanatgttgggttgttgcaaactttaacggcgttatcttctganctgatttctgcatattcaggtaaaaggctgccgttttatcancggaanaattgtanntctttgttaaggaaaattcaagtattttctgttctcttggagtgtcttcttgagaataaaaagaacagaagtagtggttcttcanatttgccgtttacagcttttttgtgcttcaaggagttgtatttattgctttaccggtcgaaaatcttgcttgannattgctcttattcnagtaagttgtggctgttgctacaaaaccattcgatttcnggtcatttccangatttgaaccannaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="5333" stop="6657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5633" g_stop="6357" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-U598464" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5633" e_stop="6357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGAATATACCTATATTTTTCCTTTTTTGGTTCTCTTGTCAATCCATACAAGTTTTTTGTACAAATAATAAATACCCATTTCGTTCTTGGTCTTAAATTCAAACCTTTCTTGATAGTTTTTTATCAGAAAGGTAGAATCTTGGAGTTGTTTTTACAGTTTTTTTTTTGGTATACCCATATAGATATCTCACTGAAATATTGCAAAAATAAGATCAAGAAAGCATTTTTCAGTGGGAAACAAGAAAAGGGCTGGAGTTGATTTTTCAAGATTTTGGTGAAATTGGGTGTGGGAAATTGATGGCATCTGCTGCAATTTTCTCATCGTTGAGAAGACAAAGGTCGCCGACACTGGAAGCGTTCTTGGCGCCGGTGGATCTGACAGATGTTGGGTTGTTGCAAACTTTAACGGCGTTATCTTCTGAGCTGATTTCTGCATATTCAGGTAAAAGGCTGCCGTTTTATCAGCGGAAGAATTGTAAGTCTTTGTTAAGGAAAATTCAAGTATTTTCTGTTCTCTTGGAGTGTCTTCTTGAGAATAAAAAGAACAGAAGTAGTGGTTCTTCAGATTTGCCGTTTACAGCTTTTTTGTGCTTCAAGGAGTTGTATTTATTGCTTTACCGGTCGAAAATCTTGCTTGATTATTGCTCTTATTCAAGTAAGTTGTGGCTGTTGCTACAAAACCATTCGATTTCAGGTCATTTCCATGATTTGAACCAAGAAATC</genome_strand>
        <mrna_strand>TATAGAATATACCTATATTTTTCCTTTTTTGGTTCTCTTGTCAATCCATACAAGTTTTTTGTACAAATAATAAATACCCATTTCGTTCTTGGTCTTAAATTCAAACCTTTCTTGATAGTTTTTTATCAGAAAGGTAGAATCTTGGAGTTGTTTTTACAGTTTTTTTTTTGGTATACCCATATAGATATCTCACTGAAATATTGCAAAAATAAAATCAANAAAGCATTTTTCANTGGGAAACANNAAAAGGGCTGGAGTTGATTTTTCAAGATTTTGGTGAAATTGGGTGTGGGAAATTGATGGCATCTGCTGCAATTTTCTCATCGTTGANAAAACAAAGGTCGCCNACNCTGGAAGCGTTCTTGGCGCCGGTGGATCTGACANATGTTGGGTTGTTGCAAACTTTAACGGCGTTATCTTCTGANCTGATTTCTGCATATTCAGGTAAAAGGCTGCCGTTTTATCANCGGAANAATTGTANNTCTTTGTTAAGGAAAATTCAAGTATTTTCTGTTCTCTTGGAGTGTCTTCTTGAGAATAAAAAGAACAGAAGTAGTGGTTCTTCANATTTGCCGTTTACAGCTTTTTTGTGCTTCAAGGAGTTGTATTTATTGCTTTACCGGTCGAAAATCTTGCTTGANNATTGCTCTTATTCNAGTAAGTTGTGGCTGTTGCTACAAAACCATTCGATTTCNGGTCATTTCCANGATTTGAACCANNAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575342" ref_strand="+" ref_description="SGN-U575342 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|118490015|gb|ABK96801.1| (e_value=0) ACRE; (*ATH) AT1G29340.1 (e_value=1e-177)  Symbol: None | armadillo/beta-catenin repeat family protein / U-box domain-containing protein, contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain | chr1:10264381-10266804 FORWARD | Aliases: F15D2.34, F... ; (*SWP) sp|Q9C7R6|PUB17_ARATH (e_value=1e-176) U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17; ">
      <seq>ggttgaaattgttttctttcttgaatgagtttgagaatggtggtgttcctgactatgctcagttgtactctttttttgtggaaaaattggggattcgtaatcctaggagttgcagagttgagattgagtttttggaggagcagattgtgaaccatgaaggagatattgagcccacatcctcagttctcaacgggtttgtggcgttgatgcgatactgcaggtttttgctatttggctttgaagaggatgatatggggttgagattgggtaagcataagaagccgaagagagggctgattagtcaagagattgcagagacattcatttctgtaccaaaggacttctggtgtccgatatcgttggatttgatgagggatccagttattgtggcaacagggcagacatatgatcgagcttctatatcgaggtggatggaggagggtcactgtacttgcccaaagacagggcagttgcttgatcatacccggcttgtgccaaacagggctcttaggaatttgattatgcattggtgtgctgctcgcaaaattccctatgaccctctggagagtggggatccatgtgttgaatgttttccatcagcttcacctagcagggctgcactagaagctaataaagccacagcagctcttctgattaagcagctagagagtgggacgcagattgcaaaaactattgctgctcaggagataagacttttagctaaaactggtaaggagaatcgtgcatacatagctgaggctggtgcaatcccacatttgaagaatttgctttcatctccagatgctgtggcacaagaaaattccgtcactgcaatgcttaacttatcgatttttgataagaataaaggccgaattattgatgaagtagggtgtctggctttgatagttggagttttgagatttgggcacaccacagaggcacgggaaaatgctgcagcaacattattcagtctgtcagctgttcatgactataagaggcaaatagcaaaagaagatggggcagtcgaggccttagcgggtctgttgcgagaaggttctcccagagggaagaaagatgcagtaactgctctatttaatttatccacccacacagataattgtgcgaggatgatagagtctggagctgttactgctctagttggagctttgggaagtgaaggtgttgctgaagaagctgctggtgcattggcgctgattgttaggcagcaagttggtgctacagctgttggcaatgaggaaatggcagtagcagggctcattgcaatgatgcgatgtgggacaccaagagggaaggagaatgctgttgctgcattacttgaattatgcccccgtggtggagcagctgctactgagagggtcttgaaggcgccgtcattagcaagtttacttcagacgttgctctttacaggaacaaagcgcgcaaggaggaaagcagcatcgcttgctagagtattccaacggtgtgagcatgcagcagttcattatagtgggtttggtgtaggatatgcatttgctggaaactcagctgctgctagggattcaacttttcctggtgatgtctcagtgtccatgtccatttcagttccagtattataggggtacttaccaccattcatcttttgttcttagttttacttgtaatattcaaaaattctttcattgaaatataaacgcgacaaagaaagagagaaatcataggaataccacaaaattcatgtgttcttagcattttgcagaaaacagtgcctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="6191" stop="8559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6491" g_stop="8261" g_length="1771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1771" r_length="1771" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-U575342" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6491" e_stop="8261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAATTGTTTTCTTTCTTGAATGAGTTTGAGAATGGTGGTGTTCCTGACTATGCTCAGTTGTACTCTTTTTTTGTGGAAAAATTGGGGATTTGTAATCCTAGGAGTTGCAGAGTTGAGATTGAGTTTTTGGAGGAGCAGATTGTGAACCATGAAGGAGATATTGAGCCCACATCCTCAGTTCTCAACGGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGTTGTCCGATATCGTTGGATTTGATGAGGGATCCAGTTATTGTGGCAACAGGGCAGACATATGATCGAGCTTCTATATCGAGGTGGATGGAGGAGGGTCACTGTACTTGCCCAAAGACAGGGCAGTTGCTTGATCATACCCGGCTTGTGCCAAACAGGGCTCTTAGGAATTTGATTATGCATTGGTGTGCTGCTCGCAAAATTCCCTATGACCCTCTGGAGAGTGGGGATCCATGTGTTGAATGTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCGCGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAATACAGTGTTTCAA</genome_strand>
        <mrna_strand>GGTTGAAATTGTTTTCTTTCTTGAATGAGTTTGAGAATGGTGGTGTTCCTGACTATGCTCAGTTGTACTCTTTTTTTGTGGAAAAATTGGGGATTCGTAATCCTAGGAGTTGCAGAGTTGAGATTGAGTTTTTGGAGGAGCAGATTGTGAACCATGAAGGAGATATTGAGCCCACATCCTCAGTTCTCAACGGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGGTGTCCGATATCGTTGGATTTGATGAGGGATCCAGTTATTGTGGCAACAGGGCAGACATATGATCGAGCTTCTATATCGAGGTGGATGGAGGAGGGTCACTGTACTTGCCCAAAGACAGGGCAGTTGCTTGATCATACCCGGCTTGTGCCAAACAGGGCTCTTAGGAATTTGATTATGCATTGGTGTGCTGCTCGCAAAATTCCCTATGACCCTCTGGAGAGTGGGGATCCATGTGTTGAATGTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCCCCGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAAAACAGTGCCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602684" ref_strand="+" ref_description="SGN-U602684 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354695|emb|CAO48013.1| (e_value=3e-67) unnamed; (*ATH) AT2G47010.2 (e_value=2e-60) | Symbol: None | expressed protein | chr2:19324195-19326467 FORWARD | Aliases: None; ">
      <seq>gctccccttttaatttcattttcttggttcaatttgctttctcttttgctaatcaatgtgtatgttttgggggttttctccttaagtcttgatggaaatgatgactacatttcagctgttggagattcagggatgcgacgcgacgggctaagagtggccatacaggcattaaatcaatgcaatgaggttggagaagaaaccccaaaaatgggaagcccaagggctgctgattgctttgatgttcaaaacaaagcctctgctcagcaacagaatccaaacaggctgctacaacataaagtgactgaggaagataacaagttaggcataggaaaatcatttccaggactgacgaaacgagcgttgaacaacgtagacctttatgcagcagagaaagaagtatacttgggatcaaaatgtcaagttgatgacaagccaaatccatggcaattctggacgatcaggcttaagagtggtaacatggatactcgtgctggtaaatgcccgaaaaatggacacaaaataggtccattcgatccttctggcgaatttgaatgttttggcaaaggatgtatgaatcagccattgatgtaccacaattacacaactttacaagggacaacccttaaaggggaatttcatggaacctgggatttaaatgcctggttcgagtgcaaacatgaacccctctttttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="20629" stop="19253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20336" g_stop="20066" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20065" i_stop="19976" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19975" g_stop="19553" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="695" r_length="424" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-U602684" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20336" e_stop="20066"/>
          <exon e_start="19975" e_stop="19553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAATTTAGAATTTCATTTTCTTGGTTCAATTTGCTTTCTCTTTTGCTAATCAATGTGTATGTTTTGGGGGTTTTCTCCTTAAGTCTTGATGGAAATGATGACTACATTTCAGCTGTTGGAGATTCAGGGATGCGACGCGACGGGCTAAGAGTGGCCATAGAGGCATTAAATCAATGCAATGAGGTTGGAGAAGAAACCCCAAAAATGGGAAGCCCAAGGGCTGCTGATTGCTTTGATGTTCAAAACAAAGCCTCTGCTCAGCAACAGAGTGAGTTGAATTTCTCTGTTTTCTTGATTTTGTTATGTTTGAAATGGTTGGTGTTTTTATATGAGAGAATTTGTTGTGTCTGTGGTGCAGATCCAAACAGGCTGCTACAACATAAAGTGACTGAGGAAGATAACAAGTTAGGCATAGGAAAATCATTTCCAGGACTGACGAAACGAGCGTTGAACAACGTAGACCTTTATGCAGCAGAGAAAGAAGTATACTTGGGATCAAAATGTCAAGTTGATGACAAGCCAAATCCATGGCAATTCTGGACGATCAGGCTTAAGAGTGGTAACATGGATACTCGTGCTGGTAAATGCCCGAAAAATGGACACAAAGTAGGTCCATTCGATCCTTCTGGCGAATTTGAATGTTTTGGCAAAGGATGTATGAATCAGCCATTGATGTACCACAATTACACAACTTTACAAGGGACAACCCTTAAAGGGGAATTTCATGGAACATGGGATTTGAATG-CTGGTTCGAGTGCAAACATGAACACCTCTTTTTATT</genome_strand>
        <mrna_strand>GCTCCCCTTTTAATTTCATTTTCTTGGTTCAATTTGCTTTCTCTTTTGCTAATCAATGTGTATGTTTTGGGGGTTTTCTCCTTAAGTCTTGATGGAAATGATGACTACATTTCAGCTGTTGGAGATTCAGGGATGCGACGCGACGGGCTAAGAGTGGCCATACAGGCATTAAATCAATGCAATGAGGTTGGAGAAGAAACCCCAAAAATGGGAAGCCCAAGGGCTGCTGATTGCTTTGATGTTCAAAACAAAGCCTCTGCTCAGCAACAGA..........................................................................................ATCCAAACAGGCTGCTACAACATAAAGTGACTGAGGAAGATAACAAGTTAGGCATAGGAAAATCATTTCCAGGACTGACGAAACGAGCGTTGAACAACGTAGACCTTTATGCAGCAGAGAAAGAAGTATACTTGGGATCAAAATGTCAAGTTGATGACAAGCCAAATCCATGGCAATTCTGGACGATCAGGCTTAAGAGTGGTAACATGGATACTCGTGCTGGTAAATGCCCGAAAAATGGACACAAAATAGGTCCATTCGATCCTTCTGGCGAATTTGAATGTTTTGGCAAAGGATGTATGAATCAGCCATTGATGTACCACAATTACACAACTTTACAAGGGACAACCCTTAAAGGGGAATTTCATGGAACCTGGGATTTAAATGCCTGGTTCGAGTGCAAACATGAACCCCTCTTTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565090" ref_strand="+" ref_description="SGN-U565090 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157354693|emb|CAO48011.1| (e_value=6e-17) unnamed; (*ATH) AT2G29760.1 (e_value=2e-11) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr2:12719961-12722177 FORWARD | Aliases: T27A16.14, T27A16_14; ">
      <seq>aaattacagacattgcttattgctgcttctaggatcttagctgcttgttatagtttaccacaaactgtttgcttctgttacaaaaaaagccatttctatcaatataagcaacagtttggttttcataaagaaagacaaaccccattcttcaccagactggatcatctgtcagttgctacaagaagtattttgtccttgttacagtattatcccttcaccagccaagaactcatgaacaactccatcaacttcaatcatactacaaccaggctctttagttatcccctcgctcctcatctttctacgcacttccctcacaatcatcccatctccccatagatgcaagggcatttgatagttgaacataaccagcactgtcgcgaggatcaacctctaaaagtttggaagcgatgcgctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="29612" stop="30629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29912" g_stop="30329" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-U565090" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29912" e_stop="30329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTACAGACATTGCTTATTGCTGCTTCTAGGATCTTAGCTGCTTGTTATAGTTTACCACAAACTGTTTGCTTCTGTTACAAAAAAAGCCATTTCTATCAATATAAGCAACAGTTTGGTTTTCATAAAGAAAGACAAACCCCATTCTTCACCAGACTGGATCATCTGTCAGTTGCTACAAGAAGTATTTTGTCCTTGTTACAGTATTAT-CCTTCACCAGCCAAGAACTCATGAACAACTCCATCAACTTCAATCATACTACAACCAGGCTCTTTAGTTATCCCCTCGCTCCTCATCTTTCTACGCACTTCCCTCAC-ATCATCCCATCTCCCCATAGATGCAAGGGCATTTGATAGTTGAACATAACCAGCACTGTCGCGAGGATCAACCTCTAAAAGTTTGGTAGCGATGCGCTCTG</genome_strand>
        <mrna_strand>AAATTACAGACATTGCTTATTGCTGCTTCTAGGATCTTAGCTGCTTGTTATAGTTTACCACAAACTGTTTGCTTCTGTTACAAAAAAAGCCATTTCTATCAATATAAGCAACAGTTTGGTTTTCATAAAGAAAGACAAACCCCATTCTTCACCAGACTGGATCATCTGTCAGTTGCTACAAGAAGTATTTTGTCCTTGTTACAGTATTATCCCTTCACCAGCCAAGAACTCATGAACAACTCCATCAACTTCAATCATACTACAACCAGGCTCTTTAGTTATCCCCTCGCTCCTCATCTTTCTACGCACTTCCCTCACAATCATCCCATCTCCCCATAGATGCAAGGGCATTTGATAGTTGAACATAACCAGCACTGTCGCGAGGATCAACCTCTAAAAGTTTGGAAGCGATGCGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603828" ref_strand="+" ref_description="SGN-U603828 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354693|emb|CAO48011.1| (e_value=9e-57) unnamed; (*ATH) AT4G18840.1 (e_value=5e-54) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr4:10338730-10340367 REVERSE | Aliases: F13C5.10, F13C5_10; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=7e-35) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12; ">
      <seq>agggagtataacttatatcaagcacaacaaatgcggcttctaacaagtagtaccaaaacacaatactcaaatggcggcaacttccccaacaccatcaaccctctcatccttcttagagatggcgaattccatctccgaactccaccaagctcacgctgtcatgctcaaaactggtctctttcgtgacccttttgctgccagtcgcctcttgactaaagccactgttcttcccttatcttccactgaaaccctttcatatgcactctctgttttcactcacattgaagaacccaactcatatatctacaacactatcatccgtgcttattccactagcccctttccacaactagcacttattatcttcctcaaaatgttaaactctgtaaataaagttttcccagataagtacactttaacatttattgtaaaagcttgtgctactatggaaaatgctaaacaaggtgaacaagttcatgggttggtgacaaaaattggacttgaggaagatgtgtatgtatacaacactttggttcatatgtatgcgaaatgtgggtgttttggagtttcgcgtggtatgattgatgggttgattgaanatgatgttatagcatgnaatgcattgttgagtgtgtatgcagaaagggggttgtttgaattggcgcgtgagttgtttgatgaaatgnctgtgaaaaatgtggagtcttggaattttatggtttctgggtatgtgaatgttgggttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="32088" stop="30743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31788" g_stop="31043" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-U603828" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31788" e_stop="31043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGTATAACTTATATCAAGCACAACAAATGCGGCTTCTAACAAGTAGTACCAAAACACAATACTCAAATGGCGGCAACTTCCCCAACACCATCAACCCTCTCATCCTTCTTAGAGATGGCGAATTCCATCTCCGAACTCCACCAAGCTCACGCTGTCATGCTCAAAACTGGTCTCTTTCGTGACCCTTTTGCTGCCAGTCGCCTCTTGACTAAAGCCACTGTTCTTCCCTTATCTTCCACTGAAACCCTTTCATATGCACTCTCTGTTTTCACTCACATTGAAGAACCCAACTCATATATCTACAACACTATCATCCGTGCTTATTCCACTAGCCCCTTTCCACAACTAGCACTTATTATCTTCCTCAAAATGTTAAACTCTGTAAATAAAGTTTTCCCAGATAAGTACACTTTAACATTTATTGTAAAAGCTTGTGCTACTATGGAAAATGCTAAACAAGGTGAACAAGTTCATGGGTTGGTGACAAAAATTGGACTTGAGGAAGATGTGTATGTATACAACACTTTGGTTCATATGTATGCGAAATGTGGGTGTTTTGGAGTTTCGCGTGGTATGATTGATGGGTTGATTGAAGATGATGTTATAGCATGGAATGCATTGTTGAGTGTGTATGCAGAAAGGGGGTTGTTTGAATTGGCGCGTGAGTTGTTTGATGAAATGCCTGTGAAAAATGTGGAGTCTTGGAATTTTATGGTTTCTGGGTATGTGAATGTTGGGTTGG</genome_strand>
        <mrna_strand>AGGGAGTATAACTTATATCAAGCACAACAAATGCGGCTTCTAACAAGTAGTACCAAAACACAATACTCAAATGGCGGCAACTTCCCCAACACCATCAACCCTCTCATCCTTCTTAGAGATGGCGAATTCCATCTCCGAACTCCACCAAGCTCACGCTGTCATGCTCAAAACTGGTCTCTTTCGTGACCCTTTTGCTGCCAGTCGCCTCTTGACTAAAGCCACTGTTCTTCCCTTATCTTCCACTGAAACCCTTTCATATGCACTCTCTGTTTTCACTCACATTGAAGAACCCAACTCATATATCTACAACACTATCATCCGTGCTTATTCCACTAGCCCCTTTCCACAACTAGCACTTATTATCTTCCTCAAAATGTTAAACTCTGTAAATAAAGTTTTCCCAGATAAGTACACTTTAACATTTATTGTAAAAGCTTGTGCTACTATGGAAAATGCTAAACAAGGTGAACAAGTTCATGGGTTGGTGACAAAAATTGGACTTGAGGAAGATGTGTATGTATACAACACTTTGGTTCATATGTATGCGAAATGTGGGTGTTTTGGAGTTTCGCGTGGTATGATTGATGGGTTGATTGAANATGATGTTATAGCATGNAATGCATTGTTGAGTGTGTATGCAGAAAGGGGGTTGTTTGAATTGGCGCGTGAGTTGTTTGATGAAATGNCTGTGAAAAATGTGGAGTCTTGGAATTTTATGGTTTCTGGGTATGTGAATGTTGGGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595255" ref_strand="+" ref_description="SGN-U595255 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|5821138|dbj|BAA83711.1| (e_value=5e-62) heat shock factor [Nicotiana tabacum]; (*ATH) AT4G18880.1 (e_value=1e-49)  Symbol: None | heat shock transcription factor 21 (HSF21), identical to heat shock transcription factor 21 (Arabidopsis thaliana) GI:3399765; contains Pfam profile: PF00447 HSF-type DNA-binding domain | chr4:10347593-10349573 REVERSE | Aliases: F13C... ; (*SWP) sp|O49403|HFA4A_ARATH (e_value=1e-48) Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A; ">
      <seq>agcaagtagtctctagtgtggggttctggaaacaagcatgtagtctgtgatcaggtgagatttgcttgaatttgattgtaacgcagcgagatctagctcattacgatccttacgaggagttttctggagtgtgatgataagaagttttgctcttagtagatgttctgtttcgttgttttagtttaggggttgtgattttcgttgaaacctatcatggatgaagcttcgtgcagcacgaatgcactgcctccttttattgcaaagacatatgaaatggtggatgatccatcctgtgatgctattgtctcctggagttcgaataataaaagcttcattgtgtggaatcctccagattttgcaagagatttgttgcctagatacttcaagcacaataatttttccagctttatcagacaactaaacacttatggattcaggaaaattgaccctgaaaaatgggagttcgcgaatgaaggtaatttcattagaggtcagccgaaccttttgaagaatatccataggcgtaaacctgttcatagtcattctgcacagaatcttcatggcctgtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="35050" stop="33783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34750" g_stop="34322" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34321" i_stop="34226" i_length="96">
            <donor d_prob="0.659" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34225" g_stop="34083" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="572" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-U595255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34750" e_stop="34322"/>
          <exon e_start="34225" e_stop="34083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGTAGTCTCTAGTGTGGGGTTCTGGAAACAAGCATGTAGTCTGTGATCAGGTGAGATTTGCTTGAATTTGATTGTAACGCAGCGAGATCTAGCTCATTACGATCCTTACGAGGAGTTTTCTGGAGTGTGATGATAAGAAGTTTTGCTCTTAGTAGATGTTCTGTTTCGTTGTTTTAGTTTAGGGGTTGTGATTTTCGTTGAAACCTATCATGGATGAAGCTTCGTGCAGCACGAATGCACTGCCTCCTTTTATTGCAAAGACATATGAAATGGTGGATGATCCATCCTGTGATGCTATTGTCTCCTGGAGTTCGAATAATAAAAGCTTCATTGTGTGGAATCCTCCAGATTTTGCAAGAGATTTGTTGCCTAGATACTTCAAGCACAATAATTTTTCCAGCTTTATCAGACAACTAAACACTTATGTAAGTGAGTTAGTTGCCCTCACATGATTCTTTGTTTCTATCAGTTTTATCTTATTTGTTAGTATTCACATGCATTTGGCTTCTTTTGTGCATCAGGGATTCAGGAAAATTGACCCTGAAAAATGGGAGTTCGCGAATGAAGGTAATTTCATTAGAGGTCAGCCGAACCTTTTGAAGAATATCCATAGGCGTAAACCTGTTCATAGTCATTCTGCACAGAATCTTCATGGCCTGTCATC</genome_strand>
        <mrna_strand>AGCAAGTAGTCTCTAGTGTGGGGTTCTGGAAACAAGCATGTAGTCTGTGATCAGGTGAGATTTGCTTGAATTTGATTGTAACGCAGCGAGATCTAGCTCATTACGATCCTTACGAGGAGTTTTCTGGAGTGTGATGATAAGAAGTTTTGCTCTTAGTAGATGTTCTGTTTCGTTGTTTTAGTTTAGGGGTTGTGATTTTCGTTGAAACCTATCATGGATGAAGCTTCGTGCAGCACGAATGCACTGCCTCCTTTTATTGCAAAGACATATGAAATGGTGGATGATCCATCCTGTGATGCTATTGTCTCCTGGAGTTCGAATAATAAAAGCTTCATTGTGTGGAATCCTCCAGATTTTGCAAGAGATTTGTTGCCTAGATACTTCAAGCACAATAATTTTTCCAGCTTTATCAGACAACTAAACACTTAT................................................................................................GGATTCAGGAAAATTGACCCTGAAAAATGGGAGTTCGCGAATGAAGGTAATTTCATTAGAGGTCAGCCGAACCTTTTGAAGAATATCCATAGGCGTAAACCTGTTCATAGTCATTCTGCACAGAATCTTCATGGCCTGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567832" ref_strand="+" ref_description="SGN-U567832 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>taagccctagaaaaattgcacaaattccgatgtttttttttaataatcctcacggatcccaagaaacataactaaatcctctaaagtaccaaccaactggtatttcatttcaaattgagtttagctctctgattgagtttagctctctgaggaaaaatttgatcttgattgtgattctgggttacaaattgaaaaaagggctgatttctttttgcattttttgagctttggaaaatgttgggtttctacaaatgattgcggaagtgttagctttggttggttacagggtggaaaaaggtgtagaatttcttgaaattgtgaggttatgttgggattgacttgtcaagattgcggttgacaataggagttttgggtaatatgttggtttgggggtgaataccttctggaatgtttgagaagatgcttccttttttaaaaaaaaaataaattaaaaaatgacacatttgaagtttcttttagttgacaataggaagaaagatattcgggaatgttgaatttgtatcacctggaaacttagatttatatataagataagaataagaatctgttttcacatttgagcaagtagtctctagtgtggggttctggaaacaagcatgtagtctgtgatcaggtgagatttgcttgaatttgattgtaacgcagcgagatctagctcattacgatccttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="35822" stop="34337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35522" g_stop="35372" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35371" i_stop="35181" i_length="191">
            <donor d_prob="0.578" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35180" g_stop="34637" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="694" r_length="543" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-U567832" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35522" e_stop="35372"/>
          <exon e_start="35180" e_stop="34637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCCCTAGAAAAATTGCACAAATTCCGATGTTTTTTTTTAATAATCCTCACGGATCCCAAGAAACATAACTAAATCCTCTAAAGTACCAACCAACTGGTATTTCATTTCAAATTGAGTTTAGCTCTCTGATTGAGTTTAGCTCTCTGAGGTAAATTGTTTTTTAATTTCTGATGGTGTATAATTTGGATGCTTTTGCGTGAAGTTTGGTACACCCATGACTTTTTAATTTTATTTTAATAACGACTTTGATGTAATGGATTTGGAAAATTTATCTGATGGACTTTTCTTCTTCTTACTTTTTCTTGTCCAATTTTGACTGTTGTTTAGTTGTGAATGCAGGAAAAATTTGATCTTGATTGTGATTCTGGGTTACAAATTGAAAAAAGGGCTGATTTCTTTTTGCATTTTTTGAGCTTTGGAAAATGTTGGGTTTCTACAAATGATTGCGGAAGTGTTAGCTTTGGTTGGTTACAGGGTGGAAAAAGGTGTAGAATTTCTTGAAATTGTGAGGTTATGTTGGGATTGACTTGTCAAGATTGCGGTTGACAATAGGAGTTTTGGGTAATATGTTGGTTTGGGGGTGAATACCTTCTGGAATGTTTGAGAAGATGCTTCCTTTTTTTAAAAAAAAAATAAAATAAAAAATGACACATTTGAAGTTTCTTTTAGTTGACAATAGGAAGAAAGATATTCGGGAATGTTGAATTTGTATCACCTGGAAACTTAGATTTATATATAAGATAAGAATAAGAATCTGTTTTCACATTTGAGCAAGTAGTCTCTAGTGTGGGGTTCTGGAAACAAGCATGTAGTCTGTGATCAGGTGAGATTTGCTTGAATTTGATTGTAACGCAGCGAGATCTAGCTCATTACGATCCTTACG</genome_strand>
        <mrna_strand>TAAGCCCTAGAAAAATTGCACAAATTCCGATGTTTTTTTTTAATAATCCTCACGGATCCCAAGAAACATAACTAAATCCTCTAAAGTACCAACCAACTGGTATTTCATTTCAAATTGAGTTTAGCTCTCTGATTGAGTTTAGCTCTCTGAG...............................................................................................................................................................................................GAAAAATTTGATCTTGATTGTGATTCTGGGTTACAAATTGAAAAAAGGGCTGATTTCTTTTTGCATTTTTTGAGCTTTGGAAAATGTTGGGTTTCTACAAATGATTGCGGAAGTGTTAGCTTTGGTTGGTTACAGGGTGGAAAAAGGTGTAGAATTTCTTGAAATTGTGAGGTTATGTTGGGATTGACTTGTCAAGATTGCGGTTGACAATAGGAGTTTTGGGTAATATGTTGGTTTGGGGGTGAATACCTTCTGGAATGTTTGAGAAGATGCTTCC-TTTTTTAAAAAAAAAATAAATTAAAAAATGACACATTTGAAGTTTCTTTTAGTTGACAATAGGAAGAAAGATATTCGGGAATGTTGAATTTGTATCACCTGGAAACTTAGATTTATATATAAGATAAGAATAAGAATCTGTTTTCACATTTGAGCAAGTAGTCTCTAGTGTGGGGTTCTGGAAACAAGCATGTAGTCTGTGATCAGGTGAGATTTGCTTGAATTTGATTGTAACGCAGCGAGATCTAGCTCATTACGATCCTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U579427" ref_strand="+" ref_description="SGN-U579427 Tomato 200607#2 [10 ESTs aligned] (*GB) gi|157354691|emb|CAO48009.1| (e_value=2e-92) unnamed; (*ATH) AT1G78700.1 (e_value=5e-80) | Symbol: None | brassinosteroid signalling positive regulator-related, contains similarity to BZR1 protein (Arabidopsis thaliana) gi:20270971:gb:AAM18490 | chr1:29604242-29606575 FORWARD | Aliases: F9K20.26, F9K20_26; (*SWP) sp|Q9ZV88|BEH4_ARATH (e_value=5e-79) BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4; ">
