<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:52:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0114O11-4SgcP/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0114O11-4SgcP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0114O11-4SgcP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g79560" ref_strand="+" ref_description="C2_At1g79560">
      <seq>aggaaggagaagatggcagaacaattagattcagtaaatgcgaggtatgtggttgaatttgacatgaaggaagttgagaacagccttcgcaaagatgtggttgagaagacaagagaaactcaaggaaccagggcattgtggatctcgaaaagatggtggagatatcgcccgaaacttccctatatctattttcttcaaaaacttgatacttctgaggtggctgctatagtcttcacagaggatctgaagagagtgtttgtcacaatgaaagaaggattccctcttgaatatattgttgatattccactagatcctttcttatttgagatgatatcaagttctggagctgaagtagatctacttcagaagcggcagattcactactttttcaaagttctttttgctttattgcctggaatactgattttgtggtttataagagaatctatgatgcttctgaacatcacgacaaatcgcctcctctataagaaatataaacaactcttcgatatggcttatgctgaaaattttattttgttggagaagttggtgagacgaaatcgatgtataaagaaatagtattgggaggagatgtttgggatcttttggatgaattgatgatttatatgggaaatccaatgcagtattatgagaaagatgtcaaatttgtgcggggtgtgcttctgtctggcccccctggaacaggtaaaacactgtttgctcggacacttgcaaaggaaagtgggatgccttttgtatttgcttctggtgcagagtttactgatagtgaaaagagtggtgctgcacgaatcaatgaaatgttttctgttgctaggagaaatgctccagcttttgtatttatagatgagattgatgctattgctggaaggcatgcaagaaaggatccacgcaggaaggcaacatttgaggctctgatttctcagcttgacggggagaaagaaaaaactggtgttgataggttttcactaagacaagctgtcatattcatctgtgcaaccaatcggccagatgaactggacttagaatttgtccgccctggacgtattgacagacgtgtgtatattggtttaccagatgcaaagcaacgagtgcaaatttttggagttcacagtgctgggaaacagctttccgaggatattgcctttgagaaacttgtctttcgtacagttggatattctggggcagacataagaaatctagtcaatgaagctggaataatgtctgtaagaaaaggacattctaagatcaaccagcaggatatcgtcgatgttttggacaagcaattgcttgagggtatgggtgttctcctgacagaggaagagcagcagaagtgtgagcaaagtgtatctcgtgaaaaaagacaattgttggcagtacatgaagctggtcacattgtgttggcgcacttgttccctcagtttgattggcatgctttttctcagcttctacctgngggaaaggaaactgcagtatcagttttctaccctagagaagatgtggttgatcaaggttatacaacctttggctacatgaaaatgcaaatggtagtagctcatggcgggcgctgtgccgaacgtattgtatttggtgatgacattactgatggaggagtagatgatctagaaaagattaccaagattgctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0114O11-4SgcP/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLm0114O11.1" temp_strand="+" temp_description="C02SLm0114O11.1  AC215491.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0114O11 sequenced_by:kribb upload_account_name:korea">
        <position start="23549" stop="30880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23849" g_stop="24064" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24065" i_stop="24438" i_length="374">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24439" g_stop="24516" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="294" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24517" i_stop="24606" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24607" g_stop="24849" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="537" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24850" i_stop="24946" i_length="97">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24947" g_stop="25083" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="674" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25084" i_stop="25167" i_length="84">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25168" g_stop="25335" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="842" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25336" i_stop="26551" i_length="1216">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="26552" g_stop="26664" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="955" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26665" i_stop="27326" i_length="662">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27327" g_stop="27543" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1172" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27544" i_stop="28897" i_length="1354">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28898" g_stop="28969" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1173" r_stop="1244" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="28970" i_stop="29982" i_length="1013">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.164" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29983" g_stop="30102" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1245" r_stop="1364" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="30103" i_stop="30184" i_length="82">
            <donor d_prob="0.918" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="30185" g_stop="30301" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1365" r_stop="1481" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="30302" i_stop="30395" i_length="94">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="30396" g_stop="30572" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1482" r_stop="1658" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0114O11.1" gen_strand="+" ref_id="C2_At1g79560" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1658</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0114O11.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At1g79560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23849" e_stop="24064"/>
          <exon e_start="24439" e_stop="24516"/>
          <exon e_start="24607" e_stop="24849"/>
          <exon e_start="24947" e_stop="25083"/>
          <exon e_start="25168" e_stop="25335"/>
          <exon e_start="26552" e_stop="26664"/>
          <exon e_start="27327" e_stop="27543"/>
          <exon e_start="28898" e_stop="28969"/>
          <exon e_start="29983" e_stop="30102"/>
          <exon e_start="30185" e_stop="30301"/>
          <exon e_start="30396" e_stop="30572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGGAGAAGATGGCAGAACAATTAGATTCAGTAAATGCGAGGTATGTGGTTGAATTTGACATGAAGGAAGTTGAGAACAGCCTTCGCAAAGATGTTGTTGAGAAGACAAGAGAAACTCAAGGAACCAGGGCATTGTGGATCTCGAAAAGATGGTGGAGATATCGCCCGAAACTTCCCTATACCTATTTTCTTCAAAAACTTGATACTTCTGAGGTAAATGTTTATCTTCTCACTTCTGTATCTCTTCATACTCAGATATGGTTGGTCCCTTCTGGTTCTAATGCTTCCAAGTGGAAATAAGTGTGGATGCTTTTAAATCTACAGTATTAATGAATACATGGTACATTTTAAGGATTGTACTTCAAGTTGTGGCATGGGTGACTTGATGCCACCCTATTCTTCATTCTTTTGAATGATGTTATAAGGGAAAATAGCAAAAGATAGATTTCTTAAAGAAAACAGTTTCCTTTTCTTGAACTCTAGCTGGAAACTAAAATTATCTTTTACATGTGGATCAAACTAATTTATTTTCTTTACTTGGATATGGACGCACTTCCAACTAGATTTACTGACTTAGTGTTCTGCAGGTGGCTGCTATAGTCTTCACAGAGGATCTGAAGAGAGTGTTTGTCACAATGAAAGAAGGATTCCCTCTTGAATATATTGTGCGTAAGACATATTAACCTTTCCAGAATAAAGTCATCACTGTTCCTGAACTCCTGACCTTTATACTGATTAATGTATTCTCTTCTCAGGTTGATATTCCACTAGATCCTTTCTTATTTGAGATGATATCAAGTTCTGGAGCTGAAGTAGATCTACTTCAGAAGCGGCAGATTCATTACTTTTTCAAAGTTCTTTTTGCTTTATTGCCTGGAATACTGATTTTGTGGTTTATAAGAGAATCTATGATGCTTCTGAACATCACGACAAATCGCCTCCTCTATAAGAAATATAAACAACTCTTCGATATGGCTTATGCTGAAAATTTTATTTTGGTAACTTTTCATCATCTAATACTAGTCTCTTTTATTTTTCTGAATATTTTGAATCTACAGTCACCTTTTAACTCCTATTCCTTGCCTACTTAGCCAGTTGGAGAAGTTGGTGAGACGAAATCGATGTATAAAGAAATAGTATTGGGAGGAGATGTTTGGGATCTTTTGGATGAATTGATGATTTATATGGGAAATCCAATGCAATATTATGAGAAAGATGTCAAATTTGTGCGGGTAAACTCAATGATCCTTTCCAGACGTGCTAAAACTATATACTATGTAAATCTTGTTCAGTATGATTCATTTAATGCACTGCAGGGTGTGCTTCTGTCTGGCCCCCCTGGAACAGGTAAAACACTGTTTGCTCGGACACTTGCAAAGGAAAGTGGGATGCCTTTTGTATTTGCTTCTGGTGCAGAGTTTACTGATAGTGAAAAGAGTGGTGCTGCACGAATCAATGAAATGTTTTCTGTTGCTAGGAGAAATGTAAGTCTACTTCTTCTAATAAAAAAATTGACATCATATAGGGATGGGAATGTTCCTCAAAGTAAAAAAATTGCATCTTATGATTTCTATACCGAAAGCAGCTACCAGTCAAATGTTAAAGGGGGTGGGGGGGGGGGGGGGTAAGTCTCCAAGGAAACTTCTAAACCAGTAACAAATATTCAGTCTAACTCAAAACCAGAAACTTATTTTTGTCTAGTGTGCTTTTACGATGCATTAAGCATAAGTTACTTTAGCTGTTAGTCTTTTTTCAATTTATGTTAAACTCTTGGTCTCACTATTTGAAGTTTGAACCAAACACGAATAACCAGGTCTTGAGCATGCTGAGTAACTACTGGGGATGAAGTACAACAACAACAATCCAGTATATTCCCTCATGTGGAGTCTGTGGAGGGTCAGGTGTACGCAGATTCCTACCTTGAGGGGGTATAGAGGTTGTTTTCCGATATACCCTTGGTTCGAGAATAGTTTTGAAAGAAGAACAAGAGTAAAAATCAATGATGAGGATAATGAAGAAAGTAAAGCACTGAGAGTAAAATAGTGTAGATAACCAAAGTAAATGAAACATCACCAGTGTTTTGGAGAGTGAGAAGCGGAAAAGAGCGACAAGGGCTCGGCGTGAAGCAAAGCACACTTCTTTCAACTGAACTGCTATTCAATACAAAAATAAAGAAATATCAAATATGTTTTACTATCTTACCTAATTTGGCCCACTTCGTGCCCCAGAAGGTAGCACTTAATACGAAAATATTAGCCATGTGGGTGCATATACTGGCTGGTACTTCTTGCGGTAGCGGAAGCTATTTGTGTCTACTAAGATCGTAGATGTTTTGATACCATGTGAAAATAATTAAAAAACTTCTCATGAACTTGATTAACAAGGTACAAGAGGTGGTCCTTATAGGAGTATTAGGTTACATATAGTAAGAAGGTAATCGATCTCTATGCTGATAAGGTTAATAAATTCTATTTATTAAATACAATATATGCTAAGGTACCTTATAAATTTTTTAAAATGAATTTCCTTGGGTTGAGGCCCTTTTCCCAACCCTACTGCATTTATGACCGGTCTGCCTTTTTTTTTTAATGTACAAGAAACAAGATTATATGAATCTAGACACATATTTACTCGTAATTCAACAATTTACTTTTGCTAATTCAAGGGGATAAAATTTACATTCAGTTGTCCTCTTTGTAGGCTCCAGCTTTTGTATTTATAGATGAGATTGATGCTATTGCTGGAAGGCATGCAAGAAAGGATCCACGCAGGAAGGCAACATTTGAGGCTCTGATTTCTCAGCTTGACGGGGAGTGAGTATCGTAATCTCATTTCATGGATATAATACTCTTCTTTGCAATGAAAATTTCATATTGGAGAACACTATAGTACAGCTGTTTTTGATGAGATCTGATTCTAGAATCTTATTCTGCAGTCTGGTTGATATGGCTTCTCAAAGAAGAACATTTCCCTTTCTTCCCTACCCTGTCTACAATCTTTAGCCAGTGAAATCTTTTGCTGTTGAATTATGCATTTTTATATTATGAGGCAATGAAAAATCTTGTGAACTTTGGAGTCTTTTGCTCTTTTTGTCGAACTATGAACAAATATGAGTTAATGTGTCTTGGCAAATTGACTAACTTGCAGCACCTAACAGTTTAATTAATATGTGGACATCACTTTATAATGTCCTTTAAGTGTTGTTTCAAAGAAGAGAAAATATGACGCATGTTCTGTTTGCATCTTCTGTTACGAGTTAGCAATATTTTCTCATACTGGAAACGCCAAGATTTCTGTGATTATTTATTTTGGTATGTTTATCAAGTGTACTGCTAGAGATAGAAATTACAGTAACATGCCTAGCAAAAAAGATTACTCTAATATTCTAGAGAAGTATTGAAGGCAAAGCCATTTTTTCTCTCCTATATCCCTGTATGGTTGTGCAGCCAAGATAATAAAGGACTTGTTTGTGCAGGAAAGAAAAAACTGGTGTTGATAGGTTTTCACTAAGACAAGCTGTCATATTCATTTGTGCAACCAATCGGCCAGATGAACTGGACTTAGAATTTGTCCGCCCTGGACGTATTGACAGACGTGTGTATATTGGTTTACCAGATGCAAAGCAACGAGTGCAAATTTTTGGAGTTCACAGTGCTGGGAAACAGCTTTCCGAGGATATTGCCTTTGAGAAAGTAAATCACTTGCTTCATTACCCCTTTTTTTCCACTAATCCATTCATTCTTATTCATTACTGAGTCATTAAGTAATAAAAGCTACAAATGTAACATTTTTTTCAACCCAACAAAAGCACTACCCTTTAACTTGCCCAAAATCCAAACAACCCCAAACACCTGTCTAAGAACTAGTAAATTCGGCAACAGCCTTAGAGCGTGTTTGGTTTGACTTATTTTAGGTGCTTTTAAGATAAAATAGTTTTATAGCAGTTTTGGAGTGTTTGGATAAAATAAAAAAATGGTTTGGACTTGGGACTTCCATGTTGGATGTCTCAAGTTCGAAACCCCTTGCTAGCGAAAGAAAGGGGTTTGCCTTCTGGGTCGAGCTCGTCGCATCGGGCTTGCCTAGTGCTGGTTACCTCTCCTATGTAGTTTATTGCATAGGAGCGGGAGTTTTACCTTGTGCGGACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATTAGAAAAAAAAAGTGCTTATAAGCACCTGTTTTAAGCCAAAATAACATAAATAACTTATGGCTTATAAGTCATAAGCCAAAAGCCAATCCAAACAGGCTCTTTGTCCTCTTAGTTCAGAAACATCATGTTTAGCCAACTCACCGGACAACAAAAGCCTAACAGCAGTCTGAATTTCCCTAGAAGTGATAGTAGGCTTCTTATTATACCTAGCCAATCTTGAAGACTCCTGAGCAAGCTTCTCAACTATATCATTGATGAAATTGTTCATGTTCCCCATAGTCTTGCTTGAAATATCAATATCTGGGTGAACTTGATTCAGCACCTTGAAAATGTAGATGTAAGTCTCAACAGTCAACACTCTTTTCATTGTCAGCACCACCAGCACCTGATTTCTTTGGTAACTTCTTCCCTGCCCTTGGATTCTTCTCTGCTGGTGCTTTTTCAGCCTTTCCTCCTCTGTTGCTGCTGGTTTCCTCTCTGCTGGATTTTTATCTGCTTTTTGTGCCAATGAAACAGAAATTCAGAATCTGAAAATGGGTTACTAAGAAAAGGGAAGTAAAAGATTCTTGGCTTGTGAAATGAGTTTGTCTTGGTGCTTCATTAGTTCTCATTGTTGGCTTGGGATCTCCTCTTCCAGTTGATTTGCTTGAATGTAAAATTACTTTCACGTTATATACAGCTTCTTTCAAGGGTTAGCAGCAACACTACTGCAGTGTAGTAACTGCACATGCCAAAAGCTAGTTGTTCCTTTCTTGTACTTAGTTGCTAGAAGACAATGATGTTCTTTTTGTTAGACTTAATGTATGCTCCATTTGGGCTCAGGTTTAGGAATTTGATTGTTGAACTGTATTCCTTGCACTTCTGCAGCTTGTCTTTCGTACAGTTGGATATTCTGGGGCAGACATAAGAAATCTAGTCAATGAAGCTGGAATAATGTCTGTAAGTTTGTTCTTTGTATTTTCCGTTGATATATAACGTCTCTACTCACTTTTGGAGCTTCATATTAGTTGACGGTTGACCTATTGTTTTCTTGACAAGTTCTGTTATCTTAAACAATGTATGTTATTGACAATTGACTTCAAATAATTAACATTGAGACTTGTAGAACACAACATACATTTTTTTCTTGTAAAAATGTATATTAGATTGCATATTTGAGATCATGTAATTAGCTTTTTGCTGTAACGGTAGACTTCACAGCATGATTTTCTTGGGAAAAAAAAAAGAAAATTTAATGGTGGATAGCGAGGAGTTTACCTTTTGGATCGAGCTCGTCGCATTGGGCCTGCCTAGTGCGGGTTAACTCTCTTGTGTGGTTTGCGAGTATTGCATAGGAGCAAGAGTTTTACCTTGTGTGCACCCAAAGAGTAGCGAGTGTAAGTTTCCCTTGACATCAAAAAATTAGGTGGTGGATAGGAAAACATAGAATATTTTAAGAGAAGTAAATGAGGCAAGCTTAGGTGGCTCCGACTGAAAGTTGTTGAGCAGATTCCTGGAAAGTAAACCAACGAGCTGTCACCACAAGTGCCTTTTAAAATCACCTTTCTTAATGATCAATTTATCTATAGCAGGGGAAAACACAAACCATAAAATTGATTAAAACATCTTCTCAGGCACCCTTATAACTTAAGTGCATGCATCGCCTAACCTCCACCTTAACTCCTCCATCACATACCAATATCAAACAGACACTGATAAATCCAAACTTCGACGACTGATTAAACTAATTAAAACTTAAAATATATGTGATATATGCTAACTACTGTCCTCATTAGGAATCATTATTATAAGATTAAGGCTCGGTTAATCCAAGTTGAAATAGGGTGTCTTTCCAGTTTCACTCTTTTTAAATAGGGTGTCTTATCACTTATGTATGGAGGGAAGATGTTTTCCTCAAGGACAATCATGTTTTCTGGCTTTCCATTTTCTTGAGAGTGGTAGCTTACATGCAGGTAAGAAAAGGACATTCTAAGATCAACCAGCAGGATATCGTCGATGTTTTGGACAAGCAATTGCTTGAGGGTATGGGTGTTCTACTGACAGAGGAAGAGCAGCAGAAGTGTGAGCAAAGTGTATGCAATCTTACCCTGTTGCTCCTAAAAAGAACAAGATGTATTGGTTTATTGTTTTGATCGATTTGAAAATTTGTAATAGGTATCTCGCGAAAAAAGACAACTGTTGGCAGTACATGAAGCTGGTCACATTGTGTTGGCGCACTTGTTCCCTCAGTTTGATTGGCATGCTTTTTCTCAGCTTCTACCTGGGGGCAAGGTGTATTATGTTTTCTGTGAACATAAGTTGTGTCATATTCATTCCAAGCTTTTGTTGACTCCAGTACTCAACTGTTGCTCGTTTGTCTGACCAGGAAACTGCTGTATCAGTTTTCTACCCTAGAGAAGATGTGGTTGATCAAGGTTATACAACCTTTGGCTACATGAAAATGCAAATGGTAGTAGCTCATGGCGGGCGCTGTGCCGAACGTATTGTATTTGGTGATGACATTACTGATGGAGGAGTAGATGATCTAGAAAAGATTACCAAG</genome_strand>