      <seq>gtcttattagttttttcctttcaatttccaggttttgcaagcccggtccagaagtaaaccggtcgaagaattttaatccggtttaagtcttccattgcggagcaatcgacggcgttgtaatgacttccggcacgaggctaccgacatggaaggagagagagaataataagcggagagagcggcggcggagggcgatcgccgctaagatcttcgccggattaaggatgtatggtaactataagctaccgaagcactgtgataataacgaggtattgaaagctctgtgtaaagaggctggttggattgttgaagaagatggaactacttacagaaagggatgcaagccagttacacgcattgatatcggtggttctgtttctgtaagcagttcatcttaccaactcagccctggtgcttcatataatccgagtccggtttcatcatctatccctagcccggtctcatcccattatgttgccaatgtccaaaataattctgatccgaactctcttattccttggcttaagaacctgtcatctggctcatcaccatccttgtctaattttccccatcatctgtgcattcctggaggttctataagtgctcctgtgactccacctttgagctctcccactgccagtactcccaggatgaatgataattgggaaaatcccacggccaactctacatggatacaacagcattatcccttcttgccatcctcaacccctcctagtccaggtcgccaaaccccaccggattcaggatggctctctggtgttcaaactccacaagatgggccttcatctcccactttcagccttgtctcgtcaaatccatttggatttaaggagccattatcaaatggagggtctcgaatgtggacacctgggcaaagtgggacgtgttcacctgcagttggaccttgtatggaccaaacagctgatgtaccaatgtcggatgctatctcagcagagtttgcatttggcagcaatatgaaaggtgtagtcaagccatgggaaggagaaagaattcatgaagagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="41679" stop="46909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41979" g_stop="42313" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42314" i_stop="45899" i_length="3586">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45900" g_stop="46609" g_length="710"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="1045" r_length="710" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-U579427" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1045</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U579427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41979" e_stop="42313"/>
          <exon e_start="45900" e_stop="46609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTATTAGTTTTTTCCTTTCAATTTCCAGGTTTTGCAAGCCCGGTCCAGAAGTAAACCGGTCGAAGAATTTTAATCCGGTTTAAGTCTTCCATTGCGGAGCAATCGACGGCGTTGTAATGACTTCCGGCACGAGGCTACCGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAGGTAAACTACTTTTTCCTCAAATATCACCATTTGTGCAAATATATAGCAATTAGTAAAGGCGAATTAAGCGGAATATATCTTTTAATTTCTTACTAGTTTTTTTTTGCTTTTGAAGATTACTGCTTCATTTACGCAACGAGAGGTTCGGGTTTAGTAAATTAGTTCTATTTTCATAGCCAAATTTAGAGGAAAAAGCATAAGATTGAAAAGACGAATCATCTCCATAGATTTGTTCTGCTTCGTGTATTTTGTGCACAGTCACAGAAGTCTGAACATTTCACCCAGATGTTAATTGGACGATATTACCCCTGTGTAACTTCTAGGGTCCCACTTTTTACTTTGAATTTGATGGGCTGTATGGACATTTCAGCCTGATTCCAGGGTTTTACCAGTCCTGAGTTTCTAAATCCTGAATCTGCAGTCTATTTATGAAGGGTAGTTTAGTAATCTAATCCTATTGTACAATTGTATATTCATGAAAGTACAACACCTTGATGCATGCTATCAGAATCCAAGTCTCTGAAAAGAAAAATGTTACTCGTCCTTTTTATGTGACACTATTTGACCGAGTATTGAGTTTATAAAAGAAAAGAACTTGAAATATTTGGTTTTTAATATGCAAATATCATTTCTGTGGCTATAGACTTTTGATACTTGTAATTTTAAATACAACATCATGTTTTTGTGACTATACAACTTTTTAAAATTGTAATTTGAACATGTATAGAAGCTTGTTGTTAAGGATAAAATGAGATGAAGTTAAATCATTTCCTTATTTAAAGAAGGGGCATTTTATCAAGTCATCCTGTCGTAGCTTAAAGCATAAAGTAGAGAAGCGACGAATTGTGGTCCCATAGGCGCTTTATAGTCAAATATAATGAGCAGTGGGTTCTATGAATCTCAACTTTGAGGAGTTGGATTAATGTAAGCACTATTGTTTAAGGTATACTGCATCTGAAGTTTGTTGCTATTTTATTTGTAATTTGATTATTATAGAGAAGTGTACTCTTCACTTCTCACTTTTCGCGACAACGCCCATGGACTTTATTGTTCTTTTGTGCTGCTTGCTTTTGAAAACGCGGGGAAGGTGTCATTCTATTTTGGAACATACTAAAAAGGAAAATAGGTTCACTTAAACAATGAGTAATATTTCTTGTGGTCTATTTAAATCCTTGCTGGACAGAACTAAACCACCAATATGAGGAAACAAAAAGACATCAACTCTTTGGTTCCATTATTGTTGTTGGTTCCTTTTTATCTTTATTTTATTCCCATATTTATTTTCCTAATTATAGTTGAGGCTGTAGAGCGTGTGGGGGTATTTTTAGCTGGGTTTATGGTTTTATCATATAGTTGACATTATCATTGGATATGGACACCCTTTCTCAAAAGTTGTTGGAATGGTAGGGTTACAGTGGTATAATATTTTTTACTGCCATCATTCTATGGGTTGTTTTGGCAATAGGGTTTTGTCCAATTTTTATGTGTGTATTTGGATGCTTTTATCATTAACATATAGGACTTTAGTGGTCATATTATTCAAGTCTTGATCAATGGGATGAGAGAGTGGACCCACATAACATGATTGCTATGGCTGAAAGTTGAAAAACAGCTATTTGAGAATACGCAAGATAATGGCAATAAGGATTTTGGATTTTTTTTTCCAACTAGCCGTCAAGTTGGGCCTAAATTAGGAAATTTAAAGGCCAAGAATAGATGTGGTTGGGCAGATAAATGGTTTTAAATGGTTACTACAGTAGGAGTTTAAAACATGGAGTTCGAAATAATTCGGTACAAGTTGAAGATTGCTTTACGAAGATAGACTTGGCTCTTTTTGGACAAGAGAATACTCTTCATCTTGATGCGGGTAATTTGGCTTTTTCACATACATCGTTAGCCATTTCAAGCTACTGAAAATCTTGTGTTGGGGGAAAATAATGCACTGAAATGTTTAATTTAATAATCCACAAGTCTCAATTTAATATTTCTAGTTTGACAGATGCATCTATTAGATTTAGGGACAATATTTAAATATTTGAATTGTCCTAATTAAAAAAAAAAGAGTTGAACATTTGAATTGTTTATGGATTATTAGTTAGAAAGATGTAGGTTCATATGTTGACCCTGTTGCATGTGGAGTATAATGTAGAGGAGAATTGTGATAAAAATAGCAAACTTTGGGTCCCGCATAACTGTTACTATATGAAGCTGAAGACATTGCTTAAAGGGACACCATTATGCTGAGGTTTTGAAAGCGAGTATCTCCTGGGACAAATAATATTTTAACTACGTTCTATAATTTCTTGGTTGCTTCTTTGGACAGCAACCTTACTTTTAATTACCGAGCTACTGTTACATCTACTTGAAACTCTGTGGTTGACCTTAACTGGAAAATTTCTTTAAAATGTGTAAAGAAATAAGGAATTCTGCAATAAATGTGGATGGCTTTTTGGTTCTTGTTCATTATTGTTTCTCTTAGTCACTGTTTTGACTTGGTAGCCACCAAATGTATTAGCCGTGATACAGGTTATCGTAAAAGGTCATTACATTGTGTTGCTAGCTTTTTTGCCAAATTATTAGGTGCAAGAACTATCATGTGGTGGATACCAAACACAAACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGAAGGGAGAAGTTGGTTGGTCAATGTGGTGGGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACACCCATGTCCACACGACTAGTGTGTGGGATCCATGTCCGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATTGATGGGGAAAATCTGGACAATTTTAATGATACTAATACAAAAGCTAAGGGAAATTGAAGAAAAATGGAATACCTTGTATATAGAAATTTTTATGTCTACTTTAATCTCCTTCACTATTCTCCTCAAGTTTTTCACATAATATCTCATAATTTAGGTTTTATTTCTCTATTTTAGATATTTTAATTATTTTTAGGCAAATACCCACACCCATATCCGTAAATGGATTCATATCCCCAAATCTTAAGAATTAGATCATGAAAAATCCAACCTCTAGATCTGCAATTGTATCGGACATCCGCACCCGAGTCCAAGCAACTTAGGATGTAGGTACTTCTCATTCCATAACAAAATCTATATGCTCATTTTCAAGAGCGAGAGCTTCTGATTTCGATAGGGATTTTGGTGCTGCTGATAGATGTATGCAGATCAGCGGATATATTACTGAGTAACTGGTGTATCAATGCACTCTTTTGTTGGATCATTGATGTATATCTGGTATAAGTAAAACCAAGTTACACTTCACCTCTAATTTAAGTAGTTGCGGTCATGTAAAATGAACAATTTTAAGCTTTAAAAAGATCTGGAGACCTCGTTAATCATATAATCTTTCAACTCAGGGCATTGCAAATTTTAGTTCTCTTTCTGCTATTATAGCATAGTTTTGGGGAAGGGTTTGCTATTAGTATTATTATTTGATTTGCCCCTTTATTGCTGCTTATCATTTGTTCTCTTCAGCAGGGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAGCAGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAACAGCATTATCCCTTCTTGCCATCCTCAACCCCTCCTAGTCCAGGTCGCCAAACCCCACCGGATTCAGGATGGCTCTCTGGTGTTCAAACTCCACAGGATGGGCCTTCATCTCCCACTTTCAGCCTTGTCTCGTCAAATCCATTTGGATTTAAGGAGCCATTATCAAATGGAGGGTCTCGAATGTGGACACCTGGGCAAAGTGGGACGTGTTCACCTGCAGTTGGACCTTGTATGGACCAAACAGCTGATGTACCAATGTCGGATGCTATCTCAGCAGAGTTTGCATTTGGCAGCAATATGAAAGGTGTAGTCAAGCCATGGGAAGGAGAAAGAATTCATGAAGAGTG</genome_strand>
        <mrna_strand>GTCTTATTAGTTTTTTCCTTTCAATTTCCAGGTTTTGCAAGCCCGGTCCAGAAGTAAACCGGTCGAAGAATTTTAATCCGGTTTAAGTCTTCCATTGCGGAGCAATCGACGGCGTTGTAATGACTTCCGGCACGAGGCTACCGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAGCAGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAACAGCATTATCCCTTCTTGCCATCCTCAACCCCTCCTAGTCCAGGTCGCCAAACCCCACCGGATTCAGGATGGCTCTCTGGTGTTCAAACTCCACAAGATGGGCCTTCATCTCCCACTTTCAGCCTTGTCTCGTCAAATCCATTTGGATTTAAGGAGCCATTATCAAATGGAGGGTCTCGAATGTGGACACCTGGGCAAAGTGGGACGTGTTCACCTGCAGTTGGACCTTGTATGGACCAAACAGCTGATGTACCAATGTCGGATGCTATCTCAGCAGAGTTTGCATTTGGCAGCAATATGAAAGGTGTAGTCAAGCCATGGGAAGGAGAAAGAATTCATGAAGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568370" ref_strand="+" ref_description="SGN-U568370 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ccggaaagatgtaggttcatatgttgaccctgttgcttgtggcctataatgtagaggagaattgtgataaaaatagcaaactttgggtcccgcataactgttactatatgaagctgaagacattgcttaaagggacatcgttatgctgaggttttgaaagagagtatctcctgggatgaataatattttaactacgttctataatttcttggttgcttctttggacagcaaacttacttttaattactgagctactgttacatctacttgaaactctgtggttgaccttaactggaaaatttctttaaaatgtgtaaagaaataaggaattctgcaacaaatatggatctctttttggttcttgttcattattgtttctcttagtcactgttttgacttggtagccaccaaatgtattagccgtgatacaggttatcataaaaggtcattacattgtgttgctagcttttttgccaaattattaggtgcaagaactatcatgtggtggataccaaacacaaacagggcattgtactctgaatctactgacatgttttttttcttgacgggagaagttggttggtcaatgtggtgagaagttggttccgacaaatatgtgcacctttacaggaacatagatatagtctaagttgctcgggctcttcacttttggtgccacattcatgtccacacgacaagtgtgtgggatccatgtctgattgggtcaacggattttggtctttgaccaaaatcgatggggttggacaattttaatgatactaatacaaaagctaaggggaaattgaagaaaaatggaataccttgtatatagaaatttttatgtcactccttttcctttaatctccttcactattctcctcaagttttccacataatatctcataatttaggttttatttctctattttagatattttaattatttttaggcaaatacccacacccgtatccatacatgaattcatatccccgaatcttaaaaattagatcatgaaaaatccaacctctagatctgcaaccgtatcggacatccgcacccgagtccgagcaacttaggatgtaggtagtcctcattccataccaaaatctatatgctcatttcaagagcaagagcttctgatttcgatagggattttggtgctgtttatagatgtatgcaaatcagcggatatattactaagtaactagggaatcaatgcactcttttgttggagcattgatgtatataagggataagtaaaaccaagttacacttcacctctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="44112" stop="45990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44409" g_stop="45703" g_length="1295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1298" r_length="1298" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-U568370" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>1295</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44409" e_stop="45703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAAAGATGTAGGTTCATATGTTGACCCTGTTGCATGTGGAGTATAATGTAGAGGAGAATTGTGATAAAAATAGCAAACTTTGGGTCCCGCATAACTGTTACTATATGAAGCTGAAGACATTGCTTAAAGGGACACCATTATGCTGAGGTTTTGAAAGCGAGTATCTCCTGGGACAAATAATATTTTAACTACGTTCTATAATTTCTTGGTTGCTTCTTTGGACAGCAACCTTACTTTTAATTACCGAGCTACTGTTACATCTACTTGAAACTCTGTGGTTGACCTTAACTGGAAAATTTCTTTAAAATGTGTAAAGAAATAAGGAATTCTGCAATAAATGTGGATGGCTTTTTGGTTCTTGTTCATTATTGTTTCTCTTAGTCACTGTTTTGACTTGGTAGCCACCAAATGTATTAGCCGTGATACAGGTTATCGTAAAAGGTCATTACATTGTGTTGCTAGCTTTTTTGCCAAATTATTAGGTGCAAGAACTATCATGTGGTGGATACCAAACACAAACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGAAGGGAGAAGTTGGTTGGTCAATGTGGTGGGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACACCCATGTCCACACGACTAGTGTGTGGGATCCATGTCCGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATTGATGGGGAAAATCTGGACAATTTTAATGATACTAATACAAAAGCTAA-GGGAAATTGAAGAAAAATGGAATACCTTGTATATAGAAATTTTTATG----T-C---TACTTTAATCTCCTTCACTATTCTCCTCAAGTTTTTCACATAATATCTCATAATTTAGGTTTTATTTCTCTATTTTAGATATTTTAATTATTTTTAGGCAAATACCCACACCCATATCCGTAAATGGATTCATATCCCCAAATCTTAAGAATTAGATCATGAAAAATCCAACCTCTAGATCTGCAATTGTATCGGACATCCGCACCCGAGTCCAAGCAACTTAGGATGTAGGTACTTCTCATTCCATAACAAAATCTATATGCTCATTTTCAAGAGCGAGAGCTTCTGATTTCGATAGGGATTTTGGTGCTGCTGATAGATGTATGCAGATCAGCGGATATATTACTGAGTAACTGGTGTATCAATGCACTCTTTTGTTGGATCATTGATGTATATCTGGTATAAGTAAAACCAAGTTACACTTCACCTCTAATTTAAGTAGTTGC</genome_strand>
        <mrna_strand>CCGGAAAGATGTAGGTTCATATGTTGACCCTGTTGCTTGTGGCCTATAATGTAGAGGAGAATTGTGATAAAAATAGCAAACTTTGGGTCCCGCATAACTGTTACTATATGAAGCTGAAGACATTGCTTAAAGGGACATCGTTATGCTGAGGTTTTGAAAGAGAGTATCTCCTGGGATGAATAATATTTTAACTACGTTCTATAATTTCTTGGTTGCTTCTTTGGACAGCAAACTTACTTTTAATTACTGAGCTACTGTTACATCTACTTGAAACTCTGTGGTTGACCTTAACTGGAAAATTTCTTTAAAATGTGTAAAGAAATAAGGAATTCTGCAACAAATATGGATCTCTTTTTGGTTCTTGTTCATTATTGTTTCTCTTAGTCACTGTTTTGACTTGGTAGCCACCAAATGTATTAGCCGTGATACAGGTTATCATAAAAGGTCATTACATTGTGTTGCTAGCTTTTTTGCCAAATTATTAGGTGCAAGAACTATCATGTGGTGGATACCAAACACAAACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGACGGGAGAAGTTGGTTGGTCAATGTGGTGAGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACATTCATGTCCACACGACAAGTGTGTGGGATCCATGTCTGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATCGATGGGG----T-TGGACAATTTTAATGATACTAATACAAAAGCTAAGGGGAAATTGAAGAAAAATGGAATACCTTGTATATAGAAATTTTTATGTCACTCCTTTTCCTTTAATCTCCTTCACTATTCTCCTCAAGTTTTCCACATAATATCTCATAATTTAGGTTTTATTTCTCTATTTTAGATATTTTAATTATTTTTAGGCAAATACCCACACCCGTATCCATACATGAATTCATATCCCCGAATCTTAAAAATTAGATCATGAAAAATCCAACCTCTAGATCTGCAACCGTATCGGACATCCGCACCCGAGTCCGAGCAACTTAGGATGTAGGTAGTCCTCATTCCATACCAAAATCTATATGCTCA-TTTCAAGAGCAAGAGCTTCTGATTTCGATAGGGATTTTGGTGCTGTTTATAGATGTATGCAAATCAGCGGATATATTACTAAGTAACTAGGGAATCAATGCACTCTTTTGTTGGAGCATTGATGTATATAAGGGATAAGTAAAACCAAGTTACACTTCACCTCTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564493" ref_strand="+" ref_description="SGN-U564493 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|157354690|emb|CAO48008.1| (e_value=2e-180) unnamed; (*ATH) AT1G29800.1 (e_value=1e-173)  Symbol: None | similar to zinc finger (FYVE type) family protein [Arabidopsis thaliana] (TAIR:At3g43230.1); similar to LAs17 Binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53663.1); contains InterPro domain Zn-finger, FYVE type... ; (*SWP) sp|P43603|LSB3_YEAST (e_value=5e-25) LAS seventeen-binding protein 3 OS=Saccharomyces cerevisiae GN=LSB3; ">
      <seq>atcgtctaatcaatcaaaactctatattctctccttcaaagtctcatccaatttctcaaaaagataaaactgtaggagaaaaaaaaagaagatttatatatatattgattatgaggtaatttaatttaatttatttatttatcgaccaaaagatgttgaaataatggagccccatcacaattcggattccaagtttgctactccaggagaagttgatccttcttcgacttcttattctagggtttctaatccacttgttcaatcggactgtagtaagtttggagataacagaggcctggatgattttgatccagtcataggttcaaacattgtaaaaacgggtaagcatgaagaatataacatagtagctgtacacctaatgaatggaactcccaagaacacaagtttgatgagtcgtctagatactcaagctgaggaacttttcagtaaacagtcatttcatgacactggagaagctagtgagaggtatcatatggatggatggaaagggaaatctgaagaagattctataactctgagacagaacaatatcttgaggagttctgagaagattattagcagcaactgtgataaaagtagaaaatgtggttccgaatcatttggtcaaagtgcaggtcatggaaacaaggataagagttatatcatgggcaagccagtgggtggacagcaagaaactgatcatgattcacctttgtgcacaaaagaaaactatgagaaggaggcacacacaactaatggaatggttaaagctgaagtctctaatgttaatttaactcaacagactaacggaagtgacataaaaataaatcttctgtacccacaattagctgaaaatatagattgtgcaactcagtcatctcaaaatgcagaaggaagtatatgccaccaaaatcaagaaaaatatttctgctacgattcgccactttttggtgaaactggggcttggatacctgtatcagttcctccaatgtcggagagtgagcatgatgagtggagtagaggtttctgctcaaatggtgggtaccttcctgaaggtgacacagattggaatcagtgcatgggagaagacaaggagttgaccatgtgggatgtggttctggatatgttgctcgcagcacgaggaaaagtgcagtcccttgcatctggtgatatagttggtaacatgtcgtggatatcaagccatctcattgagcaggcttggaaagagatggctcaaaccctcacagaagctaatttcggtaatgcccaggaaattcttgaggcagatcctcctaaatggctgcctgacagtgcatcttccacttgtatgttgtgtaatgtgcggttccaccctatcatgtgcagcaagcatcattgtcgattttgtggaggattattttgcaatgaatgtactaaaggaaggagcttgctccctgaaaaatttcgcactggggaaccacaacgagtatgtgatgtatgttttgtacgtctcgagtctgtgcagccatacctaatggatcaagtaagtcgtgctgctcagttgccaacccatgacctcactgacttgagcacactgagatcctgggtaaacttcccatggggacagtcaatggagtatgaaatttataaggctgctaacactattcggggctatgagaagattggtttattgagttctgagaagagaattccagaagctattctacaaaatgcaagaggccttgccattcttacggtcgtgaaagttggagtgatggtaacctacaacatcggaactggattggtaattgcacgtacagaagatggttcatggtctcccccgtcggccatttcttctttcggtgtaggatggggtgctcaggttggtggagaacttactgacttcattattgtcctgagaactagtgatgctgtcaagacttttggtggtgatgcacatctttcaattggagctggtgtgagtgctgctgcggggatcattggacgaactgctgaagctgatcttcgtgccggtactgctggttatgccgcttgttatacatacagctgcagtaaaggtgcctttgttgggtgttccctgcaagggagtgttgtgactacccgaacacgggaaaactccagattttatggtagccaatcaataaaagcttcagaaattctacttggctcattgccaagaccccctgctgcagccgccctatatcgtgcactgactgatttataccagaagctctgaatatacatctttaagtgtgttgtacataacgtttgggttcaaaatttggacttgattactgttattctttgtgaattatgattaaatagatatagtgatttgtagagtctggctggcagaaagaaaaattgtaaatataatcatgatctttgcttggagaatattcaagctcaattaaatctattggcaatttggcattcactatggaaagggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="53161" stop="47182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52861" g_stop="52597" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52596" i_stop="51108" i_length="1489">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="49713" g_length="1395"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="1660" r_length="1395" r_score="0.999"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49712" i_stop="49372" i_length="341">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49371" g_stop="49171" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1661" r_stop="1861" r_length="201" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49170" i_stop="48511" i_length="660">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48510" g_stop="48315" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1862" r_stop="2057" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48314" i_stop="47879" i_length="436">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47878" g_stop="47482" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="2058" r_stop="2454" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-U564493" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52861" e_stop="52597"/>
          <exon e_start="51107" e_stop="49713"/>
          <exon e_start="49371" e_stop="49171"/>
          <exon e_start="48510" e_stop="48315"/>
          <exon e_start="47878" e_stop="47482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTCTAATCAATCAAAACTCTATATTCTCTCCTTCAAAGTCTCATCCAATTTCTCAAAAAGATAAAACTGTAGGAGAAAAAAAAAGAAGATTTATATATATATTGATTATGAGGTAATTTAATTTAATTTATTTATTTATCGACCAAAAGATGTTGAAATAATGGAGCCCCATCACAATTCGGATTCCAAGTTTGCTACTCCAGGAGAAGTTGATCCTTCTTCGACTTCTTATTCTAGGGTTTCTAATCCACTTGTTCAATCGGTAATTCTCTCTGCAATTCTTCGTATTTTATCATTGATTGATTTTTTAATAGTTTTTTGGATTTGTTGTATATGCTTTGCTGTTCGATTTGGTTGAACTTTGATTGGACGAACCGATATTTGTTTGAGCTGCTGTTTAATCAAACTTTGACTGGTGCAGAGTTTTGGGTTTGTTTCAATTGCATAAAGTTATTGTCTTTATTAGAATAATTGTCGGTGTTTCAATAATTATGGTTTTGGTTAGTTGTTGAAGTTATTGTTGAGATCATCGAAGAAATTTGGGCTATTTTGCTACCCAAGGGCCTAGTGGTTAATGATTTGGGTTGGGGACGGTGAGGTCCGCATGTTATAATCCCAGCAGAGACAAAAACACCAAGCTGATCTCGTTTTATCTGTTTTAGCGGTGGACTGTGTGGGTACCTATCCCAGGCGGGGGGGGGGGGGTGGCAGTTATACTGTGGATTAGCCGATTGCCTTACCCGCTTTTAGAGTTGGATATGGTGTGTTGGATATCGATTGCCATATCCATATCAAAACTTTTGATAGGAATCCCTGGACAAACCGTCTGTAGTAGCATGCCAACCCAACAGAACTCCGAATCTCTGACATTCAGGTGGGCCTAGCCCCAATCACGGACCGCCTTAATTTTCACTAGGTGTGGAATTAGCCGATCGGGACACCACAGTTATCAAAAGAGAATTGGCCTATTTTAGTGAATTGATGAGCTTTCAGGAGTGTAAAAATGTGGATTTTGTTATGTTACAACTTATATCATTCCTATGGAGATTTGCCTTTATAAAAAAAACACAGTAATACAGGCAATGAGATTTCTCTGTAGAAGTTATAGTTTTGAGGTTTTGTTTATTTAAAGTAAATAATCAAAGGATTTAGGGGTGCGATTATCTGTGGAAAGTAAACTTGTCATCGACATACAATGACAAGATGAATTTCCTTCGTTTCTCTTTTTTTTTCCTGGGTGGGTGGGTGGGTGGTTCCAAGGGTGATTAAAAATTCAGAATCAGAAGTATAAATCATAACAAGTAAAAGTAGCTGCTGCTGCTGATGAATATTGAATACTTTTCTGCTACAACTTAGCTGTCACTCATTCTGTCAACAATGGTAGAGAAGTGACTTTCTAGTTTTTTTTAATCACGAAAAGAAGTTCAAAACATTCAACTGTAAGTAAGTAGGCATTTTTGAAAGTTCTCTTCGCCAAAAAGTAAACGAATAGTCATGTGCTGGAAGTTTTAGTTATATGCTGATAGTTACTACTTGTCTCTTCATTGGCCTGTCCCGTTTCAAATTGTTGAGCTCTTTTCTTTTGTTGGGTGAAGTAGAGATATTTGCCAATTGTTAGTAGTTACTTGTTCTAATGTTATCCTATTTATTAATTCATTCATGTTGGTTAAAAGTTACAGCATTTTGTAAGTGCAAGCAAAATTTTAATGTTTGACATGAGAATGCACGCTTACCATGTTTTTTGGTAATAGGACTGTAGTAAGTTTGGAGATAACAGAGGCCTGGATGATTTTGATCCAGTCATAGGTTCAAACATTGTAAAAACGGGTAAGCATGAAGAATATAACATAGTAGCTGTACACCTAATGAATGGAACTCCCAAGAACACAAGTTTGATGAGTCGTCTAGATACTCAAGCTGAGGAACTTTTCAGTAAACAGTCATTTCATGACACTGGAGAAGCTAGTGAGAGGTATCATATGGATGGATGGAAAGGGAAATCTGAAGAAGATTCTATAACTCTGAGACAGAACAATATCTTGAGGAGTTCTGAGAAGATTATTAGCAGCAACTGTGATAAAAGTAGAAAATGTGGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATATAGATTGTGCAACTCAGTCATCTCAAAATGCAGAAGGAAGTATATGCCACCAAAATCAAGAAAAATATTTCTGCTACGATTCGCCACTTTTTGGTGAAACTGGGGCTTGGATACCTGTATCAGTTCCTCCAATGTCGGAGAGTGAGCATGATGAGTGGAGTAGAGGTTTCTGCTCAAATGGTGGGTACCTTCCTGAAGGTGACACAGATTGGAATCAGTGCATGGGAGAAGACAAGGAGTTGACCATGTGGGATGTGGTTCTGGATATGTTGCTCGCAGCACGAGGAAAAGTGCAGTCCCTTGCATCTGGTGATATAGTTGGTAACATGTCGTGGATATCAAGCCATCTCATTGAGCAGGCTTGGAAAGAGATGGCTCAAACCCTCACAGAAGCTAATTTCGGTAATGCCCAGGAAATTCTTGAGGCAGATCCTCCTAAATGGCTGCCTGACAGTGCATCTTCCACTTGTATGTTGTGTAATGTGCGGTTCCACCCTATCATGTGCAGCAGGCATCATTGTCGATTTTGTGGAGGATTATTTTGCAATGAATGTACTAAAGGAAGGAGCTTGCTCCCTGAAAAATTTCGCACTGGGGAACCACAACGAGTATGTGATGTATGTTTTGTACGTCTCGAGTCTGTGCAGCCATACCTAATGGATCAAGTAAGTCGTGCTGCTCAGTTGCCAACCCATGACCTCACTGACTTGAGCACACTGAGATCCTGGGTAAACTTCCCATGGGGACAGTCAATGGAGTATGAAATTTATAAGGCTGCTAACACTATTCGGGGCTATGAGAAGGTATGAAGTTCTATCTTATGTGTTAAATGTTGCATCTCTTACATATCTACTTATTCATACTACTGAAGCAAACACTACTTCCTCATACTCCTGAAGCAAACACTGATATCTCACCCCACAATATGTATATCCCCCAGCTATATACTTCAGTCTGATTTAAAGAAACCAATTGCTGCATCATTGTTCTACTTAACTTTCTAGTCTCTCATCCACCTTTTTGGAGTTCTACTGATATGCATCTTATATGTAAAAATAAGCAAGCATACTCTTTGTTATTTAATTTCTTGATATCTACAATGATATACCGGCTGGCCTGAAATATTCTGAACAAAAAATTTCAGATTGGTTTATTGAGTTCTGAGAAGAGAATTCCAGAAGCTATTCTACAAAATGCAAGAGGCCTTGCCATTCTTACGGTCGTGAAAGTTGGAGTGATGGTAACCTACAACATCGGAACTGGATTGGTAATTGCACGTAGAGAAGATGGTTCATGGTCTCCCCCGTCGGCCATTTCTTCTTTCGGTGTAGGATGGGGTGCTCAGGTGAATAAATTTACTGCTATATTTCTGCTAAATGTAGTTAAGGATTATTCCTACCTGTATATAGTGGTATAGATAAAGAGGATTCATATGGCTGCCAACTTTGCTTATTTGTATTGAGAAGCATTTGTCATTCCTGTATAGAGTAGTGGTGCAGATATAGAGGATTCATATGACTGGCAACTAATTTTGGATAGAGGATAATTGTCACTTCGCTTATCTTTATTGAGAGGCATTTGTCATTTTAGGAAGAAATAATAGATCTGAGCGTTGCATATGGCTACCCATGGACGGTGGTGTCTTAATTGGCACATGTGGAATCCTTACCCAGTGACTTTTGGATGTTATCCATGATCATGGATAACTCTAGGCAAATTCAAATACCATCTTGAGATGATTTGGGATGAAAATGAAGTTCTTTGCAGTTCTGCACTGGGTTTCATATTGAACCCTGTTCGTTTCTGTTTAGAGTTGAACATCAGAGAATGATGCCTGTTCAGTAGTCAGATACTAGAGAGAATTATCAATTTGTTGAAAGTTCCAGCTTTTCTGTTCTTTCTTTAATGTAGTTTCTTCAAGAAGTGTCTAAGTTTGTTAGGAGGTTAATATCTTTTCAGACGAACTTGCCATCAGTAAATCATAAAACAGATTTCTATTTTGTAGGTTGGTGGAGAACTTACTGACTTCATTATTGTCCTGAGAACTAGTGATGCTGTCAAGACTTTTGGTGGTGATGCACATCTTTCAGTTGGAGCTGGTGTGAGTGCTGCTGCGGGGATCATTGGACGAACTGCTGAAGCTGATCTTCGTGCCGGTACTGCTGGTTATGCCGCTTGTTATACATACAGCTGCAGTAAAGGTATCAAGTCCACTTTGTTTATGACTCAGCATATATTGTGCATGCTGTTCTTTGATCTGTATGTTCTGTTATTGCAAGATATAGTTGGCATGTGTTGTATATCTGCTTTCTATATCAACACGATTGTTAATAGCCAGACAATATTCATCTAATTATATTCCACACTCTTGCCTGTGGAAATAAGTTTGGAATAATCAAATGTGCAGTAAACTTGCTCATCAGAAAATGATCATAGAATTTTTGTTGATGTTAATTTAACTTTAAAAGAGTTCAGTAAAGATAGTGAGCCTCAAACCAATTTTTCTGACTGAATTTATAATGAATAGACCTTTTATTTATATAACTGGAAGTCAAGTTGATGCTTTCTCTCTAGGCCTAGTTATATCTTGTATCCAATGTTGAAAGTGTGCTATGCTTCTTTTTTTTTTGGGTACAGGTGCCTTTGTTGGGTGTTCCCTGCAAGGGAGTGTTGTGACTACCCGAACACGGGAAAACTCCAGATTTTATGGTAGCCAATCAATAAAAGCTTCAGAAATTCTACTTGGCTCATTGCCAAGACCCCCTGCTGCAGCCGCCCTATATCGTGCACTGACTGATTTATACCAGAAGCTCTGAATATACATCTTTAAGTGTGTTGTACATAACGTTTGGGTTCAAAATTTGGACTTGATTACTGTTATTCTTTGTGAATTATGATTAAATAGATATAGTGATTTGTAGAGTCTGGCTGGCAGAAAGAAAAATTGTAAATATAATCATGATCTTTGCTTGGAGAATATTCAAGCTCAATTAAATCTATTGGCAATTTGGCATTCACTATGGAAAGGGAAAAA</genome_strand>