        <mrna_strand>AGGAAGGAGAAGATGGCAGAACAATTAGATTCAGTAAATGCGAGGTATGTGGTTGAATTTGACATGAAGGAAGTTGAGAACAGCCTTCGCAAAGATGTGGTTGAGAAGACAAGAGAAACTCAAGGAACCAGGGCATTGTGGATCTCGAAAAGATGGTGGAGATATCGCCCGAAACTTCCCTATATCTATTTTCTTCAAAAACTTGATACTTCTGAG......................................................................................................................................................................................................................................................................................................................................................................................GTGGCTGCTATAGTCTTCACAGAGGATCTGAAGAGAGTGTTTGTCACAATGAAAGAAGGATTCCCTCTTGAATATATT..........................................................................................GTTGATATTCCACTAGATCCTTTCTTATTTGAGATGATATCAAGTTCTGGAGCTGAAGTAGATCTACTTCAGAAGCGGCAGATTCACTACTTTTTCAAAGTTCTTTTTGCTTTATTGCCTGGAATACTGATTTTGTGGTTTATAAGAGAATCTATGATGCTTCTGAACATCACGACAAATCGCCTCCTCTATAAGAAATATAAACAACTCTTCGATATGGCTTATGCTGAAAATTTTATTTTG.................................................................................................TTGGAGAAGTTGGTGAGACGAAATCGATGTATAAAGAAATAGTATTGGGAGGAGATGTTTGGGATCTTTTGGATGAATTGATGATTTATATGGGAAATCCAATGCAGTATTATGAGAAAGATGTCAAATTTGTGCGG....................................................................................GGTGTGCTTCTGTCTGGCCCCCCTGGAACAGGTAAAACACTGTTTGCTCGGACACTTGCAAAGGAAAGTGGGATGCCTTTTGTATTTGCTTCTGGTGCAGAGTTTACTGATAGTGAAAAGAGTGGTGCTGCACGAATCAATGAAATGTTTTCTGTTGCTAGGAGAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGCTTTTGTATTTATAGATGAGATTGATGCTATTGCTGGAAGGCATGCAAGAAAGGATCCACGCAGGAAGGCAACATTTGAGGCTCTGATTTCTCAGCTTGACGGGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAAAAAACTGGTGTTGATAGGTTTTCACTAAGACAAGCTGTCATATTCATCTGTGCAACCAATCGGCCAGATGAACTGGACTTAGAATTTGTCCGCCCTGGACGTATTGACAGACGTGTGTATATTGGTTTACCAGATGCAAAGCAACGAGTGCAAATTTTTGGAGTTCACAGTGCTGGGAAACAGCTTTCCGAGGATATTGCCTTTGAGAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCTTTCGTACAGTTGGATATTCTGGGGCAGACATAAGAAATCTAGTCAATGAAGCTGGAATAATGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGAAAAGGACATTCTAAGATCAACCAGCAGGATATCGTCGATGTTTTGGACAAGCAATTGCTTGAGGGTATGGGTGTTCTCCTGACAGAGGAAGAGCAGCAGAAGTGTGAGCAAAGT..................................................................................GTATCTCGTGAAAAAAGACAATTGTTGGCAGTACATGAAGCTGGTCACATTGTGTTGGCGCACTTGTTCCCTCAGTTTGATTGGCATGCTTTTTCTCAGCTTCTACCTGNGGGAAAG..............................................................................................GAAACTGCAGTATCAGTTTTCTACCCTAGAGAAGATGTGGTTGATCAAGGTTATACAACCTTTGGCTACATGAAAATGCAAATGGTAGTAGCTCATGGCGGGCGCTGTGCCGAACGTATTGTATTTGGTGATGACATTACTGATGGAGGAGTAGATGATCTAGAAAAGATTACCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0114O11-4SgcP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g21520" ref_strand="+" ref_description="C2_At4g21520">
      <seq>cggaaacccctattgaagctgtagaagagaaaccatcggaagaaccttacccttggccggttattcagtatgatgttccgccgtatctaacctatcatttcttcaatcagttcaggacgccttcaaaccctaataatttcttaaagggtgtcaaatggtctcctgatggttctggtttcctcacttgctctgatgataataccttttgtttatataacttgccatatgatgaaagtggacagcttgctgatttttcctcatcagctgctgatacagattcgtatgctgcaagtcttgtcatgagtgacggggagtctgtatatgactattgctggtatccctatatgtcttcttcaagtccagagacgtgtgtttttgcaagtactacccgtgatcaccctattcatctctgggatgctactactggacagttacgctgtacataccgtgcttatgatgccatggacgagatcactgctgccttttcgattgccttcaatcccgcagggactaagatatttgctggttacaacaaatccataagaatatttgatattcatcggcctggcagagattttacccagcactccacccttcaaggaaataaagaagggcaatcaggcattatatcctcaatggctttctgtccaagccattcaaggttactggcaactggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0114O11-4SgcP/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLm0114O11.1" temp_strand="+" temp_description="C02SLm0114O11.1  AC215491.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0114O11 sequenced_by:kribb upload_account_name:korea">
        <position start="134161" stop="137181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134461" g_stop="134617" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134618" i_stop="134719" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134720" g_stop="134782" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="220" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134783" i_stop="135269" i_length="487">
            <donor d_prob="0.672" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135270" g_stop="135325" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="276" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135326" i_stop="135505" i_length="180">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135506" g_stop="135586" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="357" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135587" i_stop="135667" i_length="81">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135668" g_stop="135741" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="431" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135742" i_stop="135894" i_length="153">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135895" g_stop="135977" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="514" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="135978" i_stop="136444" i_length="467">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.634" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136445" g_stop="136551" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="621" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="136552" i_stop="136824" i_length="273">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="136825" g_stop="136881" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="678" r_length="57" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0114O11.1" gen_strand="+" ref_id="C2_At4g21520" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0114O11.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At4g21520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134461" e_stop="134617"/>
          <exon e_start="134720" e_stop="134782"/>
          <exon e_start="135270" e_stop="135325"/>
          <exon e_start="135506" e_stop="135586"/>
          <exon e_start="135668" e_stop="135741"/>
          <exon e_start="135895" e_stop="135977"/>
          <exon e_start="136445" e_stop="136551"/>