        <mrna_strand>ATCGTCTAATCAATCAAAACTCTATATTCTCTCCTTCAAAGTCTCATCCAATTTCTCAAAAAGATAAAACTGTAGGAGAAAAAAAAAGAAGATTTATATATATATTGATTATGAGGTAATTTAATTTAATTTATTTATTTATCGACCAAAAGATGTTGAAATAATGGAGCCCCATCACAATTCGGATTCCAAGTTTGCTACTCCAGGAGAAGTTGATCCTTCTTCGACTTCTTATTCTAGGGTTTCTAATCCACTTGTTCAATCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGTAGTAAGTTTGGAGATAACAGAGGCCTGGATGATTTTGATCCAGTCATAGGTTCAAACATTGTAAAAACGGGTAAGCATGAAGAATATAACATAGTAGCTGTACACCTAATGAATGGAACTCCCAAGAACACAAGTTTGATGAGTCGTCTAGATACTCAAGCTGAGGAACTTTTCAGTAAACAGTCATTTCATGACACTGGAGAAGCTAGTGAGAGGTATCATATGGATGGATGGAAAGGGAAATCTGAAGAAGATTCTATAACTCTGAGACAGAACAATATCTTGAGGAGTTCTGAGAAGATTATTAGCAGCAACTGTGATAAAAGTAGAAAATGTGGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATATAGATTGTGCAACTCAGTCATCTCAAAATGCAGAAGGAAGTATATGCCACCAAAATCAAGAAAAATATTTCTGCTACGATTCGCCACTTTTTGGTGAAACTGGGGCTTGGATACCTGTATCAGTTCCTCCAATGTCGGAGAGTGAGCATGATGAGTGGAGTAGAGGTTTCTGCTCAAATGGTGGGTACCTTCCTGAAGGTGACACAGATTGGAATCAGTGCATGGGAGAAGACAAGGAGTTGACCATGTGGGATGTGGTTCTGGATATGTTGCTCGCAGCACGAGGAAAAGTGCAGTCCCTTGCATCTGGTGATATAGTTGGTAACATGTCGTGGATATCAAGCCATCTCATTGAGCAGGCTTGGAAAGAGATGGCTCAAACCCTCACAGAAGCTAATTTCGGTAATGCCCAGGAAATTCTTGAGGCAGATCCTCCTAAATGGCTGCCTGACAGTGCATCTTCCACTTGTATGTTGTGTAATGTGCGGTTCCACCCTATCATGTGCAGCAAGCATCATTGTCGATTTTGTGGAGGATTATTTTGCAATGAATGTACTAAAGGAAGGAGCTTGCTCCCTGAAAAATTTCGCACTGGGGAACCACAACGAGTATGTGATGTATGTTTTGTACGTCTCGAGTCTGTGCAGCCATACCTAATGGATCAAGTAAGTCGTGCTGCTCAGTTGCCAACCCATGACCTCACTGACTTGAGCACACTGAGATCCTGGGTAAACTTCCCATGGGGACAGTCAATGGAGTATGAAATTTATAAGGCTGCTAACACTATTCGGGGCTATGAGAAG.....................................................................................................................................................................................................................................................................................................................................................ATTGGTTTATTGAGTTCTGAGAAGAGAATTCCAGAAGCTATTCTACAAAATGCAAGAGGCCTTGCCATTCTTACGGTCGTGAAAGTTGGAGTGATGGTAACCTACAACATCGGAACTGGATTGGTAATTGCACGTACAGAAGATGGTTCATGGTCTCCCCCGTCGGCCATTTCTTCTTTCGGTGTAGGATGGGGTGCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGGAGAACTTACTGACTTCATTATTGTCCTGAGAACTAGTGATGCTGTCAAGACTTTTGGTGGTGATGCACATCTTTCAATTGGAGCTGGTGTGAGTGCTGCTGCGGGGATCATTGGACGAACTGCTGAAGCTGATCTTCGTGCCGGTACTGCTGGTTATGCCGCTTGTTATACATACAGCTGCAGTAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCTTTGTTGGGTGTTCCCTGCAAGGGAGTGTTGTGACTACCCGAACACGGGAAAACTCCAGATTTTATGGTAGCCAATCAATAAAAGCTTCAGAAATTCTACTTGGCTCATTGCCAAGACCCCCTGCTGCAGCCGCCCTATATCGTGCACTGACTGATTTATACCAGAAGCTCTGAATATACATCTTTAAGTGTGTTGTACATAACGTTTGGGTTCAAAATTTGGACTTGATTACTGTTATTCTTTGTGAATTATGATTAAATAGATATAGTGATTTGTAGAGTCTGGCTGGCAGAAAGAAAAATTGTAAATATAATCATGATCTTTGCTTGGAGAATATTCAAGCTCAATTAAATCTATTGGCAATTTGGCATTCACTATGGAAAGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575541" ref_strand="+" ref_description="SGN-U575541 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>ggccgattcccatggggatccgaccataattaagtaaccaaaatatctcttataacacaagggagaaaaaaaaaattaaattgaaaaagggttaggctttctgttacaaaaaatggtgcaaaccttgcaacaatattcatggttggcatgatagctgcatcgatctcaataatggcaatcgttatatttgcgtgtgcaaaatcctccacgaaacgtaaaaataaaaataattcatatagtcggggtgatgggggtgatgataataaagcacaaaaaactcgtgcaaaaaaaaaaatgttagttagcactatcgaaattgcaacaactatcgtggatattccatctacttttgatgtttgcgataataataatgatggtgcgaaagatactcgatgtcatgatggcgatacaatgaaaaatgaagttagtattgatcgtaacgataataattatgttagcggtgacaataataataataatatgggtacaagtcatactcatgatgttagcacaaatagtactagtggtggaggtggtggtcatcatcatggtgatacaagtgggaatactggtggtggttggagcaatgatcacggtggtgctagttggagtggcggcaatcacggtggtggcggttttagtggtggtggtaatactggtggttttaggggtggaggttggtgataacaaatttaggtgcaattctataaatgtaaaagtcaattaaaaattttgacatttgtttggtactactataatgttgtaattttctcaaaatccattcatatttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="57424" stop="56058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57124" g_stop="56358" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="792" r_length="767" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-U575541" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U575541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57124" e_stop="56358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTAAGTAACCAAAATATCTCTTATAACACAAGGGAGAAAAAAAAAATTAGATTGAAAAATGGTTAGGCTTTCTGTTACAAAAAATGGTGCAAACCTTGCAACAATATTCATGGTTGGCATGATAGCTGCATCGATCTCGATGATGGCGATCGTTATATTTGCGTGTGCAAAATCCTCCACGAAACGTAAGAATAAGAATAATTCATATAGTCGTGGTGATGGTGGTGATGATAATAAAGCACAAAAAACTCGTGCAAAAGAAGAAATGTTAGTTAGCACTATCGAAATTGCAACAACTATCGTGGATATTCCATCTACTTTTGATGTTTGCGATAATAATAATGATGGTGCGAAAGATACTCGATGTCATGATGGCGATACAATGAAAAATGAAGTTAGTATTGATCGTAACGATAATAATTATGTTAGCGGTGACAATAATAATAATAATATGGGTACAAGTCATACTCATGATGTTAGCACAAATAGTACTAGTGGTGGAGGTGGTGGTCATCATCATGGTGATACAAGTGGGAATACTGGTGGTGGTTGGAGCAATGATCACGGTGGTGCTAGTTGGAGTGGCGGCGATCACGGTGGTGGCGGTTTTAGTGGTGGTGGTGATACTGGTGGTTTTAGTGGTGGAGGTTGGTGATCACGAATTTAGGTGCAATTCTATAAATGTAAAAGTCAATTAAAAATTTTGACATTTGTTTGGTACTACTATAATGTTGTAATTTTCTCAAAATCCATTCATATTTAA</genome_strand>
        <mrna_strand>ATAATTAAGTAACCAAAATATCTCTTATAACACAAGGGAGAAAAAAAAAATTAAATTGAAAAAGGGTTAGGCTTTCTGTTACAAAAAATGGTGCAAACCTTGCAACAATATTCATGGTTGGCATGATAGCTGCATCGATCTCAATAATGGCAATCGTTATATTTGCGTGTGCAAAATCCTCCACGAAACGTAAAAATAAAAATAATTCATATAGTCGGGGTGATGGGGGTGATGATAATAAAGCACAAAAAACTCGTGCAAAAAAAAAAATGTTAGTTAGCACTATCGAAATTGCAACAACTATCGTGGATATTCCATCTACTTTTGATGTTTGCGATAATAATAATGATGGTGCGAAAGATACTCGATGTCATGATGGCGATACAATGAAAAATGAAGTTAGTATTGATCGTAACGATAATAATTATGTTAGCGGTGACAATAATAATAATAATATGGGTACAAGTCATACTCATGATGTTAGCACAAATAGTACTAGTGGTGGAGGTGGTGGTCATCATCATGGTGATACAAGTGGGAATACTGGTGGTGGTTGGAGCAATGATCACGGTGGTGCTAGTTGGAGTGGCGGCAATCACGGTGGTGGCGGTTTTAGTGGTGGTGGTAATACTGGTGGTTTTAGGGGTGGAGGTTGGTGATAACAAATTTAGGTGCAATTCTATAAATGTAAAAGTCAATTAAAAATTTTGACATTTGTTTGGTACTACTATAATGTTGTAATTTTCTCAAAATCCATTCATATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574540" ref_strand="+" ref_description="SGN-U574540 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>gtgtttttttgtttttttatagtaaatatattaagtagatatatataatatatacaacgatattaaaattaagttaattatatgtgctaagctagagcacaaagtactactagagtacgtacataactcacaagaacaaacatacacaaatatataacaactagagcaaaggcctttacgaattgcacacaatttaccatatcgaaatccacaagcacatatagtgtttttttttttttcgtggggttcaagccagtttatacacgccttgactaacgtaggataagtgacggaagtatttccttaacaagcataacactagggcaagtttttcccctgccaccatcaacattattattacccattcttcttctactaccaattgatcttgaagtagcagtacttgtactgctacaagcaatttctcctccaccagcaacaacaacacccgttggcgtcgtcggcctaggcttttcgaagcaattattagtagaaccaaacacggccattgacatcattgggatcgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="59772" stop="60889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60060" g_stop="60589" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-U574540" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60060" e_stop="60589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTACATAATCTTGTTATAGTAAATATATTAAGTAGATATATATAATATATACAACGATATTAAAATTAAGTTAATTATATGTGCTAAGCTAGAGCACAAAGTACTACTAGAGTACGTACATAACTCACAAGAACAAACATACACAAATATATAACAACTAGAGCAAAGGCCTTTACGAATTGCACACAATTTACCATATCGAAATCCACAAGCACATATAGTGTTTTTTTTTTTTTCGTGGTGTTCAAGCCAGTTTATACACGCCTTGACTAACGTAGGATAAGTGACGGAAGTATTTCCTTAACAAGCATAACACTAGGGCAAGTTTTTCCCCTGCCACCATCAACATTATTATTACCCATTCTTCTTCTACTACCAATTGATCTTGAAGTAGCAGTACTTGTACTGCTACAAGCAATTTCTCCTCCACCAGCAACAACAACACCCGTTGGCGTCGTCGGCCTAGGCTTTTCGAAGCAATTATTAGTAGAACCAAACACGGCCATTGACATCATTGGGATCGACC</genome_strand>
        <mrna_strand>GTGT-TTTTTTGTTTTTTTATAGTAAATATATTAAGTAGATATATATAATATATACAACGATATTAAAATTAAGTTAATTATATGTGCTAAGCTAGAGCACAAAGTACTACTAGAGTACGTACATAACTCACAAGAACAAACATACACAAATATATAACAACTAGAGCAAAGGCCTTTACGAATTGCACACAATTTACCATATCGAAATCCACAAGCACATATAGTGTTTTTTTTTTTTTCGTGGGGTTCAAGCCAGTTTATACACGCCTTGACTAACGTAGGATAAGTGACGGAAGTATTTCCTTAACAAGCATAACACTAGGGCAAGTTTTTCCCCTGCCACCATCAACATTATTATTACCCATTCTTCTTCTACTACCAATTGATCTTGAAGTAGCAGTACTTGTACTGCTACAAGCAATTTCTCCTCCACCAGCAACAACAACACCCGTTGGCGTCGTCGGCCTAGGCTTTTCGAAGCAATTATTAGTAGAACCAAACACGGCCATTGACATCATTGGGATCGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583437" ref_strand="+" ref_description="SGN-U583437 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|157354689|emb|CAO48007.1| (e_value=7e-12) unnamed; ">
      <seq>tgagaggnatccatggctaatattccggagaanttntgcgaatcancctttntgctnttnnnttgccgatgaaaatgcacattagaactcttagtacccaactcttacttgtactgtttcttctacttgttttatcaaaagggtttgttgtgggagatctagttcgaaagccattgggtagtagcagaaggagaaactccaatcgggtacccgaatgtggcaatttcgggtcaaaatctgattgctcgcaaaaccaaaattgtcgatggtgcaaaagtgttgttcttgatgacgcttgtttcttcaaatctgaagctgctagattaccctctcagatcttcacttgtaatcttcttagattgagataaaagttacctttttttccaattatgttgttttttatcccttgaattttgagtttttgggtgaagttcatttgagctgtgttatgagtgagtacgttttctgtttttaggcttaccattatgcttttgaagaagtaaaaagatgtgcttttgtaaataattgtgtttgaaaaatgaaaaattgagtggtgctttctgatatactagagagaccagttgatttgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="61547" stop="62739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61847" g_stop="62439" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-U583437" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61847" e_stop="62439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGGAATCCATGGCTAATATTCCGGAGAAATTCTGCGAATCAACCTTTTTGCTCTTCTTTTGCCGATGAAAATGCACATTAGAACTCTTAGTACCCAACTCTTACTTGTACTGTTTCTTCTACTTGTTTTATCAAAAGGGTTTGTTGTGGGAGATCTAGTTCGAAAGCCATTGGGTAGTAGCAGAAGGAGAAACTCCAATCGGGTACCCGAATGTGGCAATTTCGGGTCAAAATCTGATTGCTCGCAGAACCAAAATTGTCGATGGTGCAGAAGTGTTGTTCTTGATGACGCTTGTTTCTTCAAATCTGAAGCTGCTAGATTACCCTCTCAGATCTTCACTTGTAATCTTCTTAGATTGAGATAAAAGTTACCTTTTTTTCCAATTATGTTGTTTTTTATCCCTTGAATTTTGAGTTTTTGGGTGAAGTTCATTTGAGCTGTGTTATGAGTGAGTACGTTTTCTGTTTTTAGGCTTACCATTATGCTTTTGAAGAAGTAAAAAGATGTGCTTTTGTAAATAATTGTGTTTGAAAAATGAAGAATTGAGTGGTGCTTTCTGATATACTAGAGAGACCAGTTGATTTGCTGT</genome_strand>
        <mrna_strand>TGAGAGGNATCCATGGCTAATATTCCGGAGAANTTNTGCGAATCANCCTTTNTGCTNTTNNNTTGCCGATGAAAATGCACATTAGAACTCTTAGTACCCAACTCTTACTTGTACTGTTTCTTCTACTTGTTTTATCAAAAGGGTTTGTTGTGGGAGATCTAGTTCGAAAGCCATTGGGTAGTAGCAGAAGGAGAAACTCCAATCGGGTACCCGAATGTGGCAATTTCGGGTCAAAATCTGATTGCTCGCAAAACCAAAATTGTCGATGGTGCAAAAGTGTTGTTCTTGATGACGCTTGTTTCTTCAAATCTGAAGCTGCTAGATTACCCTCTCAGATCTTCACTTGTAATCTTCTTAGATTGAGATAAAAGTTACCTTTTTTTCCAATTATGTTGTTTTTTATCCCTTGAATTTTGAGTTTTTGGGTGAAGTTCATTTGAGCTGTGTTATGAGTGAGTACGTTTTCTGTTTTTAGGCTTACCATTATGCTTTTGAAGAAGTAAAAAGATGTGCTTTTGTAAATAATTGTGTTTGAAAAATGAAAAATTGAGTGGTGCTTTCTGATATACTAGAGAGACCAGTTGATTTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562838" ref_strand="+" ref_description="SGN-U562838 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157354687|emb|CAO48005.1| (e_value=6e-78) unnamed; (*ATH) AT4G18910.1 (e_value=3e-69)  Symbol: None | aquaglyceroporin / NOD26-like major intrinsic protein 2 (NLM2), contains Pfam profile: MIP PF00230; similar to SP:P08995 {Glycine max} Nodulin-26 (N-26); identical to cDNA aquaglyceroporin (nlm2 gene) GI:11071655, aquaglyceroporin (Ar... ; (*SWP) sp|Q40746|NIP11_ORYSJ (e_value=7e-75) Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1; ">
      <seq>ctcatctctgtttttgtatttataaattatagaatttctgtttgctcacttcttcctatattcaatttagttcatcacccctgtttctttttttcttgaattatgggtgatcagcaaataggaggaggagctaatggatcaataagtttgaacattagagatgctgatgataatttgaacaataaaaattgtgctaattcagtatcacatcaagattcttcctcaaactcaacttgcagttttgtcacggttcccttcatccaaaagatcatagcagagacgttagggacgtatttcttgatatttgcggggtgtggatcagtggcggtgaatgccgataaaggaatggtgacttttccggggatatcaatagtgtgggggttggtggtgatggtcatggtttactctgttggacacatttctggtgctcattttaaccctgctgttactattgcttttgcatctaacaaaaggttcccttggaaacaggtacctgcctacgtggcagctcaagtgattggatcaacattagcaagtgggaccctacgattaatattcaatgggaaacatgatcacttcgttggaacctcacctactggatcagacgttcaatctcttgttctcgaatttataatcacattttaccttatgtttgtcatttctggtgtcgcaactgataatagagccattggagaacttgctggtcttgctgtcggggcaaccgtattgcttaatgtgatgtttgccgggccaatatcaggggcatcaatgaacccagcaaggagtttgggcccagcaatagtgtcaagccattacaaagtttatgggtttacatgttaggcccaataggtggggccatagctggggcttgggtctacaacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="+" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="76391" stop="80582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76691" g_stop="76957" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76958" i_stop="77075" i_length="118">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77076" g_stop="77297" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="489" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77298" i_stop="78392" i_length="1095">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78393" g_stop="78590" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="687" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78591" i_stop="78848" i_length="258">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78849" g_stop="78910" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="749" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78911" i_stop="80145" i_length="1235">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80146" g_stop="80282" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="885" r_length="136" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="+" ref_id="SGN-U562838" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U562838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76691" e_stop="76957"/>
          <exon e_start="77076" e_stop="77297"/>
          <exon e_start="78393" e_stop="78590"/>
          <exon e_start="78849" e_stop="78910"/>
          <exon e_start="80146" e_stop="80282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCTCTGTTTTTGTATTTATAAATTATAGAATTTCTGTTTGCTCACTTCTTCCTATATTCAATTTAGTTCATCACCCCTGTTTCTTTTTTTCTTGAATTATGGGTGATCAGCAAATAGGAGGAGGAGCTAATGGATCAATAAGTTTGAACATTAGAGATGCTGATGATAATTTGAACAATAAAAATTGTGCTAATTCAGTATCACATCAAGATTCTTCCTCAAACTCAACTTGCAGTTTTGTCACGGTTCCCTTCATCCAAAAGGTGAGTTTTATATATTTAATGAGTTTCTAATACAAAATACAGAGTTCGAATAGAAAAAAAAATAAATTAAACTCAGTGAAACTCGTATCTGATACTCTAACTCCGTATTAATGTGCAGATCATAGCAGAGACGTTAGGGACGTATTTCTTGATATTTGCGGGGTGTGGATCAGTGGCGGTGAATGCCGATAAAGGAATGGTGACTTTTCCGGGGATATCAATAGTGTGGGGGTTGGTGGTGATGGTCATGGTTTACTCTGTTGGACACATTTCTGGTGCTCATTTTAACCCTGCTGTTACTATTGCTTTTGCATCTAACAAAAGGTTCCCTTGGAAACAGGTATTACAACTCTCATACTTTCGCTTACAAATTGATCAATCACTCATGTAAAAATACGATATCTGAGCCTAATTCAATCTTAGAAATTGATTAGGAGTGTTTAAGTTCGTATAACACAATTTGTGTTTCCGCTCTGCAACTAATATGCGACTGTTTTTAACTCATTTGAACTAAGTTCTTTGGTTTTGACATTTTGAGATATATAGATGGTGTAATTATTTAGTTAGTTTTAAGGTAAATAATATATAGGAGATAATGTCAATATACCATGTTTGTATCTACAATATCACAAAGTACAAATATCAAAATGACTCGTCACAAACGAGGGCGGAGTTAAGAGAGGCACGCAGCAGGGGTTCTTCGGTCCTTATTTTATCGAAAAATTATATTATATATCTGAGTTTGTAAAATTAACTATTATTGTTTACACCCTTTGGTTTTAATCCTGTTCTTTTTCCTTGTCACAAACATGTTTGGTATATAAATACTTTCTCTGTCCGATATTATTTGTCATGTTATATTTTTCAAAAGTTAATTTGATTAATTTTCAAAGTTAAATTAGATCACATTAAAAAAAATTATATATTCTAAAACTATATGAAAAATACTATAAATTACAATTTTTTTTGCATATTAATATAACGAAAAAATATATCTTAAAATGTTAATCAAAGTTTTTATAGTTTGATTCTAAAAATTGAAACTATGACAAACAATACAAGAAGGCGGGGATATAAAATTATATTTTAAAATAGAAAATGTAGGTTTGTACGGATTATGAATTTATTTTTCTCATTAATTATAATAATAGCTACACATTGACTCTACTGATTTGTAATTAAGATCATGACTTTTTCTTGTAAATTTTTTCAAACTTTTATTGTTCTTCAAACTAATCCGTTAGTTTTGATTAGTTGAGAACATTAAAGATATTTCAAAGTTTTTTCCTAACCTATATTAATGACCATTACAAAATCTTAGCAAGTTCCGCTAATTAATTATCTAAATTTTTATATAAAAGAATTTTTTATTTTTTTTCATGGCACGGAGTTTTAGAAAAATAAATATTAATAAGTTTTTCTTTCTTGTTCATAGGTACCTGCCTACGTGGCAGCTCAAGTGATTGGATCAACATTAGCAAGTGGGACCCTACGATTAATATTCAATGGGAAACATGATCACTTCGTTGGAACCTCACCTACTGGATCAGACGTTCAATCTCTTGTTCTCGAATTTATAATCACATTTTACCTTATGTTTGTCATTTCTGGTGTCGCAACTGATAATAGAGCCGTAAGTATTATATTTTTTAATTTATTTTTAATTTTTTAATTAGTATATTATTTGAACTTAATTAATTAAAAACTTAAGAACGAGATCTTTAATATATATCGTACGCAAAGGGTAGTCAATTATAATCATGATTAAATTAGTAAGAAGATTGTGACTTTGTTAAATAATATGAATTTATTCAATTATACGTGGACTCTTATGAATCATGATTGATTTGATTTATTTTTTGTTTGTTTGTGAATTATTAATTATTTACAGATTGGAGAACTTGCTGGTCTTGCTGTCGGGGCAACCGTATTGCTTAATGTGATGTTTGCCGGGTAATTAAGTGATTTATTTATTACTCTTTCATTATTTTAAAATGAAAACTATATAATAAAAAAAATTATCTTATTATATAGTGTGAACAAGACTCAAAATATTTGAATAAAGGGTGTTCAAATCTTTTGACCATTGCCTTGTTAGGGTTACGTACATCCTCGTGCACAAAAAATACACGGCTTTTATTTTAGAAAAAAAAAAGATTTCATTTTTTTAATTGACTTAATACATAATTTATTTATTATTTTATTTTATGTTTTTTCTAGAGTTTCACTAATAGCATGTTCGATCAAGTTCTAGGAAAAAAATCATTTTAAAAAAGTATACTTATTTTGTAAAGTTGAGGTGTTTTGTTCAAATTTTTAATAAAGAAATGTAATGTTTTTCAATAGTAGGAAAAAACTATTATTCAGAAGCTGATAAAAATCTTTATTTCTCCGGAACCTTGGTTAAGAGAAAATAGTTGGTATAATATTTACAAAATTGATTTTTTTTTGTCAAATACAAATTGTTTATTCTTTAAAAATATTTTCCATAAAGTATTTTTGATCAAAAAAATAATTGTAATAAATAAATCTATTTTGAAAGTTTGGTCAAACAAATTATAAATATCCTCAGTTATTGAAAATAAACTCTTGGGATTGTTTGGTATGAGAAATATAAGATATTCCCTTTATTCAATAGTAGTTGTCCATTGATATAGGAAATAAGAAATATTAAATAATAGGAGTAGTTTTACCAAATAATGACCTTGATTAAATATAAGTCATCTAAAAATTGAAAAGAAAGAATAGTATTTAATAGCAAGGGTAAAAATATACACAACATGATAGATAAATTATTCGTTGTTTTTATAAACCGGTCAAAATATTGTTGAATATCCCGAAATAATATAGTGGACAACCAAAAACAAAAAGAGGGTGTAATAAACCCCAGAACAAAATTCAGGACTATCTTAGCATTTTGTGAGGGATATTAATTAGTTCCGAGATTATATATCTTACTATTTATACTATAACGATGGAATACATCATACCAATACCATATATATAACAGAATAACTGATCTCATGAAATGTCTCAATCCATGCGAAAAAAACTTTGTCTATCACATCTCCGTACGAAACAACCTCTCCCTAAAATGAACTTACCTATTTGTGATGCTATTTCATATTTGTTCTTAGTTTCTATATTAAAGTGTTATGTAACATAATTTGTTGGGCTGGAGTAAACAGGCCAATATCAGGGGCATCAATGAACCCAGCAAGGAGTTTGGGCCCAGCAATAGTGTCAAGCCATTACAAAGGTTTATGGGTTTACATGTTAGGCCCAATAGGTGGGGCCATAGCTGGTGCTTGGGTCTACAACATCA</genome_strand>
        <mrna_strand>CTCATCTCTGTTTTTGTATTTATAAATTATAGAATTTCTGTTTGCTCACTTCTTCCTATATTCAATTTAGTTCATCACCCCTGTTTCTTTTTTTCTTGAATTATGGGTGATCAGCAAATAGGAGGAGGAGCTAATGGATCAATAAGTTTGAACATTAGAGATGCTGATGATAATTTGAACAATAAAAATTGTGCTAATTCAGTATCACATCAAGATTCTTCCTCAAACTCAACTTGCAGTTTTGTCACGGTTCCCTTCATCCAAAAG......................................................................................................................ATCATAGCAGAGACGTTAGGGACGTATTTCTTGATATTTGCGGGGTGTGGATCAGTGGCGGTGAATGCCGATAAAGGAATGGTGACTTTTCCGGGGATATCAATAGTGTGGGGGTTGGTGGTGATGGTCATGGTTTACTCTGTTGGACACATTTCTGGTGCTCATTTTAACCCTGCTGTTACTATTGCTTTTGCATCTAACAAAAGGTTCCCTTGGAAACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGCCTACGTGGCAGCTCAAGTGATTGGATCAACATTAGCAAGTGGGACCCTACGATTAATATTCAATGGGAAACATGATCACTTCGTTGGAACCTCACCTACTGGATCAGACGTTCAATCTCTTGTTCTCGAATTTATAATCACATTTTACCTTATGTTTGTCATTTCTGGTGTCGCAACTGATAATAGAGCC..................................................................................................................................................................................................................................................................ATTGGAGAACTTGCTGGTCTTGCTGTCGGGGCAACCGTATTGCTTAATGTGATGTTTGCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATATCAGGGGCATCAATGAACCCAGCAAGGAGTTTGGGCCCAGCAATAGTGTCAAGCCATTACAAA-GTTTATGGGTTTACATGTTAGGCCCAATAGGTGGGGCCATAGCTGGGGCTTGGGTCTACAACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597817" ref_strand="+" ref_description="SGN-U597817 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>acaacggagacttatttgatgaggcggcggacgaattccccttcgacgattgcagcgacatattttccgacgccgaaaccggcggatcggaggatgacgtaaaccttaatcaatccgtggaaaatgacaatttaccgttgtcttctctccggcatcggcgacctttttctttcaatgattctggtaacgagtcgactaattttcgacctttcataagttccgagagttattcgaattcgagagagcgaaagataaatttctcaaggaaatttatggcagaagataaggataagaatggaagtttggacaatatagaaagttcgaactcaatgcagcttgacttgagcacaaaaagtcaaaaaggtataggtgatgaacaaaataaggagattccaacaggtatgaatgcaaatagtgtaataatagataattcgaatgaggattcttcactgctgaaagaggattctgtaattactcatgtaaacaatgacgaaaccgataattcggaggaagttaattcacatttcagagaaattgatgattcaagttcgaatattttgtttgatttagcgaatttagtcataaaatctgttggatatcaagtgaatatgttgataacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="86558" stop="85338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86258" g_stop="85638" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-U597817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U597817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86258" e_stop="85638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGGAGACTTATTTGATGATGCGGCGGACGAATTCCCCTTCGACGATTGCAGCGACATATTTTCCGACGCCGAAACCGGCGGATCGGAGGATGACGTAAACCTTAATCAATCCGTGGAAAATGACAATTTACCGTTGTCTTCTCTCCGGCATCGGCGACCTTTTTCTTTCAATGATTCTGGTAACGAGTCGACTAATTTTCGACCTTTCATAAGTTCCGAGAGTTATTCGAATTCGAGAGAGCGAAAGATAAATTTCTCAAGGAAATTTATGGCAGAAGATAAGGATAAGAATGGAAGTTTGGACAATATAGAAAGTTCGAACTCAATGCAGCTTGACTTGAGCACAAAAAGTCAAAAAGGTATAGGTGATGAACAAAATAAGGAGATTCCAACAGGTATGAATGCAAATAGTGTAATAATAGATAATTCGAATGAGGATTCTTCACTGCTGAAAGAGGATTCTGTAATTACTCATGTAAACAATGACGAAACCGATAATTCGGAGGAAGTTAATTCACATTTCAGAGAAATTGATGATTCAAGTTCGAATATTTTGTTTGATTTAGCGAATTTAGTCATAAAATCTGTTGGATATCAAGTGAATATGTTGATAACTA</genome_strand>
        <mrna_strand>ACAACGGAGACTTATTTGATGAGGCGGCGGACGAATTCCCCTTCGACGATTGCAGCGACATATTTTCCGACGCCGAAACCGGCGGATCGGAGGATGACGTAAACCTTAATCAATCCGTGGAAAATGACAATTTACCGTTGTCTTCTCTCCGGCATCGGCGACCTTTTTCTTTCAATGATTCTGGTAACGAGTCGACTAATTTTCGACCTTTCATAAGTTCCGAGAGTTATTCGAATTCGAGAGAGCGAAAGATAAATTTCTCAAGGAAATTTATGGCAGAAGATAAGGATAAGAATGGAAGTTTGGACAATATAGAAAGTTCGAACTCAATGCAGCTTGACTTGAGCACAAAAAGTCAAAAAGGTATAGGTGATGAACAAAATAAGGAGATTCCAACAGGTATGAATGCAAATAGTGTAATAATAGATAATTCGAATGAGGATTCTTCACTGCTGAAAGAGGATTCTGTAATTACTCATGTAAACAATGACGAAACCGATAATTCGGAGGAAGTTAATTCACATTTCAGAGAAATTGATGATTCAAGTTCGAATATTTTGTTTGATTTAGCGAATTTAGTCATAAAATCTGTTGGATATCAAGTGAATATGTTGATAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576467" ref_strand="+" ref_description="SGN-U576467 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|157358077|emb|CAO65122.1| (e_value=0) unnamed; (*ATH) AT5G63890.1 (e_value=0)  Symbol: None | histidinol dehydrogenase, putative / HDH, putative, strong similarity to SP:P24226 Histidinol dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH) {Brassica oleracea var.capitata}; contains Pfam profile PF00815: histidinol dehydro... ; (*SWP) sp|Q9C5U8|HISX_ARATH (e_value=0) Histidinol dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=HDH; ">
      <seq>gcaacctgggtttctacttcccaatagtcaattgaaccaccaccacaaagtacacaactcactctgctgtgacaccgccggcgacgatctgcttaactcttcatctttctccggcgacgacgtataattaacattgatggactgcaacattctatcattgagtaggtcctgtagcttggctagtaatcttcgggcaattcctacacgcaatactgtattttatcggaaatattcttatctacctgcagggttaattcgtaagtcaattaggtgctcaatgaagtcgtataagttatcggagcttacaacctctgaggttgacagcctcaaggctcgtcctcgcattgatttctcctccattttcggcacagttcaacccattgttgacgatgttcgtaatagaggtgatgctgcagttaaagattacacatcgcggtttgacaaagttgtactggataagatagttgaagatgtcagtgagcttccagatcccgagctcgattcatctgttcgcgaagcatttgatgtggcatataacaacatatatgcctttcatgctgctcaaaagcctgttgagaaagttgttgagaacatgcatggggtcagatgtaaacgtgtcgctaggagcattgcctctgtagggctttatgttcctggtggaactgctgttttaccttctacagctctgatgctttcagttccagcacaaattgctggatgtaaaacagttgtacttgcaactccaccttctcgggatggcagcatttgcaaggaagtgctttattgtgccaaaaaagcgggtgtgacccacatccttaaagctggaggtgctcaggcaatttctgcaatggcctggggcactgaatcatgcccaaaggttgagaagatatatgggcctggaaaccagtatgtcactgctgcaaaaatgattctgcagaacagcgaagcgatggtttcaattgacatgcctgctgggccttctgaagtccttgttatagctgacaagcattccagtcctgtccatgtggcagcagatttactttcacaggcggagcatgggccagatagccaagtcgtactggttattgctggggatggtgttgatctaaatgccattcaagaggaaatcatgaagcaatgtcaagcacttccaaggggagaatttgcacttaaggcactaagccacagcttcactgtgttagcacgggatatgctggaggcaatttccttctcaaacatgtatgcacctgagcatctgataatcaatgtggatgaagctgagaagtgggaaaatttaattgagaatgcaggttctgtatttatgggaaagtggacacctgagagtgtaggagattacgcaagtggaactaaccatgttcttccaacttatgggtatgcacggatgtatggtggggtctctttggactctttcttgaagtacatcactgtgcagtctttgacagaagaagggctgaggaatcttggtccttacgtagagaaaatggccgaagttgagggtctggatgcccacaagagggctgtaaccctcagactacaggacatagaagcgagacaagtatcacactcaagatgatccctctatttgtttgcatgaaagaataaatattgagcattgcagctgaggtcgtttatagttttgttgagggggtttgaagctctatattacctgcactctgatttttgtccttccaagtgttgaatcaaacacacttgggaagaaaaaaaacagtaatgtgtaatggttaccatggttgagctagtgcatctgctgtatttgtttgaaataaaatcaaaccagatatctgagaagatgattttatcaaatctaattgtactgagtttgagggttgtattttaattggtctttcaccatgttgtattggagcaaacatgtactaatattttggattgtatcaagaggttgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0096H01-NliIm/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02SLm0096H01.1" temp_strand="-" temp_description="C02SLm0096H01.1  AC226521.1 htgs_phase:3 submitted_to_sgn_as:C02SLm0096H01 sequenced_by:kribb upload_account_name:korea">
        <position start="95956" stop="88749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95657" g_stop="95529" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95528" i_stop="95314" i_length="215">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95313" g_stop="95195" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="248" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94990" g_stop="94869" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="370" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94868" i_stop="94763" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94762" g_stop="94710" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="423" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94709" i_stop="93838" i_length="872">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93837" g_stop="93765" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="496" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93764" i_stop="93662" i_length="103">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93661" g_stop="93560" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="598" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93559" i_stop="93447" i_length="113">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93446" g_stop="93345" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="700" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93344" i_stop="93243" i_length="102">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="93242" g_stop="93171" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="772" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="93170" i_stop="93094" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="93093" g_stop="93031" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="773" r_stop="835" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="93030" i_stop="92894" i_length="137">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="92893" g_stop="92852" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="836" r_stop="877" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="92851" i_stop="91647" i_length="1205">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="91646" g_stop="91587" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="937" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="91586" i_stop="91448" i_length="139">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.801" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="91447" g_stop="91337" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="938" r_stop="1048" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="91336" i_stop="91081" i_length="256">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="91080" g_stop="90910" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1049" r_stop="1219" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="90909" i_stop="90717" i_length="193">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="90716" g_stop="90626" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1220" r_stop="1310" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="90625" i_stop="89701" i_length="925">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="89700" g_stop="89049" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1311" r_stop="1949" r_length="639" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0096H01.1" gen_strand="-" ref_id="SGN-U576467" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1962</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0096H01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U576467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95657" e_stop="95529"/>
          <exon e_start="95313" e_stop="95195"/>
          <exon e_start="94990" e_stop="94869"/>
          <exon e_start="94762" e_stop="94710"/>
          <exon e_start="93837" e_stop="93765"/>
          <exon e_start="93661" e_stop="93560"/>
          <exon e_start="93446" e_stop="93345"/>
          <exon e_start="93242" e_stop="93171"/>
          <exon e_start="93093" e_stop="93031"/>
          <exon e_start="92893" e_stop="92852"/>
          <exon e_start="91646" e_stop="91587"/>
          <exon e_start="91447" e_stop="91337"/>
          <exon e_start="91080" e_stop="90910"/>
          <exon e_start="90716" e_stop="90626"/>
          <exon e_start="89700" e_stop="89049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACCTGGGTTTCTACTTCCCAATAGTCAATTGAACCACCACCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATTGTAGGTTAAGCCCTCTTTCTTCCTCATTAGTGAAAATTTCTAATCCTTTCTCCAAATGCTTTTTTTGTGTGTCTGCTTCATATACCAATCAATTCTCTGATTTTCAAGGATTTTCTAATCGTTTCTCTTATCAGAAAAAAATAATTAAGCTCTAGAAACAACTTTGAATTTTATCATATTTTAGACAGCATAGTCTAATCTTGGTTTGCTGTCAGAACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAGGTATTACTTTCAGAAGTTCCTTCTTTTGCAGAATGTTGTTTGCATTTGTGCATGGCATTTTTCGCAGAACTTTTAATTGGTTGCTTGTAATTGTTCTTATTGGTGAAAACCATTGCAAAGTTCTATGCTTTATATTAAACGTGTCTTCCTAGAGATTTACTGTTGGGGTTAATGTGTCATATTGTTTTTGATGGTTATTAACAGGGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACAGTGAGTTACCAATGCTTCTTGAACTAAATCATTTATCCCCCTTAAACTTACATATTTACAATTCAATTTAGTTGACTTGTTTTGAATGTTGAATGAATTGTATCAGGTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGAGTTAGTGCTTGTTTTATATTTATGACTTACTGTATTTGTTTCATCAACAAATCTTATCCTGTATCTGCTATATCAAAATGCCCATTTCCCCTTTCCCTTTCCATAAGACTGCAGATATGAGTTTATCTTTGATGATTTAAGGAAAAAAACCATGCAGAACAGGTGTTATTGATCCATAGAAAATACCAAAGAAATGCTCCATGTGGAGGTGCTAGACTATCATAGCATATATAAACAATTTGTGTAATATTAATGAATGATGTAAAGGGCATCCCTCCTAACATATTATGTTGTGTGTCCTCATTCTTATTGCACGGACCAAAATGATGGAAATAGTAAGTGGCATAAAGATGAGGTTTATCATGCTCCACATTTCAATCTCTGGTACAGTGTTTTTAAAAATGAAAAGTCCAAAAATATGACAAGGTTCCACATAGAAAATCCAACTGGATGACCTTTGTGTCTTTGCAACTGTTAGCCTAAACATAAAATAAAAAAGATTAATGATTCTATATTGCCGTATCAGACACCCTCCCTTTCTCTCTCTCTCTCTCTCTCCATTTTAAGTTCCCTTTGAGAACACTGGACATTGTGTCAACTTCTTAGTTACACTTTCTTTCATTAATTAAAGCTAATAACAAGTATCTTTGGAGCGTGTTTCTAATGTTTCTGTAATTGATTCTATCTACTTTAGTTGACTTTTCTTTTTAGTTTGATGGACAGAGTAATTCCAAACCTTCAGAATATCCCCTAGTTTAGATCACTTATCATTATTTTGGAGTTAATAGTTCCATGTGAAATTAAATTTTGCCAATATAGTTAGTCTGTCTTGTTGAATTGATGTTACTTTATTTGATATCTGTAATGCTCAGTTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAGGTATGATTGAAGAGAGTATGCTGTTCTCAGAATAATTTTCTTGAAAGACAAATGATTTCAGCTTTTTTAAATTTCGATCTAATTGCTTCTTTATTTGACTCAGCTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCATGTAAGTTTTGTGGATATTATACAGGATTGATCTTAGTTGTGTGGCCTTATATAACAACATTATCTTTATACTTTTATTTTTCCTTTTAACTTCTGTATTTCCTACTTTGTCAGGGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTTGTATGGTGATTCAATTTTTCGTGTTAATTTTCTGCTCTTATTAATCATTCTTTCAATGCTAATTCCCTAAGTACAAAATTATCAATTTTTCCCTTTGGCCAGCCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGCATTTGCAAGGTACTTGCTTACCATCTCACTTTTTTAGTATGACTTAAAAGTATCAGTCACCATTTATTTGGATGCCTTTCTTGTAGGAAGTGCTTTATTGTGCCAAAAAAGCGGGTGTGACCCACATCCTTAAAGCTGGAGGTGCTCAGGTATATGATAATATGCTTCCTTGATCTTGCATTCATCAGCCGATGTTGCGTCTGAATCATTTTCAGTTAGTTTCTTAATTTTTGCAAACACCTTTTACTTACTGGGACACTTACTGTAACTTTCTTAAATCCCACAGGCAATTTCTGCAATGGCCTGGGGCACTGAATCATGCCCAAAGGTACTACTTTCACCTTAAGGAATTGAAACCTGGCATATTGTATCATACAAGCACTAGTATACTTCTATCGTTTTGCTGAGTTTACGCATGAGACACAGAATAATGTAATTAACACGAGTACATTCAGACAATAAATCCTGGCTTGAGTAGACACTAGACACATATTATATTTCTGAAGTGTTCCTTTTCCTTTTTGTATAAAGTAAGAGATTTATCATTGTGTGGACATCAAGAAGATGCCAAATTACAAAGGTATAACCAGTTAGCTTCAGTACAGAAGGGAAGAAACATTTCAGCACTGGTACAAGTAATCTAAGCTAGAACTAAGGAGTGAACAAAGTCCAGAAACATGTCAATCCTATTAACATGTGAAAGAAATTCCAACTAAACAACTTGACTAAACATTGTCTTTAGAGATTGGGTAGGAGTTGATAACTTGATATACCATCAAAGCATGTGTGATTTTTTTGCTAGGTCGATGAACACCATCTGTAAGTCATTGTTATTATTATTAGGATTAGAATCCAGGTGAAGGAGTTTTTCTTAGTTAGATACCGAAAAAGAAAACTACTTTTTTTGTGTTGAGCAAATCTAATTAAGGCTTAATAAATCAAGGATGGGACTAAGAAGGCTAGTTAGTACTATTGGTTTTAGTCAAAAGCACAAGAGAACGAGAATAGAAGAATTTAGGCTGGGGAGGCAAGCAGGTCCAGTCTGATATTACTCAGGAAAGTCTTCTTTTTTTTCTGCAGTGGTTTAGGGGCAGTTTTATCCCATAAAATACAGAAAAAGTTTTTTCGAGTATTTGAGAATATGCCTTTTGTTTTTTCTAAAAAAGTTCTCTGGTACTTGGCTGAAAGTTATATTTTATTAGGGTTACATTCACTTCTCAGGATAGATATCAAGTAAGATGCCCCTATGTACAGTGTATGCTATTGACCCTTATTGGTACATTGACAATATTTCTTACAAAGAAAAGTAATCATGGATTGTACAAGCACATAAACATTGATCTGTTCCTTATACATCTGTAAAGCTTCTACCCTCAATGTCCTTGAATCCTCAATCCTGTGGTTGCCTTGTATACTTTAATGAAGTTGGTTTCCATTCTTATTGTCCTTTGGATCACTTTACAATCGAACTTTCCTCTTCTTTCTTTGATAATATAAAAGGGGAAGCATTATGTACATTGCCATCTATGCCAGGTTGAGAAGATATATGGGCCTGGAAACCAGTATGTCACTGCTGCAAAAATGATTCTGCAGGTATTGGTTTCAAGTAAGAGACAATCTTAGGTTAGGGATATTTGCAGTGTAGATAAATGTCACTCGTAATAAATACGCTGCGAAGACTAATGTCTTCACTTAAAATTGCCTTTTGCTAAGTAATAGTCTCTCTCAACAGAACAGCGAAGCGATGGTTTCAATTGACATGCCTGCTGGGCCTTCTGAAGTCCTTGTTATAGCTGACAAGCATTCCAGTCCTGTCCATGTGGCAGCAGATTTACTTTCACAGGTATCAGCTCCATTTTCACTGCTTGATCAAGTTTCCATTCATACTTTCTGTGTCTGAATCAAGTGCTCTTGTATTTCACATTGGGACAGCTTATGTCTCTTCTGAGATTAAAATAAGAGAAAATTTAAGCTATTCACAGTGAAGAAGATCAACTGTTAATAGATTAAACTGGAACTTCCATCAATTCCTATCTATCATTGTGGCAAAGACTGGGCTACCTCTATTTATTCTTATCACCTCAAATGCATTTTTTCAGGCGGAGCATGGGCCAGATAGCCAAGTCGTACTGGTTATTGCTGGGGATGGTGTTGATCTAAATGCCATTCAAGAGGAAATCATGAAGCAATGTCAAGCACTTCCAAGGGGAGAATTTGCACTTAAGGCACTAAGCCACAGCTTCACTGTGTTAGCACGGGATATGCTGGAGGTATGTTTGTTATTTGTTGATCTTGGTTGGCAGCAATTTGCACAGAGTTGGATGTATACTTGCTGTCATAAAATAATTCTGCCTGAACATAATATAAATAATCAATTACATCATATATGTGAATGCAATATTCCTTATAAATTTCTGTCAGCTACAGCCTTTTCTCTTAGACTTAAATCACAATCTTGTCCAGGCAATTTCCTTCTCAAACATGTATGCACCTGAGCATCTGATAATCAATGTGGATGAAGCTGAGAAGTGGGAAAATTTAATTGAGAATGCAGGTACTTTAGAGGCATGCACTTGCTAAGGTTCTCTTTTTCCATTTGGCATATCCAATCTTCTGTTGGTGTTTTTGGGCTTATTGGGCTGCTGATTGTTTATGCATATCTGAAATATGATCCACAAGCTTCTCTTGGTTTTTTTGCCACGTTAAGGCGAGATATATAGTGGATAATATGTTCATTTTTATTCTTCCTATCTTCCTGAATTTCTTATGTGAGTTTCCGCCCAGCCTTTTGTCATCCTCCTTAGAACAAAACTTCTCCATATGATTTAACAGCCTTCTTTCTTTACTTGAGATTTCTGTTTCATTTTCTTTTTCTCCCCTTGTCTCATCATCCAGCTGGTTAATTTTAGGGGTTTTAGGCTGTATTGAACTGTATGAGATCGATAGTTTTTTCTTCTTTTTATTCCTTGAACTGTATGATTTAGCCCTCAAGATGACAAATAGAAGGTTCATGATGGCTGGCTATTAGCGAGCCGGATAAGAAACTTCACTAGTGATCCTTTGAAGTGCTTGCATTTTTCTTAAATTATTCCGTTTCTCTTTTTTTTAGAAGATATTCATGCACGGGTAGTTGACTAGCCTCTTCTTTTTTCCGCATAGTGGTCAGTCAGCTTGAGTTTCTAGGATAAGCTCTAATATTTTCACTTCGGATGGTGGCTGGAATAAGCTCTAATATTTCGCTTTTGGTATTGACATACCATATTTTTCTCTGGGCTTAAAGAAATCTTGATTTACATTACAGTAGCATAGATGAGGCAAATGATGTCTTCAGTGTTCGTATGTAATACCAGGTAACTGGAAAGTAGGGTTGGAGCCTTGGAGGTTCATATTTTACCATCAATTAGCAACTTACTACTGATCAACCATGCTTCCCTTTGGTTAATCTTAACATATAAATAATCTACTCTGACTACTTGCAGGTTCTGTATTTATGGGAAAGTGGACACCTGAGAGTGTAGGAGATTACGCAAGTGGAACTAACCATGTTCTTCCAACTTATGGGTATGCACGGATGTATGGTGGGGTCTCTTTGGACTCTTTCTTGAAGTACATCACTGTGCAGTCTTTGACAGAAGAAGGGCTGAGGAATCTTGGTCCTTACGTAGAGAAAATGGCCGAAGTTGAGGGTCTGGATGCCCACAAGAGGGCTGTAACCCTCAGACTACAGGACATAGAAGCGAGACAAGTATCACACTCAAGATGATCTCTCTATTTGTTTGCATGAAAGAATAATTATTGAGCATTGCAGCTGAGGTCGTTTATTAGTTTTGTTGAGGGGGTTTGAAGCTCTATATTACCTGCACTCTGATTTTTTTCCTTCCAAGTGTTGAATCAAACACACTTGGGAAG--AAAAAACAGTAATGTGTAATGGTTACCATGGATGAGCTAGTGCATCTGCTGTATTTGTTTGAAATAAAATCAATCCAGATATCTGAGAAGATGATTATATCAAATCTAATTGTACTGAGTTTGAGGGTTGTATTTTAATTGGTCTTTCACCATGTTTTGTAACAAAAGTTGTATTGGAGCAAACATGTACTAATATTTTGGATTGTATCAAGAGGTTGCTTA</genome_strand>
        <mrna_strand>GCAACCTGGGTTTCTACTTCCCAATAGTCAATTGAACCACCACCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATT.......................................................................................................................................................................................................................AACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAG............................................................................................................................................................................................................GGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACA..........................................................................................................GTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAG.......................................................................................................CTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCAT.................................................................................................................GGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTT......................................................................................................CCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGCATTTGCAAG.............................................................................GAAGTGCTTTATTGTGCCAAAAAAGCGGGTGTGACCCACATCCTTAAAGCTGGAGGTGCTCAG.........................................................................................................................................GCAATTTCTGCAATGGCCTGGGGCACTGAATCATGCCCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAAGATATATGGGCCTGGAAACCAGTATGTCACTGCTGCAAAAATGATTCTGCAG...........................................................................................................................................AACAGCGAAGCGATGGTTTCAATTGACATGCCTGCTGGGCCTTCTGAAGTCCTTGTTATAGCTGACAAGCATTCCAGTCCTGTCCATGTGGCAGCAGATTTACTTTCACAG................................................................................................................................................................................................................................................................GCGGAGCATGGGCCAGATAGCCAAGTCGTACTGGTTATTGCTGGGGATGGTGTTGATCTAAATGCCATTCAAGAGGAAATCATGAAGCAATGTCAAGCACTTCCAAGGGGAGAATTTGCACTTAAGGCACTAAGCCACAGCTTCACTGTGTTAGCACGGGATATGCTGGAG.................................................................................................................................................................................................GCAATTTCCTTCTCAAACATGTATGCACCTGAGCATCTGATAATCAATGTGGATGAAGCTGAGAAGTGGGAAAATTTAATTGAGAATGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTATTTATGGGAAAGTGGACACCTGAGAGTGTAGGAGATTACGCAAGTGGAACTAACCATGTTCTTCCAACTTATGGGTATGCACGGATGTATGGTGGGGTCTCTTTGGACTCTTTCTTGAAGTACATCACTGTGCAGTCTTTGACAGAAGAAGGGCTGAGGAATCTTGGTCCTTACGTAGAGAAAATGGCCGAAGTTGAGGGTCTGGATGCCCACAAGAGGGCTGTAACCCTCAGACTACAGGACATAGAAGCGAGACAAGTATCACACTCAAGATGATCCCTCTATTTGTTTGCATGAAAGAATAAATATTGAGCATTGCAGCTGAGGTCGTTTA-TAGTTTTGTTGAGGGGGTTTGAAGCTCTATATTACCTGCACTCTGATTTTTGTCCTTCCAAGTGTTGAATCAAACACACTTGGGAAGAAAAAAAACAGTAATGTGTAATGGTTACCATGGTTGAGCTAGTGCATCTGCTGTATTTGTTTGAAATAAAATCAAACCAGATATCTGAGAAGATGATTTTATCAAATCTAATTGTACTGAGTTTGAGGGTTGTATTTTAATTGGTCTTTCACCA-------T-------GTTGTATTGGAGCAAACATGTACTAATATTTTGGATTGTATCAAGAGGTTGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5633" PGL_stop="6357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5633" e_stop="6357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="5633" e_stop="6357" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5633" stop="6357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598464" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAGAATATACCTATATTTTTCCTTTTTTGGTTCTCTTGTCAATCCATACAAGTTTTTTGTACAAATAATAAATACCCATTTCGTTCTTGGTCTTAAATTCAAACCTTTCTTGATAGTTTTTTATCAGAAAGGTAGAATCTTGGAGTTGTTTTTACAGTTTTTTTTTTGGTATACCCATATAGATATCTCACTGAAATATTGCAAAAATAAGATCAAGAAAGCATTTTTCAGTGGGAAACAAGAAAAGGGCTGGAGTTGATTTTTCAAGATTTTGGTGAAATTGGGTGTGGGAAATTGATGGCATCTGCTGCAATTTTCTCATCGTTGAGAAGACAAAGGTCGCCGACACTGGAAGCGTTCTTGGCGCCGGTGGATCTGACAGATGTTGGGTTGTTGCAAACTTTAACGGCGTTATCTTCTGAGCTGATTTCTGCATATTCAGGTAAAAGGCTGCCGTTTTATCAGCGGAAGAATTGTAAGTCTTTGTTAAGGAAAATTCAAGTATTTTCTGTTCTCTTGGAGTGTCTTCTTGAGAATAAAAAGAACAGAAGTAGTGGTTCTTCAGATTTGCCGTTTACAGCTTTTTTGTGCTTCAAGGAGTTGTATTTATTGCTTTACCGGTCGAAAATCTTGCTTGATTATTGCTCTTATTCAAGTAAGTTGTGGCTGTTGCTACAAAACCATTCGATTTCAGGTCATTTCCATGATTTGAACCAAGAAATC</gDNA_template>
            <first_frame> Y  R  I  Y  L  Y  F  S  F  F  G  S  L  V  N  P  Y  K  F  F  V  Q  I  I  N  T  H  F  V  L  G  L  K  F  K  P  F  L  I  V  F  Y  Q  K  G  R  I  L  E  L  F  L  Q  F  F  F  W  Y  T  H  I  D  I  S  L  K  Y  C  K  N  K  I  K  K  A  F  F  S  G  K  Q  E  K  G  W  S  *  F  F  K  I  L  V  K  L  G  V  G  N  *  W  H  L  L  Q  F  S  H  R  *  E  D  K  G  R  R  H  W  K  R  S  W  R  R  W  I  *  Q  M  L  G  C  C  K  L  *  R  R  Y  L  L  S  *  F  L  H  I  Q  V  K  G  C  R  F  I  S  G  R  I  V  S  L  C  *  G  K  F  K  Y  F  L  F  S  W  S  V  F  L  R  I  K  R  T  E  V  V  V  L  Q  I  C  R  L  Q  L  F  C  A  S  R  S  C  I  Y  C  F  T  G  R  K  S  C  L  I  I  A  L  I  Q  V  S  C  G  C  C  Y  K  T  I  R  F  Q  V  I  S  M  I  *  T  K  K   </first_frame>
            <second_frame>  I  E  Y  T  Y  I  F  P  F  L  V  L  L  S  I  H  T  S  F  L  Y  K  *  *  I  P  I  S  F  L  V  L  N  S  N  L  S  *  *  F  F  I  R  K  V  E  S  W  S  C  F  Y  S  F  F  F  G  I  P  I  *  I  S  H  *  N  I  A  K  I  R  S  R  K  H  F  S  V  G  N  K  K  R  A  G  V  D  F  S  R  F  W  *  N  W  V  W  E  I  D  G  I  C  C  N  F  L  I  V  E  K  T  K  V  A  D  T  G  S  V  L  G  A  G  G  S  D  R  C  W  V  V  A  N  F  N  G  V  I  F  *  A  D  F  C  I  F  R  *  K  A  A  V  L  S  A  E  E  L  *  V  F  V  K  E  N  S  S  I  F  C  S  L  G  V  S  S  *  E  *  K  E  Q  K  *  W  F  F  R  F  A  V  Y  S  F  F  V  L  Q  G  V  V  F  I  A  L  P  V  E  N  L  A  *  L  L  L  L  F  K  *  V  V  A  V  A  T  K  P  F  D  F  R  S  F  P  *  F  E  P  R  N  </second_frame>