          <exon e_start="136825" e_stop="136881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAACCCCTATTGAAGCTGTAGAAGAGAAACCATCGGAAGAACCTTACCCTTGGCCGGTTATTCAGTATGATGTTCCGCCGTATCTAACCTATCATTTCTTCAATCAGTTCAGGACGCCTTCAAACCCTAATAATTTCTTAAAGGGTGTCAAATGGTATGCTTTTCTCCTCTTTTTGATTCTCCATTTCTTATGCCGTGTTTTCTCTGTTTTTTCCCTATGTAGTCTAATGGCTATTTTTTTTTCCTGGAATTATAGGTCTCCTGATGGTTCTGGTTTCCTCACTTGCTCTGATGATAATACCTTTTGTTTATATAACTTGTAAGTTTCTTCCCAGTTTCTGATGATAAATGATAAATTTCTTTGTAGGAGCAAATTAGAAATATATGAATTCGAAGTCTCGAATAACTGTTAAGCTTATATGAGTAGCTTCTCTTGTAACTTTTTGGTGATTGGATCTGCTGGGATTAAAATTTATTGACAGATAGAGTTTCATTTAACTCTGCCTGTGTGATCTTAGCTTTCCGGTCAAAGCCTGGATATCGTGAGAAAGGTTGTGGTAGGTTGATAACTAGCATTAAAAATAGTCATGATATGATGAATCATCTAAACATAGAGGGGAATGGATATAGATAATTCATATAGACAGACTCAAGGAGTTTGTGATTGAGATACATTAATTCATTGACCAGATAGTGTTTGCTGGGCTGACTATGAGGCACAATGCTGATAGTAGAAAATGGTAGTTATTCTTGCATTTCCATTGTCCTTGAGTTGCTTTGTTAATTTGGCTCTGGTTCATTGATAGGCCATATGATGAAAGTGGACAGCTTGCTGATTTTTCCTCATCAGCTGCTGATACAGGTAATATATGCTACTAGTTTATATAGGTTTGAATGTGAAGTAACATTGTGGAAGTATGCTATAGTAGATTGCTTTCAGTGTTGGAATTTGTTGATCATGTGTGTTCAATATTGAACTTGATATGATTTTCTTTCTCCTGTTTTTGTTTATTTTGATTAAACACTGACTGTTTTTTTGCAGATTCGTATGCTGCAAGTCTTGTCATGAGTGACGGGGAGTCTGTATATGACTATTGCTGGTATCCCTATATGTCTTCTTCAAGTATGTCACTCGTCTTGTTATTTTGTTATAACGCTGATGGTGATTAGAAAAAAATAACTAGAATTTGCTTTAATGCCTTAGGTCCAGAGACATGTGTTTTTGCAAGTACTACCCGTGATCACCCTATTCATCTCTGGGATGCTACTACTGGACAGGTGTGTCATTGTCTTTAAAGCTGTTGCTAAAGATGCTTTTTCCTCTCACTGCTCTTTGAAAGGTGGCTAGCAGCCCACGACTTGTGACACTGCTCAATGAGCTTTGCTAGGAAGATATTCTTCCCTACATTATCTTTTCTTGGGTGATTGCAGTTACGTTGTACATACCGTGCTTATGATGCCATGGACGAGATCACTGCTGCCTTTTCAATTGCCTTCAATCCCGCAGGGACTAAGTAAACATTCTTCTTTATCAAAGTGCTCATCTCCTTCCTTGCTCTTGTGGTCACTGTTCATGTAGAGGCACCTGTTTCATCTTTCTTTAATATTTATTTGTAGTTTTTTAAAGAGAGGAAAAAATGAGTTCTTTTGATTTATTGAGAAAGTAATCTATCCATAATTTCTGGCAGTGTGATTAGATTGACAGTAATGAGGCCTAGTTGTTAATTTAGGTGGTTGCAAGTTTTGATACTCTGTCCTCACAAAGGATCATTTTCCTATTTTGTTTTTTCATTATATTGTTTAGACTTAAAGACATGCATTTTCAGTTTTTCTTCTAGTATCTTCTTACTTCATATGCTCTATACTAACTTCTTATGTGTTATTGTGATTTGCTTCACTTTCTTTATTTATGTACTTACAGTTGTTAATATGCTAAGTTTAAACGAAAGTTTTCATTGTTACTTCATTCTTCTCGAATTAGGATATTTGCTGGTTACAACAAATCCATAAGAATATTTGATATTCATCGGCCTGGCAGAGATTTTACCCAGCACTCCACCCTTCAAGGAAATAAAGAAGGGCAATCAGGTATGTTCAGCTAGCTGCTTTTCTTTATGATCACGTTTTTAGCATTTGACTTTATAAATAAGACAATTAGCTAACAATATCTGTGTTAAACACATCAATCTGATAGTTATCTCAAAGAGAAACTATTAAGTCCTCTTGAGGCTAATTAATTTTACCACTTTTGATGCCTCCATTATTATTCATTAAACATTTATTACTCTGGCACCTTTTCTCTAATCTGTTAAGGCATTATTCCTCATTTATTATTCCAACTCCTTTTCTCTTATCTGTTAGGAATTATATCCTCAATGGCTTTCTGTCCAAGCCATTCAGGGTTATTGGCAACTGGCT</genome_strand>
        <mrna_strand>CGGAAACCCCTATTGAAGCTGTAGAAGAGAAACCATCGGAAGAACCTTACCCTTGGCCGGTTATTCAGTATGATGTTCCGCCGTATCTAACCTATCATTTCTTCAATCAGTTCAGGACGCCTTCAAACCCTAATAATTTCTTAAAGGGTGTCAAATG......................................................................................................GTCTCCTGATGGTTCTGGTTTCCTCACTTGCTCTGATGATAATACCTTTTGTTTATATAACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATATGATGAAAGTGGACAGCTTGCTGATTTTTCCTCATCAGCTGCTGATACAG....................................................................................................................................................................................ATTCGTATGCTGCAAGTCTTGTCATGAGTGACGGGGAGTCTGTATATGACTATTGCTGGTATCCCTATATGTCTTCTTCAA.................................................................................GTCCAGAGACGTGTGTTTTTGCAAGTACTACCCGTGATCACCCTATTCATCTCTGGGATGCTACTACTGGACAG.........................................................................................................................................................TTACGCTGTACATACCGTGCTTATGATGCCATGGACGAGATCACTGCTGCCTTTTCGATTGCCTTCAATCCCGCAGGGACTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTTGCTGGTTACAACAAATCCATAAGAATATTTGATATTCATCGGCCTGGCAGAGATTTTACCCAGCACTCCACCCTTCAAGGAAATAAAGAAGGGCAATCAG.................................................................................................................................................................................................................................................................................GCATTATATCCTCAATGGCTTTCTGTCCAAGCCATTCAAGGTTACTGGCAACTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0114O11-4SgcP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1438" ref_strand="+" ref_description="T1438">
      <seq>ggttattcactatgatgttccgccgtatctaacctatcatttcttcaatcagttcaggacgccttcaaaccctaataatttcttaaagggtgtcaaatggtctcctgatggttctggtttcctcacttgctctgatgataataccttttgtttatataacttgccatatgatgaaagtggacagcttgctgatttttcctcatcagctgctgatacagattcgtatgctgcaagtcttgtcatgagtgacggggagtctgtatatgactattgctggtatccctatatgtcttcttcaagtccagagacgtgtgtttttgcaagtactacccgtgatcaccctattcatctctgggatgctactactggacagttacgctgtacataccgtgcttatgatgccatggacgagatcactgctgccttttcgattgccttcaatcccgcagggactaagatatttgctggttacaacaaatccataagaatatttgatattcatcggcctggcagagattttacccagcactccacccttcaaggaaataaagaagggcaatcaggcattatatcctcaatggctttctgtccaagccattcaaggttactggcaactggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0114O11-4SgcP/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLm0114O11.1" temp_strand="+" temp_description="C02SLm0114O11.1  AC215491.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0114O11 sequenced_by:kribb upload_account_name:korea">
        <position start="134219" stop="137181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134519" g_stop="134617" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134618" i_stop="134719" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134720" g_stop="134782" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="162" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134783" i_stop="135269" i_length="487">
            <donor d_prob="0.672" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="135270" g_stop="135325" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="218" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="135326" i_stop="135505" i_length="180">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="135506" g_stop="135586" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="299" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="135587" i_stop="135667" i_length="81">
            <donor d_prob="0.911" d_score="1.00"/>