            <third_frame>   *  N  I  P  I  F  F  L  F  W  F  S  C  Q  S  I  Q  V  F  C  T  N  N  K  Y  P  F  R  S  W  S  *  I  Q  T  F  L  D  S  F  L  S  E  R  *  N  L  G  V  V  F  T  V  F  F  L  V  Y  P  Y  R  Y  L  T  E  I  L  Q  K  *  D  Q  E  S  I  F  Q  W  E  T  R  K  G  L  E  L  I  F  Q  D  F  G  E  I  G  C  G  K  L  M  A  S  A  A  I  F  S  S  L  R  R  Q  R  S  P  T  L  E  A  F  L  A  P  V  D  L  T  D  V  G  L  L  Q  T  L  T  A  L  S  S  E  L  I  S  A  Y  S  G  K  R  L  P  F  Y  Q  R  K  N  C  K  S  L  L  R  K  I  Q  V  F  S  V  L  L  E  C  L  L  E  N  K  K  N  R  S  S  G  S  S  D  L  P  F  T  A  F  L  C  F  K  E  L  Y  L  L  L  Y  R  S  K  I  L  L  D  Y  C  S  Y  S  S  K  L  W  L  L  L  Q  N  H  S  I  S  G  H  F  H  D  L  N  Q  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5845" stop="6357"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQESIFQWETRKGLELIFQDFGEIGCGKLMASAAIFSSLRRQRSPTLEAFLAPVDLTDVGLLQTLTALSSELISAYSGKRLPFYQRKNCKSLLRKIQVFSVLLECLLENKKNRSSGSSDLPFTAFLCFKELYLLLYRSKILLDYCSYSSKLWLLLQNHSISGHFHDLNQEI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="6491" PGL_stop="8261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6491" e_stop="8261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="6491" e_stop="8261" e_length="1771"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6491" stop="8261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTGAAATTGTTTTCTTTCTTGAATGAGTTTGAGAATGGTGGTGTTCCTGACTATGCTCAGTTGTACTCTTTTTTTGTGGAAAAATTGGGGATTTGTAATCCTAGGAGTTGCAGAGTTGAGATTGAGTTTTTGGAGGAGCAGATTGTGAACCATGAAGGAGATATTGAGCCCACATCCTCAGTTCTCAACGGGTTTGTGGCGTTGATGCGATACTGCAGGTTTTTGCTATTTGGCTTTGAAGAGGATGATATGGGGTTGAGATTGGGTAAGCATAAGAAGCCGAAGAGAGGGCTGATTAGTCAAGAGATTGCAGAGACATTCATTTCTGTACCAAAGGACTTCTGTTGTCCGATATCGTTGGATTTGATGAGGGATCCAGTTATTGTGGCAACAGGGCAGACATATGATCGAGCTTCTATATCGAGGTGGATGGAGGAGGGTCACTGTACTTGCCCAAAGACAGGGCAGTTGCTTGATCATACCCGGCTTGTGCCAAACAGGGCTCTTAGGAATTTGATTATGCATTGGTGTGCTGCTCGCAAAATTCCCTATGACCCTCTGGAGAGTGGGGATCCATGTGTTGAATGTTTTCCATCAGCTTCACCTAGCAGGGCTGCACTAGAAGCTAATAAAGCCACAGCAGCTCTTCTGATTAAGCAGCTAGAGAGTGGGACGCAGATTGCAAAAACTATTGCTGCTCAGGAGATAAGACTTTTAGCTAAAACTGGTAAGGAGAATCGTGCATACATAGCTGAGGCTGGTGCAATCCCACATTTGAAGAATTTGCTTTCATCTCCAGATGCTGTGGCACAAGAAAATTCCGTCACTGCAATGCTTAACTTATCGATTTTTGATAAGAATAAAGGCCGAATTATTGATGAAGTAGGGTGTCTGGCTTTGATAGTTGGAGTTTTGAGATTTGGGCACACCACAGAGGCACGGGAAAATGCTGCAGCAACATTATTCAGTCTGTCAGCTGTTCATGACTATAAGAGGCAAATAGCAAAAGAAGATGGGGCAGTCGAGGCCTTAGCGGGTCTGTTGCGAGAAGGTTCTCCCAGAGGGAAGAAAGATGCAGTAACTGCTCTATTTAATTTATCCACCCACACAGATAATTGTGCGAGGATGATAGAGTCTGGAGCTGTTACTGCTCTAGTTGGAGCTTTGGGAAGTGAAGGTGTTGCTGAAGAAGCTGCTGGTGCATTGGCGCTGATTGTTAGGCAGCAAGTTGGTGCTACAGCTGTTGGCAATGAGGAAATGGCAGTAGCAGGGCTCATTGCAATGATGCGATGTGGGACACCAAGAGGGAAGGAGAATGCTGTTGCTGCATTACTTGAATTATGCCGCGGTGGTGGAGCAGCTGCTACTGAGAGGGTCTTGAAGGCGCCGTCATTAGCAAGTTTACTTCAGACGTTGCTCTTTACAGGAACAAAGCGCGCAAGGAGGAAAGCAGCATCGCTTGCTAGAGTATTCCAACGGTGTGAGCATGCAGCAGTTCATTATAGTGGGTTTGGTGTAGGATATGCATTTGCTGGAAACTCAGCTGCTGCTAGGGATTCAACTTTTCCTGGTGATGTCTCAGTGTCCATGTCCATTTCAGTTCCAGTATTATAGGGGTACTTACCACCATTCATCTTTTGTTCTTAGTTTTACTTGTAATATTCAAAAATTCTTTCATTGAAATATAAACGCGACAAAGAAAGAGAGAAATCATAGGAATACCACAAAATTCATGTGTTCTTAGCATTTTGCAGAATACAGTGTTTCAA</gDNA_template>
            <first_frame> G  *  N  C  F  L  S  *  M  S  L  R  M  V  V  F  L  T  M  L  S  C  T  L  F  L  W  K  N  W  G  F  V  I  L  G  V  A  E  L  R  L  S  F  W  R  S  R  L  *  T  M  K  E  I  L  S  P  H  P  Q  F  S  T  G  L  W  R  *  C  D  T  A  G  F  C  Y  L  A  L  K  R  M  I  W  G  *  D  W  V  S  I  R  S  R  R  E  G  *  L  V  K  R  L  Q  R  H  S  F  L  Y  Q  R  T  S  V  V  R  Y  R  W  I  *  *  G  I  Q  L  L  W  Q  Q  G  R  H  M  I  E  L  L  Y  R  G  G  W  R  R  V  T  V  L  A  Q  R  Q  G  S  C  L  I  I  P  G  L  C  Q  T  G  L  L  G  I  *  L  C  I  G  V  L  L  A  K  F  P  M  T  L  W  R  V  G  I  H  V  L  N  V  F  H  Q  L  H  L  A  G  L  H  *  K  L  I  K  P  Q  Q  L  F  *  L  S  S  *  R  V  G  R  R  L  Q  K  L  L  L  L  R  R  *  D  F  *  L  K  L  V  R  R  I  V  H  T  *  L  R  L  V  Q  S  H  I  *  R  I  C  F  H  L  Q  M  L  W  H  K  K  I  P  S  L  Q  C  L  T  Y  R  F  L  I  R  I  K  A  E  L  L  M  K  *  G  V  W  L  *  *  L  E  F  *  D  L  G  T  P  Q  R  H  G  K  M  L  Q  Q  H  Y  S  V  C  Q  L  F  M  T  I  R  G  K  *  Q  K  K  M  G  Q  S  R  P  *  R  V  C  C  E  K  V  L  P  E  G  R  K  M  Q  *  L  L  Y  L  I  Y  P  P  T  Q  I  I  V  R  G  *  *  S  L  E  L  L  L  L  *  L  E  L  W  E  V  K  V  L  L  K  K  L  L  V  H  W  R  *  L  L  G  S  K  L  V  L  Q  L  L  A  M  R  K  W  Q  *  Q  G  S  L  Q  *  C  D  V  G  H  Q  E  G  R  R  M  L  L  L  H  Y  L  N  Y  A  A  V  V  E  Q  L  L  L  R  G  S  *  R  R  R  H  *  Q  V  Y  F  R  R  C  S  L  Q  E  Q  S  A  Q  G  G  K  Q  H  R  L  L  E  Y  S  N  G  V  S  M  Q  Q  F  I  I  V  G  L  V  *  D  M  H  L  L  E  T  Q  L  L  L  G  I  Q  L  F  L  V  M  S  Q  C  P  C  P  F  Q  F  Q  Y  Y  R  G  T  Y  H  H  S  S  F  V  L  S  F  T  C  N  I  Q  K  F  F  H  *  N  I  N  A  T  K  K  E  R  N  H  R  N  T  T  K  F  M  C  S  *  H  F  A  E  Y  S  V  S  </first_frame>
            <second_frame>  V  E  I  V  F  F  L  E  *  V  *  E  W  W  C  S  *  L  C  S  V  V  L  F  F  C  G  K  I  G  D  L  *  S  *  E  L  Q  S  *  D  *  V  F  G  G  A  D  C  E  P  *  R  R  Y  *  A  H  I  L  S  S  Q  R  V  C  G  V  D  A  I  L  Q  V  F  A  I  W  L  *  R  G  *  Y  G  V  E  I  G  *  A  *  E  A  E  E  R  A  D  *  S  R  D  C  R  D  I  H  F  C  T  K  G  L  L  L  S  D  I  V  G  F  D  E  G  S  S  Y  C  G  N  R  A  D  I  *  S  S  F  Y  I  E  V  D  G  G  G  S  L  Y  L  P  K  D  R  A  V  A  *  S  Y  P  A  C  A  K  Q  G  S  *  E  F  D  Y  A  L  V  C  C  S  Q  N  S  L  *  P  S  G  E  W  G  S  M  C  *  M  F  S  I  S  F  T  *  Q  G  C  T  R  S  *  *  S  H  S  S  S  S  D  *  A  A  R  E  W  D  A  D  C  K  N  Y  C  C  S  G  D  K  T  F  S  *  N  W  *  G  E  S  C  I  H  S  *  G  W  C  N  P  T  F  E  E  F  A  F  I  S  R  C  C  G  T  R  K  F  R  H  C  N  A  *  L  I  D  F  *  *  E  *  R  P  N  Y  *  *  S  R  V  S  G  F  D  S  W  S  F  E  I  W  A  H  H  R  G  T  G  K  C  C  S  N  I  I  Q  S  V  S  C  S  *  L  *  E  A  N  S  K  R  R  W  G  S  R  G  L  S  G  S  V  A  R  R  F  S  Q  R  E  E  R  C  S  N  C  S  I  *  F  I  H  P  H  R  *  L  C  E  D  D  R  V  W  S  C  Y  C  S  S  W  S  F  G  K  *  R  C  C  *  R  S  C  W  C  I  G  A  D  C  *  A  A  S  W  C  Y  S  C  W  Q  *  G  N  G  S  S  R  A  H  C  N  D  A  M  W  D  T  K  R  E  G  E  C  C  C  C  I  T  *  I  M  P  R  W  W  S  S  C  Y  *  E  G  L  E  G  A  V  I  S  K  F  T  S  D  V  A  L  Y  R  N  K  A  R  K  E  E  S  S  I  A  C  *  S  I  P  T  V  *  A  C  S  S  S  L  *  W  V  W  C  R  I  C  I  C  W  K  L  S  C  C  *  G  F  N  F  S  W  *  C  L  S  V  H  V  H  F  S  S  S  I  I  G  V  L  T  T  I  H  L  L  F  L  V  L  L  V  I  F  K  N  S  F  I  E  I  *  T  R  Q  R  K  R  E  I  I  G  I  P  Q  N  S  C  V  L  S  I  L  Q  N  T  V  F  Q </second_frame>
            <third_frame>   L  K  L  F  S  F  L  N  E  F  E  N  G  G  V  P  D  Y  A  Q  L  Y  S  F  F  V  E  K  L  G  I  C  N  P  R  S  C  R  V  E  I  E  F  L  E  E  Q  I  V  N  H  E  G  D  I  E  P  T  S  S  V  L  N  G  F  V  A  L  M  R  Y  C  R  F  L  L  F  G  F  E  E  D  D  M  G  L  R  L  G  K  H  K  K  P  K  R  G  L  I  S  Q  E  I  A  E  T  F  I  S  V  P  K  D  F  C  C  P  I  S  L  D  L  M  R  D  P  V  I  V  A  T  G  Q  T  Y  D  R  A  S  I  S  R  W  M  E  E  G  H  C  T  C  P  K  T  G  Q  L  L  D  H  T  R  L  V  P  N  R  A  L  R  N  L  I  M  H  W  C  A  A  R  K  I  P  Y  D  P  L  E  S  G  D  P  C  V  E  C  F  P  S  A  S  P  S  R  A  A  L  E  A  N  K  A  T  A  A  L  L  I  K  Q  L  E  S  G  T  Q  I  A  K  T  I  A  A  Q  E  I  R  L  L  A  K  T  G  K  E  N  R  A  Y  I  A  E  A  G  A  I  P  H  L  K  N  L  L  S  S  P  D  A  V  A  Q  E  N  S  V  T  A  M  L  N  L  S  I  F  D  K  N  K  G  R  I  I  D  E  V  G  C  L  A  L  I  V  G  V  L  R  F  G  H  T  T  E  A  R  E  N  A  A  A  T  L  F  S  L  S  A  V  H  D  Y  K  R  Q  I  A  K  E  D  G  A  V  E  A  L  A  G  L  L  R  E  G  S  P  R  G  K  K  D  A  V  T  A  L  F  N  L  S  T  H  T  D  N  C  A  R  M  I  E  S  G  A  V  T  A  L  V  G  A  L  G  S  E  G  V  A  E  E  A  A  G  A  L  A  L  I  V  R  Q  Q  V  G  A  T  A  V  G  N  E  E  M  A  V  A  G  L  I  A  M  M  R  C  G  T  P  R  G  K  E  N  A  V  A  A  L  L  E  L  C  R  G  G  G  A  A  A  T  E  R  V  L  K  A  P  S  L  A  S  L  L  Q  T  L  L  F  T  G  T  K  R  A  R  R  K  A  A  S  L  A  R  V  F  Q  R  C  E  H  A  A  V  H  Y  S  G  F  G  V  G  Y  A  F  A  G  N  S  A  A  A  R  D  S  T  F  P  G  D  V  S  V  S  M  S  I  S  V  P  V  L  *  G  Y  L  P  P  F  I  F  C  S  *  F  Y  L  *  Y  S  K  I  L  S  L  K  Y  K  R  D  K  E  R  E  K  S  *  E  Y  H  K  I  H  V  F  L  A  F  C  R  I  Q  C  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6493" stop="8106"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1611</number_coding_nucleotides>
                  <number_encoded_amino_acids>537</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKLFSFLNEFENGGVPDYAQLYSFFVEKLGICNPRSCRVEIEFLEEQIVNHEGDIEPTSSVLNGFVALMRYCRFLLFGFEEDDMGLRLGKHKKPKRGLISQEIAETFISVPKDFCCPISLDLMRDPVIVATGQTYDRASISRWMEEGHCTCPKTGQLLDHTRLVPNRALRNLIMHWCAARKIPYDPLESGDPCVECFPSASPSRAALEANKATAALLIKQLESGTQIAKTIAAQEIRLLAKTGKENRAYIAEAGAIPHLKNLLSSPDAVAQENSVTAMLNLSIFDKNKGRIIDEVGCLALIVGVLRFGHTTEARENAAATLFSLSAVHDYKRQIAKEDGAVEALAGLLREGSPRGKKDAVTALFNLSTHTDNCARMIESGAVTALVGALGSEGVAEEAAGALALIVRQQVGATAVGNEEMAVAGLIAMMRCGTPRGKENAVAALLELCRGGGAAATERVLKAPSLASLLQTLLFTGTKRARRKAASLARVFQRCEHAAVHYSGFGVGYAFAGNSAAARDSTFPGDVSVSMSISVPVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="20336" PGL_stop="19553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20336" e_stop="20066"/>
            <exon e_start="19975" e_stop="19553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.978"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="20336" e_stop="20066" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20065" i_stop="19976" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="19975" e_stop="19553" e_length="423"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20336" stop="20066"/>
              <exon start="19975" stop="19553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTCAATTTAGAATTTCATTTTCTTGGTTCAATTTGCTTTCTCTTTTGCTAATCAATGTGTATGTTTTGGGGGTTTTCTCCTTAAGTCTTGATGGAAATGATGACTACATTTCAGCTGTTGGAGATTCAGGGATGCGACGCGACGGGCTAAGAGTGGCCATAGAGGCATTAAATCAATGCAATGAGGTTGGAGAAGAAACCCCAAAAATGGGAAGCCCAAGGGCTGCTGATTGCTTTGATGTTCAAAACAAAGCCTCTGCTCAGCAACAGA : ATCCAAACAGGCTGCTACAACATAAAGTGACTGAGGAAGATAACAAGTTAGGCATAGGAAAATCATTTCCAGGACTGACGAAACGAGCGTTGAACAACGTAGACCTTTATGCAGCAGAGAAAGAAGTATACTTGGGATCAAAATGTCAAGTTGATGACAAGCCAAATCCATGGCAATTCTGGACGATCAGGCTTAAGAGTGGTAACATGGATACTCGTGCTGGTAAATGCCCGAAAAATGGACACAAAGTAGGTCCATTCGATCCTTCTGGCGAATTTGAATGTTTTGGCAAAGGATGTATGAATCAGCCATTGATGTACCACAATTACACAACTTTACAAGGGACAACCCTTAAAGGGGAATTTCATGGAACATGGGATTTGAATGCTGGTTCGAGTGCAAACATGAACACCTCTTTTTATT</gDNA_template>
            <first_frame> A  Q  F  R  I  S  F  S  W  F  N  L  L  S  L  L  L  I  N  V  Y  V  L  G  V  F  S  L  S  L  D  G  N  D  D  Y  I  S  A  V  G  D  S  G  M  R  R  D  G  L  R  V  A  I  E  A  L  N  Q  C  N  E  V  G  E  E  T  P  K  M  G  S  P  R  A  A  D  C  F  D  V  Q  N  K  A  S  A  Q  Q  Q   : N  P  N  R  L  L  Q  H  K  V  T  E  E  D  N  K  L  G  I  G  K  S  F  P  G  L  T  K  R  A  L  N  N  V  D  L  Y  A  A  E  K  E  V  Y  L  G  S  K  C  Q  V  D  D  K  P  N  P  W  Q  F  W  T  I  R  L  K  S  G  N  M  D  T  R  A  G  K  C  P  K  N  G  H  K  V  G  P  F  D  P  S  G  E  F  E  C  F  G  K  G  C  M  N  Q  P  L  M  Y  H  N  Y  T  T  L  Q  G  T  T  L  K  G  E  F  H  G  T  W  D  L  N  A  G  S  S  A  N  M  N  T  S  F  Y  </first_frame>
            <second_frame>  L  N  L  E  F  H  F  L  G  S  I  C  F  L  F  C  *  S  M  C  M  F  W  G  F  S  P  *  V  L  M  E  M  M  T  T  F  Q  L  L  E  I  Q  G  C  D  A  T  G  *  E  W  P  *  R  H  *  I  N  A  M  R  L  E  K  K  P  Q  K  W  E  A  Q  G  L  L  I  A  L  M  F  K  T  K  P  L  L  S  N  R  :  I  Q  T  G  C  Y  N  I  K  *  L  R  K  I  T  S  *  A  *  E  N  H  F  Q  D  *  R  N  E  R  *  T  T  *  T  F  M  Q  Q  R  K  K  Y  T  W  D  Q  N  V  K  L  M  T  S  Q  I  H  G  N  S  G  R  S  G  L  R  V  V  T  W  I  L  V  L  V  N  A  R  K  M  D  T  K  *  V  H  S  I  L  L  A  N  L  N  V  L  A  K  D  V  *  I  S  H  *  C  T  T  I  T  Q  L  Y  K  G  Q  P  L  K  G  N  F  M  E  H  G  I  *  M  L  V  R  V  Q  T  *  T  P  L  F  I </second_frame>
            <third_frame>   S  I  *  N  F  I  F  L  V  Q  F  A  F  S  F  A  N  Q  C  V  C  F  G  G  F  L  L  K  S  *  W  K  *  *  L  H  F  S  C  W  R  F  R  D  A  T  R  R  A  K  S  G  H  R  G  I  K  S  M  Q  *  G  W  R  R  N  P  K  N  G  K  P  K  G  C  *  L  L  *  C  S  K  Q  S  L  C  S  A  T  E :   S  K  Q  A  A  T  T  *  S  D  *  G  R  *  Q  V  R  H  R  K  I  I  S  R  T  D  E  T  S  V  E  Q  R  R  P  L  C  S  R  E  R  S  I  L  G  I  K  M  S  S  *  *  Q  A  K  S  M  A  I  L  D  D  Q  A  *  E  W  *  H  G  Y  S  C  W  *  M  P  E  K  W  T  Q  S  R  S  I  R  S  F  W  R  I  *  M  F  W  Q  R  M  Y  E  S  A  I  D  V  P  Q  L  H  N  F  T  R  D  N  P  *  R  G  I  S  W  N  M  G  F  E  C  W  F  E  C  K  H  E  H  L  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20336" stop="20066"/>
                    <exon start="19975" stop="19554"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQFRISFSWFNLLSLLLINVYVLGVFSLSLDGNDDYISAVGDSGMRRDGLRVAIEALNQCNEVGEETPKMGSPRAADCFDVQNKASAQQQNPNRLLQHKVTEEDNKLGIGKSFPGLTKRALNNVDLYAAEKEVYLGSKCQVDDKPNPWQFWTIRLKSGNMDTRAGKCPKNGHKVGPFDPSGEFECFGKGCMNQPLMYHNYTTLQGTTLKGEFHGTWDLNAGSSANMNTSFY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="29912" PGL_stop="30329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29912" e_stop="30329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="29912" e_stop="30329" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29912" stop="30329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565090" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTACAGACATTGCTTATTGCTGCTTCTAGGATCTTAGCTGCTTGTTATAGTTTACCACAAACTGTTTGCTTCTGTTACAAAAAAAGCCATTTCTATCAATATAAGCAACAGTTTGGTTTTCATAAAGAAAGACAAACCCCATTCTTCACCAGACTGGATCATCTGTCAGTTGCTACAAGAAGTATTTTGTCCTTGTTACAGTATTATCCTTCACCAGCCAAGAACTCATGAACAACTCCATCAACTTCAATCATACTACAACCAGGCTCTTTAGTTATCCCCTCGCTCCTCATCTTTCTACGCACTTCCCTCACATCATCCCATCTCCCCATAGATGCAAGGGCATTTGATAGTTGAACATAACCAGCACTGTCGCGAGGATCAACCTCTAAAAGTTTGGTAGCGATGCGCTCTG</gDNA_template>
            <first_frame> K  L  Q  T  L  L  I  A  A  S  R  I  L  A  A  C  Y  S  L  P  Q  T  V  C  F  C  Y  K  K  S  H  F  Y  Q  Y  K  Q  Q  F  G  F  H  K  E  R  Q  T  P  F  F  T  R  L  D  H  L  S  V  A  T  R  S  I  L  S  L  L  Q  Y  Y  P  S  P  A  K  N  S  *  T  T  P  S  T  S  I  I  L  Q  P  G  S  L  V  I  P  S  L  L  I  F  L  R  T  S  L  T  S  S  H  L  P  I  D  A  R  A  F  D  S  *  T  *  P  A  L  S  R  G  S  T  S  K  S  L  V  A  M  R  S  </first_frame>
            <second_frame>  N  Y  R  H  C  L  L  L  L  L  G  S  *  L  L  V  I  V  Y  H  K  L  F  A  S  V  T  K  K  A  I  S  I  N  I  S  N  S  L  V  F  I  K  K  D  K  P  H  S  S  P  D  W  I  I  C  Q  L  L  Q  E  V  F  C  P  C  Y  S  I  I  L  H  Q  P  R  T  H  E  Q  L  H  Q  L  Q  S  Y  Y  N  Q  A  L  *  L  S  P  R  S  S  S  F  Y  A  L  P  S  H  H  P  I  S  P  *  M  Q  G  H  L  I  V  E  H  N  Q  H  C  R  E  D  Q  P  L  K  V  W  *  R  C  A  L </second_frame>
            <third_frame>   I  T  D  I  A  Y  C  C  F  *  D  L  S  C  L  L  *  F  T  T  N  C  L  L  L  L  Q  K  K  P  F  L  S  I  *  A  T  V  W  F  S  *  R  K  T  N  P  I  L  H  Q  T  G  S  S  V  S  C  Y  K  K  Y  F  V  L  V  T  V  L  S  F  T  S  Q  E  L  M  N  N  S  I  N  F  N  H  T  T  T  R  L  F  S  Y  P  L  A  P  H  L  S  T  H  F  P  H  I  I  P  S  P  H  R  C  K  G  I  *  *  L  N  I  T  S  T  V  A  R  I  N  L  *  K  F  G  S  D  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29952" stop="30188"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVIVYHKLFASVTKKAISINISNSLVFIKKDKPHSSPDWIICQLLQEVFCPCYSIILHQPRTHEQLHQLQSYYNQAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29912" stop="30145"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLQTLLIAASRILAACYSLPQTVCFCYKKSHFYQYKQQFGFHKERQTPFFTRLDHLSVATRSILSLLQYYPSPAKNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30040" stop="30264"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKTNPILHQTGSSVSCYKKYFVLVTVLSFTSQELMNNSINFNHTTTRLFSYPLAPHLSTHFPHIIPSPHRCKGI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="31788" PGL_stop="31043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31788" e_stop="31043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="31788" e_stop="31043" e_length="746"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31788" stop="31043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGAGTATAACTTATATCAAGCACAACAAATGCGGCTTCTAACAAGTAGTACCAAAACACAATACTCAAATGGCGGCAACTTCCCCAACACCATCAACCCTCTCATCCTTCTTAGAGATGGCGAATTCCATCTCCGAACTCCACCAAGCTCACGCTGTCATGCTCAAAACTGGTCTCTTTCGTGACCCTTTTGCTGCCAGTCGCCTCTTGACTAAAGCCACTGTTCTTCCCTTATCTTCCACTGAAACCCTTTCATATGCACTCTCTGTTTTCACTCACATTGAAGAACCCAACTCATATATCTACAACACTATCATCCGTGCTTATTCCACTAGCCCCTTTCCACAACTAGCACTTATTATCTTCCTCAAAATGTTAAACTCTGTAAATAAAGTTTTCCCAGATAAGTACACTTTAACATTTATTGTAAAAGCTTGTGCTACTATGGAAAATGCTAAACAAGGTGAACAAGTTCATGGGTTGGTGACAAAAATTGGACTTGAGGAAGATGTGTATGTATACAACACTTTGGTTCATATGTATGCGAAATGTGGGTGTTTTGGAGTTTCGCGTGGTATGATTGATGGGTTGATTGAAGATGATGTTATAGCATGGAATGCATTGTTGAGTGTGTATGCAGAAAGGGGGTTGTTTGAATTGGCGCGTGAGTTGTTTGATGAAATGCCTGTGAAAAATGTGGAGTCTTGGAATTTTATGGTTTCTGGGTATGTGAATGTTGGGTTGG</gDNA_template>
            <first_frame> R  E  Y  N  L  Y  Q  A  Q  Q  M  R  L  L  T  S  S  T  K  T  Q  Y  S  N  G  G  N  F  P  N  T  I  N  P  L  I  L  L  R  D  G  E  F  H  L  R  T  P  P  S  S  R  C  H  A  Q  N  W  S  L  S  *  P  F  C  C  Q  S  P  L  D  *  S  H  C  S  S  L  I  F  H  *  N  P  F  I  C  T  L  C  F  H  S  H  *  R  T  Q  L  I  Y  L  Q  H  Y  H  P  C  L  F  H  *  P  L  S  T  T  S  T  Y  Y  L  P  Q  N  V  K  L  C  K  *  S  F  P  R  *  V  H  F  N  I  Y  C  K  S  L  C  Y  Y  G  K  C  *  T  R  *  T  S  S  W  V  G  D  K  N  W  T  *  G  R  C  V  C  I  Q  H  F  G  S  Y  V  C  E  M  W  V  F  W  S  F  A  W  Y  D  *  W  V  D  *  R  *  C  Y  S  M  E  C  I  V  E  C  V  C  R  K  G  V  V  *  I  G  A  *  V  V  *  *  N  A  C  E  K  C  G  V  L  E  F  Y  G  F  W  V  C  E  C  W  V   </first_frame>
            <second_frame>  G  S  I  T  Y  I  K  H  N  K  C  G  F  *  Q  V  V  P  K  H  N  T  Q  M  A  A  T  S  P  T  P  S  T  L  S  S  F  L  E  M  A  N  S  I  S  E  L  H  Q  A  H  A  V  M  L  K  T  G  L  F  R  D  P  F  A  A  S  R  L  L  T  K  A  T  V  L  P  L  S  S  T  E  T  L  S  Y  A  L  S  V  F  T  H  I  E  E  P  N  S  Y  I  Y  N  T  I  I  R  A  Y  S  T  S  P  F  P  Q  L  A  L  I  I  F  L  K  M  L  N  S  V  N  K  V  F  P  D  K  Y  T  L  T  F  I  V  K  A  C  A  T  M  E  N  A  K  Q  G  E  Q  V  H  G  L  V  T  K  I  G  L  E  E  D  V  Y  V  Y  N  T  L  V  H  M  Y  A  K  C  G  C  F  G  V  S  R  G  M  I  D  G  L  I  E  D  D  V  I  A  W  N  A  L  L  S  V  Y  A  E  R  G  L  F  E  L  A  R  E  L  F  D  E  M  P  V  K  N  V  E  S  W  N  F  M  V  S  G  Y  V  N  V  G  L  </second_frame>
            <third_frame>   G  V  *  L  I  S  S  T  T  N  A  A  S  N  K  *  Y  Q  N  T  I  L  K  W  R  Q  L  P  Q  H  H  Q  P  S  H  P  S  *  R  W  R  I  P  S  P  N  S  T  K  L  T  L  S  C  S  K  L  V  S  F  V  T  L  L  L  P  V  A  S  *  L  K  P  L  F  F  P  Y  L  P  L  K  P  F  H  M  H  S  L  F  S  L  T  L  K  N  P  T  H  I  S  T  T  L  S  S  V  L  I  P  L  A  P  F  H  N  *  H  L  L  S  S  S  K  C  *  T  L  *  I  K  F  S  Q  I  S  T  L  *  H  L  L  *  K  L  V  L  L  W  K  M  L  N  K  V  N  K  F  M  G  W  *  Q  K  L  D  L  R  K  M  C  M  Y  T  T  L  W  F  I  C  M  R  N  V  G  V  L  E  F  R  V  V  *  L  M  G  *  L  K  M  M  L  *  H  G  M  H  C  *  V  C  M  Q  K  G  G  C  L  N  W  R  V  S  C  L  M  K  C  L  *  K  M  W  S  L  G  I  L  W  F  L  G  M  *  M  L  G  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31745" stop="31044"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVVPKHNTQMAATSPTPSTLSSFLEMANSISELHQAHAVMLKTGLFRDPFAASRLLTKATVLPLSSTETLSYALSVFTHIEEPNSYIYNTIIRAYSTSPFPQLALIIFLKMLNSVNKVFPDKYTLTFIVKACATMENAKQGEQVHGLVTKIGLEEDVYVYNTLVHMYAKCGCFGVSRGMIDGLIEDDVIAWNALLSVYAERGLFELARELFDEMPVKNVESWNFMVSGYVNVGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="35522" PGL_stop="34083"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35522" e_stop="35372"/>
            <exon e_start="35180" e_stop="34322"/>
            <exon e_start="34225" e_stop="34083"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.578" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.659" acc_prob="0.996" e_score="0.996"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35522" e_stop="35372" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.578" acc_prob="0.995">
            <gDNA_intron_boundary i_start="35371" i_stop="35181" i_length="191"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="35180" e_stop="34322" e_length="859"/>
          </exon>
          <intron i_serial="2" don_prob="0.659" acc_prob="0.996">
            <gDNA_intron_boundary i_start="34321" i_stop="34226" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34225" e_stop="34083" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35522" stop="35372"/>
              <exon start="35180" stop="34637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34750" stop="34322"/>
              <exon start="34225" stop="34083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGCCCTAGAAAAATTGCACAAATTCCGATGTTTTTTTTTAATAATCCTCACGGATCCCAAGAAACATAACTAAATCCTCTAAAGTACCAACCAACTGGTATTTCATTTCAAATTGAGTTTAGCTCTCTGATTGAGTTTAGCTCTCTGAG : GAAAAATTTGATCTTGATTGTGATTCTGGGTTACAAATTGAAAAAAGGGCTGATTTCTTTTTGCATTTTTTGAGCTTTGGAAAATGTTGGGTTTCTACAAATGATTGCGGAAGTGTTAGCTTTGGTTGGTTACAGGGTGGAAAAAGGTGTAGAATTTCTTGAAATTGTGAGGTTATGTTGGGATTGACTTGTCAAGATTGCGGTTGACAATAGGAGTTTTGGGTAATATGTTGGTTTGGGGGTGAATACCTTCTGGAATGTTTGAGAAGATGCTTCCTTTTTTTAAAAAAAAAATAAAATAAAAAATGACACATTTGAAGTTTCTTTTAGTTGACAATAGGAAGAAAGATATTCGGGAATGTTGAATTTGTATCACCTGGAAACTTAGATTTATATATAAGATAAGAATAAGAATCTGTTTTCACATTTGAGCAAGTAGTCTCTAGTGTGGGGTTCTGGAAACAAGCATGTAGTCTGTGATCAGGTGAGATTTGCTTGAATTTGATTGTAACGCAGCGAGATCTAGCTCATTACGATCCTTACGAGGAGTTTTCTGGAGTGTGATGATAAGAAGTTTTGCTCTTAGTAGATGTTCTGTTTCGTTGTTTTAGTTTAGGGGTTGTGATTTTCGTTGAAACCTATCATGGATGAAGCTTCGTGCAGCACGAATGCACTGCCTCCTTTTATTGCAAAGACATATGAAATGGTGGATGATCCATCCTGTGATGCTATTGTCTCCTGGAGTTCGAATAATAAAAGCTTCATTGTGTGGAATCCTCCAGATTTTGCAAGAGATTTGTTGCCTAGATACTTCAAGCACAATAATTTTTCCAGCTTTATCAGACAACTAAACACTTAT : GGATTCAGGAAAATTGACCCTGAAAAATGGGAGTTCGCGAATGAAGGTAATTTCATTAGAGGTCAGCCGAACCTTTTGAAGAATATCCATAGGCGTAAACCTGTTCATAGTCATTCTGCACAGAATCTTCATGGCCTGTCATC</gDNA_template>