            <acceptor a_prob="0.686" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="135668" g_stop="135741" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="373" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="135742" i_stop="135894" i_length="153">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="135895" g_stop="135977" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="456" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="135978" i_stop="136444" i_length="467">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.634" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="136445" g_stop="136551" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="563" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="136552" i_stop="136824" i_length="273">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.447" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="136825" g_stop="136881" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="620" r_length="57" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0114O11.1" gen_strand="+" ref_id="T1438" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0114O11.1" gen_strand="+"/>
        <rDNA rDNA_id="T1438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134519" e_stop="134617"/>
          <exon e_start="134720" e_stop="134782"/>
          <exon e_start="135270" e_stop="135325"/>
          <exon e_start="135506" e_stop="135586"/>
          <exon e_start="135668" e_stop="135741"/>
          <exon e_start="135895" e_stop="135977"/>
          <exon e_start="136445" e_stop="136551"/>
          <exon e_start="136825" e_stop="136881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTATTCAGTATGATGTTCCGCCGTATCTAACCTATCATTTCTTCAATCAGTTCAGGACGCCTTCAAACCCTAATAATTTCTTAAAGGGTGTCAAATGGTATGCTTTTCTCCTCTTTTTGATTCTCCATTTCTTATGCCGTGTTTTCTCTGTTTTTTCCCTATGTAGTCTAATGGCTATTTTTTTTTCCTGGAATTATAGGTCTCCTGATGGTTCTGGTTTCCTCACTTGCTCTGATGATAATACCTTTTGTTTATATAACTTGTAAGTTTCTTCCCAGTTTCTGATGATAAATGATAAATTTCTTTGTAGGAGCAAATTAGAAATATATGAATTCGAAGTCTCGAATAACTGTTAAGCTTATATGAGTAGCTTCTCTTGTAACTTTTTGGTGATTGGATCTGCTGGGATTAAAATTTATTGACAGATAGAGTTTCATTTAACTCTGCCTGTGTGATCTTAGCTTTCCGGTCAAAGCCTGGATATCGTGAGAAAGGTTGTGGTAGGTTGATAACTAGCATTAAAAATAGTCATGATATGATGAATCATCTAAACATAGAGGGGAATGGATATAGATAATTCATATAGACAGACTCAAGGAGTTTGTGATTGAGATACATTAATTCATTGACCAGATAGTGTTTGCTGGGCTGACTATGAGGCACAATGCTGATAGTAGAAAATGGTAGTTATTCTTGCATTTCCATTGTCCTTGAGTTGCTTTGTTAATTTGGCTCTGGTTCATTGATAGGCCATATGATGAAAGTGGACAGCTTGCTGATTTTTCCTCATCAGCTGCTGATACAGGTAATATATGCTACTAGTTTATATAGGTTTGAATGTGAAGTAACATTGTGGAAGTATGCTATAGTAGATTGCTTTCAGTGTTGGAATTTGTTGATCATGTGTGTTCAATATTGAACTTGATATGATTTTCTTTCTCCTGTTTTTGTTTATTTTGATTAAACACTGACTGTTTTTTTGCAGATTCGTATGCTGCAAGTCTTGTCATGAGTGACGGGGAGTCTGTATATGACTATTGCTGGTATCCCTATATGTCTTCTTCAAGTATGTCACTCGTCTTGTTATTTTGTTATAACGCTGATGGTGATTAGAAAAAAATAACTAGAATTTGCTTTAATGCCTTAGGTCCAGAGACATGTGTTTTTGCAAGTACTACCCGTGATCACCCTATTCATCTCTGGGATGCTACTACTGGACAGGTGTGTCATTGTCTTTAAAGCTGTTGCTAAAGATGCTTTTTCCTCTCACTGCTCTTTGAAAGGTGGCTAGCAGCCCACGACTTGTGACACTGCTCAATGAGCTTTGCTAGGAAGATATTCTTCCCTACATTATCTTTTCTTGGGTGATTGCAGTTACGTTGTACATACCGTGCTTATGATGCCATGGACGAGATCACTGCTGCCTTTTCAATTGCCTTCAATCCCGCAGGGACTAAGTAAACATTCTTCTTTATCAAAGTGCTCATCTCCTTCCTTGCTCTTGTGGTCACTGTTCATGTAGAGGCACCTGTTTCATCTTTCTTTAATATTTATTTGTAGTTTTTTAAAGAGAGGAAAAAATGAGTTCTTTTGATTTATTGAGAAAGTAATCTATCCATAATTTCTGGCAGTGTGATTAGATTGACAGTAATGAGGCCTAGTTGTTAATTTAGGTGGTTGCAAGTTTTGATACTCTGTCCTCACAAAGGATCATTTTCCTATTTTGTTTTTTCATTATATTGTTTAGACTTAAAGACATGCATTTTCAGTTTTTCTTCTAGTATCTTCTTACTTCATATGCTCTATACTAACTTCTTATGTGTTATTGTGATTTGCTTCACTTTCTTTATTTATGTACTTACAGTTGTTAATATGCTAAGTTTAAACGAAAGTTTTCATTGTTACTTCATTCTTCTCGAATTAGGATATTTGCTGGTTACAACAAATCCATAAGAATATTTGATATTCATCGGCCTGGCAGAGATTTTACCCAGCACTCCACCCTTCAAGGAAATAAAGAAGGGCAATCAGGTATGTTCAGCTAGCTGCTTTTCTTTATGATCACGTTTTTAGCATTTGACTTTATAAATAAGACAATTAGCTAACAATATCTGTGTTAAACACATCAATCTGATAGTTATCTCAAAGAGAAACTATTAAGTCCTCTTGAGGCTAATTAATTTTACCACTTTTGATGCCTCCATTATTATTCATTAAACATTTATTACTCTGGCACCTTTTCTCTAATCTGTTAAGGCATTATTCCTCATTTATTATTCCAACTCCTTTTCTCTTATCTGTTAGGAATTATATCCTCAATGGCTTTCTGTCCAAGCCATTCAGGGTTATTGGCAACTGGCT</genome_strand>
        <mrna_strand>GGTTATTCACTATGATGTTCCGCCGTATCTAACCTATCATTTCTTCAATCAGTTCAGGACGCCTTCAAACCCTAATAATTTCTTAAAGGGTGTCAAATG......................................................................................................GTCTCCTGATGGTTCTGGTTTCCTCACTTGCTCTGATGATAATACCTTTTGTTTATATAACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATATGATGAAAGTGGACAGCTTGCTGATTTTTCCTCATCAGCTGCTGATACAG....................................................................................................................................................................................ATTCGTATGCTGCAAGTCTTGTCATGAGTGACGGGGAGTCTGTATATGACTATTGCTGGTATCCCTATATGTCTTCTTCAA.................................................................................GTCCAGAGACGTGTGTTTTTGCAAGTACTACCCGTGATCACCCTATTCATCTCTGGGATGCTACTACTGGACAG.........................................................................................................................................................TTACGCTGTACATACCGTGCTTATGATGCCATGGACGAGATCACTGCTGCCTTTTCGATTGCCTTCAATCCCGCAGGGACTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTTGCTGGTTACAACAAATCCATAAGAATATTTGATATTCATCGGCCTGGCAGAGATTTTACCCAGCACTCCACCCTTCAAGGAAATAAAGAAGGGCAATCAG.................................................................................................................................................................................................................................................................................GCATTATATCCTCAATGGCTTTCTGTCCAAGCCATTCAAGGTTACTGGCAACTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="23849" PGL_stop="30572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23849" e_stop="24064"/>
            <exon e_start="24439" e_stop="24516"/>
            <exon e_start="24607" e_stop="24849"/>
            <exon e_start="24947" e_stop="25083"/>
            <exon e_start="25168" e_stop="25335"/>
            <exon e_start="26552" e_stop="26664"/>
            <exon e_start="27327" e_stop="27543"/>
            <exon e_start="28898" e_stop="28969"/>
            <exon e_start="29983" e_stop="30102"/>
            <exon e_start="30185" e_stop="30301"/>
            <exon e_start="30396" e_stop="30572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="0.991"/>
          <exon-intron don_prob="0.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.000" e_score="0.996"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.991" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.880" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.946" e_score="0.995"/>
          <exon-intron don_prob="0.984" acc_prob="0.164" e_score="1.000"/>
          <exon-intron don_prob="0.918" acc_prob="0.998" e_score="0.992"/>
          <exon-intron don_prob="0.972" acc_prob="0.965" e_score="0.966"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="23849" e_stop="24064" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="24065" i_stop="24438" i_length="374"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24439" e_stop="24516" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="24517" i_stop="24606" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="24607" e_stop="24849" e_length="243"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24850" i_stop="24946" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="24947" e_stop="25083" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25084" i_stop="25167" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25168" e_stop="25335" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.993">
            <gDNA_intron_boundary i_start="25336" i_stop="26551" i_length="1216"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26552" e_stop="26664" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.880">
            <gDNA_intron_boundary i_start="26665" i_stop="27326" i_length="662"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="27327" e_stop="27543" e_length="217"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.946">
            <gDNA_intron_boundary i_start="27544" i_stop="28897" i_length="1354"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28898" e_stop="28969" e_length="72"/>
          </exon>
          <intron i_serial="8" don_prob="0.984" acc_prob="0.164">
            <gDNA_intron_boundary i_start="28970" i_stop="29982" i_length="1013"/>
          </intron>
          <exon e_serial="9" e_score="0.992">
            <gDNA_exon_boundary e_start="29983" e_stop="30102" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.918" acc_prob="0.998">
            <gDNA_intron_boundary i_start="30103" i_stop="30184" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="0.966">
            <gDNA_exon_boundary e_start="30185" e_stop="30301" e_length="117"/>
          </exon>
          <intron i_serial="10" don_prob="0.972" acc_prob="0.965">
            <gDNA_intron_boundary i_start="30302" i_stop="30395" i_length="94"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="30396" e_stop="30572" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23849" stop="24064"/>
              <exon start="24439" stop="24516"/>
              <exon start="24607" stop="24849"/>
              <exon start="24947" stop="25083"/>
              <exon start="25168" stop="25335"/>
              <exon start="26552" stop="26664"/>
              <exon start="27327" stop="27543"/>
              <exon start="28898" stop="28969"/>
              <exon start="29983" stop="30102"/>
              <exon start="30185" stop="30301"/>
              <exon start="30396" stop="30572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g79560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAAGGAGAAGATGGCAGAACAATTAGATTCAGTAAATGCGAGGTATGTGGTTGAATTTGACATGAAGGAAGTTGAGAACAGCCTTCGCAAAGATGTTGTTGAGAAGACAAGAGAAACTCAAGGAACCAGGGCATTGTGGATCTCGAAAAGATGGTGGAGATATCGCCCGAAACTTCCCTATACCTATTTTCTTCAAAAACTTGATACTTCTGAG : GTGGCTGCTATAGTCTTCACAGAGGATCTGAAGAGAGTGTTTGTCACAATGAAAGAAGGATTCCCTCTTGAATATATT : GTTGATATTCCACTAGATCCTTTCTTATTTGAGATGATATCAAGTTCTGGAGCTGAAGTAGATCTACTTCAGAAGCGGCAGATTCATTACTTTTTCAAAGTTCTTTTTGCTTTATTGCCTGGAATACTGATTTTGTGGTTTATAAGAGAATCTATGATGCTTCTGAACATCACGACAAATCGCCTCCTCTATAAGAAATATAAACAACTCTTCGATATGGCTTATGCTGAAAATTTTATTTTG : TTGGAGAAGTTGGTGAGACGAAATCGATGTATAAAGAAATAGTATTGGGAGGAGATGTTTGGGATCTTTTGGATGAATTGATGATTTATATGGGAAATCCAATGCAATATTATGAGAAAGATGTCAAATTTGTGCGG : GGTGTGCTTCTGTCTGGCCCCCCTGGAACAGGTAAAACACTGTTTGCTCGGACACTTGCAAAGGAAAGTGGGATGCCTTTTGTATTTGCTTCTGGTGCAGAGTTTACTGATAGTGAAAAGAGTGGTGCTGCACGAATCAATGAAATGTTTTCTGTTGCTAGGAGAAAT : GCTCCAGCTTTTGTATTTATAGATGAGATTGATGCTATTGCTGGAAGGCATGCAAGAAAGGATCCACGCAGGAAGGCAACATTTGAGGCTCTGATTTCTCAGCTTGACGGGGA : GAAAGAAAAAACTGGTGTTGATAGGTTTTCACTAAGACAAGCTGTCATATTCATTTGTGCAACCAATCGGCCAGATGAACTGGACTTAGAATTTGTCCGCCCTGGACGTATTGACAGACGTGTGTATATTGGTTTACCAGATGCAAAGCAACGAGTGCAAATTTTTGGAGTTCACAGTGCTGGGAAACAGCTTTCCGAGGATATTGCCTTTGAGAAA : CTTGTCTTTCGTACAGTTGGATATTCTGGGGCAGACATAAGAAATCTAGTCAATGAAGCTGGAATAATGTCT : GTAAGAAAAGGACATTCTAAGATCAACCAGCAGGATATCGTCGATGTTTTGGACAAGCAATTGCTTGAGGGTATGGGTGTTCTACTGACAGAGGAAGAGCAGCAGAAGTGTGAGCAAAGT : GTATCTCGCGAAAAAAGACAACTGTTGGCAGTACATGAAGCTGGTCACATTGTGTTGGCGCACTTGTTCCCTCAGTTTGATTGGCATGCTTTTTCTCAGCTTCTACCTGGGGGCAAG : GAAACTGCTGTATCAGTTTTCTACCCTAGAGAAGATGTGGTTGATCAAGGTTATACAACCTTTGGCTACATGAAAATGCAAATGGTAGTAGCTCATGGCGGGCGCTGTGCCGAACGTATTGTATTTGGTGATGACATTACTGATGGAGGAGTAGATGATCTAGAAAAGATTACCAAG</gDNA_template>
            <first_frame> R  K  E  K  M  A  E  Q  L  D  S  V  N  A  R  Y  V  V  E  F  D  M  K  E  V  E  N  S  L  R  K  D  V  V  E  K  T  R  E  T  Q  G  T  R  A  L  W  I  S  K  R  W  W  R  Y  R  P  K  L  P  Y  T  Y  F  L  Q  K  L  D  T  S  E  :  V  A  A  I  V  F  T  E  D  L  K  R  V  F  V  T  M  K  E  G  F  P  L  E  Y  I  :  V  D  I  P  L  D  P  F  L  F  E  M  I  S  S  S  G  A  E  V  D  L  L  Q  K  R  Q  I  H  Y  F  F  K  V  L  F  A  L  L  P  G  I  L  I  L  W  F  I  R  E  S  M  M  L  L  N  I  T  T  N  R  L  L  Y  K  K  Y  K  Q  L  F  D  M  A  Y  A  E  N  F  I  L  :  L  E  K  L  V  R  R  N  R  C  I  K  K  *  Y  W  E  E  M  F  G  I  F  W  M  N  *  *  F  I  W  E  I  Q  C  N  I  M  R  K  M  S  N  L  C  G :   V  C  F  C  L  A  P  L  E  Q  V  K  H  C  L  L  G  H  L  Q  R  K  V  G  C  L  L  Y  L  L  L  V  Q  S  L  L  I  V  K  R  V  V  L  H  E  S  M  K  C  F  L  L  L  G  E  M :   L  Q  L  L  Y  L  *  M  R  L  M  L  L  L  E  G  M  Q  E  R  I  H  A  G  R  Q  H  L  R  L  *  F  L  S  L  T  G   : R  K  K  K  L  V  L  I  G  F  H  *  D  K  L  S  Y  S  F  V  Q  P  I  G  Q  M  N  W  T  *  N  L  S  A  L  D  V  L  T  D  V  C  I  L  V  Y  Q  M  Q  S  N  E  C  K  F  L  E  F  T  V  L  G  N  S  F  P  R  I  L  P  L  R  N :   L  S  F  V  Q  L  D  I  L  G  Q  T  *  E  I  *  S  M  K  L  E  *  C  L :   *  E  K  D  I  L  R  S  T  S  R  I  S  S  M  F  W  T  S  N  C  L  R  V  W  V  F  Y  *  Q  R  K  S  S  R  S  V  S  K  V :   Y  L  A  K  K  D  N  C  W  Q  Y  M  K  L  V  T  L  C  W  R  T  C  S  L  S  L  I  G  M  L  F  L  S  F  Y  L  G  A  R :   K  L  L  Y  Q  F  S  T  L  E  K  M  W  L  I  K  V  I  Q  P  L  A  T  *  K  C  K  W  *  *  L  M  A  G  A  V  P  N  V  L  Y  L  V  M  T  L  L  M  E  E  *  M  I  *  K  R  L  P   </first_frame>