            <first_frame> *  A  L  E  K  L  H  K  F  R  C  F  F  L  I  I  L  T  D  P  K  K  H  N  *  I  L  *  S  T  N  Q  L  V  F  H  F  K  L  S  L  A  L  *  L  S  L  A  L  *   : G  K  I  *  S  *  L  *  F  W  V  T  N  *  K  K  G  *  F  L  F  A  F  F  E  L  W  K  M  L  G  F  Y  K  *  L  R  K  C  *  L  W  L  V  T  G  W  K  K  V  *  N  F  L  K  L  *  G  Y  V  G  I  D  L  S  R  L  R  L  T  I  G  V  L  G  N  M  L  V  W  G  *  I  P  S  G  M  F  E  K  M  L  P  F  F  K  K  K  I  K  *  K  M  T  H  L  K  F  L  L  V  D  N  R  K  K  D  I  R  E  C  *  I  C  I  T  W  K  L  R  F  I  Y  K  I  R  I  R  I  C  F  H  I  *  A  S  S  L  *  C  G  V  L  E  T  S  M  *  S  V  I  R  *  D  L  L  E  F  D  C  N  A  A  R  S  S  S  L  R  S  L  R  G  V  F  W  S  V  M  I  R  S  F  A  L  S  R  C  S  V  S  L  F  *  F  R  G  C  D  F  R  *  N  L  S  W  M  K  L  R  A  A  R  M  H  C  L  L  L  L  Q  R  H  M  K  W  W  M  I  H  P  V  M  L  L  S  P  G  V  R  I  I  K  A  S  L  C  G  I  L  Q  I  L  Q  E  I  C  C  L  D  T  S  S  T  I  I  F  P  A  L  S  D  N  *  T  L  M :   D  S  G  K  L  T  L  K  N  G  S  S  R  M  K  V  I  S  L  E  V  S  R  T  F  *  R  I  S  I  G  V  N  L  F  I  V  I  L  H  R  I  F  M  A  C  H  </first_frame>
            <second_frame>  K  P  *  K  N  C  T  N  S  D  V  F  F  *  *  S  S  R  I  P  R  N  I  T  K  S  S  K  V  P  T  N  W  Y  F  I  S  N  *  V  *  L  S  D  *  V  *  L  S  E  :  E  K  F  D  L  D  C  D  S  G  L  Q  I  E  K  R  A  D  F  F  L  H  F  L  S  F  G  K  C  W  V  S  T  N  D  C  G  S  V  S  F  G  W  L  Q  G  G  K  R  C  R  I  S  *  N  C  E  V  M  L  G  L  T  C  Q  D  C  G  *  Q  *  E  F  W  V  I  C  W  F  G  G  E  Y  L  L  E  C  L  R  R  C  F  L  F  L  K  K  K  *  N  K  K  *  H  I  *  S  F  F  *  L  T  I  G  R  K  I  F  G  N  V  E  F  V  S  P  G  N  L  D  L  Y  I  R  *  E  *  E  S  V  F  T  F  E  Q  V  V  S  S  V  G  F  W  K  Q  A  C  S  L  *  S  G  E  I  C  L  N  L  I  V  T  Q  R  D  L  A  H  Y  D  P  Y  E  E  F  S  G  V  *  *  *  E  V  L  L  L  V  D  V  L  F  R  C  F  S  L  G  V  V  I  F  V  E  T  Y  H  G  *  S  F  V  Q  H  E  C  T  A  S  F  Y  C  K  D  I  *  N  G  G  *  S  I  L  *  C  Y  C  L  L  E  F  E  *  *  K  L  H  C  V  E  S  S  R  F  C  K  R  F  V  A  *  I  L  Q  A  Q  *  F  F  Q  L  Y  Q  T  T  K  H  L   : W  I  Q  E  N  *  P  *  K  M  G  V  R  E  *  R  *  F  H  *  R  S  A  E  P  F  E  E  Y  P  *  A  *  T  C  S  *  S  F  C  T  E  S  S  W  P  V  I </second_frame>
            <third_frame>   S  P  R  K  I  A  Q  I  P  M  F  F  F  N  N  P  H  G  S  Q  E  T  *  L  N  P  L  K  Y  Q  P  T  G  I  S  F  Q  I  E  F  S  S  L  I  E  F  S  S  L  R :   K  N  L  I  L  I  V  I  L  G  Y  K  L  K  K  G  L  I  S  F  C  I  F  *  A  L  E  N  V  G  F  L  Q  M  I  A  E  V  L  A  L  V  G  Y  R  V  E  K  G  V  E  F  L  E  I  V  R  L  C  W  D  *  L  V  K  I  A  V  D  N  R  S  F  G  *  Y  V  G  L  G  V  N  T  F  W  N  V  *  E  D  A  S  F  F  *  K  K  N  K  I  K  N  D  T  F  E  V  S  F  S  *  Q  *  E  E  R  Y  S  G  M  L  N  L  Y  H  L  E  T  *  I  Y  I  *  D  K  N  K  N  L  F  S  H  L  S  K  *  S  L  V  W  G  S  G  N  K  H  V  V  C  D  Q  V  R  F  A  *  I  *  L  *  R  S  E  I  *  L  I  T  I  L  T  R  S  F  L  E  C  D  D  K  K  F  C  S  *  *  M  F  C  F  V  V  L  V  *  G  L  *  F  S  L  K  P  I  M  D  E  A  S  C  S  T  N  A  L  P  P  F  I  A  K  T  Y  E  M  V  D  D  P  S  C  D  A  I  V  S  W  S  S  N  N  K  S  F  I  V  W  N  P  P  D  F  A  R  D  L  L  P  R  Y  F  K  H  N  N  F  S  S  F  I  R  Q  L  N  T  Y  :  G  F  R  K  I  D  P  E  K  W  E  F  A  N  E  G  N  F  I  R  G  Q  P  N  L  L  K  N  I  H  R  R  K  P  V  H  S  H  S  A  Q  N  L  H  G  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34555" stop="34322"/>
                    <exon start="34225" stop="34085"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLKPIMDEASCSTNALPPFIAKTYEMVDDPSCDAIVSWSSNNKSFIVWNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFRKIDPEKWEFANEGNFIRGQPNLLKNIHRRKPVHSHSAQNLHGLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="41979" PGL_stop="46609"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41979" e_stop="42313"/>
            <exon e_start="45900" e_stop="46609"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41979" e_stop="42313" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="42314" i_stop="45899" i_length="3586"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="45900" e_stop="46609" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41979" stop="42313"/>
              <exon start="45900" stop="46609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U579427" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCTTATTAGTTTTTTCCTTTCAATTTCCAGGTTTTGCAAGCCCGGTCCAGAAGTAAACCGGTCGAAGAATTTTAATCCGGTTTAAGTCTTCCATTGCGGAGCAATCGACGGCGTTGTAATGACTTCCGGCACGAGGCTACCGACATGGAAGGAGAGAGAGAATAATAAGCGGAGAGAGCGGCGGCGGAGGGCGATCGCCGCTAAGATCTTCGCCGGATTAAGGATGTATGGTAACTATAAGCTACCGAAGCACTGTGATAATAACGAGGTATTGAAAGCTCTGTGTAAAGAGGCTGGTTGGATTGTTGAAGAAGATGGAACTACTTACAGAAAG : GGATGCAAGCCAGTTACACGCATTGATATCGGTGGTTCTGTTTCTGTAAGCAGTTCATCTTACCAACTCAGCCCTGGTGCTTCATATAATCCGAGTCCGGTTTCATCATCTATCCCTAGCCCGGTCTCATCCCATTATGTTGCCAATGTCCAAAATAATTCTGATCCGAACTCTCTTATTCCTTGGCTTAAGAACCTGTCATCTGGCTCATCACCATCCTTGTCTAATTTTCCCCATCATCTGTGCATTCCTGGAGGTTCTATAAGTGCTCCTGTGACTCCACCTTTGAGCTCTCCCACTGCCAGTACTCCCAGGATGAATGATAATTGGGAAAATCCCACGGCCAACTCTACATGGATACAACAGCATTATCCCTTCTTGCCATCCTCAACCCCTCCTAGTCCAGGTCGCCAAACCCCACCGGATTCAGGATGGCTCTCTGGTGTTCAAACTCCACAGGATGGGCCTTCATCTCCCACTTTCAGCCTTGTCTCGTCAAATCCATTTGGATTTAAGGAGCCATTATCAAATGGAGGGTCTCGAATGTGGACACCTGGGCAAAGTGGGACGTGTTCACCTGCAGTTGGACCTTGTATGGACCAAACAGCTGATGTACCAATGTCGGATGCTATCTCAGCAGAGTTTGCATTTGGCAGCAATATGAAAGGTGTAGTCAAGCCATGGGAAGGAGAAAGAATTCATGAAGAGTG</gDNA_template>
            <first_frame> V  L  L  V  F  S  F  Q  F  P  G  F  A  S  P  V  Q  K  *  T  G  R  R  I  L  I  R  F  K  S  S  I  A  E  Q  S  T  A  L  *  *  L  P  A  R  G  Y  R  H  G  R  R  E  R  I  I  S  G  E  S  G  G  G  G  R  S  P  L  R  S  S  P  D  *  G  C  M  V  T  I  S  Y  R  S  T  V  I  I  T  R  Y  *  K  L  C  V  K  R  L  V  G  L  L  K  K  M  E  L  L  T  E  R :   D  A  S  Q  L  H  A  L  I  S  V  V  L  F  L  *  A  V  H  L  T  N  S  A  L  V  L  H  I  I  R  V  R  F  H  H  L  S  L  A  R  S  H  P  I  M  L  P  M  S  K  I  I  L  I  R  T  L  L  F  L  G  L  R  T  C  H  L  A  H  H  H  P  C  L  I  F  P  I  I  C  A  F  L  E  V  L  *  V  L  L  *  L  H  L  *  A  L  P  L  P  V  L  P  G  *  M  I  I  G  K  I  P  R  P  T  L  H  G  Y  N  S  I  I  P  S  C  H  P  Q  P  L  L  V  Q  V  A  K  P  H  R  I  Q  D  G  S  L  V  F  K  L  H  R  M  G  L  H  L  P  L  S  A  L  S  R  Q  I  H  L  D  L  R  S  H  Y  Q  M  E  G  L  E  C  G  H  L  G  K  V  G  R  V  H  L  Q  L  D  L  V  W  T  K  Q  L  M  Y  Q  C  R  M  L  S  Q  Q  S  L  H  L  A  A  I  *  K  V  *  S  S  H  G  K  E  K  E  F  M  K  S  </first_frame>
            <second_frame>  S  Y  *  F  F  P  F  N  F  Q  V  L  Q  A  R  S  R  S  K  P  V  E  E  F  *  S  G  L  S  L  P  L  R  S  N  R  R  R  C  N  D  F  R  H  E  A  T  D  M  E  G  E  R  E  *  *  A  E  R  A  A  A  E  G  D  R  R  *  D  L  R  R  I  K  D  V  W  *  L  *  A  T  E  A  L  *  *  *  R  G  I  E  S  S  V  *  R  G  W  L  D  C  *  R  R  W  N  Y  L  Q  K   : G  M  Q  A  S  Y  T  H  *  Y  R  W  F  C  F  C  K  Q  F  I  L  P  T  Q  P  W  C  F  I  *  S  E  S  G  F  I  I  Y  P  *  P  G  L  I  P  L  C  C  Q  C  P  K  *  F  *  S  E  L  S  Y  S  L  A  *  E  P  V  I  W  L  I  T  I  L  V  *  F  S  P  S  S  V  H  S  W  R  F  Y  K  C  S  C  D  S  T  F  E  L  S  H  C  Q  Y  S  Q  D  E  *  *  L  G  K  S  H  G  Q  L  Y  M  D  T  T  A  L  S  L  L  A  I  L  N  P  S  *  S  R  S  P  N  P  T  G  F  R  M  A  L  W  C  S  N  S  T  G  W  A  F  I  S  H  F  Q  P  C  L  V  K  S  I  W  I  *  G  A  I  I  K  W  R  V  S  N  V  D  T  W  A  K  W  D  V  F  T  C  S  W  T  L  Y  G  P  N  S  *  C  T  N  V  G  C  Y  L  S  R  V  C  I  W  Q  Q  Y  E  R  C  S  Q  A  M  G  R  R  K  N  S  *  R  V </second_frame>
            <third_frame>   L  I  S  F  F  L  S  I  S  R  F  C  K  P  G  P  E  V  N  R  S  K  N  F  N  P  V  *  V  F  H  C  G  A  I  D  G  V  V  M  T  S  G  T  R  L  P  T  W  K  E  R  E  N  N  K  R  R  E  R  R  R  R  A  I  A  A  K  I  F  A  G  L  R  M  Y  G  N  Y  K  L  P  K  H  C  D  N  N  E  V  L  K  A  L  C  K  E  A  G  W  I  V  E  E  D  G  T  T  Y  R  K  :  G  C  K  P  V  T  R  I  D  I  G  G  S  V  S  V  S  S  S  S  Y  Q  L  S  P  G  A  S  Y  N  P  S  P  V  S  S  S  I  P  S  P  V  S  S  H  Y  V  A  N  V  Q  N  N  S  D  P  N  S  L  I  P  W  L  K  N  L  S  S  G  S  S  P  S  L  S  N  F  P  H  H  L  C  I  P  G  G  S  I  S  A  P  V  T  P  P  L  S  S  P  T  A  S  T  P  R  M  N  D  N  W  E  N  P  T  A  N  S  T  W  I  Q  Q  H  Y  P  F  L  P  S  S  T  P  P  S  P  G  R  Q  T  P  P  D  S  G  W  L  S  G  V  Q  T  P  Q  D  G  P  S  S  P  T  F  S  L  V  S  S  N  P  F  G  F  K  E  P  L  S  N  G  G  S  R  M  W  T  P  G  Q  S  G  T  C  S  P  A  V  G  P  C  M  D  Q  T  A  D  V  P  M  S  D  A  I  S  A  E  F  A  F  G  S  N  M  K  G  V  V  K  P  W  E  G  E  R  I  H  E  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42065" stop="42313"/>
                    <exon start="45900" stop="46607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>957</number_coding_nucleotides>
                  <number_encoded_amino_acids>319</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFHCGAIDGVVMTSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCKEAGWIVEEDGTTYRKGCKPVTRIDIGGSVSVSSSSYQLSPGASYNPSPVSSSIPSPVSSHYVANVQNNSDPNSLIPWLKNLSSGSSPSLSNFPHHLCIPGGSISAPVTPPLSSPTASTPRMNDNWENPTANSTWIQQHYPFLPSSTPPSPGRQTPPDSGWLSGVQTPQDGPSSPTFSLVSSNPFGFKEPLSNGGSRMWTPGQSGTCSPAVGPCMDQTADVPMSDAISAEFAFGSNMKGVVKPWEGERIHEE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44409" e_stop="45703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="44409" e_stop="45703" e_length="1295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44409" stop="45703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGAAAGATGTAGGTTCATATGTTGACCCTGTTGCATGTGGAGTATAATGTAGAGGAGAATTGTGATAAAAATAGCAAACTTTGGGTCCCGCATAACTGTTACTATATGAAGCTGAAGACATTGCTTAAAGGGACACCATTATGCTGAGGTTTTGAAAGCGAGTATCTCCTGGGACAAATAATATTTTAACTACGTTCTATAATTTCTTGGTTGCTTCTTTGGACAGCAACCTTACTTTTAATTACCGAGCTACTGTTACATCTACTTGAAACTCTGTGGTTGACCTTAACTGGAAAATTTCTTTAAAATGTGTAAAGAAATAAGGAATTCTGCAATAAATGTGGATGGCTTTTTGGTTCTTGTTCATTATTGTTTCTCTTAGTCACTGTTTTGACTTGGTAGCCACCAAATGTATTAGCCGTGATACAGGTTATCGTAAAAGGTCATTACATTGTGTTGCTAGCTTTTTTGCCAAATTATTAGGTGCAAGAACTATCATGTGGTGGATACCAAACACAAACAGGGCATTGTACTCTGAATCTACTGACATGTTTTTTTTCTTGAAGGGAGAAGTTGGTTGGTCAATGTGGTGGGAAGTTGGTTCCGACAAATATGTGCACCTTTACAGGAACATAGATATAGTCTAAGTTGCTCGGGCTCTTCACTTTTGGTGCCACACCCATGTCCACACGACTAGTGTGTGGGATCCATGTCCGATTGGGTCAACGGATTTTGGTCTTTGACCAAAATTGATGGGGAAAATCTGGACAATTTTAATGATACTAATACAAAAGCTAAGGGAAATTGAAGAAAAATGGAATACCTTGTATATAGAAATTTTTATGTCTACTTTAATCTCCTTCACTATTCTCCTCAAGTTTTTCACATAATATCTCATAATTTAGGTTTTATTTCTCTATTTTAGATATTTTAATTATTTTTAGGCAAATACCCACACCCATATCCGTAAATGGATTCATATCCCCAAATCTTAAGAATTAGATCATGAAAAATCCAACCTCTAGATCTGCAATTGTATCGGACATCCGCACCCGAGTCCAAGCAACTTAGGATGTAGGTACTTCTCATTCCATAACAAAATCTATATGCTCATTTTCAAGAGCGAGAGCTTCTGATTTCGATAGGGATTTTGGTGCTGCTGATAGATGTATGCAGATCAGCGGATATATTACTGAGTAACTGGTGTATCAATGCACTCTTTTGTTGGATCATTGATGTATATCTGGTATAAGTAAAACCAAGTTACACTTCACCTCTAATTTAAGTAGTTGC</gDNA_template>
            <first_frame> L  E  R  C  R  F  I  C  *  P  C  C  M  W  S  I  M  *  R  R  I  V  I  K  I  A  N  F  G  S  R  I  T  V  T  I  *  S  *  R  H  C  L  K  G  H  H  Y  A  E  V  L  K  A  S  I  S  W  D  K  *  Y  F  N  Y  V  L  *  F  L  G  C  F  F  G  Q  Q  P  Y  F  *  L  P  S  Y  C  Y  I  Y  L  K  L  C  G  *  P  *  L  E  N  F  F  K  M  C  K  E  I  R  N  S  A  I  N  V  D  G  F  L  V  L  V  H  Y  C  F  S  *  S  L  F  *  L  G  S  H  Q  M  Y  *  P  *  Y  R  L  S  *  K  V  I  T  L  C  C  *  L  F  C  Q  I  I  R  C  K  N  Y  H  V  V  D  T  K  H  K  Q  G  I  V  L  *  I  Y  *  H  V  F  F  L  E  G  R  S  W  L  V  N  V  V  G  S  W  F  R  Q  I  C  A  P  L  Q  E  H  R  Y  S  L  S  C  S  G  S  S  L  L  V  P  H  P  C  P  H  D  *  C  V  G  S  M  S  D  W  V  N  G  F  W  S  L  T  K  I  D  G  E  N  L  D  N  F  N  D  T  N  T  K  A  K  G  N  *  R  K  M  E  Y  L  V  Y  R  N  F  Y  V  Y  F  N  L  L  H  Y  S  P  Q  V  F  H  I  I  S  H  N  L  G  F  I  S  L  F  *  I  F  *  L  F  L  G  K  Y  P  H  P  Y  P  *  M  D  S  Y  P  Q  I  L  R  I  R  S  *  K  I  Q  P  L  D  L  Q  L  Y  R  T  S  A  P  E  S  K  Q  L  R  M  *  V  L  L  I  P  *  Q  N  L  Y  A  H  F  Q  E  R  E  L  L  I  S  I  G  I  L  V  L  L  I  D  V  C  R  S  A  D  I  L  L  S  N  W  C  I  N  A  L  F  C  W  I  I  D  V  Y  L  V  *  V  K  P  S  Y  T  S  P  L  I  *  V  V   </first_frame>
            <second_frame>  *  K  D  V  G  S  Y  V  D  P  V  A  C  G  V  *  C  R  G  E  L  *  *  K  *  Q  T  L  G  P  A  *  L  L  L  Y  E  A  E  D  I  A  *  R  D  T  I  M  L  R  F  *  K  R  V  S  P  G  T  N  N  I  L  T  T  F  Y  N  F  L  V  A  S  L  D  S  N  L  T  F  N  Y  R  A  T  V  T  S  T  *  N  S  V  V  D  L  N  W  K  I  S  L  K  C  V  K  K  *  G  I  L  Q  *  M  W  M  A  F  W  F  L  F  I  I  V  S  L  S  H  C  F  D  L  V  A  T  K  C  I  S  R  D  T  G  Y  R  K  R  S  L  H  C  V  A  S  F  F  A  K  L  L  G  A  R  T  I  M  W  W  I  P  N  T  N  R  A  L  Y  S  E  S  T  D  M  F  F  F  L  K  G  E  V  G  W  S  M  W  W  E  V  G  S  D  K  Y  V  H  L  Y  R  N  I  D  I  V  *  V  A  R  A  L  H  F  W  C  H  T  H  V  H  T  T  S  V  W  D  P  C  P  I  G  S  T  D  F  G  L  *  P  K  L  M  G  K  I  W  T  I  L  M  I  L  I  Q  K  L  R  E  I  E  E  K  W  N  T  L  Y  I  E  I  F  M  S  T  L  I  S  F  T  I  L  L  K  F  F  T  *  Y  L  I  I  *  V  L  F  L  Y  F  R  Y  F  N  Y  F  *  A  N  T  H  T  H  I  R  K  W  I  H  I  P  K  S  *  E  L  D  H  E  K  S  N  L  *  I  C  N  C  I  G  H  P  H  P  S  P  S  N  L  G  C  R  Y  F  S  F  H  N  K  I  Y  M  L  I  F  K  S  E  S  F  *  F  R  *  G  F  W  C  C  *  *  M  Y  A  D  Q  R  I  Y  Y  *  V  T  G  V  S  M  H  S  F  V  G  S  L  M  Y  I  W  Y  K  *  N  Q  V  T  L  H  L  *  F  K  *  L  </second_frame>
            <third_frame>   R  K  M  *  V  H  M  L  T  L  L  H  V  E  Y  N  V  E  E  N  C  D  K  N  S  K  L  W  V  P  H  N  C  Y  Y  M  K  L  K  T  L  L  K  G  T  P  L  C  *  G  F  E  S  E  Y  L  L  G  Q  I  I  F  *  L  R  S  I  I  S  W  L  L  L  W  T  A  T  L  L  L  I  T  E  L  L  L  H  L  L  E  T  L  W  L  T  L  T  G  K  F  L  *  N  V  *  R  N  K  E  F  C  N  K  C  G  W  L  F  G  S  C  S  L  L  F  L  L  V  T  V  L  T  W  *  P  P  N  V  L  A  V  I  Q  V  I  V  K  G  H  Y  I  V  L  L  A  F  L  P  N  Y  *  V  Q  E  L  S  C  G  G  Y  Q  T  Q  T  G  H  C  T  L  N  L  L  T  C  F  F  S  *  R  E  K  L  V  G  Q  C  G  G  K  L  V  P  T  N  M  C  T  F  T  G  T  *  I  *  S  K  L  L  G  L  F  T  F  G  A  T  P  M  S  T  R  L  V  C  G  I  H  V  R  L  G  Q  R  I  L  V  F  D  Q  N  *  W  G  K  S  G  Q  F  *  *  Y  *  Y  K  S  *  G  K  L  K  K  N  G  I  P  C  I  *  K  F  L  C  L  L  *  S  P  S  L  F  S  S  S  F  S  H  N  I  S  *  F  R  F  Y  F  S  I  L  D  I  L  I  I  F  R  Q  I  P  T  P  I  S  V  N  G  F  I  S  P  N  L  K  N  *  I  M  K  N  P  T  S  R  S  A  I  V  S  D  I  R  T  R  V  Q  A  T  *  D  V  G  T  S  H  S  I  T  K  S  I  C  S  F  S  R  A  R  A  S  D  F  D  R  D  F  G  A  A  D  R  C  M  Q  I  S  G  Y  I  T  E  *  L  V  Y  Q  C  T  L  L  L  D  H  *  C  I  S  G  I  S  K  T  K  L  H  F  T  S  N  L  S  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44749" stop="45057"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MWMAFWFLFIIVSLSHCFDLVATKCISRDTGYRKRSLHCVASFFAKLLGARTIMWWIPNTNRALYSESTDMFFFLKGEVGWSMWWEVGSDKYVHLYRNIDIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="52861" PGL_stop="47482"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52861" e_stop="52597"/>
            <exon e_start="51107" e_stop="49713"/>
            <exon e_start="49371" e_stop="49171"/>
            <exon e_start="48510" e_stop="48315"/>
            <exon e_start="47878" e_stop="47482"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.828" e_score="0.999"/>
          <exon-intron don_prob="0.976" acc_prob="0.993" e_score="0.995"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52861" e_stop="52597" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="52596" i_stop="51108" i_length="1489"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="51107" e_stop="49713" e_length="1395"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.828">
            <gDNA_intron_boundary i_start="49712" i_stop="49372" i_length="341"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="49371" e_stop="49171" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.993">
            <gDNA_intron_boundary i_start="49170" i_stop="48511" i_length="660"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="48510" e_stop="48315" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48314" i_stop="47879" i_length="436"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47878" e_stop="47482" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52861" stop="52597"/>
              <exon start="51107" stop="49713"/>
              <exon start="49371" stop="49171"/>
              <exon start="48510" stop="48315"/>
              <exon start="47878" stop="47482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564493" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCGTCTAATCAATCAAAACTCTATATTCTCTCCTTCAAAGTCTCATCCAATTTCTCAAAAAGATAAAACTGTAGGAGAAAAAAAAAGAAGATTTATATATATATTGATTATGAGGTAATTTAATTTAATTTATTTATTTATCGACCAAAAGATGTTGAAATAATGGAGCCCCATCACAATTCGGATTCCAAGTTTGCTACTCCAGGAGAAGTTGATCCTTCTTCGACTTCTTATTCTAGGGTTTCTAATCCACTTGTTCAATCG : GACTGTAGTAAGTTTGGAGATAACAGAGGCCTGGATGATTTTGATCCAGTCATAGGTTCAAACATTGTAAAAACGGGTAAGCATGAAGAATATAACATAGTAGCTGTACACCTAATGAATGGAACTCCCAAGAACACAAGTTTGATGAGTCGTCTAGATACTCAAGCTGAGGAACTTTTCAGTAAACAGTCATTTCATGACACTGGAGAAGCTAGTGAGAGGTATCATATGGATGGATGGAAAGGGAAATCTGAAGAAGATTCTATAACTCTGAGACAGAACAATATCTTGAGGAGTTCTGAGAAGATTATTAGCAGCAACTGTGATAAAAGTAGAAAATGTGGTTCCGAATCATTTGGTCAAAGTGCAGGTCATGGAAACAAGGATAAGAGTTATATCATGGGCAAGCCAGTGGGTGGACAGCAAGAAACTGATCATGATTCACCTTTGTGCACAAAAGAAAACTATGAGAAGGAGGCACACACAACTAATGGAATGGTTAAAGCTGAAGTCTCTAATGTTAATTTAACTCAACAGACTAACGGAAGTGACATAAAAATAAATCTTCTGTACCCACAATTAGCTGAAAATATAGATTGTGCAACTCAGTCATCTCAAAATGCAGAAGGAAGTATATGCCACCAAAATCAAGAAAAATATTTCTGCTACGATTCGCCACTTTTTGGTGAAACTGGGGCTTGGATACCTGTATCAGTTCCTCCAATGTCGGAGAGTGAGCATGATGAGTGGAGTAGAGGTTTCTGCTCAAATGGTGGGTACCTTCCTGAAGGTGACACAGATTGGAATCAGTGCATGGGAGAAGACAAGGAGTTGACCATGTGGGATGTGGTTCTGGATATGTTGCTCGCAGCACGAGGAAAAGTGCAGTCCCTTGCATCTGGTGATATAGTTGGTAACATGTCGTGGATATCAAGCCATCTCATTGAGCAGGCTTGGAAAGAGATGGCTCAAACCCTCACAGAAGCTAATTTCGGTAATGCCCAGGAAATTCTTGAGGCAGATCCTCCTAAATGGCTGCCTGACAGTGCATCTTCCACTTGTATGTTGTGTAATGTGCGGTTCCACCCTATCATGTGCAGCAGGCATCATTGTCGATTTTGTGGAGGATTATTTTGCAATGAATGTACTAAAGGAAGGAGCTTGCTCCCTGAAAAATTTCGCACTGGGGAACCACAACGAGTATGTGATGTATGTTTTGTACGTCTCGAGTCTGTGCAGCCATACCTAATGGATCAAGTAAGTCGTGCTGCTCAGTTGCCAACCCATGACCTCACTGACTTGAGCACACTGAGATCCTGGGTAAACTTCCCATGGGGACAGTCAATGGAGTATGAAATTTATAAGGCTGCTAACACTATTCGGGGCTATGAGAAG : ATTGGTTTATTGAGTTCTGAGAAGAGAATTCCAGAAGCTATTCTACAAAATGCAAGAGGCCTTGCCATTCTTACGGTCGTGAAAGTTGGAGTGATGGTAACCTACAACATCGGAACTGGATTGGTAATTGCACGTAGAGAAGATGGTTCATGGTCTCCCCCGTCGGCCATTTCTTCTTTCGGTGTAGGATGGGGTGCTCAG : GTTGGTGGAGAACTTACTGACTTCATTATTGTCCTGAGAACTAGTGATGCTGTCAAGACTTTTGGTGGTGATGCACATCTTTCAGTTGGAGCTGGTGTGAGTGCTGCTGCGGGGATCATTGGACGAACTGCTGAAGCTGATCTTCGTGCCGGTACTGCTGGTTATGCCGCTTGTTATACATACAGCTGCAGTAAAG : GTGCCTTTGTTGGGTGTTCCCTGCAAGGGAGTGTTGTGACTACCCGAACACGGGAAAACTCCAGATTTTATGGTAGCCAATCAATAAAAGCTTCAGAAATTCTACTTGGCTCATTGCCAAGACCCCCTGCTGCAGCCGCCCTATATCGTGCACTGACTGATTTATACCAGAAGCTCTGAATATACATCTTTAAGTGTGTTGTACATAACGTTTGGGTTCAAAATTTGGACTTGATTACTGTTATTCTTTGTGAATTATGATTAAATAGATATAGTGATTTGTAGAGTCTGGCTGGCAGAAAGAAAAATTGTAAATATAATCATGATCTTTGCTTGGAGAATATTCAAGCTCAATTAAATCTATTGGCAATTTGGCATTCACTATGGAAAGGGAAAAA</gDNA_template>