            <second_frame>  G  R  R  R  W  Q  N  N  *  I  Q  *  M  R  G  M  W  L  N  L  T  *  R  K  L  R  T  A  F  A  K  M  L  L  R  R  Q  E  K  L  K  E  P  G  H  C  G  S  R  K  D  G  G  D  I  A  R  N  F  P  I  P  I  F  F  K  N  L  I  L  L  R :   W  L  L  *  S  S  Q  R  I  *  R  E  C  L  S  Q  *  K  K  D  S  L  L  N  I  L :   L  I  F  H  *  I  L  S  Y  L  R  *  Y  Q  V  L  E  L  K  *  I  Y  F  R  S  G  R  F  I  T  F  S  K  F  F  L  L  Y  C  L  E  Y  *  F  C  G  L  *  E  N  L  *  C  F  *  T  S  R  Q  I  A  S  S  I  R  N  I  N  N  S  S  I  W  L  M  L  K  I  L  F  C :   W  R  S  W  *  D  E  I  D  V  *  R  N  S  I  G  R  R  C  L  G  S  F  G  *  I  D  D  L  Y  G  K  S  N  A  I  L  *  E  R  C  Q  I  C  A   : G  C  A  S  V  W  P  P  W  N  R  *  N  T  V  C  S  D  T  C  K  G  K  W  D  A  F  C  I  C  F  W  C  R  V  Y  *  *  *  K  E  W  C  C  T  N  Q  *  N  V  F  C  C  *  E  K   : C  S  S  F  C  I  Y  R  *  D  *  C  Y  C  W  K  A  C  K  K  G  S  T  Q  E  G  N  I  *  G  S  D  F  S  A  *  R  G  :  E  R  K  N  W  C  *  *  V  F  T  K  T  S  C  H  I  H  L  C  N  Q  S  A  R  *  T  G  L  R  I  C  P  P  W  T  Y  *  Q  T  C  V  Y  W  F  T  R  C  K  A  T  S  A  N  F  W  S  S  Q  C  W  E  T  A  F  R  G  Y  C  L  *  E   : T  C  L  S  Y  S  W  I  F  W  G  R  H  K  K  S  S  Q  *  S  W  N  N  V   : C  K  K  R  T  F  *  D  Q  P  A  G  Y  R  R  C  F  G  Q  A  I  A  *  G  Y  G  C  S  T  D  R  G  R  A  A  E  V  *  A  K   : C  I  S  R  K  K  T  T  V  G  S  T  *  S  W  S  H  C  V  G  A  L  V  P  S  V  *  L  A  C  F  F  S  A  S  T  W  G  Q   : G  N  C  C  I  S  F  L  P  *  R  R  C  G  *  S  R  L  Y  N  L  W  L  H  E  N  A  N  G  S  S  S  W  R  A  L  C  R  T  Y  C  I  W  *  *  H  Y  *  W  R  S  R  *  S  R  K  D  Y  Q  </second_frame>
            <third_frame>   E  G  E  D  G  R  T  I  R  F  S  K  C  E  V  C  G  *  I  *  H  E  G  S  *  E  Q  P  S  Q  R  C  C  *  E  D  K  R  N  S  R  N  Q  G  I  V  D  L  E  K  M  V  E  I  S  P  E  T  S  L  Y  L  F  S  S  K  T  *  Y  F  *   : G  G  C  Y  S  L  H  R  G  S  E  E  S  V  C  H  N  E  R  R  I  P  S  *  I  Y   : C  *  Y  S  T  R  S  F  L  I  *  D  D  I  K  F  W  S  *  S  R  S  T  S  E  A  A  D  S  L  L  F  Q  S  S  F  C  F  I  A  W  N  T  D  F  V  V  Y  K  R  I  Y  D  A  S  E  H  H  D  K  S  P  P  L  *  E  I  *  T  T  L  R  Y  G  L  C  *  K  F  Y  F   : V  G  E  V  G  E  T  K  S  M  Y  K  E  I  V  L  G  G  D  V  W  D  L  L  D  E  L  M  I  Y  M  G  N  P  M  Q  Y  Y  E  K  D  V  K  F  V  R  :  G  V  L  L  S  G  P  P  G  T  G  K  T  L  F  A  R  T  L  A  K  E  S  G  M  P  F  V  F  A  S  G  A  E  F  T  D  S  E  K  S  G  A  A  R  I  N  E  M  F  S  V  A  R  R  N  :  A  P  A  F  V  F  I  D  E  I  D  A  I  A  G  R  H  A  R  K  D  P  R  R  K  A  T  F  E  A  L  I  S  Q  L  D  G  E :   K  E  K  T  G  V  D  R  F  S  L  R  Q  A  V  I  F  I  C  A  T  N  R  P  D  E  L  D  L  E  F  V  R  P  G  R  I  D  R  R  V  Y  I  G  L  P  D  A  K  Q  R  V  Q  I  F  G  V  H  S  A  G  K  Q  L  S  E  D  I  A  F  E  K  :  L  V  F  R  T  V  G  Y  S  G  A  D  I  R  N  L  V  N  E  A  G  I  M  S  :  V  R  K  G  H  S  K  I  N  Q  Q  D  I  V  D  V  L  D  K  Q  L  L  E  G  M  G  V  L  L  T  E  E  E  Q  Q  K  C  E  Q  S  :  V  S  R  E  K  R  Q  L  L  A  V  H  E  A  G  H  I  V  L  A  H  L  F  P  Q  F  D  W  H  A  F  S  Q  L  L  P  G  G  K  :  E  T  A  V  S  V  F  Y  P  R  E  D  V  V  D  Q  G  Y  T  T  F  G  Y  M  K  M  Q  M  V  V  A  H  G  G  R  C  A  E  R  I  V  F  G  D  D  I  T  D  G  G  V  D  D  L  E  K  I  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0114O11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24837" stop="24849"/>
                    <exon start="24947" stop="25083"/>
                    <exon start="25168" stop="25335"/>
                    <exon start="26552" stop="26664"/>
                    <exon start="27327" stop="27543"/>
                    <exon start="28898" stop="28969"/>
                    <exon start="29983" stop="30102"/>
                    <exon start="30185" stop="30301"/>
                    <exon start="30396" stop="30572"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFYFVGEVGETKSMYKEIVLGGDVWDLLDELMIYMGNPMQYYEKDVKFVRGVLLSGPPGTGKTLFARTLAKESGMPFVFASGAEFTDSEKSGAARINEMFSVARRNAPAFVFIDEIDAIAGRHARKDPRRKATFEALISQLDGEKEKTGVDRFSLRQAVIFICATNRPDELDLEFVRPGRIDRRVYIGLPDAKQRVQIFGVHSAGKQLSEDIAFEKLVFRTVGYSGADIRNLVNEAGIMSVRKGHSKINQQDIVDVLDKQLLEGMGVLLTEEEQQKCEQSVSREKRQLLAVHEAGHIVLAHLFPQFDWHAFSQLLPGGKETAVSVFYPREDVVDQGYTTFGYMKMQMVVAHGGRCAERIVFGDDITDGGVDDLEKITK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="134461" PGL_stop="136881"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134461" e_stop="134617"/>
            <exon e_start="134720" e_stop="134782"/>
            <exon e_start="135270" e_stop="135325"/>
            <exon e_start="135506" e_stop="135586"/>
            <exon e_start="135668" e_stop="135741"/>
            <exon e_start="135895" e_stop="135977"/>
            <exon e_start="136445" e_stop="136551"/>
            <exon e_start="136825" e_stop="136881"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.672" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.911" acc_prob="0.686" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.996" e_score="0.986"/>
          <exon-intron don_prob="0.998" acc_prob="0.634" e_score="0.976"/>
          <exon-intron don_prob="1.000" acc_prob="0.447" e_score="1.000"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134461" e_stop="134617" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="134618" i_stop="134719" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134720" e_stop="134782" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.672" acc_prob="0.994">
            <gDNA_intron_boundary i_start="134783" i_stop="135269" i_length="487"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="135270" e_stop="135325" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="135326" i_stop="135505" i_length="180"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="135506" e_stop="135586" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.911" acc_prob="0.686">
            <gDNA_intron_boundary i_start="135587" i_stop="135667" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="135668" e_stop="135741" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.996">
            <gDNA_intron_boundary i_start="135742" i_stop="135894" i_length="153"/>
          </intron>
          <exon e_serial="6" e_score="0.976">
            <gDNA_exon_boundary e_start="135895" e_stop="135977" e_length="83"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.634">
            <gDNA_intron_boundary i_start="135978" i_stop="136444" i_length="467"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="136445" e_stop="136551" e_length="107"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.447">
            <gDNA_intron_boundary i_start="136552" i_stop="136824" i_length="273"/>
          </intron>
          <exon e_serial="8" e_score="0.947">
            <gDNA_exon_boundary e_start="136825" e_stop="136881" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134461" stop="134617"/>
              <exon start="134720" stop="134782"/>
              <exon start="135270" stop="135325"/>
              <exon start="135506" stop="135586"/>
              <exon start="135668" stop="135741"/>
              <exon start="135895" stop="135977"/>
              <exon start="136445" stop="136551"/>
              <exon start="136825" stop="136881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g21520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134519" stop="134617"/>
              <exon start="134720" stop="134782"/>
              <exon start="135270" stop="135325"/>
              <exon start="135506" stop="135586"/>
              <exon start="135668" stop="135741"/>
              <exon start="135895" stop="135977"/>
              <exon start="136445" stop="136551"/>
              <exon start="136825" stop="136881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1438" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAACCCCTATTGAAGCTGTAGAAGAGAAACCATCGGAAGAACCTTACCCTTGGCCGGTTATTCAGTATGATGTTCCGCCGTATCTAACCTATCATTTCTTCAATCAGTTCAGGACGCCTTCAAACCCTAATAATTTCTTAAAGGGTGTCAAATG : GTCTCCTGATGGTTCTGGTTTCCTCACTTGCTCTGATGATAATACCTTTTGTTTATATAACTT : GCCATATGATGAAAGTGGACAGCTTGCTGATTTTTCCTCATCAGCTGCTGATACAG : ATTCGTATGCTGCAAGTCTTGTCATGAGTGACGGGGAGTCTGTATATGACTATTGCTGGTATCCCTATATGTCTTCTTCAA : GTCCAGAGACATGTGTTTTTGCAAGTACTACCCGTGATCACCCTATTCATCTCTGGGATGCTACTACTGGACAG : TTACGTTGTACATACCGTGCTTATGATGCCATGGACGAGATCACTGCTGCCTTTTCAATTGCCTTCAATCCCGCAGGGACTAA : GATATTTGCTGGTTACAACAAATCCATAAGAATATTTGATATTCATCGGCCTGGCAGAGATTTTACCCAGCACTCCACCCTTCAAGGAAATAAAGAAGGGCAATCAG : GAATTATATCCTCAATGGCTTTCTGTCCAAGCCATTCAGGGTTATTGGCAACTGGCT</gDNA_template>
            <first_frame> R  K  P  L  L  K  L  *  K  R  N  H  R  K  N  L  T  L  G  R  L  F  S  M  M  F  R  R  I  *  P  I  I  S  S  I  S  S  G  R  L  Q  T  L  I  I  S  *  R  V  S  N   : G  L  L  M  V  L  V  S  S  L  A  L  M  I  I  P  F  V  Y  I  T   : C  H  M  M  K  V  D  S  L  L  I  F  P  H  Q  L  L  I  Q  :  I  R  M  L  Q  V  L  S  *  V  T  G  S  L  Y  M  T  I  A  G  I  P  I  C  L  L  Q  :  V  Q  R  H  V  F  L  Q  V  L  P  V  I  T  L  F  I  S  G  M  L  L  L  D  S :   Y  V  V  H  T  V  L  M  M  P  W  T  R  S  L  L  P  F  Q  L  P  S  I  P  Q  G  L   : R  Y  L  L  V  T  T  N  P  *  E  Y  L  I  F  I  G  L  A  E  I  L  P  S  T  P  P  F  K  E  I  K  K  G  N  Q  :  E  L  Y  P  Q  W  L  S  V  Q  A  I  Q  G  Y  W  Q  L  A </first_frame>
            <second_frame>  G  N  P  Y  *  S  C  R  R  E  T  I  G  R  T  L  P  L  A  G  Y  S  V  *  C  S  A  V  S  N  L  S  F  L  Q  S  V  Q  D  A  F  K  P  *  *  F  L  K  G  C  Q  M  :  V  S  *  W  F  W  F  P  H  L  L  *  *  *  Y  L  L  F  I  *  L  :  A  I  *  *  K  W  T  A  C  *  F  F  L  I  S  C  *  Y  R :   F  V  C  C  K  S  C  H  E  *  R  G  V  C  I  *  L  L  L  V  S  L  Y  V  F  F  K :   S  R  D  M  C  F  C  K  Y  Y  P  *  S  P  Y  S  S  L  G  C  Y  Y  W  T   : V  T  L  Y  I  P  C  L  *  C  H  G  R  D  H  C  C  L  F  N  C  L  Q  S  R  R  D  *  :  D  I  C  W  L  Q  Q  I  H  K  N  I  *  Y  S  S  A  W  Q  R  F  Y  P  A  L  H  P  S  R  K  *  R  R  A  I  R :   N  Y  I  L  N  G  F  L  S  K  P  F  R  V  I  G  N  W   </second_frame>
            <third_frame>   E  T  P  I  E  A  V  E  E  K  P  S  E  E  P  Y  P  W  P  V  I  Q  Y  D  V  P  P  Y  L  T  Y  H  F  F  N  Q  F  R  T  P  S  N  P  N  N  F  L  K  G  V  K  W :   S  P  D  G  S  G  F  L  T  C  S  D  D  N  T  F  C  L  Y  N  L :   P  Y  D  E  S  G  Q  L  A  D  F  S  S  S  A  A  D  T   : D  S  Y  A  A  S  L  V  M  S  D  G  E  S  V  Y  D  Y  C  W  Y  P  Y  M  S  S  S   : S  P  E  T  C  V  F  A  S  T  T  R  D  H  P  I  H  L  W  D  A  T  T  G  Q  :  L  R  C  T  Y  R  A  Y  D  A  M  D  E  I  T  A  A  F  S  I  A  F  N  P  A  G  T  K :   I  F  A  G  Y  N  K  S  I  R  I  F  D  I  H  R  P  G  R  D  F  T  Q  H  S  T  L  Q  G  N  K  E  G  Q  S   : G  I  I  S  S  M  A  F  C  P  S  H  S  G  L  L  A  T  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0114O11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134463" stop="134617"/>
                    <exon start="134720" stop="134782"/>
                    <exon start="135270" stop="135325"/>
                    <exon start="135506" stop="135586"/>
                    <exon start="135668" stop="135741"/>
                    <exon start="135895" stop="135977"/>
                    <exon start="136445" stop="136551"/>
                    <exon start="136825" stop="136880"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETPIEAVEEKPSEEPYPWPVIQYDVPPYLTYHFFNQFRTPSNPNNFLKGVKWSPDGSGFLTCSDDNTFCLYNLPYDESGQLADFSSSAADTDSYAASLVMSDGESVYDYCWYPYMSSSSPETCVFASTTRDHPIHLWDATTGQLRCTYRAYDAMDEITAAFSIAFNPAGTKIFAGYNKSIRIFDIHRPGRDFTQHSTLQGNKEGQSGIISSMAFCPSHSGLLATG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 116 chains have been computed
$ 
$ memory statistics:
$ 6728 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2242 bytes was the average size of a spliced alignment
$ 7248 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3624 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 118 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:52:49
-->