            <first_frame> I  V  *  S  I  K  T  L  Y  S  L  L  Q  S  L  I  Q  F  L  K  K  I  K  L  *  E  K  K  K  E  D  L  Y  I  Y  *  L  *  G  N  L  I  *  F  I  Y  L  S  T  K  R  C  *  N  N  G  A  P  S  Q  F  G  F  Q  V  C  Y  S  R  R  S  *  S  F  F  D  F  L  F  *  G  F  *  S  T  C  S  I   : G  L  *  *  V  W  R  *  Q  R  P  G  *  F  *  S  S  H  R  F  K  H  C  K  N  G  *  A  *  R  I  *  H  S  S  C  T  P  N  E  W  N  S  Q  E  H  K  F  D  E  S  S  R  Y  S  S  *  G  T  F  Q  *  T  V  I  S  *  H  W  R  S  *  *  E  V  S  Y  G  W  M  E  R  E  I  *  R  R  F  Y  N  S  E  T  E  Q  Y  L  E  E  F  *  E  D  Y  *  Q  Q  L  *  *  K  *  K  M  W  F  R  I  I  W  S  K  C  R  S  W  K  Q  G  *  E  L  Y  H  G  Q  A  S  G  W  T  A  R  N  *  S  *  F  T  F  V  H  K  R  K  L  *  E  G  G  T  H  N  *  W  N  G  *  S  *  S  L  *  C  *  F  N  S  T  D  *  R  K  *  H  K  N  K  S  S  V  P  T  I  S  *  K  Y  R  L  C  N  S  V  I  S  K  C  R  R  K  Y  M  P  P  K  S  R  K  I  F  L  L  R  F  A  T  F  W  *  N  W  G  L  D  T  C  I  S  S  S  N  V  G  E  *  A  *  *  V  E  *  R  F  L  L  K  W  W  V  P  S  *  R  *  H  R  L  E  S  V  H  G  R  R  Q  G  V  D  H  V  G  C  G  S  G  Y  V  A  R  S  T  R  K  S  A  V  P  C  I  W  *  Y  S  W  *  H  V  V  D  I  K  P  S  H  *  A  G  L  E  R  D  G  S  N  P  H  R  S  *  F  R  *  C  P  G  N  S  *  G  R  S  S  *  M  A  A  *  Q  C  I  F  H  L  Y  V  V  *  C  A  V  P  P  Y  H  V  Q  Q  A  S  L  S  I  L  W  R  I  I  L  Q  *  M  Y  *  R  K  E  L  A  P  *  K  I  S  H  W  G  T  T  T  S  M  *  C  M  F  C  T  S  R  V  C  A  A  I  P  N  G  S  S  K  S  C  C  S  V  A  N  P  *  P  H  *  L  E  H  T  E  I  L  G  K  L  P  M  G  T  V  N  G  V  *  N  L  *  G  C  *  H  Y  S  G  L  *  E   : D  W  F  I  E  F  *  E  E  N  S  R  S  Y  S  T  K  C  K  R  P  C  H  S  Y  G  R  E  S  W  S  D  G  N  L  Q  H  R  N  W  I  G  N  C  T  *  R  R  W  F  M  V  S  P  V  G  H  F  F  F  R  C  R  M  G  C  S   : G  W  W  R  T  Y  *  L  H  Y  C  P  E  N  *  *  C  C  Q  D  F  W  W  *  C  T  S  F  S  W  S  W  C  E  C  C  C  G  D  H  W  T  N  C  *  S  *  S  S  C  R  Y  C  W  L  C  R  L  L  Y  I  Q  L  Q  *  R :   C  L  C  W  V  F  P  A  R  E  C  C  D  Y  P  N  T  G  K  L  Q  I  L  W  *  P  I  N  K  S  F  R  N  S  T  W  L  I  A  K  T  P  C  C  S  R  P  I  S  C  T  D  *  F  I  P  E  A  L  N  I  H  L  *  V  C  C  T  *  R  L  G  S  K  F  G  L  D  Y  C  Y  S  L  *  I  M  I  K  *  I  *  *  F  V  E  S  G  W  Q  K  E  K  L  *  I  *  S  *  S  L  L  G  E  Y  S  S  S  I  K  S  I  G  N  L  A  F  T  M  E  R  E  K </first_frame>
            <second_frame>  S  S  N  Q  S  K  L  Y  I  L  S  F  K  V  S  S  N  F  S  K  R  *  N  C  R  R  K  K  K  K  I  Y  I  Y  I  D  Y  E  V  I  *  F  N  L  F  I  Y  R  P  K  D  V  E  I  M  E  P  H  H  N  S  D  S  K  F  A  T  P  G  E  V  D  P  S  S  T  S  Y  S  R  V  S  N  P  L  V  Q  S  :  D  C  S  K  F  G  D  N  R  G  L  D  D  F  D  P  V  I  G  S  N  I  V  K  T  G  K  H  E  E  Y  N  I  V  A  V  H  L  M  N  G  T  P  K  N  T  S  L  M  S  R  L  D  T  Q  A  E  E  L  F  S  K  Q  S  F  H  D  T  G  E  A  S  E  R  Y  H  M  D  G  W  K  G  K  S  E  E  D  S  I  T  L  R  Q  N  N  I  L  R  S  S  E  K  I  I  S  S  N  C  D  K  S  R  K  C  G  S  E  S  F  G  Q  S  A  G  H  G  N  K  D  K  S  Y  I  M  G  K  P  V  G  G  Q  Q  E  T  D  H  D  S  P  L  C  T  K  E  N  Y  E  K  E  A  H  T  T  N  G  M  V  K  A  E  V  S  N  V  N  L  T  Q  Q  T  N  G  S  D  I  K  I  N  L  L  Y  P  Q  L  A  E  N  I  D  C  A  T  Q  S  S  Q  N  A  E  G  S  I  C  H  Q  N  Q  E  K  Y  F  C  Y  D  S  P  L  F  G  E  T  G  A  W  I  P  V  S  V  P  P  M  S  E  S  E  H  D  E  W  S  R  G  F  C  S  N  G  G  Y  L  P  E  G  D  T  D  W  N  Q  C  M  G  E  D  K  E  L  T  M  W  D  V  V  L  D  M  L  L  A  A  R  G  K  V  Q  S  L  A  S  G  D  I  V  G  N  M  S  W  I  S  S  H  L  I  E  Q  A  W  K  E  M  A  Q  T  L  T  E  A  N  F  G  N  A  Q  E  I  L  E  A  D  P  P  K  W  L  P  D  S  A  S  S  T  C  M  L  C  N  V  R  F  H  P  I  M  C  S  R  H  H  C  R  F  C  G  G  L  F  C  N  E  C  T  K  G  R  S  L  L  P  E  K  F  R  T  G  E  P  Q  R  V  C  D  V  C  F  V  R  L  E  S  V  Q  P  Y  L  M  D  Q  V  S  R  A  A  Q  L  P  T  H  D  L  T  D  L  S  T  L  R  S  W  V  N  F  P  W  G  Q  S  M  E  Y  E  I  Y  K  A  A  N  T  I  R  G  Y  E  K  :  I  G  L  L  S  S  E  K  R  I  P  E  A  I  L  Q  N  A  R  G  L  A  I  L  T  V  V  K  V  G  V  M  V  T  Y  N  I  G  T  G  L  V  I  A  R  R  E  D  G  S  W  S  P  P  S  A  I  S  S  F  G  V  G  W  G  A  Q  :  V  G  G  E  L  T  D  F  I  I  V  L  R  T  S  D  A  V  K  T  F  G  G  D  A  H  L  S  V  G  A  G  V  S  A  A  A  G  I  I  G  R  T  A  E  A  D  L  R  A  G  T  A  G  Y  A  A  C  Y  T  Y  S  C  S  K   : G  A  F  V  G  C  S  L  Q  G  S  V  V  T  T  R  T  R  E  N  S  R  F  Y  G  S  Q  S  I  K  A  S  E  I  L  L  G  S  L  P  R  P  P  A  A  A  A  L  Y  R  A  L  T  D  L  Y  Q  K  L  *  I  Y  I  F  K  C  V  V  H  N  V  W  V  Q  N  L  D  L  I  T  V  I  L  C  E  L  *  L  N  R  Y  S  D  L  *  S  L  A  G  R  K  K  N  C  K  Y  N  H  D  L  C  L  E  N  I  Q  A  Q  L  N  L  L  A  I  W  H  S  L  W  K  G  K   </second_frame>
            <third_frame>   R  L  I  N  Q  N  S  I  F  S  P  S  K  S  H  P  I  S  Q  K  D  K  T  V  G  E  K  K  R  R  F  I  Y  I  L  I  M  R  *  F  N  L  I  Y  L  F  I  D  Q  K  M  L  K  *  W  S  P  I  T  I  R  I  P  S  L  L  L  Q  E  K  L  I  L  L  R  L  L  I  L  G  F  L  I  H  L  F  N  R :   T  V  V  S  L  E  I  T  E  A  W  M  I  L  I  Q  S  *  V  Q  T  L  *  K  R  V  S  M  K  N  I  T  *  *  L  Y  T  *  *  M  E  L  P  R  T  Q  V  *  *  V  V  *  I  L  K  L  R  N  F  S  V  N  S  H  F  M  T  L  E  K  L  V  R  G  I  I  W  M  D  G  K  G  N  L  K  K  I  L  *  L  *  D  R  T  I  S  *  G  V  L  R  R  L  L  A  A  T  V  I  K  V  E  N  V  V  P  N  H  L  V  K  V  Q  V  M  E  T  R  I  R  V  I  S  W  A  S  Q  W  V  D  S  K  K  L  I  M  I  H  L  C  A  Q  K  K  T  M  R  R  R  H  T  Q  L  M  E  W  L  K  L  K  S  L  M  L  I  *  L  N  R  L  T  E  V  T  *  K  *  I  F  C  T  H  N  *  L  K  I  *  I  V  Q  L  S  H  L  K  M  Q  K  E  V  Y  A  T  K  I  K  K  N  I  S  A  T  I  R  H  F  L  V  K  L  G  L  G  Y  L  Y  Q  F  L  Q  C  R  R  V  S  M  M  S  G  V  E  V  S  A  Q  M  V  G  T  F  L  K  V  T  Q  I  G  I  S  A  W  E  K  T  R  S  *  P  C  G  M  W  F  W  I  C  C  S  Q  H  E  E  K  C  S  P  L  H  L  V  I  *  L  V  T  C  R  G  Y  Q  A  I  S  L  S  R  L  G  K  R  W  L  K  P  S  Q  K  L  I  S  V  M  P  R  K  F  L  R  Q  I  L  L  N  G  C  L  T  V  H  L  P  L  V  C  C  V  M  C  G  S  T  L  S  C  A  A  G  I  I  V  D  F  V  E  D  Y  F  A  M  N  V  L  K  E  G  A  C  S  L  K  N  F  A  L  G  N  H  N  E  Y  V  M  Y  V  L  Y  V  S  S  L  C  S  H  T  *  W  I  K  *  V  V  L  L  S  C  Q  P  M  T  S  L  T  *  A  H  *  D  P  G  *  T  S  H  G  D  S  Q  W  S  M  K  F  I  R  L  L  T  L  F  G  A  M  R  R :   L  V  Y  *  V  L  R  R  E  F  Q  K  L  F  Y  K  M  Q  E  A  L  P  F  L  R  S  *  K  L  E  *  W  *  P  T  T  S  E  L  D  W  *  L  H  V  E  K  M  V  H  G  L  P  R  R  P  F  L  L  S  V  *  D  G  V  L  R :   L  V  E  N  L  L  T  S  L  L  S  *  E  L  V  M  L  S  R  L  L  V  V  M  H  I  F  Q  L  E  L  V  *  V  L  L  R  G  S  L  D  E  L  L  K  L  I  F  V  P  V  L  L  V  M  P  L  V  I  H  T  A  A  V  K  :  V  P  L  L  G  V  P  C  K  G  V  L  *  L  P  E  H  G  K  T  P  D  F  M  V  A  N  Q  *  K  L  Q  K  F  Y  L  A  H  C  Q  D  P  L  L  Q  P  P  Y  I  V  H  *  L  I  Y  T  R  S  S  E  Y  T  S  L  S  V  L  Y  I  T  F  G  F  K  I  W  T  *  L  L  L  F  F  V  N  Y  D  *  I  D  I  V  I  C  R  V  W  L  A  E  R  K  I  V  N  I  I  M  I  F  A  W  R  I  F  K  L  N  *  I  Y  W  Q  F  G  I  H  Y  G  K  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52737" stop="52597"/>
                    <exon start="51107" stop="49713"/>
                    <exon start="49371" stop="49171"/>
                    <exon start="48510" stop="48315"/>
                    <exon start="47878" stop="47700"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2109</number_coding_nucleotides>
                  <number_encoded_amino_acids>703</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNLFIYRPKDVEIMEPHHNSDSKFATPGEVDPSSTSYSRVSNPLVQSDCSKFGDNRGLDDFDPVIGSNIVKTGKHEEYNIVAVHLMNGTPKNTSLMSRLDTQAEELFSKQSFHDTGEASERYHMDGWKGKSEEDSITLRQNNILRSSEKIISSNCDKSRKCGSESFGQSAGHGNKDKSYIMGKPVGGQQETDHDSPLCTKENYEKEAHTTNGMVKAEVSNVNLTQQTNGSDIKINLLYPQLAENIDCATQSSQNAEGSICHQNQEKYFCYDSPLFGETGAWIPVSVPPMSESEHDEWSRGFCSNGGYLPEGDTDWNQCMGEDKELTMWDVVLDMLLAARGKVQSLASGDIVGNMSWISSHLIEQAWKEMAQTLTEANFGNAQEILEADPPKWLPDSASSTCMLCNVRFHPIMCSRHHCRFCGGLFCNECTKGRSLLPEKFRTGEPQRVCDVCFVRLESVQPYLMDQVSRAAQLPTHDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYEKIGLLSSEKRIPEAILQNARGLAILTVVKVGVMVTYNIGTGLVIARREDGSWSPPSAISSFGVGWGAQVGGELTDFIIVLRTSDAVKTFGGDAHLSVGAGVSAAAGIIGRTAEADLRAGTAGYAACYTYSCSKGAFVGCSLQGSVVTTRTRENSRFYGSQSIKASEILLGSLPRPPAAAALYRALTDLYQKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="57124" PGL_stop="56358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57124" e_stop="56358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="57124" e_stop="56358" e_length="767"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57124" stop="56358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575541" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTAAGTAACCAAAATATCTCTTATAACACAAGGGAGAAAAAAAAAATTAGATTGAAAAATGGTTAGGCTTTCTGTTACAAAAAATGGTGCAAACCTTGCAACAATATTCATGGTTGGCATGATAGCTGCATCGATCTCGATGATGGCGATCGTTATATTTGCGTGTGCAAAATCCTCCACGAAACGTAAGAATAAGAATAATTCATATAGTCGTGGTGATGGTGGTGATGATAATAAAGCACAAAAAACTCGTGCAAAAGAAGAAATGTTAGTTAGCACTATCGAAATTGCAACAACTATCGTGGATATTCCATCTACTTTTGATGTTTGCGATAATAATAATGATGGTGCGAAAGATACTCGATGTCATGATGGCGATACAATGAAAAATGAAGTTAGTATTGATCGTAACGATAATAATTATGTTAGCGGTGACAATAATAATAATAATATGGGTACAAGTCATACTCATGATGTTAGCACAAATAGTACTAGTGGTGGAGGTGGTGGTCATCATCATGGTGATACAAGTGGGAATACTGGTGGTGGTTGGAGCAATGATCACGGTGGTGCTAGTTGGAGTGGCGGCGATCACGGTGGTGGCGGTTTTAGTGGTGGTGGTGATACTGGTGGTTTTAGTGGTGGAGGTTGGTGATCACGAATTTAGGTGCAATTCTATAAATGTAAAAGTCAATTAAAAATTTTGACATTTGTTTGGTACTACTATAATGTTGTAATTTTCTCAAAATCCATTCATATTTAA</gDNA_template>
            <first_frame> I  I  K  *  P  K  Y  L  L  *  H  K  G  E  K  K  N  *  I  E  K  W  L  G  F  L  L  Q  K  M  V  Q  T  L  Q  Q  Y  S  W  L  A  *  *  L  H  R  S  R  *  W  R  S  L  Y  L  R  V  Q  N  P  P  R  N  V  R  I  R  I  I  H  I  V  V  V  M  V  V  M  I  I  K  H  K  K  L  V  Q  K  K  K  C  *  L  A  L  S  K  L  Q  Q  L  S  W  I  F  H  L  L  L  M  F  A  I  I  I  M  M  V  R  K  I  L  D  V  M  M  A  I  Q  *  K  M  K  L  V  L  I  V  T  I  I  I  M  L  A  V  T  I  I  I  I  I  W  V  Q  V  I  L  M  M  L  A  Q  I  V  L  V  V  E  V  V  V  I  I  M  V  I  Q  V  G  I  L  V  V  V  G  A  M  I  T  V  V  L  V  G  V  A  A  I  T  V  V  A  V  L  V  V  V  V  I  L  V  V  L  V  V  E  V  G  D  H  E  F  R  C  N  S  I  N  V  K  V  N  *  K  F  *  H  L  F  G  T  T  I  M  L  *  F  S  Q  N  P  F  I  F   </first_frame>
            <second_frame>  *  L  S  N  Q  N  I  S  Y  N  T  R  E  K  K  K  I  R  L  K  N  G  *  A  F  C  Y  K  K  W  C  K  P  C  N  N  I  H  G  W  H  D  S  C  I  D  L  D  D  G  D  R  Y  I  C  V  C  K  I  L  H  E  T  *  E  *  E  *  F  I  *  S  W  *  W  W  *  *  *  *  S  T  K  N  S  C  K  R  R  N  V  S  *  H  Y  R  N  C  N  N  Y  R  G  Y  S  I  Y  F  *  C  L  R  *  *  *  *  W  C  E  R  Y  S  M  S  *  W  R  Y  N  E  K  *  S  *  Y  *  S  *  R  *  *  L  C  *  R  *  Q  *  *  *  *  Y  G  Y  K  S  Y  S  *  C  *  H  K  *  Y  *  W  W  R  W  W  S  S  S  W  *  Y  K  W  E  Y  W  W  W  L  E  Q  *  S  R  W  C  *  L  E  W  R  R  S  R  W  W  R  F  *  W  W  W  *  Y  W  W  F  *  W  W  R  L  V  I  T  N  L  G  A  I  L  *  M  *  K  S  I  K  N  F  D  I  C  L  V  L  L  *  C  C  N  F  L  K  I  H  S  Y  L  </second_frame>
            <third_frame>   N  *  V  T  K  I  S  L  I  T  Q  G  R  K  K  K  L  D  *  K  M  V  R  L  S  V  T  K  N  G  A  N  L  A  T  I  F  M  V  G  M  I  A  A  S  I  S  M  M  A  I  V  I  F  A  C  A  K  S  S  T  K  R  K  N  K  N  N  S  Y  S  R  G  D  G  G  D  D  N  K  A  Q  K  T  R  A  K  E  E  M  L  V  S  T  I  E  I  A  T  T  I  V  D  I  P  S  T  F  D  V  C  D  N  N  N  D  G  A  K  D  T  R  C  H  D  G  D  T  M  K  N  E  V  S  I  D  R  N  D  N  N  Y  V  S  G  D  N  N  N  N  N  M  G  T  S  H  T  H  D  V  S  T  N  S  T  S  G  G  G  G  G  H  H  H  G  D  T  S  G  N  T  G  G  G  W  S  N  D  H  G  G  A  S  W  S  G  G  D  H  G  G  G  G  F  S  G  G  G  D  T  G  G  F  S  G  G  G  W  *  S  R  I  *  V  Q  F  Y  K  C  K  S  Q  L  K  I  L  T  F  V  W  Y  Y  Y  N  V  V  I  F  S  K  S  I  H  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57065" stop="56466"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMVRLSVTKNGANLATIFMVGMIAASISMMAIVIFACAKSSTKRKNKNNSYSRGDGGDDNKAQKTRAKEEMLVSTIEIATTIVDIPSTFDVCDNNNDGAKDTRCHDGDTMKNEVSIDRNDNNYVSGDNNNNNMGTSHTHDVSTNSTSGGGGGHHHGDTSGNTGGGWSNDHGGASWSGGDHGGGGFSGGGDTGGFSGGGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="60060" PGL_stop="60589"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60060" e_stop="60589"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="60060" e_stop="60589" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60060" stop="60589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTGTACATAATCTTGTTATAGTAAATATATTAAGTAGATATATATAATATATACAACGATATTAAAATTAAGTTAATTATATGTGCTAAGCTAGAGCACAAAGTACTACTAGAGTACGTACATAACTCACAAGAACAAACATACACAAATATATAACAACTAGAGCAAAGGCCTTTACGAATTGCACACAATTTACCATATCGAAATCCACAAGCACATATAGTGTTTTTTTTTTTTTCGTGGTGTTCAAGCCAGTTTATACACGCCTTGACTAACGTAGGATAAGTGACGGAAGTATTTCCTTAACAAGCATAACACTAGGGCAAGTTTTTCCCCTGCCACCATCAACATTATTATTACCCATTCTTCTTCTACTACCAATTGATCTTGAAGTAGCAGTACTTGTACTGCTACAAGCAATTTCTCCTCCACCAGCAACAACAACACCCGTTGGCGTCGTCGGCCTAGGCTTTTCGAAGCAATTATTAGTAGAACCAAACACGGCCATTGACATCATTGGGATCGACC</gDNA_template>
            <first_frame> M  C  T  *  S  C  Y  S  K  Y  I  K  *  I  Y  I  I  Y  T  T  I  L  K  L  S  *  L  Y  V  L  S  *  S  T  K  Y  Y  *  S  T  Y  I  T  H  K  N  K  H  T  Q  I  Y  N  N  *  S  K  G  L  Y  E  L  H  T  I  Y  H  I  E  I  H  K  H  I  *  C  F  F  F  F  R  G  V  Q  A  S  L  Y  T  P  *  L  T  *  D  K  *  R  K  Y  F  L  N  K  H  N  T  R  A  S  F  S  P  A  T  I  N  I  I  I  T  H  S  S  S  T  T  N  *  S  *  S  S  S  T  C  T  A  T  S  N  F  S  S  T  S  N  N  N  T  R  W  R  R  R  P  R  L  F  E  A  I  I  S  R  T  K  H  G  H  *  H  H  W  D  R   </first_frame>
            <second_frame>  C  V  H  N  L  V  I  V  N  I  L  S  R  Y  I  *  Y  I  Q  R  Y  *  N  *  V  N  Y  M  C  *  A  R  A  Q  S  T  T  R  V  R  T  *  L  T  R  T  N  I  H  K  Y  I  T  T  R  A  K  A  F  T  N  C  T  Q  F  T  I  S  K  S  T  S  T  Y  S  V  F  F  F  F  V  V  F  K  P  V  Y  T  R  L  D  *  R  R  I  S  D  G  S  I  S  L  T  S  I  T  L  G  Q  V  F  P  L  P  P  S  T  L  L  L  P  I  L  L  L  L  P  I  D  L  E  V  A  V  L  V  L  L  Q  A  I  S  P  P  P  A  T  T  T  P  V  G  V  V  G  L  G  F  S  K  Q  L  L  V  E  P  N  T  A  I  D  I  I  G  I  D  </second_frame>
            <third_frame>   V  Y  I  I  L  L  *  *  I  Y  *  V  D  I  Y  N  I  Y  N  D  I  K  I  K  L  I  I  C  A  K  L  E  H  K  V  L  L  E  Y  V  H  N  S  Q  E  Q  T  Y  T  N  I  *  Q  L  E  Q  R  P  L  R  I  A  H  N  L  P  Y  R  N  P  Q  A  H  I  V  F  F  F  F  S  W  C  S  S  Q  F  I  H  A  L  T  N  V  G  *  V  T  E  V  F  P  *  Q  A  *  H  *  G  K  F  F  P  C  H  H  Q  H  Y  Y  Y  P  F  F  F  Y  Y  Q  L  I  L  K  *  Q  Y  L  Y  C  Y  K  Q  F  L  L  H  Q  Q  Q  Q  H  P  L  A  S  S  A  *  A  F  R  S  N  Y  *  *  N  Q  T  R  P  L  T  S  L  G  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60337" stop="60588"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRISDGSISLTSITLGQVFPLPPSTLLLPILLLLPIDLEVAVLVLLQAISPPPATTTPVGVVGLGFSKQLLVEPNTAIDIIGID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="61847" PGL_stop="62439"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61847" e_stop="62439"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="61847" e_stop="62439" e_length="593"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61847" stop="62439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583437" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGAGGAATCCATGGCTAATATTCCGGAGAAATTCTGCGAATCAACCTTTTTGCTCTTCTTTTGCCGATGAAAATGCACATTAGAACTCTTAGTACCCAACTCTTACTTGTACTGTTTCTTCTACTTGTTTTATCAAAAGGGTTTGTTGTGGGAGATCTAGTTCGAAAGCCATTGGGTAGTAGCAGAAGGAGAAACTCCAATCGGGTACCCGAATGTGGCAATTTCGGGTCAAAATCTGATTGCTCGCAGAACCAAAATTGTCGATGGTGCAGAAGTGTTGTTCTTGATGACGCTTGTTTCTTCAAATCTGAAGCTGCTAGATTACCCTCTCAGATCTTCACTTGTAATCTTCTTAGATTGAGATAAAAGTTACCTTTTTTTCCAATTATGTTGTTTTTTATCCCTTGAATTTTGAGTTTTTGGGTGAAGTTCATTTGAGCTGTGTTATGAGTGAGTACGTTTTCTGTTTTTAGGCTTACCATTATGCTTTTGAAGAAGTAAAAAGATGTGCTTTTGTAAATAATTGTGTTTGAAAAATGAAGAATTGAGTGGTGCTTTCTGATATACTAGAGAGACCAGTTGATTTGCTGT</gDNA_template>
            <first_frame> *  E  E  S  M  A  N  I  P  E  K  F  C  E  S  T  F  L  L  F  F  C  R  *  K  C  T  L  E  L  L  V  P  N  S  Y  L  Y  C  F  F  Y  L  F  Y  Q  K  G  L  L  W  E  I  *  F  E  S  H  W  V  V  A  E  G  E  T  P  I  G  Y  P  N  V  A  I  S  G  Q  N  L  I  A  R  R  T  K  I  V  D  G  A  E  V  L  F  L  M  T  L  V  S  S  N  L  K  L  L  D  Y  P  L  R  S  S  L  V  I  F  L  D  *  D  K  S  Y  L  F  F  Q  L  C  C  F  L  S  L  E  F  *  V  F  G  *  S  S  F  E  L  C  Y  E  *  V  R  F  L  F  L  G  L  P  L  C  F  *  R  S  K  K  M  C  F  C  K  *  L  C  L  K  N  E  E  L  S  G  A  F  *  Y  T  R  E  T  S  *  F  A   </first_frame>
            <second_frame>  E  R  N  P  W  L  I  F  R  R  N  S  A  N  Q  P  F  C  S  S  F  A  D  E  N  A  H  *  N  S  *  Y  P  T  L  T  C  T  V  S  S  T  C  F  I  K  R  V  C  C  G  R  S  S  S  K  A  I  G  *  *  Q  K  E  K  L  Q  S  G  T  R  M  W  Q  F  R  V  K  I  *  L  L  A  E  P  K  L  S  M  V  Q  K  C  C  S  *  *  R  L  F  L  Q  I  *  S  C  *  I  T  L  S  D  L  H  L  *  S  S  *  I  E  I  K  V  T  F  F  S  N  Y  V  V  F  Y  P  L  N  F  E  F  L  G  E  V  H  L  S  C  V  M  S  E  Y  V  F  C  F  *  A  Y  H  Y  A  F  E  E  V  K  R  C  A  F  V  N  N  C  V  *  K  M  K  N  *  V  V  L  S  D  I  L  E  R  P  V  D  L  L  </second_frame>
            <third_frame>   R  G  I  H  G  *  Y  S  G  E  I  L  R  I  N  L  F  A  L  L  L  P  M  K  M  H  I  R  T  L  S  T  Q  L  L  L  V  L  F  L  L  L  V  L  S  K  G  F  V  V  G  D  L  V  R  K  P  L  G  S  S  R  R  R  N  S  N  R  V  P  E  C  G  N  F  G  S  K  S  D  C  S  Q  N  Q  N  C  R  W  C  R  S  V  V  L  D  D  A  C  F  F  K  S  E  A  A  R  L  P  S  Q  I  F  T  C  N  L  L  R  L  R  *  K  L  P  F  F  P  I  M  L  F  F  I  P  *  I  L  S  F  W  V  K  F  I  *  A  V  L  *  V  S  T  F  S  V  F  R  L  T  I  M  L  L  K  K  *  K  D  V  L  L  *  I  I  V  F  E  K  *  R  I  E  W  C  F  L  I  Y  *  R  D  Q  L  I  C  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61867" stop="62214"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSGEILRINLFALLLPMKMHIRTLSTQLLLVLFLLLVLSKGFVVGDLVRKPLGSSRRRNSNRVPECGNFGSKSDCSQNQNCRWCRSVVLDDACFFKSEAARLPSQIFTCNLLRLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="76691" PGL_stop="80282"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76691" e_stop="76957"/>
            <exon e_start="77076" e_stop="77297"/>
            <exon e_start="78393" e_stop="78590"/>
            <exon e_start="78849" e_stop="78910"/>
            <exon e_start="80146" e_stop="80282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76691" e_stop="76957" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="76958" i_stop="77075" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77076" e_stop="77297" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="77298" i_stop="78392" i_length="1095"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78393" e_stop="78590" e_length="198"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="78591" i_stop="78848" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78849" e_stop="78910" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78911" i_stop="80145" i_length="1235"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="80146" e_stop="80282" e_length="137"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76691" stop="76957"/>
              <exon start="77076" stop="77297"/>
              <exon start="78393" stop="78590"/>
              <exon start="78849" stop="78910"/>
              <exon start="80146" stop="80282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562838" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCATCTCTGTTTTTGTATTTATAAATTATAGAATTTCTGTTTGCTCACTTCTTCCTATATTCAATTTAGTTCATCACCCCTGTTTCTTTTTTTCTTGAATTATGGGTGATCAGCAAATAGGAGGAGGAGCTAATGGATCAATAAGTTTGAACATTAGAGATGCTGATGATAATTTGAACAATAAAAATTGTGCTAATTCAGTATCACATCAAGATTCTTCCTCAAACTCAACTTGCAGTTTTGTCACGGTTCCCTTCATCCAAAAG : ATCATAGCAGAGACGTTAGGGACGTATTTCTTGATATTTGCGGGGTGTGGATCAGTGGCGGTGAATGCCGATAAAGGAATGGTGACTTTTCCGGGGATATCAATAGTGTGGGGGTTGGTGGTGATGGTCATGGTTTACTCTGTTGGACACATTTCTGGTGCTCATTTTAACCCTGCTGTTACTATTGCTTTTGCATCTAACAAAAGGTTCCCTTGGAAACAG : GTACCTGCCTACGTGGCAGCTCAAGTGATTGGATCAACATTAGCAAGTGGGACCCTACGATTAATATTCAATGGGAAACATGATCACTTCGTTGGAACCTCACCTACTGGATCAGACGTTCAATCTCTTGTTCTCGAATTTATAATCACATTTTACCTTATGTTTGTCATTTCTGGTGTCGCAACTGATAATAGAGCC : ATTGGAGAACTTGCTGGTCTTGCTGTCGGGGCAACCGTATTGCTTAATGTGATGTTTGCCGG : GCCAATATCAGGGGCATCAATGAACCCAGCAAGGAGTTTGGGCCCAGCAATAGTGTCAAGCCATTACAAAGGTTTATGGGTTTACATGTTAGGCCCAATAGGTGGGGCCATAGCTGGTGCTTGGGTCTACAACATCA</gDNA_template>
            <first_frame> L  I  S  V  F  V  F  I  N  Y  R  I  S  V  C  S  L  L  P  I  F  N  L  V  H  H  P  C  F  F  F  S  *  I  M  G  D  Q  Q  I  G  G  G  A  N  G  S  I  S  L  N  I  R  D  A  D  D  N  L  N  N  K  N  C  A  N  S  V  S  H  Q  D  S  S  S  N  S  T  C  S  F  V  T  V  P  F  I  Q  K  :  I  I  A  E  T  L  G  T  Y  F  L  I  F  A  G  C  G  S  V  A  V  N  A  D  K  G  M  V  T  F  P  G  I  S  I  V  W  G  L  V  V  M  V  M  V  Y  S  V  G  H  I  S  G  A  H  F  N  P  A  V  T  I  A  F  A  S  N  K  R  F  P  W  K  Q  :  V  P  A  Y  V  A  A  Q  V  I  G  S  T  L  A  S  G  T  L  R  L  I  F  N  G  K  H  D  H  F  V  G  T  S  P  T  G  S  D  V  Q  S  L  V  L  E  F  I  I  T  F  Y  L  M  F  V  I  S  G  V  A  T  D  N  R  A  :  I  G  E  L  A  G  L  A  V  G  A  T  V  L  L  N  V  M  F  A  G :   P  I  S  G  A  S  M  N  P  A  R  S  L  G  P  A  I  V  S  S  H  Y  K  G  L  W  V  Y  M  L  G  P  I  G  G  A  I  A  G  A  W  V  Y  N  I  </first_frame>
            <second_frame>  S  S  L  F  L  Y  L  *  I  I  E  F  L  F  A  H  F  F  L  Y  S  I  *  F  I  T  P  V  S  F  F  L  E  L  W  V  I  S  K  *  E  E  E  L  M  D  Q  *  V  *  T  L  E  M  L  M  I  I  *  T  I  K  I  V  L  I  Q  Y  H  I  K  I  L  P  Q  T  Q  L  A  V  L  S  R  F  P  S  S  K  R :   S  *  Q  R  R  *  G  R  I  S  *  Y  L  R  G  V  D  Q  W  R  *  M  P  I  K  E  W  *  L  F  R  G  Y  Q  *  C  G  G  W  W  *  W  S  W  F  T  L  L  D  T  F  L  V  L  I  L  T  L  L  L  L  L  L  L  H  L  T  K  G  S  L  G  N  R :   Y  L  P  T  W  Q  L  K  *  L  D  Q  H  *  Q  V  G  P  Y  D  *  Y  S  M  G  N  M  I  T  S  L  E  P  H  L  L  D  Q  T  F  N  L  L  F  S  N  L  *  S  H  F  T  L  C  L  S  F  L  V  S  Q  L  I  I  E  P :   L  E  N  L  L  V  L  L  S  G  Q  P  Y  C  L  M  *  C  L  P   : G  Q  Y  Q  G  H  Q  *  T  Q  Q  G  V  W  A  Q  Q  *  C  Q  A  I  T  K  V  Y  G  F  T  C  *  A  Q  *  V  G  P  *  L  V  L  G  S  T  T  S </second_frame>
            <third_frame>   H  L  C  F  C  I  Y  K  L  *  N  F  C  L  L  T  S  S  Y  I  Q  F  S  S  S  P  L  F  L  F  F  L  N  Y  G  *  S  A  N  R  R  R  S  *  W  I  N  K  F  E  H  *  R  C  *  *  *  F  E  Q  *  K  L  C  *  F  S  I  T  S  R  F  F  L  K  L  N  L  Q  F  C  H  G  S  L  H  P  K   : D  H  S  R  D  V  R  D  V  F  L  D  I  C  G  V  W  I  S  G  G  E  C  R  *  R  N  G  D  F  S  G  D  I  N  S  V  G  V  G  G  D  G  H  G  L  L  C  W  T  H  F  W  C  S  F  *  P  C  C  Y  Y  C  F  C  I  *  Q  K  V  P  L  E  T   : G  T  C  L  R  G  S  S  S  D  W  I  N  I  S  K  W  D  P  T  I  N  I  Q  W  E  T  *  S  L  R  W  N  L  T  Y  W  I  R  R  S  I  S  C  S  R  I  Y  N  H  I  L  P  Y  V  C  H  F  W  C  R  N  *  *  *  S   : H  W  R  T  C  W  S  C  C  R  G  N  R  I  A  *  C  D  V  C  R  :  A  N  I  R  G  I  N  E  P  S  K  E  F  G  P  S  N  S  V  K  P  L  Q  R  F  M  G  L  H  V  R  P  N  R  W  G  H  S  W  C  L  G  L  Q  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76790" stop="76957"/>
                    <exon start="77076" stop="77297"/>
                    <exon start="78393" stop="78590"/>
                    <exon start="78849" stop="78910"/>
                    <exon start="80146" stop="80281"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMGDQQIGGGANGSISLNIRDADDNLNNKNCANSVSHQDSSSNSTCSFVTVPFIQKIIAETLGTYFLIFAGCGSVAVNADKGMVTFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFASNKRFPWKQVPAYVAAQVIGSTLASGTLRLIFNGKHDHFVGTSPTGSDVQSLVLEFIITFYLMFVISGVATDNRAIGELAGLAVGATVLLNVMFAGPISGASMNPARSLGPAIVSSHYKGLWVYMLGPIGGAIAGAWVYNI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="86258" PGL_stop="85638"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86258" e_stop="85638"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="86258" e_stop="85638" e_length="621"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86258" stop="85638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAACGGAGACTTATTTGATGATGCGGCGGACGAATTCCCCTTCGACGATTGCAGCGACATATTTTCCGACGCCGAAACCGGCGGATCGGAGGATGACGTAAACCTTAATCAATCCGTGGAAAATGACAATTTACCGTTGTCTTCTCTCCGGCATCGGCGACCTTTTTCTTTCAATGATTCTGGTAACGAGTCGACTAATTTTCGACCTTTCATAAGTTCCGAGAGTTATTCGAATTCGAGAGAGCGAAAGATAAATTTCTCAAGGAAATTTATGGCAGAAGATAAGGATAAGAATGGAAGTTTGGACAATATAGAAAGTTCGAACTCAATGCAGCTTGACTTGAGCACAAAAAGTCAAAAAGGTATAGGTGATGAACAAAATAAGGAGATTCCAACAGGTATGAATGCAAATAGTGTAATAATAGATAATTCGAATGAGGATTCTTCACTGCTGAAAGAGGATTCTGTAATTACTCATGTAAACAATGACGAAACCGATAATTCGGAGGAAGTTAATTCACATTTCAGAGAAATTGATGATTCAAGTTCGAATATTTTGTTTGATTTAGCGAATTTAGTCATAAAATCTGTTGGATATCAAGTGAATATGTTGATAACTA</gDNA_template>
            <first_frame> T  T  E  T  Y  L  M  M  R  R  T  N  S  P  S  T  I  A  A  T  Y  F  P  T  P  K  P  A  D  R  R  M  T  *  T  L  I  N  P  W  K  M  T  I  Y  R  C  L  L  S  G  I  G  D  L  F  L  S  M  I  L  V  T  S  R  L  I  F  D  L  S  *  V  P  R  V  I  R  I  R  E  S  E  R  *  I  S  Q  G  N  L  W  Q  K  I  R  I  R  M  E  V  W  T  I  *  K  V  R  T  Q  C  S  L  T  *  A  Q  K  V  K  K  V  *  V  M  N  K  I  R  R  F  Q  Q  V  *  M  Q  I  V  *  *  *  I  I  R  M  R  I  L  H  C  *  K  R  I  L  *  L  L  M  *  T  M  T  K  P  I  I  R  R  K  L  I  H  I  S  E  K  L  M  I  Q  V  R  I  F  C  L  I  *  R  I  *  S  *  N  L  L  D  I  K  *  I  C  *  *  L </first_frame>
            <second_frame>  Q  R  R  L  I  *  *  C  G  G  R  I  P  L  R  R  L  Q  R  H  I  F  R  R  R  N  R  R  I  G  G  *  R  K  P  *  S  I  R  G  K  *  Q  F  T  V  V  F  S  P  A  S  A  T  F  F  F  Q  *  F  W  *  R  V  D  *  F  S  T  F  H  K  F  R  E  L  F  E  F  E  R  A  K  D  K  F  L  K  E  I  Y  G  R  R  *  G  *  E  W  K  F  G  Q  Y  R  K  F  E  L  N  A  A  *  L  E  H  K  K  S  K  R  Y  R  *  *  T  K  *  G  D  S  N  R  Y  E  C  K  *  C  N  N  R  *  F  E  *  G  F  F  T  A  E  R  G  F  C  N  Y  S  C  K  Q  *  R  N  R  *  F  G  G  S  *  F  T  F  Q  R  N  *  *  F  K  F  E  Y  F  V  *  F  S  E  F  S  H  K  I  C  W  I  S  S  E  Y  V  D  N   </second_frame>
            <third_frame>   N  G  D  L  F  D  D  A  A  D  E  F  P  F  D  D  C  S  D  I  F  S  D  A  E  T  G  G  S  E  D  D  V  N  L  N  Q  S  V  E  N  D  N  L  P  L  S  S  L  R  H  R  R  P  F  S  F  N  D  S  G  N  E  S  T  N  F  R  P  F  I  S  S  E  S  Y  S  N  S  R  E  R  K  I  N  F  S  R  K  F  M  A  E  D  K  D  K  N  G  S  L  D  N  I  E  S  S  N  S  M  Q  L  D  L  S  T  K  S  Q  K  G  I  G  D  E  Q  N  K  E  I  P  T  G  M  N  A  N  S  V  I  I  D  N  S  N  E  D  S  S  L  L  K  E  D  S  V  I  T  H  V  N  N  D  E  T  D  N  S  E  E  V  N  S  H  F  R  E  I  D  D  S  S  S  N  I  L  F  D  L  A  N  L  V  I  K  S  V  G  Y  Q  V  N  M  L  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86256" stop="85639"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGDLFDDAADEFPFDDCSDIFSDAETGGSEDDVNLNQSVENDNLPLSSLRHRRPFSFNDSGNESTNFRPFISSESYSNSRERKINFSRKFMAEDKDKNGSLDNIESSNSMQLDLSTKSQKGIGDEQNKEIPTGMNANSVIIDNSNEDSSLLKEDSVITHVNNDETDNSEEVNSHFREIDDSSSNILFDLANLVIKSVGYQVNMLIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="95657" PGL_stop="89049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95657" e_stop="95529"/>
            <exon e_start="95313" e_stop="95195"/>
            <exon e_start="94990" e_stop="94869"/>
            <exon e_start="94762" e_stop="94710"/>
            <exon e_start="93837" e_stop="93765"/>
            <exon e_start="93661" e_stop="93560"/>
            <exon e_start="93446" e_stop="93345"/>
            <exon e_start="93242" e_stop="93171"/>
            <exon e_start="93093" e_stop="93031"/>
            <exon e_start="92893" e_stop="92852"/>
            <exon e_start="91646" e_stop="91587"/>
            <exon e_start="91447" e_stop="91337"/>
            <exon e_start="91080" e_stop="90910"/>
            <exon e_start="90716" e_stop="90626"/>
            <exon e_start="89700" e_stop="89049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.712" e_score="0.992"/>
          <exon-intron don_prob="0.932" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.801" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.786" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="95657" e_stop="95529" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.712">
            <gDNA_intron_boundary i_start="95528" i_stop="95314" i_length="215"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95313" e_stop="95195" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.932" acc_prob="0.973">
            <gDNA_intron_boundary i_start="95194" i_stop="94991" i_length="204"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94990" e_stop="94869" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94868" i_stop="94763" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94762" e_stop="94710" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94709" i_stop="93838" i_length="872"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93837" e_stop="93765" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.985">
            <gDNA_intron_boundary i_start="93764" i_stop="93662" i_length="103"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="93661" e_stop="93560" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="93559" i_stop="93447" i_length="113"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93446" e_stop="93345" e_length="102"/>
          </exon>
          <intron i_serial="7" don_prob="0.962" acc_prob="0.965">
            <gDNA_intron_boundary i_start="93344" i_stop="93243" i_length="102"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="93242" e_stop="93171" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="93170" i_stop="93094" i_length="77"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="93093" e_stop="93031" e_length="63"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="93030" i_stop="92894" i_length="137"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="92893" e_stop="92852" e_length="42"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="92851" i_stop="91647" i_length="1205"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="91646" e_stop="91587" e_length="60"/>
          </exon>
          <intron i_serial="11" don_prob="0.907" acc_prob="0.801">
            <gDNA_intron_boundary i_start="91586" i_stop="91448" i_length="139"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="91447" e_stop="91337" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="91336" i_stop="91081" i_length="256"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="91080" e_stop="90910" e_length="171"/>
          </exon>
          <intron i_serial="13" don_prob="0.968" acc_prob="0.895">
            <gDNA_intron_boundary i_start="90909" i_stop="90717" i_length="193"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="90716" e_stop="90626" e_length="91"/>
          </exon>
          <intron i_serial="14" don_prob="0.786" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90625" i_stop="89701" i_length="925"/>
          </intron>
          <exon e_serial="15" e_score="0.962">
            <gDNA_exon_boundary e_start="89700" e_stop="89049" e_length="652"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95657" stop="95529"/>
              <exon start="95313" stop="95195"/>
              <exon start="94990" stop="94869"/>
              <exon start="94762" stop="94710"/>
              <exon start="93837" stop="93765"/>
              <exon start="93661" stop="93560"/>
              <exon start="93446" stop="93345"/>
              <exon start="93242" stop="93171"/>
              <exon start="93093" stop="93031"/>
              <exon start="92893" stop="92852"/>
              <exon start="91646" stop="91587"/>
              <exon start="91447" stop="91337"/>
              <exon start="91080" stop="90910"/>
              <exon start="90716" stop="90626"/>
              <exon start="89700" stop="89049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACCTGGGTTTCTACTTCCCAATAGTCAATTGAACCACCACCACAAAGTACACAACTCACTCTGCTGTGACACCGCCGGCGACGATCTGCTTAACTCTTCATCTTTCTCCGGCGACGACGTATAATT : AACATTGATGGACTGCAACATTCTATCATTGAGTAGGTCCTGTAGCTTGGCTAGTAATCTTCGGGCAATTCCTACACGCAATACTGTATTTTATCGGAAATATTCTTATCTACCTGCAG : GGTTAATTCGTAAGTCAATTAGGTGCTCAATGAAGTCGTATAAGTTATCGGAGCTTACAACCTCTGAGGTTGACAGCCTCAAGGCTCGTCCTCGCATTGATTTCTCCTCCATTTTCGGCACA : GTTCAACCCATTGTTGACGATGTTCGTAATAGAGGTGATGCTGCAGTTAAAGA : TTACACATCGCGGTTTGACAAAGTTGTACTGGATAAGATAGTTGAAGATGTCAGTGAGCTTCCAGATCCCGAG : CTCGATTCATCTGTTCGCGAAGCATTTGATGTGGCATATAACAACATATATGCCTTTCATGCTGCTCAAAAGCCTGTTGAGAAAGTTGTTGAGAACATGCAT : GGGGTCAGATGTAAACGTGTCGCTAGGAGCATTGCCTCTGTAGGGCTTTATGTTCCTGGTGGAACTGCTGTTTTACCTTCTACAGCTCTGATGCTTTCAGTT : CCAGCACAAATTGCTGGATGTAAAACAGTTGTACTTGCAACTCCACCTTCTCGGGATGGCAGCATTTGCAAG : GAAGTGCTTTATTGTGCCAAAAAAGCGGGTGTGACCCACATCCTTAAAGCTGGAGGTGCTCAG : GCAATTTCTGCAATGGCCTGGGGCACTGAATCATGCCCAAAG : GTTGAGAAGATATATGGGCCTGGAAACCAGTATGTCACTGCTGCAAAAATGATTCTGCAG : AACAGCGAAGCGATGGTTTCAATTGACATGCCTGCTGGGCCTTCTGAAGTCCTTGTTATAGCTGACAAGCATTCCAGTCCTGTCCATGTGGCAGCAGATTTACTTTCACAG : GCGGAGCATGGGCCAGATAGCCAAGTCGTACTGGTTATTGCTGGGGATGGTGTTGATCTAAATGCCATTCAAGAGGAAATCATGAAGCAATGTCAAGCACTTCCAAGGGGAGAATTTGCACTTAAGGCACTAAGCCACAGCTTCACTGTGTTAGCACGGGATATGCTGGAG : GCAATTTCCTTCTCAAACATGTATGCACCTGAGCATCTGATAATCAATGTGGATGAAGCTGAGAAGTGGGAAAATTTAATTGAGAATGCAG : GTTCTGTATTTATGGGAAAGTGGACACCTGAGAGTGTAGGAGATTACGCAAGTGGAACTAACCATGTTCTTCCAACTTATGGGTATGCACGGATGTATGGTGGGGTCTCTTTGGACTCTTTCTTGAAGTACATCACTGTGCAGTCTTTGACAGAAGAAGGGCTGAGGAATCTTGGTCCTTACGTAGAGAAAATGGCCGAAGTTGAGGGTCTGGATGCCCACAAGAGGGCTGTAACCCTCAGACTACAGGACATAGAAGCGAGACAAGTATCACACTCAAGATGATCTCTCTATTTGTTTGCATGAAAGAATAATTATTGAGCATTGCAGCTGAGGTCGTTTATTAGTTTTGTTGAGGGGGTTTGAAGCTCTATATTACCTGCACTCTGATTTTTTTCCTTCCAAGTGTTGAATCAAACACACTTGGGAAGAAAAAACAGTAATGTGTAATGGTTACCATGGATGAGCTAGTGCATCTGCTGTATTTGTTTGAAATAAAATCAATCCAGATATCTGAGAAGATGATTATATCAAATCTAATTGTACTGAGTTTGAGGGTTGTATTTTAATTGGTCTTTCACCATGTTTTGTAACAAAAGTTGTATTGGAGCAAACATGTACTAATATTTTGGATTGTATCAAGAGGTTGCTTA</gDNA_template>
            <first_frame> P  T  W  V  S  T  S  Q  *  S  I  E  P  P  P  Q  S  T  Q  L  T  L  L  *  H  R  R  R  R  S  A  *  L  F  I  F  L  R  R  R  R  I  I  :  N  I  D  G  L  Q  H  S  I  I  E  *  V  L  *  L  G  *  *  S  S  G  N  S  Y  T  Q  Y  C  I  L  S  E  I  F  L  S  T  C  R :   V  N  S  *  V  N  *  V  L  N  E  V  V  *  V  I  G  A  Y  N  L  *  G  *  Q  P  Q  G  S  S  S  H  *  F  L  L  H  F  R  H   : S  S  T  H  C  *  R  C  S  *  *  R  *  C  C  S  *  R  :  L  H  I  A  V  *  Q  S  C  T  G  *  D  S  *  R  C  Q  *  A  S  R  S  R   : A  R  F  I  C  S  R  S  I  *  C  G  I  *  Q  H  I  C  L  S  C  C  S  K  A  C  *  E  S  C  *  E  H  A   : W  G  Q  M  *  T  C  R  *  E  H  C  L  C  R  A  L  C  S  W  W  N  C  C  F  T  F  Y  S  S  D  A  F  S   : S  S  T  N  C  W  M  *  N  S  C  T  C  N  S  T  F  S  G  W  Q  H  L  Q   : G  S  A  L  L  C  Q  K  S  G  C  D  P  H  P  *  S  W  R  C  S   : G  N  F  C  N  G  L  G  H  *  I  M  P  K   : G  *  E  D  I  W  A  W  K  P  V  C  H  C  C  K  N  D  S  A   : E  Q  R  S  D  G  F  N  *  H  A  C  W  A  F  *  S  P  C  Y  S  *  Q  A  F  Q  S  C  P  C  G  S  R  F  T  F  T   : G  G  A  W  A  R  *  P  S  R  T  G  Y  C  W  G  W  C  *  S  K  C  H  S  R  G  N  H  E  A  M  S  S  T  S  K  G  R  I  C  T  *  G  T  K  P  Q  L  H  C  V  S  T  G  Y  A  G   : G  N  F  L  L  K  H  V  C  T  *  A  S  D  N  Q  C  G  *  S  *  E  V  G  K  F  N  *  E  C  R :   F  C  I  Y  G  K  V  D  T  *  E  C  R  R  L  R  K  W  N  *  P  C  S  S  N  L  W  V  C  T  D  V  W  W  G  L  F  G  L  F  L  E  V  H  H  C  A  V  F  D  R  R  R  A  E  E  S  W  S  L  R  R  E  N  G  R  S  *  G  S  G  C  P  Q  E  G  C  N  P  Q  T  T  G  H  R  S  E  T  S  I  T  L  K  M  I  S  L  F  V  C  M  K  E  *  L  L  S  I  A  A  E  V  V  Y  *  F  C  *  G  G  L  K  L  Y  I  T  C  T  L  I  F  F  L  P  S  V  E  S  N  T  L  G  K  K  K  Q  *  C  V  M  V  T  M  D  E  L  V  H  L  L  Y  L  F  E  I  K  S  I  Q  I  S  E  K  M  I  I  S  N  L  I  V  L  S  L  R  V  V  F  *  L  V  F  H  H  V  L  *  Q  K  L  Y  W  S  K  H  V  L  I  F  W  I  V  S  R  G  C  L </first_frame>
            <second_frame>  Q  P  G  F  L  L  P  N  S  Q  L  N  H  H  H  K  V  H  N  S  L  C  C  D  T  A  G  D  D  L  L  N  S  S  S  F  S  G  D  D  V  *  L :   T  L  M  D  C  N  I  L  S  L  S  R  S  C  S  L  A  S  N  L  R  A  I  P  T  R  N  T  V  F  Y  R  K  Y  S  Y  L  P  A   : G  L  I  R  K  S  I  R  C  S  M  K  S  Y  K  L  S  E  L  T  T  S  E  V  D  S  L  K  A  R  P  R  I  D  F  S  S  I  F  G  T  :  V  Q  P  I  V  D  D  V  R  N  R  G  D  A  A  V  K  D :   Y  T  S  R  F  D  K  V  V  L  D  K  I  V  E  D  V  S  E  L  P  D  P  E  :  L  D  S  S  V  R  E  A  F  D  V  A  Y  N  N  I  Y  A  F  H  A  A  Q  K  P  V  E  K  V  V  E  N  M  H  :  G  V  R  C  K  R  V  A  R  S  I  A  S  V  G  L  Y  V  P  G  G  T  A  V  L  P  S  T  A  L  M  L  S  V  :  P  A  Q  I  A  G  C  K  T  V  V  L  A  T  P  P  S  R  D  G  S  I  C  K  :  E  V  L  Y  C  A  K  K  A  G  V  T  H  I  L  K  A  G  G  A  Q  :  A  I  S  A  M  A  W  G  T  E  S  C  P  K  :  V  E  K  I  Y  G  P  G  N  Q  Y  V  T  A  A  K  M  I  L  Q  :  N  S  E  A  M  V  S  I  D  M  P  A  G  P  S  E  V  L  V  I  A  D  K  H  S  S  P  V  H  V  A  A  D  L  L  S  Q  :  A  E  H  G  P  D  S  Q  V  V  L  V  I  A  G  D  G  V  D  L  N  A  I  Q  E  E  I  M  K  Q  C  Q  A  L  P  R  G  E  F  A  L  K  A  L  S  H  S  F  T  V  L  A  R  D  M  L  E  :  A  I  S  F  S  N  M  Y  A  P  E  H  L  I  I  N  V  D  E  A  E  K  W  E  N  L  I  E  N  A   : G  S  V  F  M  G  K  W  T  P  E  S  V  G  D  Y  A  S  G  T  N  H  V  L  P  T  Y  G  Y  A  R  M  Y  G  G  V  S  L  D  S  F  L  K  Y  I  T  V  Q  S  L  T  E  E  G  L  R  N  L  G  P  Y  V  E  K  M  A  E  V  E  G  L  D  A  H  K  R  A  V  T  L  R  L  Q  D  I  E  A  R  Q  V  S  H  S  R  *  S  L  Y  L  F  A  *  K  N  N  Y  *  A  L  Q  L  R  S  F  I  S  F  V  E  G  V  *  S  S  I  L  P  A  L  *  F  F  S  F  Q  V  L  N  Q  T  H  L  G  R  K  N  S  N  V  *  W  L  P  W  M  S  *  C  I  C  C  I  C  L  K  *  N  Q  S  R  Y  L  R  R  *  L  Y  Q  I  *  L  Y  *  V  *  G  L  Y  F  N  W  S  F  T  M  F  C  N  K  S  C  I  G  A  N  M  Y  *  Y  F  G  L  Y  Q  E  V  A   </second_frame>
            <third_frame>   N  L  G  F  Y  F  P  I  V  N  *  T  T  T  T  K  Y  T  T  H  S  A  V  T  P  P  A  T  I  C  L  T  L  H  L  S  P  A  T  T  Y  N   : *  H  *  W  T  A  T  F  Y  H  *  V  G  P  V  A  W  L  V  I  F  G  Q  F  L  H  A  I  L  Y  F  I  G  N  I  L  I  Y  L  Q  :  G  *  F  V  S  Q  L  G  A  Q  *  S  R  I  S  Y  R  S  L  Q  P  L  R  L  T  A  S  R  L  V  L  A  L  I  S  P  P  F  S  A  Q :   F  N  P  L  L  T  M  F  V  I  E  V  M  L  Q  L  K   : I  T  H  R  G  L  T  K  L  Y  W  I  R  *  L  K  M  S  V  S  F  Q  I  P  S :   S  I  H  L  F  A  K  H  L  M  W  H  I  T  T  Y  M  P  F  M  L  L  K  S  L  L  R  K  L  L  R  T  C  M :   G  S  D  V  N  V  S  L  G  A  L  P  L  *  G  F  M  F  L  V  E  L  L  F  Y  L  L  Q  L  *  C  F  Q  F :   Q  H  K  L  L  D  V  K  Q  L  Y  L  Q  L  H  L  L  G  M  A  A  F  A  R :   K  C  F  I  V  P  K  K  R  V  *  P  T  S  L  K  L  E  V  L  R :   Q  F  L  Q  W  P  G  A  L  N  H  A  Q  R :   L  R  R  Y  M  G  L  E  T  S  M  S  L  L  Q  K  *  F  C  R :   T  A  K  R  W  F  Q  L  T  C  L  L  G  L  L  K  S  L  L  *  L  T  S  I  P  V  L  S  M  W  Q  Q  I  Y  F  H  R :   R  S  M  G  Q  I  A  K  S  Y  W  L  L  L  G  M  V  L  I  *  M  P  F  K  R  K  S  *  S  N  V  K  H  F  Q  G  E  N  L  H  L  R  H  *  A  T  A  S  L  C  *  H  G  I  C  W  R :   Q  F  P  S  Q  T  C  M  H  L  S  I  *  *  S  M  W  M  K  L  R  S  G  K  I  *  L  R  M  Q  :  V  L  Y  L  W  E  S  G  H  L  R  V  *  E  I  T  Q  V  E  L  T  M  F  F  Q  L  M  G  M  H  G  C  M  V  G  S  L  W  T  L  S  *  S  T  S  L  C  S  L  *  Q  K  K  G  *  G  I  L  V  L  T  *  R  K  W  P  K  L  R  V  W  M  P  T  R  G  L  *  P  S  D  Y  R  T  *  K  R  D  K  Y  H  T  Q  D  D  L  S  I  C  L  H  E  R  I  I  I  E  H  C  S  *  G  R  L  L  V  L  L  R  G  F  E  A  L  Y  Y  L  H  S  D  F  F  P  S  K  C  *  I  K  H  T  W  E  E  K  T  V  M  C  N  G  Y  H  G  *  A  S  A  S  A  V  F  V  *  N  K  I  N  P  D  I  *  E  D  D  Y  I  K  S  N  C  T  E  F  E  G  C  I  L  I  G  L  S  P  C  F  V  T  K  V  V  L  E  Q  T  C  T  N  I  L  D  C  I  K  R  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0096H01.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95530" stop="95529"/>
                    <exon start="95313" stop="95195"/>
                    <exon start="94990" stop="94869"/>
                    <exon start="94762" stop="94710"/>
                    <exon start="93837" stop="93765"/>
                    <exon start="93661" stop="93560"/>
                    <exon start="93446" stop="93345"/>
                    <exon start="93242" stop="93171"/>
                    <exon start="93093" stop="93031"/>
                    <exon start="92893" stop="92852"/>
                    <exon start="91646" stop="91587"/>
                    <exon start="91447" stop="91337"/>
                    <exon start="91080" stop="90910"/>
                    <exon start="90716" stop="90626"/>
                    <exon start="89700" stop="89417"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1464</number_coding_nucleotides>
                  <number_encoded_amino_acids>488</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLMDCNILSLSRSCSLASNLRAIPTRNTVFYRKYSYLPAGLIRKSIRCSMKSYKLSELTTSEVDSLKARPRIDFSSIFGTVQPIVDDVRNRGDAAVKDYTSRFDKVVLDKIVEDVSELPDPELDSSVREAFDVAYNNIYAFHAAQKPVEKVVENMHGVRCKRVARSIASVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSRDGSICKEVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKIYGPGNQYVTAAKMILQNSEAMVSIDMPAGPSEVLVIADKHSSPVHVAADLLSQAEHGPDSQVVLVIAGDGVDLNAIQEEIMKQCQALPRGEFALKALSHSFTVLARDMLEAISFSNMYAPEHLIINVDEAEKWENLIENAGSVFMGKWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYITVQSLTEEGLRNLGPYVEKMAEVEGLDAHKRAVTLRLQDIEARQVSHSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 29 chains have been computed
$ 
$ memory statistics:
$ 35216 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 2201 bytes was the average size of a spliced alignment
$ 21736 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1552 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 30 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:49:01
-->
